Accessing BCO-DMO data
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BCO-DMO ERDDAP
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| Dataset Title: | [OIMB Pier Physical Data 2014-2016] - Physical data (sal, temp, wind, wave height) collected from January-March of 2014, 2015, and 2016 at the OIMB pier located in the Coos Bay entrance of the Oregon Coast (Spawning During Storms and the Subsequent Dispersal and Settlement of Coastal Invertebrate Larvae) 
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| Institution: | BCO-DMO (Dataset ID: bcodmo_dataset_682521) |
| Information: | Summary
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| ISO 19115
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Attributes {
s {
location {
String bcodmo_name "site";
String description "Name of sampling location";
String long_name "Location";
String units "unitless";
}
latitude {
String _CoordinateAxisType "Lat";
Float64 _FillValue NaN;
Float64 actual_range 43.3496333, 43.3496333;
String axis "Y";
String bcodmo_name "latitude";
Float64 colorBarMaximum 90.0;
Float64 colorBarMinimum -90.0;
String description "Latitude of sampling location";
String ioos_category "Location";
String long_name "Latitude";
String nerc_identifier "https://vocab.nerc.ac.uk/collection/P09/current/LATX/";
String standard_name "latitude";
String units "degrees_north";
}
longitude {
String _CoordinateAxisType "Lon";
Float64 _FillValue NaN;
Float64 actual_range -124.3299167, -124.3299167;
String axis "X";
String bcodmo_name "longitude";
Float64 colorBarMaximum 180.0;
Float64 colorBarMinimum -180.0;
String description "Longitude of sampling location";
String ioos_category "Location";
String long_name "Longitude";
String nerc_identifier "https://vocab.nerc.ac.uk/collection/P09/current/LONX/";
String standard_name "longitude";
String units "degrees_east";
}
year {
Int16 _FillValue 32767;
Int16 actual_range 2014, 2016;
String bcodmo_name "year";
String description "4-digit year; format: yyyy";
String long_name "Year";
String nerc_identifier "https://vocab.nerc.ac.uk/collection/P01/current/YEARXXXX/";
String units "unitless";
}
date {
String bcodmo_name "date";
String description "Date sampled in yyyy-mm-dd format";
String long_name "Date";
String nerc_identifier "https://vocab.nerc.ac.uk/collection/P01/current/ADATAA01/";
String source_name "date";
String time_precision "1970-01-01";
String units "unitless";
}
tidal_ht {
Float32 _FillValue NaN;
Float32 actual_range 1.27548, 2.87541;
String bcodmo_name "tide";
String description "Height of high tide sampled (from Mr Tides, url: http://www.mrtides.com/; site: Coos Bay entrance, Oregon)";
String long_name "Tidal Ht";
String units "meters (m)";
}
rainfall {
Float32 _FillValue NaN;
Float32 actual_range 0.0, 1.79;
String bcodmo_name "precip_level";
String description "Rain fall in inches (rain gauge at the OIMB pier)";
String long_name "Rainfall";
String units "inches";
}
sal {
Float32 _FillValue NaN;
Float32 actual_range 27.3, 35.0;
String bcodmo_name "sal";
String description "Salinity (refractometer)";
String long_name "Sal";
String nerc_identifier "https://vocab.nerc.ac.uk/collection/P01/current/PSALST01/";
String units "PSU";
}
temp {
Float32 _FillValue NaN;
Float32 actual_range 5.8, 14.4;
String bcodmo_name "temperature";
String description "temperature, C (measured with a probe at sampling)";
String long_name "Temperature";
String nerc_identifier "https://vocab.nerc.ac.uk/collection/P01/current/TEMPP901/";
String units "degrees Celsius";
}
temp_tidbit {
Float32 _FillValue NaN;
Float32 actual_range 10.40304, 12.61104;
String bcodmo_name "temperature";
String description "Temperature, C from tidbit thermistor in the sample tank. Temp is from high tide.";
String long_name "Temp Tidbit";
String nerc_identifier "https://vocab.nerc.ac.uk/collection/P01/current/TEMPP901/";
String units "degrees Celsius";
}
wind_stress_alongshore {
Float64 _FillValue NaN;
Float64 actual_range -6.379448438, 4.153157022;
String bcodmo_name "unknown";
String description "Alongshore wind stress, dynes (calculated from wind speed from the NOAA Port Orford Buoy, Station 46015)";
String long_name "Wind Stress Alongshore";
String units "dynes";
}
wind_stress_cross_shore {
Float64 _FillValue NaN;
Float64 actual_range -2.477248501, 1.032639111;
String bcodmo_name "unknown";
String description "Cross-shore wind stress, dynes (calculated from wind speed from the NOAA Port Orford Buoy, Station 46015)";
String long_name "Wind Stress Cross Shore";
String units "dynes";
}
wave_ht_daily_avg {
Float64 _FillValue NaN;
Float64 actual_range 1.0108, 15.3248;
String bcodmo_name "wave_height";
