Accessing BCO-DMO data
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BCO-DMO ERDDAP
Accessing BCO-DMO data |
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| Dataset Title: | Photosynthetic pigment concentrations in Plocamium cartilagineum, trials 3-8, 2014-2015 (Seaweed OA Resilience project) 
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| Institution: | BCO-DMO (Dataset ID: bcodmo_dataset_731213) |
| Information: | Summary
| License
| ISO 19115
| Metadata
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Attributes {
s {
Trial {
Byte _FillValue 127;
Byte actual_range 3, 8;
String bcodmo_name "exp_id";
String description "Experimental trial - Plocamium";
String long_name "Trial";
String units "unitless";
}
Pot_ID {
Byte _FillValue 127;
Byte actual_range 0, 9;
String bcodmo_name "sample";
String description "Number ID of culture pot: integer (0-9) 0 denotes initial pre-experiment state";
String long_name "Pot ID";
String nerc_identifier "https://vocab.nerc.ac.uk/collection/P02/current/ACYC/";
String units "unitless";
}
Plant_ID {
Byte _FillValue 127;
Byte actual_range 1, 15;
String bcodmo_name "sample";
String description "Replicate ID in treatment";
String long_name "Plant ID";
String nerc_identifier "https://vocab.nerc.ac.uk/collection/P02/current/ACYC/";
String units "unitless";
}
Chl_a {
Float32 _FillValue NaN;
Float32 actual_range 11.5159, 450.7328;
String bcodmo_name "chlorophyll a";
Float64 colorBarMaximum 30.0;
Float64 colorBarMinimum 0.03;
String colorBarScale "Log";
String description "Chlorophyll a concentration";
String long_name "Concentration Of Chlorophyll In Sea Water";
String nerc_identifier "https://vocab.nerc.ac.uk/collection/P01/current/CPHLHPP1/";
String units "micrograms/gram fresh weight";
}
PE {
Float64 _FillValue NaN;
Float64 actual_range 21.0532, 1053.3171;
String bcodmo_name "pigment_concentration";
String description "Phycoerythrin concentration";
String long_name "PE";
String nerc_identifier "https://vocab.nerc.ac.uk/collection/P02/current/OPWC/";
String units "micrograms/gram fresh weight";
}
PC {
Float32 _FillValue NaN;
Float32 actual_range 0.0, 468.3999;
String bcodmo_name "pigment_concentration";
String description "Phycocyanin concentration";
String long_name "PC";
String nerc_identifier "https://vocab.nerc.ac.uk/collection/P02/current/OPWC/";
String units "micrograms/gram fresh weight";
}
APC {
Float64 _FillValue NaN;
Float64 actual_range 0.0, 1802.243;
String bcodmo_name "pigment_concentration";
String description "Allophycocyanin concentration";
String long_name "APC";
String nerc_identifier "https://vocab.nerc.ac.uk/collection/P02/current/OPWC/";
String units "micrograms/gram fresh weight";
}
Total_PB {
Float64 _FillValue NaN;
Float64 actual_range 42.7051, 3216.2617;
String bcodmo_name "pigment_concentration";
String description "Total Phycobiliprotein concentration";
String long_name "Total PB";
String nerc_identifier "https://vocab.nerc.ac.uk/collection/P02/current/OPWC/";
String units "micrograms/gram fresh weight";
}
PB_ChlA_ratio {
Float32 _FillValue NaN;
Float32 actual_range 0.3609, 76.5311;
String bcodmo_name "pigment_concentration";
Float64 colorBarMaximum 30.0;
Float64 colorBarMinimum 0.03;
String colorBarScale "Log";
String description "Ratio of total Phycobiliprotein to Chlorophyll A";
String long_name "Concentration Of Chlorophyll In Sea Water";
String nerc_identifier "https://vocab.nerc.ac.uk/collection/P02/current/OPWC/";
String units "dimensionless";
}
}
NC_GLOBAL {
String access_formats ".htmlTable,.csv,.json,.mat,.nc,.tsv";
String acquisition_description
"Plocamium cartilagineum was collected from Catalina Island in June - Nov. 2014
and Jan. 2015.
