Accessing BCO-DMO data
Brought to you by BCO-DMO
|
|
BCO-DMO ERDDAP
Accessing BCO-DMO data |
log in
Brought to you by BCO-DMO |
| Dataset Title: | [Palau dissepiment counts] - Dissepiment counts obtained from staining experiment of Porites coral from Palau (Can Coral Reefs in the Central Pacific Survive Ocean Warming? A 2015 El Nino Test) 
|
| Institution: | BCO-DMO (Dataset ID: bcodmo_dataset_688125) |
| Information: | Summary
| License
| FGDC
| ISO 19115
| Metadata
| Background
| Files
| Make a graph
|
Attributes {
s {
coral_id {
Int16 _FillValue 32767;
Int16 actual_range 675, 690;
String bcodmo_name "unknown";
String description "Identification number of coral colony";
String long_name "Coral Id";
String units "unitless";
}
site {
String bcodmo_name "site";
String description "Name of study site";
String long_name "Site";
String units "unitless";
}
latitude {
String _CoordinateAxisType "Lat";
Float64 _FillValue NaN;
Float64 actual_range 7.267, 7.323;
String axis "Y";
String bcodmo_name "latitude";
Float64 colorBarMaximum 90.0;
Float64 colorBarMinimum -90.0;
String description "Latitude of study site";
String ioos_category "Location";
String long_name "Latitude";
String nerc_identifier "https://vocab.nerc.ac.uk/collection/P09/current/LATX/";
String standard_name "latitude";
String units "degrees_north";
}
longitude {
String _CoordinateAxisType "Lon";
Float64 _FillValue NaN;
Float64 actual_range 134.494, 134.521;
String axis "X";
String bcodmo_name "longitude";
Float64 colorBarMaximum 180.0;
Float64 colorBarMinimum -180.0;
String description "Longitude of study site";
String ioos_category "Location";
String long_name "Longitude";
String nerc_identifier "https://vocab.nerc.ac.uk/collection/P09/current/LONX/";
String standard_name "longitude";
String units "degrees_east";
}
density {
Float32 _FillValue NaN;
Float32 actual_range 1.11, 1.49;
String bcodmo_name "density";
String description "Coral skeletal density";
String long_name "Density";
String units "grams per cubic centimeter (g cm-3)";
}
extension {
Float32 _FillValue NaN;
Float32 actual_range 0.73, 1.34;
String bcodmo_name "unknown";
String description "Coral skeletal extension rate";
String long_name "Extension";
String units "centimeters per year (cm yr-1)";
}
calcification {
Float32 _FillValue NaN;
Float32 actual_range 0.89, 1.65;
String bcodmo_name "unknown";
String description "Coral calcification rate";
String long_name "Calcification";
String units "grams per square centimeter per year (g cm-2 yr-1)";
}
tissue_layer {
Float32 _FillValue NaN;
Float32 actual_range 2.5, 4.9;
String bcodmo_name "unknown";
String description "Coral tissue layer thickness";
String long_name "Tissue Layer";
String units "millimeters (mm)";
}
dissepiments_11_2013 {
Byte _FillValue 127;
String _Unsigned "false";
Byte actual_range 1, 6;
String bcodmo_name "unknown";
String description "Dissepiments above stain Nov. 2013";
String long_name "Dissepiments 11 2013";
String units "unitless (counts)";
}
dissepiments_01_2015 {
Byte _FillValue 127;
String _Unsigned "false";
Byte actual_range 16, 22;
String bcodmo_name "unknown";
String description "Dissepiments above stain Jan. 2015";
String long_name "Dissepiments 01 2015";
String units "unitless (counts)";
}
dissepiments_formed {
Byte _FillValue 127;
String _Unsigned "false";
Byte actual_range 14, 16;
String bcodmo_name "unknown";
String description "Dissepiments formed Nov. 2013 to Jan. 2015";
String long_name "Dissepiments Formed";
String units "unitless (counts)";
}
}
NC_GLOBAL {
String access_formats ".htmlTable,.csv,.json,.mat,.nc,.tsv,.esriCsv,.geoJson";
String acquisition_description
"During 27\\u201328 April 2013, twenty Porites colonies living at 1\\u20135 m
depths in the Republic of Palau were stained with alizarin red-S dye. We
stained 20 colonies, 10 each in Nikko Bay (7.323N, 134.494E) and on Uchelbeluu
reef (7.267N, 134.521E).\\u00a0Ten of the 20 colonies initially stained were
located during subsequent sampling expeditions but we were unable to locate
the ten remaining colonies, likely because either the tags or the colonies
themselves were dislodged during storms.\\u00a0The skeletons of nine of the 20
stained colonies were located and sampled twice, on 4 November 2013 and
9\\u201310 January 2015, to measure the number of dissepiments formed over
time.