String description "Daily avg wave ht (determined from hourly significant wave height reported from NOAA Port Orford Buoy, Station 46015)";
String long_name "Wave Ht Daily Avg";
String units "meters (m)";
}
fluor {
Float64 _FillValue NaN;
Float64 actual_range 0.21914, 0.99417;
String bcodmo_name "fluorescence";
String description "Fluorescence as AC current output, amps (Turner Design inline model). Reported in 2016 data.";
String long_name "Fluor";
String nerc_identifier "https://vocab.nerc.ac.uk/collection/P01/current/CPHLPM01/";
String units "amps";
}
chl_a {
Float32 _FillValue NaN;
Float32 actual_range 0.7, 9.5;
String bcodmo_name "chlorophyll a";
Float64 colorBarMaximum 30.0;
Float64 colorBarMinimum 0.03;
String colorBarScale "Log";
String description "Chlorophyll-a (gaps in the data are missing data, \"nd\"). Reported in 2014 and 2015 data.";
String long_name "Concentration Of Chlorophyll In Sea Water";
String nerc_identifier "https://vocab.nerc.ac.uk/collection/P01/current/CPHLHPP1/";
String units "milligrams per cubic meter (mg/m3)";
}
}
NC_GLOBAL {
String access_formats ".htmlTable,.csv,.json,.mat,.nc,.tsv,.esriCsv,.geoJson";
String acquisition_description
"The OIMB pier is located on the Oregon Coast, Coos Bay entrance
(43\\u00a020.978'N, 124 19.795'W).
Methodology:
Daily samples of oceanic water were collected approx. 30 minutes before high
tide (early morning to late afternoon) with an electric (220V) diaphragm pump
(American Machine Self Priming Pump, Model 335E-K6, 3\\\" diameter with a 2hp
motor). Salinity, water temperature, and fluorescence were measured for water
in the daily pier samples. Tide height was assumed from predictions of Mr
Tides (url: [http://www.mrtides.com/](\\\\\"http://www.mrtides.com/\\\\\"); site:
Coos Bay entrance, Oregon); Wind stress and wave height were calculated from
NOAA buoy Station 46015 (off Port Orford, Oregon).
Sampling dates:
2016: Data are reported\\u00a0from 1/4/2016 to 3/18/2016 (75 days).\\u00a0
2015:\\u00a0Data are reported from 1/6/2015 to 3/19/2015 (73 days).
2014:\\u00a0Data are reported from 1/1/2014 to 3/20/2014 (79 days).
Note: The 2014 and 2015 data report chlorophyll-a in milligrams per cubic
meter (mg/m3). The 2016 data reports fluorescence in amps (AC current output).";
String awards_0_award_nid "549164";
String awards_0_award_number "OCE-1259603";
String awards_0_data_url "http://www.nsf.gov/awardsearch/showAward.do?AwardNumber=1259603";
String awards_0_funder_name "NSF Division of Ocean Sciences";
String awards_0_funding_acronym "NSF OCE";
String awards_0_funding_source_nid "355";
String awards_0_program_manager "David L. Garrison";
String awards_0_program_manager_nid "50534";
String cdm_data_type "Other";
String comment
"2014-2016 OIMB Pier Physical Data
PI: Richard B. Emlet (Oregon Institute of Marine Biology)
Co-PIs: Alan Shanks (Oregon Institute of Marine Biology) & David Sutherland (Univeristy of Oregon)
Version history:
25 April 2017 - added 2014 & 2015 data
21 Feb 2017 - original version; 2016 data only";
String Conventions "COARDS, CF-1.6, ACDD-1.3";
String creator_email "info@bco-dmo.org";
String creator_name "BCO-DMO";
String creator_type "institution";
String creator_url "https://www.bco-dmo.org/";
String data_source "extract_data_as_tsv version 2.3 19 Dec 2019";
String date_created "2017-02-16T17:34:26Z";
String date_modified "2020-01-21T21:29:53Z";
String defaultDataQuery "&time<now";
String doi "10.1575/1912/bco-dmo.682521.1";
Float64 Easternmost_Easting -124.3299167;
Float64 geospatial_lat_max 43.3496333;
Float64 geospatial_lat_min 43.3496333;
String geospatial_lat_units "degrees_north";
Float64 geospatial_lon_max -124.3299167;
Float64 geospatial_lon_min -124.3299167;
String geospatial_lon_units "degrees_east";
String history
"2024-11-23T17:30:58Z (local files)
2024-11-23T17:30:58Z https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_682521.html";
String infoUrl "https://www.bco-dmo.org/dataset/682521";
String institution "BCO-DMO";
String instruments_0_acronym "Fluorometer";
String instruments_0_dataset_instrument_nid "682571";
String instruments_0_description "A fluorometer or fluorimeter is a device used to measure parameters of fluorescence: its intensity and wavelength distribution of emission spectrum after excitation by a certain spectrum of light. The instrument is designed to measure the amount of stimulated electromagnetic radiation produced by pulses of electromagnetic radiation emitted into a water sample or in situ.";
String instruments_0_instrument_external_identifier "https://vocab.nerc.ac.uk/collection/L05/current/113/";
String instruments_0_instrument_name "Fluorometer";
String instruments_0_instrument_nid "484";
String instruments_0_supplied_name "Turner Design inline model";