Culture pots were placed in large thermally insulated coolers in a
temperature-controlled water bath at either 15 or 20\\u00b0C under saturating
illumination of ~150 \\u00b5moles photons/m^2/s. pCO2 treatments were supplied
to closed culture pots by use of a gas mixing system combining Nitrogen,
Oxygen and Carbon Dioxide to specific CO2 partial pressures, 20.9% oxygen and
the balance being Nitrogen.
Chlorophyll a concentrations were determined using the method of Duncan and
Harrison (1982). Phycobiliprotein concentrations determined using the method
of Rosenberg (1981).
Note: Trial 1 was a pilot test of culture system and methodological procedures
so was not used for data collection in the testing of hypotheses.
See Supplemental Files for a table of culture conditions for each of\\u00a0the
8 trials (pdf).";
String awards_0_award_nid "55177";
String awards_0_award_number "OCE-1316198";
String awards_0_data_url "http://www.nsf.gov/awardsearch/showAward?AWD_ID=1316198";
String awards_0_funder_name "NSF Division of Ocean Sciences";
String awards_0_funding_acronym "NSF OCE";
String awards_0_funding_source_nid "355";
String awards_0_program_manager "David L. Garrison";
String awards_0_program_manager_nid "50534";
String cdm_data_type "Other";
String comment
"Photosynthetic pigment concentrations in Plocamium cartilagineum_trials_3-8
PI's: J. Kubler, S. Dudgeon (CSU-Northridge)
version: 2018-03-19";
String Conventions "COARDS, CF-1.6, ACDD-1.3";
String creator_email "info@bco-dmo.org";
String creator_name "BCO-DMO";
String creator_type "institution";
String creator_url "https://www.bco-dmo.org/";
String data_source "extract_data_as_tsv version 2.3 19 Dec 2019";
String date_created "2018-03-20T19:08:42Z";
String date_modified "2019-06-03T17:58:58Z";
String defaultDataQuery "&time<now";
String doi "10.1575/1912/bco-dmo.731213.1";
String history
"2024-04-19T20:22:57Z (local files)
2024-04-19T20:22:57Z https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_731213.html";
String infoUrl "https://www.bco-dmo.org/dataset/731213";
String institution "BCO-DMO";
String instruments_0_acronym "UV Spectrophotometer-Shimadzu";
String instruments_0_dataset_instrument_description "Used to measure concentrations of pigments.";
String instruments_0_dataset_instrument_nid "731222";
String instruments_0_description "The Shimadzu UV Spectrophotometer is manufactured by Shimadzu Scientific Instruments (ssi.shimadzu.com). Shimadzu manufacturers several models of spectrophotometer; refer to dataset for make/model information.";
String instruments_0_instrument_external_identifier "https://vocab.nerc.ac.uk/collection/L05/current/LAB20/";
String instruments_0_instrument_name "UV Spectrophotometer-Shimadzu";
String instruments_0_instrument_nid "595";
String instruments_0_supplied_name "Shimadzu UV-2450 UV-visible spectrophotometer";
String keywords "apc, bco, bco-dmo, biological, chemical, chemistry, Chl_a, chlorophyll, concentration, concentration_of_chlorophyll_in_sea_water, data, dataset, dmo, earth, Earth Science > Oceans > Ocean Chemistry > Chlorophyll, erddap, management, ocean, oceanography, oceans, office, PB_ChlA_ratio, plant, Plant_ID, pot, Pot_ID, preliminary, science, sea, seawater, total, Total_PB, trial, water";
String keywords_vocabulary "GCMD Science Keywords";
String license "https://www.bco-dmo.org/dataset/731213/license";
String metadata_source "https://www.bco-dmo.org/api/dataset/731213";
String param_mapping "{'731213': {}}";
String parameter_source "https://www.bco-dmo.org/mapserver/dataset/731213/parameters";
String people_0_affiliation "California State University Northridge";
String people_0_affiliation_acronym "CSU-Northridge";
String people_0_person_name "Dr Janet E Kubler";
String people_0_person_nid "51681";
String people_0_role "Principal Investigator";
String people_0_role_type "originator";
String people_1_affiliation "California State University Northridge";
String people_1_affiliation_acronym "CSU-Northridge";
String people_1_person_name "Dr Steve Dudgeon";
String people_1_person_nid "51682";
String people_1_role "Co-Principal Investigator";
