Accessing BCO-DMO data
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BCO-DMO ERDDAP
Accessing BCO-DMO data |
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| Dataset Title: | [Video transects (Wood Fall project)] - Video transects (Wood Fall project) (The energetic assembly of biological communities: a test with deep- sea woodfalls) 
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| Institution: | BCO-DMO (Dataset ID: bcodmo_dataset_714536) |
| Information: | Summary
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| FGDC
| ISO 19115
| Metadata
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Attributes {
s {
transect_number {
String bcodmo_name "sample";
String description "Transect number";
String long_name "Transect Number";
String nerc_identifier "https://vocab.nerc.ac.uk/collection/P02/current/ACYC/";
String units "unitless";
}
date {
String bcodmo_name "date";
String description "Date of ROV dive in the format YYYY-MM-DD.";
String long_name "Date";
String nerc_identifier "https://vocab.nerc.ac.uk/collection/P01/current/ADATAA01/";
String source_name "date";
String time_precision "1970-01-01";
String units "unitless";
}
rov_dive {
String bcodmo_name "dive_id";
String description "Number and letter designation of ROV and dive number for deployment. GE refers to Oceaneering's Global Explorer.";
String long_name "Rov Dive";
String units "dimensionless";
}
start_time {
String bcodmo_name "time_start";
String description "Transect start time";
String long_name "Start Time";
String units "hh:mm";
}
end_time {
String bcodmo_name "time_end";
String description "Transect end time";
String long_name "End Time";
String units "hh:mm";
}
latitude {
String _CoordinateAxisType "Lat";
Float64 _FillValue NaN;
Float64 actual_range 27.13516, 28.81147;
String axis "Y";
String bcodmo_name "lat_start";
Float64 colorBarMaximum 90.0;
Float64 colorBarMinimum -90.0;
String description "Starting latitude of the transect";
String ioos_category "Location";
String long_name "Latitude";
String nerc_identifier "https://vocab.nerc.ac.uk/collection/P09/current/LATX/";
String source_name "start_latitude";
String standard_name "latitude";
String units "degrees_north";
}
end_latitude {
Float32 _FillValue NaN;
Float32 actual_range 27.13567, 28.81099;
String bcodmo_name "lat_end";
Float64 colorBarMaximum 90.0;
Float64 colorBarMinimum -90.0;
String description "Ending latitude of the transect";
String long_name "Latitude";
String nerc_identifier "https://vocab.nerc.ac.uk/collection/P09/current/LATX/";
String standard_name "latitude";
String units "decimal degrees";
}
longitude {
String _CoordinateAxisType "Lon";
Float64 _FillValue NaN;
Float64 actual_range -89.92766, -88.36303;
String axis "X";
String bcodmo_name "lon_start";
Float64 colorBarMaximum 180.0;
Float64 colorBarMinimum -180.0;
String description "Starting longitude of the transect";
String ioos_category "Location";
String long_name "Longitude";
String nerc_identifier "https://vocab.nerc.ac.uk/collection/P09/current/LONX/";
String source_name "start_longitude";
String standard_name "longitude";
String units "degrees_east";
}
end_longitude {
Float32 _FillValue NaN;
Float32 actual_range -89.92765, -88.36318;
String bcodmo_name "lon_end";
Float64 colorBarMaximum 180.0;
Float64 colorBarMinimum -180.0;
String description "Ending longitude of the transect";
String long_name "Longitude";
String nerc_identifier "https://vocab.nerc.ac.uk/collection/P09/current/LONX/";
String standard_name "longitude";
String units "decimal degrees";
}
heading {
Float32 _FillValue NaN;
Float32 actual_range 9.0, 337.5;
String bcodmo_name "heading";
String description "Heading in degrees the ROV is transited on";
String long_name "Heading";
String units "degrees";
}
start_depth {
Int16 _FillValue 32767;
Int16 actual_range 1498, 2179;
String bcodmo_name "depth_begin";
String description "Starting depth of the transect in meters";
String long_name "Start Depth";
String units "meters";
}
depth {
String _CoordinateAxisType "Height";
String _CoordinateZisPositive "down";
Float64 _FillValue NaN;
Float64 actual_range 1499.0, 3035.0;
String axis "Z";
String bcodmo_name "depth_end";
String description "Ending depth of the transect in meters";
String ioos_category "Location";
String long_name "End Depth";
String positive "down";
String standard_name "depth";
String units "m";
}
}
NC_GLOBAL {
String access_formats ".htmlTable,.csv,.json,.mat,.nc,.tsv,.esriCsv,.geoJson";
String acquisition_description
"See description of video transect method in:
McClain, C.R. and L. Lundsten (2015) Assemblage structure is related to slope
and depth on a deep offshore Pacific seamount chain. Marine Ecology
36:210-220.