String instruments_1_acronym "Water Temp Sensor";
String instruments_1_dataset_instrument_nid "682570";
String instruments_1_description "General term for an instrument that measures the temperature of the water with which it is in contact (thermometer).";
String instruments_1_instrument_external_identifier "https://vocab.nerc.ac.uk/collection/L05/current/134/";
String instruments_1_instrument_name "Water Temperature Sensor";
String instruments_1_instrument_nid "647";
String instruments_2_acronym "PrecipGauge";
String instruments_2_dataset_instrument_nid "682565";
String instruments_2_description "measures rain or snow precipitation";
String instruments_2_instrument_external_identifier "https://vocab.nerc.ac.uk/collection/L05/current/381/";
String instruments_2_instrument_name "Precipitation Gauge";
String instruments_2_instrument_nid "671";
String instruments_2_supplied_name "rain gauge";
String instruments_3_acronym "Refractometer";
String instruments_3_dataset_instrument_nid "682566";
String instruments_3_description
"A refractometer is a laboratory or field device for the measurement of an index of refraction (refractometry). The index of refraction is calculated from Snell's law and can be calculated from the composition of the material using the Gladstone-Dale relation.
In optics the refractive index (or index of refraction) n of a substance (optical medium) is a dimensionless number that describes how light, or any other radiation, propagates through that medium.";
String instruments_3_instrument_name "Refractometer";
String instruments_3_instrument_nid "679";
String instruments_3_supplied_name "refractometer";
String instruments_4_dataset_instrument_nid "682568";
String instruments_4_description
"A thermistor is a type of resistor whose resistance varies significantly with temperature, more so than in standard resistors. The word is a portmanteau of thermal and resistor. Thermistors are widely used as inrush current limiters, temperature sensors, self-resetting overcurrent protectors, and self-regulating heating elements.
Thermistors differ from resistance temperature detectors (RTD) in that the material used in a thermistor is generally a ceramic or polymer, while RTDs use pure metals. The temperature response is also different; RTDs are useful over larger temperature ranges, while thermistors typically achieve a higher precision within a limited temperature range, typically 90C to 130C.";
String instruments_4_instrument_name "Thermistor";
String instruments_4_instrument_nid "725";
String instruments_4_supplied_name "thermistor";
String instruments_5_dataset_instrument_description "Daily samples of oceanic water were collected approx. 30 min before high tide (early morning to late afternoon) with an electric (220V) diaphragm pump (American Machine Self Priming Pump, Model 335E-K6, 3\" diameter with a 2hp motor).";
String instruments_5_dataset_instrument_nid "682534";
String instruments_5_description "A pump is a device that moves fluids (liquids or gases), or sometimes slurries, by mechanical action. Pumps can be classified into three major groups according to the method they use to move the fluid: direct lift, displacement, and gravity pumps";
String instruments_5_instrument_name "Pump";
String instruments_5_instrument_nid "726";
String instruments_5_supplied_name "diaphragm pump";
String keywords "alongshore, altimetry, average, bco, bco-dmo, biological, chemical, chemistry, chl_a, chlorophyll, concentration, concentration_of_chlorophyll_in_sea_water, cross, daily, data, dataset, date, day, dmo, earth, Earth Science > Oceans > Ocean Chemistry > Chlorophyll, erddap, fluor, laboratory, latitude, longitude, management, ocean, oceanography, oceans, office, precipitation, preliminary, rain, rainfall, sal, satellite, science, sea, seawater, shore, stress, temp_tidbit, temperature, tidal, tidal_ht, tidbit, time, water, wave, wave_ht_daily_avg, wind, wind_stress_alongshore, wind_stress_cross_shore, year";
String keywords_vocabulary "GCMD Science Keywords";
String license "https://www.bco-dmo.org/dataset/682521/license";
String metadata_source "https://www.bco-dmo.org/api/dataset/682521";
Float64 Northernmost_Northing 43.3496333;
String param_mapping "{'682521': {'lat': 'master - latitude', 'lon': 'master - longitude'}}";
String parameter_source "https://www.bco-dmo.org/mapserver/dataset/682521/parameters";
String people_0_affiliation "University of Oregon";
String people_0_affiliation_acronym "OIMB";
String people_0_person_name "Richard Emlet";
String people_0_person_nid "549167";
String people_0_role "Principal Investigator";
String people_0_role_type "originator";
String people_1_affiliation "University of Oregon";
String people_1_affiliation_acronym "OIMB";