Dissepiments were counted in stained Porites corals to determine the frequency
of dissepiment formation. Skeletal cores were extracted from living colonies
previously stained with alizarin dye. The cores were sectioned and polished,
and dissepiments were counted from microscope images.\\u2028
See related dataset for\\u00a0[coral dissepiment spacing](\\\\\"https://www.bco-
dmo.org/dataset/688052\\\\\")\\u00a0([https://www.bco-
dmo.org/dataset/688052](\\\\\"https://www.bco-dmo.org/dataset/688052\\\\\")).";
String awards_0_award_nid "687812";
String awards_0_award_number "OCE-1605365";
String awards_0_data_url "http://www.nsf.gov/awardsearch/showAward.do?AwardNumber=1605365";
String awards_0_funder_name "NSF Division of Ocean Sciences";
String awards_0_funding_acronym "NSF OCE";
String awards_0_funding_source_nid "355";
String awards_0_program_manager "David L. Garrison";
String awards_0_program_manager_nid "50534";
String cdm_data_type "Other";
String comment
"Palau Staining Experiment
Dissepiment Counts
PI: Anne Cohen (WHOI)
Version: 21 April 2017";
String Conventions "COARDS, CF-1.6, ACDD-1.3";
String creator_email "info@bco-dmo.org";
String creator_name "BCO-DMO";
String creator_type "institution";
String creator_url "https://www.bco-dmo.org/";
String data_source "extract_data_as_tsv version 2.3 19 Dec 2019";
String date_created "2017-04-21T20:01:53Z";
String date_modified "2019-08-02T19:16:53Z";
String defaultDataQuery "&time<now";
String doi "10.1575/1912/bco-dmo.688125.1";
Float64 Easternmost_Easting 134.521;
Float64 geospatial_lat_max 7.323;
Float64 geospatial_lat_min 7.267;
String geospatial_lat_units "degrees_north";
Float64 geospatial_lon_max 134.521;
Float64 geospatial_lon_min 134.494;
String geospatial_lon_units "degrees_east";
String history
"2024-12-19T23:51:36Z (local files)
2024-12-19T23:51:36Z https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_688125.html";
String infoUrl "https://www.bco-dmo.org/dataset/688125";
String institution "BCO-DMO";
String instruments_0_dataset_instrument_description "The cores were sectioned and polished, and dissepiments were counted from microscope images.";
String instruments_0_dataset_instrument_nid "688131";
String instruments_0_description "Instruments that generate enlarged images of samples using the phenomena of reflection and absorption of visible light. Includes conventional and inverted instruments. Also called a \"light microscope\".";
String instruments_0_instrument_external_identifier "https://vocab.nerc.ac.uk/collection/L05/current/LAB05/";
String instruments_0_instrument_name "Microscope-Optical";
String instruments_0_instrument_nid "708";
String keywords "bco, bco-dmo, biological, calcification, chemical, coral, coral_id, data, dataset, density, dissepiments, dissepiments_01_2015, dissepiments_11_2013, dissepiments_formed, dmo, erddap, extension, formed, latitude, layer, longitude, management, oceanography, office, preliminary, site, tissue, tissue_layer";
String license "https://www.bco-dmo.org/dataset/688125/license";
String metadata_source "https://www.bco-dmo.org/api/dataset/688125";
Float64 Northernmost_Northing 7.323;
String param_mapping "{'688125': {'lat': 'master - latitude', 'lon': 'master - longitude'}}";
String parameter_source "https://www.bco-dmo.org/mapserver/dataset/688125/parameters";
String people_0_affiliation "Woods Hole Oceanographic Institution";
String people_0_affiliation_acronym "WHOI";
String people_0_person_name "Anne L Cohen";
String people_0_person_nid "51428";
String people_0_role "Principal Investigator";
String people_0_role_type "originator";
String people_1_affiliation "Woods Hole Oceanographic Institution";
String people_1_affiliation_acronym "WHOI BCO-DMO";
String people_1_person_name "Shannon Rauch";
String people_1_person_nid "51498";
String people_1_role "BCO-DMO Data Manager";
String people_1_role_type "related";
String project "Coral Reef Resilience";
String projects_0_acronym "Coral Reef Resilience";
String projects_0_description
"This project supports a 7 day expedition to the heart of the central tropical Pacific during a particularly strong El Niño event, arguably one of the strongest on record. The target is Jarvis Island, located in the path of the cool, nutrient-rich Equatorial Under-Current (EUC). As a consequence of its location, Jarvis, a pristine, uninhabited coral reef ecosystem, is characterized by enhanced productivity, high densities of large predatory fish, turtles, corals and other sea life. However, sea surface temperatures on Jarvis are currently 3.9 degrees Celsius higher than normal for this time of year, due to El Niño. This provides investigators with a unique opportunity to examine how a highly productive reef ecosystem responds to ocean warming, and the mechanisms and timescales for recovery. Information will be collected by deploying state-of-the-art instrumentation on the reef, and sampling seawater, particulates, plankton and corals from surface to 150 meters depth. This will be the first expedition to Jarvis Island during a bleaching event. The US Pacific Remote Island Marine National Monument (PRIMNM) was recently expanded as part of a multi-national commitment to protect and preserve vast areas of our ocean and ocean resources for future generations. However, these protections do not shield ocean ecosystems from the impacts of 21st century climate change. The project investigates the potential for simultaneous changes in equatorial ocean circulation to lessen the impacts of the global warming for equatorial reefs. It tests hypotheses that improve understanding of fundamental mechanisms of coral reef resilience to climate change, and the ability to identify such reef systems for inclusion in Protected Area Networks. The cruise supports the training of four PhD students, three of whom are National Science Foundation / National Defense Science and Engineering graduate research fellows, and provide material in support of six PhD theses. Results will be shared at international meetings and workshops, and published in peer-reviewed journals. All data collected and generated from the cruise will be made publicly available via the Biological and Chemical Oceanography Data Management Office.