DOI: [10.1111/maec.12136](\\\\\"https://doi.org/10.1111/maec.12136\\\\\")
McClain, C.R., L. Lundsten, J. Barry, and A. DeVogelaere
(2010)\\u00a0Assemblage structure, but not diversity or density, change with
depth on a northeast Pacific seamount.\\u00a0Marine Ecology, 31:1-12.
DOI:
[10.1111/j.1439-0485.2010.00367.x](\\\\\"https://doi.org/10.1111/j.1439-0485.2010.00367.x\\\\\")
McClain, C.R.\\u00a0and Barry, J.P (2010)\\u00a0Habitat heterogeneity, biogenic
disturbance, and resource availability work in concert to regulate
biodiversity in deep submarine canyons.\\u00a0Ecology,\\u00a091:964-976.
DOI: [10.1890/09-0087.1](\\\\\"https://doi.org/10.1890/09-0087.1\\\\\")
McClain, C.R., L. Lundsten, M. Ream, J. Barry, and A. DeVogelaere (2009)
Endemicity, Biogeography, Composition, and Community Structure On a Northeast
Pacific Seamount. PLoS One, 4:e4141.
DOI:
[10.1371/journal.pone.0004141](\\\\\"https://doi.org/10.1371/journal.pone.0004141\\\\\")";
String awards_0_award_nid "713951";
String awards_0_award_number "OCE-1634586";
String awards_0_data_url "http://www.nsf.gov/awardsearch/showAward.do?AwardNumber=1634586";
String awards_0_funder_name "NSF Division of Ocean Sciences";
String awards_0_funding_acronym "NSF OCE";
String awards_0_funding_source_nid "355";
String awards_0_program_manager "Michael E. Sieracki";
String awards_0_program_manager_nid "50446";
String cdm_data_type "Other";
String comment
"Information for video transects collected by ROV Global Explorer during PE17_22 (Wood Fall project)
PIs: Craig R. MCClain (LUMCON) and Seth D. Newsome (UNM)
Contact: Clifton C. Nunnally (LUMCON)
Version: 2017-09-15
All missing data denoted with nd. NA refers to a data field that is not applicable.";
String Conventions "COARDS, CF-1.6, ACDD-1.3";
String creator_email "info@bco-dmo.org";
String creator_name "BCO-DMO";
String creator_type "institution";
String creator_url "https://www.bco-dmo.org/";
String data_source "extract_data_as_tsv version 2.3 19 Dec 2019";
String date_created "2017-09-11T19:27:31Z";
String date_modified "2019-06-12T17:28:20Z";
String defaultDataQuery "&time<now";
String doi "10.1575/1912/bco-dmo.714536.1";
Float64 Easternmost_Easting -88.36303;
Float64 geospatial_lat_max 28.81147;
Float64 geospatial_lat_min 27.13516;
String geospatial_lat_units "degrees_north";
Float64 geospatial_lon_max -88.36303;
Float64 geospatial_lon_min -89.92766;
String geospatial_lon_units "degrees_east";
Float64 geospatial_vertical_max 3035.0;
Float64 geospatial_vertical_min 1499.0;
String geospatial_vertical_positive "down";
String geospatial_vertical_units "m";
String history
"2024-11-21T11:44:42Z (local files)
2024-11-21T11:44:42Z https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_714536.html";
String infoUrl "https://www.bco-dmo.org/dataset/714536";
String institution "BCO-DMO";
String instruments_0_dataset_instrument_nid "714539";
String instruments_0_instrument_name "ROV Global Explorer";
String instruments_0_instrument_nid "714229";
String instruments_0_supplied_name "ROV Global Explorer";
String instruments_1_dataset_instrument_description "Elevator used was a aluminum work basket suspended from the vessel’s winch. The elevator was special build for PI McClain by Theriot Machine Works (Chauvin, LA). The basket is rectangular in shape with an A-frame frame pick point and 2 independent doors on either side of A-frame. Total length is 1.96 meters, width of basket is 1.33 meters and height of basket enclosure is 0.96 meters. Maximum height at pick point is 1.85 meters. The basket lids on either side of the a-frame swivel on dual hinges and open fully to touch the a-frame where they are held in place by attached magnetic strips. Each lid has a width of 1.25 meters and a depth of 0.765 meters.";
String instruments_1_dataset_instrument_nid "716634";