String people_1_person_name "Alan L. Shanks";
String people_1_person_nid "506185";
String people_1_role "Co-Principal Investigator";
String people_1_role_type "originator";
String people_2_affiliation "University of Oregon";
String people_2_person_name "David A. Sutherland";
String people_2_person_nid "549169";
String people_2_role "Co-Principal Investigator";
String people_2_role_type "originator";
String people_3_affiliation "University of Oregon";
String people_3_affiliation_acronym "OIMB";
String people_3_person_name "Richard Emlet";
String people_3_person_nid "549167";
String people_3_role "Contact";
String people_3_role_type "related";
String people_4_affiliation "Woods Hole Oceanographic Institution";
String people_4_affiliation_acronym "WHOI BCO-DMO";
String people_4_person_name "Shannon Rauch";
String people_4_person_nid "51498";
String people_4_role "BCO-DMO Data Manager";
String people_4_role_type "related";
String project "Storm larvae";
String projects_0_acronym "Storm larvae";
String projects_0_description
"The study will address four questions concerning invertebrate spawning on the US West Coast: 1) Which nearshore benthic invertebrates spawn during winter? 2) What conditions are associated with spawning events? (Preliminary data lead the PIs to predict that most spawning will occur during periods of large waves and coastal downwelling.) 3) What is the pattern of dispersal of these winter-spawned larvae in the coastal ocean? 4) How do variations in ocean conditions during pelagic development affect delivery of larvae to the shore?
Water will be sampled daily from the seawater intake for the Oregon Institute of Marine Biology marine laboratory in Coos Bay, OR. Water is pumped at high tide when the intake samples coastal ocean water. Early larval stages will be identified by genetic barcoding and a visual ID key will be developed from individuals raised in the lab. Time series analysis will be used to test for the effects of oceanographic parameters (e.g., temperature, salinity, Chl-a, wind stress, and wave data) on spawning events indicated by the sudden appearance of zygotes or embryos. Following a spawning event, oceanographic cruises in the coastal ocean will follow the dispersal and pelagic development of the larvae and relate their distribution to coastal hydrodynamics. Using daily samples from the seawater system and settlement collectors at intertidal sample sites, the PIs will monitor the abundance of late stage larvae in the near-shore and settlement in the intertidal zone. These time series will be compared to hydrographic parameters to identify conditions favoring the maintenance of larvae in the waters adjacent to the coast and the delivery of larvae to the shore.";
String projects_0_end_date "2019-01";
String projects_0_geolocation "Coastal waters of Coos Bay, OR";
String projects_0_name "Spawning During Storms and the Subsequent Dispersal and Settlement of Coastal Invertebrate Larvae";
String projects_0_project_nid "549165";
String projects_0_start_date "2013-02";
String publisher_name "Biological and Chemical Oceanographic Data Management Office (BCO-DMO)";
String publisher_type "institution";
String sourceUrl "(local files)";
Float64 Southernmost_Northing 43.3496333;
String standard_name_vocabulary "CF Standard Name Table v55";
String subsetVariables "location,latitude,longitude";
String summary "Physical data (sal, temp, wind, wave height) measured at the Oregon Institute of Marine Biology (OIMB) pier during 2014-2016.";
String title "[OIMB Pier Physical Data 2014-2016] - Physical data (sal, temp, wind, wave height) collected from January-March of 2014, 2015, and 2016 at the OIMB pier located in the Coos Bay entrance of the Oregon Coast (Spawning During Storms and the Subsequent Dispersal and Settlement of Coastal Invertebrate Larvae)";
String version "1";
Float64 Westernmost_Easting -124.3299167;
String xml_source "osprey2erddap.update_xml() v1.3";
}
}
Data Access Protocol (DAP) and its
selection constraints.
The URL specifies what you want: the dataset, a description of the graph or the subset of the data, and the file type for the response.
Tabledap request URLs must be in the form
https://coastwatch.pfeg.noaa.gov/erddap/tabledap/datasetID.fileType{?query}
For example,
https://coastwatch.pfeg.noaa.gov/erddap/tabledap/pmelTaoDySst.htmlTable?longitude,latitude,time,station,wmo_platform_code,T_25&time>=2015-05-23T12:00:00Z&time<=2015-05-31T12:00:00Z
Thus, the query is often a comma-separated list of desired variable names,
followed by a collection of
constraints (e.g., variable<value),
each preceded by '&' (which is interpreted as "AND").
For details, see the tabledap Documentation.