Global climate models project enhanced warming of the central tropical Pacific over this century. By implication, waters bathing five out of the seven coral reef ecosystems protected within the recently expanded PRIMNM, will warm by more than 3 degrees Celsius. This rate of warming far exceeds the known thermal tolerances of reef-building corals, fueling concerns that these reefs may not survive 21st century climate change. However the same models project a concurrent strengthening of the EUC, a projection supported by observations. The EUC carries cool, nutrient-rich waters that upwell on the west sides of the equatorial islands, cooling the reefs and enhancing productivity locally. If the GCM projections are realized, a strengthening EUC could modulate the impact of ocean warming for these reefs by reducing the rate of warming and supporting energetically replete coral communities that survive bleaching. This proposal exploits the current El Niño state of the tropical Pacific to test the following hypotheses: (1) Coral communities bathed in the nutrient-rich, productive waters of the central equatorial Pacific bleach during every El Niño, but mortality is low and as a result, percent live cover remains high. (2) Localized EUC-enhanced productivity supports nutritionally replete coral communities, which metabolize existing lipid reserves to support energetic requirements during bleaching. (3) In addition, equatorial corals adopt a flexible feeding strategy, switching from direct nitrate uptake during nitrogen-rich (greater than 5 micromolar nitrate) La Niña conditions to heterotrophic feeding during nitrogen-\"poor\" (less than 3 micromolar nitrate) El Niño conditions. We propose that, fueled by exogenous sources, equatorial Pacific coral communities survive bleaching with limited mortality, coral cover remains high and coral growth rates quickly recover. If data generated under this project support our hypotheses, then the combination of oceanographic and political protections could maximize the potential for coral reef survival through the 21st century.";
String projects_0_end_date "2016-11";
String projects_0_geolocation "Central Tropical Pacific";
String projects_0_name "Can Coral Reefs in the Central Pacific Survive Ocean Warming? A 2015 El Nino Test";
String projects_0_project_nid "687813";
String projects_0_start_date "2015-12";
String publisher_name "Biological and Chemical Oceanographic Data Management Office (BCO-DMO)";
String publisher_type "institution";
String sourceUrl "(local files)";
Float64 Southernmost_Northing 7.267;
String standard_name_vocabulary "CF Standard Name Table v55";
String summary "Dissepiment counts obtained from staining experiment of Porites coral from Palau.";
String title "[Palau dissepiment counts] - Dissepiment counts obtained from staining experiment of Porites coral from Palau (Can Coral Reefs in the Central Pacific Survive Ocean Warming? A 2015 El Nino Test)";
String version "1";
Float64 Westernmost_Easting 134.494;
String xml_source "osprey2erddap.update_xml() v1.3";
}
}
Data Access Protocol (DAP) and its
selection constraints.
The URL specifies what you want: the dataset, a description of the graph or the subset of the data, and the file type for the response.
Tabledap request URLs must be in the form
https://coastwatch.pfeg.noaa.gov/erddap/tabledap/datasetID.fileType{?query}
For example,
https://coastwatch.pfeg.noaa.gov/erddap/tabledap/pmelTaoDySst.htmlTable?longitude,latitude,time,station,wmo_platform_code,T_25&time>=2015-05-23T12:00:00Z&time<=2015-05-31T12:00:00Z
Thus, the query is often a comma-separated list of desired variable names,
followed by a collection of
constraints (e.g., variable<value),
each preceded by '&' (which is interpreted as "AND").
For details, see the tabledap Documentation.