String instruments_1_description "A platform used to carry equipment and sampled from the surface to the seafloor and back up again.";
String instruments_1_instrument_name "Benthic elevator";
String instruments_1_instrument_nid "714940";
String instruments_1_supplied_name "McClain benthic elevator";
String keywords "bco, bco-dmo, biological, chemical, data, dataset, date, depth, dive, dmo, end, end_depth, end_latitude, end_longitude, end_time, erddap, heading, latitude, longitude, management, number, oceanography, office, operated, preliminary, remotely, rov, rov_dive, start, start_depth, start_time, time, transect, transect_number, vessel";
String license "https://www.bco-dmo.org/dataset/714536/license";
String metadata_source "https://www.bco-dmo.org/api/dataset/714536";
Float64 Northernmost_Northing 28.81147;
String param_mapping "{'714536': {'start_longitude': 'flag - longitude', 'end_depth': 'flag - depth', 'start_latitude': 'flag - latitude'}}";
String parameter_source "https://www.bco-dmo.org/mapserver/dataset/714536/parameters";
String people_0_affiliation "Louisiana Universities Marine Consortium";
String people_0_affiliation_acronym "LUMCON";
String people_0_person_name "Dr Craig McClain";
String people_0_person_nid "713955";
String people_0_role "Principal Investigator";
String people_0_role_type "originator";
String people_1_affiliation "University of New Mexico";
String people_1_affiliation_acronym "UNM";
String people_1_person_name "Dr Seth D. Newsome";
String people_1_person_nid "713957";
String people_1_role "Co-Principal Investigator";
String people_1_role_type "originator";
String people_2_affiliation "Louisiana Universities Marine Consortium";
String people_2_affiliation_acronym "LUMCON";
String people_2_person_name "Dr Clifton C. Nunnally";
String people_2_person_nid "713960";
String people_2_role "Contact";
String people_2_role_type "related";
String people_3_affiliation "Woods Hole Oceanographic Institution";
String people_3_affiliation_acronym "WHOI BCO-DMO";
String people_3_person_name "Megan Switzer";
String people_3_person_nid "708683";
String people_3_role "BCO-DMO Data Manager";
String people_3_role_type "related";
String project "Wood Fall";
String projects_0_acronym "Wood Fall";
String projects_0_description
"Changes in both terrestrial and marine carbon production under climate change necessitate an understanding of how ecological communities are structured by carbon availability, which has long been recognized as a predictor of biodiversity. Recent research indicates global marine phytoplankton production may have declined at a rate of ~1% of the global median per year. Regional-scale changes have been more heterogeneous; with the equatorial Pacific Ocean experiencing overall declines of over 50% the last decade and Polar Regions experiencing increases of comparable magnitude. Clearly, there is a strong need for a more complete understanding of the relationship between biodiversity and carbon availability to better predict the consequences of current and forthcoming climate change on marine ecosystems. One challenge is that determinants of available carbon in natural systems are diverse and often unidentifiable. Wood-fall communities in the deep sea are an ideal experimental system for testing many theories about carbon availability and biodiversity. First, the amount of carbon available to the community can be precisely manipulated in the form of wood mass. Second, flows of carbon from wood through the community can be easily tracked because animals supported by wood have distinct chemical signatures that can be traced with stable isotope analysis. Finally, the entire community associated with a wood fall can be sampled, allowing for accurate estimates of biodiversity, biomass, and