String people_1_role_type "originator";
String people_2_affiliation "Woods Hole Oceanographic Institution";
String people_2_affiliation_acronym "WHOI BCO-DMO";
String people_2_person_name "Nancy Copley";
String people_2_person_nid "50396";
String people_2_role "BCO-DMO Data Manager";
String people_2_role_type "related";
String project "Seaweed OA Resilience";
String projects_0_acronym "Seaweed OA Resilience";
String projects_0_description "Benthic macroalgae contribute to intensely productive near shore ecosystems and little is known about the potential effects of ocean acidification on non-calcifying macroalgae. Kübler and Dudgeon will test hypotheses about two macroalgae, Ulva spp. and Plocamium cartilagineum, which, for different reasons, are hypothesized to be more productive and undergo ecological expansions under predicted changes in ocean chemistry. They have designed laboratory culture-based experiments to quantify the scope for response to ocean acidification in Plocamium, which relies solely on diffusive uptake of CO2, and populations of Ulva spp., which have an inducible concentrating mechanism (CCM). The investigators will culture these algae in media equilibrated at 8 different pCO2 levels ranging from 380 to 940 ppm to address three key hypotheses. The first is that macroalgae (such as Plocamium cartilagineum) that are not able to acquire inorganic carbon in changed form will benefit, in terms of photosynthetic and growth rates, from ocean acidification. There is little existing data to support this common assumption. The second hypothesis is that enhanced growth of Ulva sp. under OA will result from the energetic savings from down regulating the CCM, rather than from enhanced photosynthesis per se. Their approach will detect existing genetic variation for adaptive plasticity. The third key hypothesis to be addressed in short-term culture experiments is that there will be a significant interaction between ocean acidification and nitrogen limited growth of Ulva spp., which are indicator species of eutrophication. Kübler and Dudgeon will be able to quantify the individual effects of ocean acidification and nitrogenous nutrient addition on Ulva spp. and also, the synergistic effects, which will inevitably apply in many highly productive, shallow coastal areas. The three hypotheses being addressed have been broadly identified as urgent needs in our growing understanding of the impacts of ocean acidification.";
String projects_0_end_date "2016-05";
String projects_0_geolocation "Temperate coastal waters of the USA (30 - 45 N latitude, -66 to -88 W and -117 to -125 W longitude)";
String projects_0_name "Ocean Acidification: Scope for Resilience to Ocean Acidification in Macroalgae";
String projects_0_project_nid "2275";
String projects_0_start_date "2013-06";
String publisher_name "Biological and Chemical Oceanographic Data Management Office (BCO-DMO)";
String publisher_type "institution";
String sourceUrl "(local files)";
String standard_name_vocabulary "CF Standard Name Table v55";
String summary "Photosynthetic pigment concentrations in Plocamium cartilagineum, trials 3-8, 2014-2015.";
String title "Photosynthetic pigment concentrations in Plocamium cartilagineum, trials 3-8, 2014-2015 (Seaweed OA Resilience project)";
String version "1";
String xml_source "osprey2erddap.update_xml() v1.3";
}
}
Data Access Protocol (DAP) and its
selection constraints.
The URL specifies what you want: the dataset, a description of the graph or the subset of the data, and the file type for the response.
Tabledap request URLs must be in the form
https://coastwatch.pfeg.noaa.gov/erddap/tabledap/datasetID.fileType{?query}
For example,
https://coastwatch.pfeg.noaa.gov/erddap/tabledap/pmelTaoDySst.htmlTable?longitude,latitude,time,station,wmo_platform_code,T_25&time>=2015-05-23T12:00:00Z&time<=2015-05-31T12:00:00Z
Thus, the query is often a comma-separated list of desired variable names,
followed by a collection of
constraints (e.g., variable<value),
each preceded by '&' (which is interpreted as "AND").
For details, see the tabledap Documentation.