energy flow. For these reasons, study of deep-sea wood falls provides accurate and simultaneous quantification of standing stock, diversity, and trophic structure as a function of energy availability. Through the use of ROV/submersible-deployed wood falls, the project will test how changes in carbon availability impact marine biodiversity. The results of this project will be beneficial to science in several ways. First, the project contributes significantly to climate change and biodiversity research and specifically to knowledge of the underexplored deep oceans. The project also creates abundant opportunities for public outreach. The multifaceted approach includes: employing web podcasts and blogs; sharing results through photographic exhibitions; and actively recruiting from minority-serving institutions while also providing visiting lectureships. Further, the project will recruit and train young scientists in underrepresented groups, and impact multiple audiences from primary education students, science instructors, and the general public.
The goal of this project is to identify the interactions in energetic processes that regulate community structure, using ROV/submersible-deployed wood falls. Wood will be deployed in varying sizes to control the amount of chemical energy added to the community, and of different wood densities to examine assembly rules while examining total quantity and concentration of resources. This approach will allow the investigators to examining energetic tradeoffs is that multiple impacts, hypotheses, and theories of varying carbon availability on biodiversity can be evaluated simultaneously. The amount of carbon in the community can be precisely manipulated, an improvement over prior studies. The impact of the rate of carbon uptake on ecological processes will also be examined here, but has been rarely evaluated. This research will also reveal much about wood-fall biomes in the deep sea, one of the least studied systems in the ocean. For example, the project will reveal the relative importance different carbon pathways in exporting wood energy and controlling biodiversity.";
String projects_0_end_date "2017-08";
String projects_0_geolocation "Northern Gulf of Mexico Continental Slope";
String projects_0_name "The energetic assembly of biological communities: a test with deep-sea woodfalls";
String projects_0_project_nid "713952";
String projects_0_start_date "2016-10";
String publisher_name "Biological and Chemical Oceanographic Data Management Office (BCO-DMO)";
String publisher_type "institution";
String sourceUrl "(local files)";
Float64 Southernmost_Northing 27.13516;
String standard_name_vocabulary "CF Standard Name Table v55";
String summary "Video transects (Wood Fall project)";
String title "[Video transects (Wood Fall project)] - Video transects (Wood Fall project) (The energetic assembly of biological communities: a test with deep-sea woodfalls)";
String version "1";
Float64 Westernmost_Easting -89.92766;
String xml_source "osprey2erddap.update_xml() v1.3";
}
}
Data Access Protocol (DAP) and its
selection constraints.
The URL specifies what you want: the dataset, a description of the graph or the subset of the data, and the file type for the response.
Tabledap request URLs must be in the form
https://coastwatch.pfeg.noaa.gov/erddap/tabledap/datasetID.fileType{?query}
For example,
https://coastwatch.pfeg.noaa.gov/erddap/tabledap/pmelTaoDySst.htmlTable?longitude,latitude,time,station,wmo_platform_code,T_25&time>=2015-05-23T12:00:00Z&time<=2015-05-31T12:00:00Z
Thus, the query is often a comma-separated list of desired variable names,
followed by a collection of
constraints (e.g., variable<value),
each preceded by '&' (which is interpreted as "AND").
For details, see the tabledap Documentation.