Accessing BCO-DMO data
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BCO-DMO ERDDAP
Accessing BCO-DMO data |
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| Dataset Title: | [Ulva: Chl a] - Chlorophyll a per unit biomass in Ulva lactuca under ocean acidification (OA) conditions (Seaweed OA Resilience project) (Ocean Acidification: Scope for Resilience to Ocean Acidification in Macroalgae) 
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| Institution: | BCO-DMO (Dataset ID: bcodmo_dataset_732438) |
| Information: | Summary
| License
| ISO 19115
| Metadata
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Attributes {
s {
Label {
String bcodmo_name "sample";
String description "Trial number-pot number.frozen tissue replicate";
String long_name "Label";
String nerc_identifier "https://vocab.nerc.ac.uk/collection/P02/current/ACYC/";
String units "unitless";
}
pCO2_avg {
Int16 _FillValue 32767;
Int16 actual_range 248, 1001;
String bcodmo_name "pCO2";
String description "Average pCO2 partial pressure in seawater tanks";
String long_name "P CO2 Avg";
String nerc_identifier "https://vocab.nerc.ac.uk/collection/P01/current/PCO2C101/";
String units "microatmospheres (µatm)";
}
pCO2_sd {
Float32 _FillValue NaN;
Float32 actual_range 36.22, 1827.8;
String bcodmo_name "pCO2";
Float64 colorBarMaximum 50.0;
Float64 colorBarMinimum 0.0;
String description "Variability of pCO2 partial pressure - standard deviation";
String long_name "P CO2 Sd";
String nerc_identifier "https://vocab.nerc.ac.uk/collection/P01/current/PCO2C101/";
String units "microatmospheres (µatm)";
}
Fresh_Wt {
Float32 _FillValue NaN;
Float32 actual_range 0.0199, 0.172;
String bcodmo_name "weight";
String description "Fresh weight of tissue sample prior to deep freeze";
String long_name "Fresh Wt";
String units "grams";
}
DMSO_A665 {
Float32 _FillValue NaN;
Float32 actual_range 0.025, 1.216;
String bcodmo_name "absorbance";
String description "Absorbance of light by ground Ulva tissue at 665nm in 1.25 ml of an 80% DMSO solution in water";
String long_name "DMSO A665";
String units "unitless";
}
Methanol_A668 {
Float32 _FillValue NaN;
Float32 actual_range 0.04, 1.182;
String bcodmo_name "absorbance";
String description "Absorbance of light by ground Ulva tissue at 668nm in 6 ml methanol";
String long_name "Methanol A668";
String units "unitless";
}
Methanol_A635 {
Float32 _FillValue NaN;
Float32 actual_range 0.003, 0.54;
String bcodmo_name "absorbance";
String description "Absorbance of light by ground Ulva tissue at 635nm in 6 ml methanol";
String long_name "Methanol A635";
String units "unitless";
}
DMSO_ext {
Float32 _FillValue NaN;
Float32 actual_range 0.343, 16.703;
String bcodmo_name "chlorophyll a";
String description "Chlorophyll a extracted in DMSO";
String long_name "DMSO Ext";
String nerc_identifier "https://vocab.nerc.ac.uk/collection/P01/current/CPHLHPP1/";
String units "milligram/liter (mg/L)";
}
Meth_ext {
Float32 _FillValue NaN;
Float32 actual_range 0.548, 15.78;
String bcodmo_name "chlorophyll a";
String description "Chlorophyll a in pooled extracts of 12 ml of methanol";
String long_name "Meth Ext";
String nerc_identifier "https://vocab.nerc.ac.uk/collection/P01/current/CPHLHPP1/";
String units "milligram/liter (mg/L)";
}
Total_chl_mg {
Float32 _FillValue NaN;
Float32 actual_range 0.004, 0.102;
String bcodmo_name "chl_tot";
String description "Total chlorophyll a extracted from ground tissue";
String long_name "Total Chl Mg";
String units "milligrams (mg)";
}
chl_a {
Float32 _FillValue NaN;
Float32 actual_range 0.134, 2.111;
String bcodmo_name "chlorophyll a";
Float64 colorBarMaximum 30.0;
Float64 colorBarMinimum 0.03;
String colorBarScale "Log";
String description "Chlorophyll a concentration per unit biomass";
String long_name "Concentration Of Chlorophyll In Sea Water";
String nerc_identifier "https://vocab.nerc.ac.uk/collection/P01/current/CPHLHPP1/";
String units "milligrams/gram (mg/g)";
}
}
NC_GLOBAL {
String access_formats ".htmlTable,.csv,.json,.mat,.nc,.tsv";
String acquisition_description
"Culture pots were placed in large thermally insulated coolers in a
temperature-controlled water bath at 15\\u00b0 C under saturating illumination
of ~550 \\u00b5moles photons/m^2/s on a 12:12 L:D cycle. pCO2 treatments were
supplied to closed culture pots by use of a gas mixing system combining
nitrogen, oxygen and carbon dioxide to specific CO2 partial pressures, 20.9%
oxygen and the balance being nitrogen.
Chlorophyll a was extracted from Ulva tissue following the procedure described
in Duncan and Harrison (1982). Chlorophyll a concentrations were measured
using a Shimadzu UV-2450 UV-visible spectrophotometer.";
String awards_0_award_nid "55177";
String awards_0_award_number "OCE-1316198";
String awards_0_data_url "http://www.nsf.gov/awardsearch/showAward?AWD_ID=1316198";
String awards_0_funder_name "NSF Division of Ocean Sciences";
String awards_0_funding_acronym "NSF OCE";
String awards_0_funding_source_nid "355";
String awards_0_program_manager "David L. Garrison";
String awards_0_program_manager_nid "50534";
String cdm_data_type "Other";
String comment
"Chl_a - Ulva
Chlorophyll a per unit biomass in Ulva lactuca under ocean acidification conditions
PI's: J. Kubler, S. Dudgeon (CSU-Northbridge)
version: 2018-03-22";
String Conventions "COARDS, CF-1.6, ACDD-1.3";
String creator_email "info@bco-dmo.org";
String creator_name "BCO-DMO";
String creator_type "institution";
String creator_url "https://www.bco-dmo.org/";
String data_source "extract_data_as_tsv version 2.3 19 Dec 2019";
String date_created "2018-03-28T12:21:30Z";
String date_modified "2019-06-03T18:19:55Z";
String defaultDataQuery "&time<now";
String doi "10.1575/1912/bco-dmo.732438.1";
String history
"2024-12-30T17:46:09Z (local files)
2024-12-30T17:46:09Z https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_732438.html";
String infoUrl "https://www.bco-dmo.org/dataset/732438";
String institution "BCO-DMO";
String instruments_0_acronym "UV Spectrophotometer-Shimadzu";
String instruments_0_dataset_instrument_description "Used to measure chlorophyll a concentration.";
String instruments_0_dataset_instrument_nid "732449";
String instruments_0_description "The Shimadzu UV Spectrophotometer is manufactured by Shimadzu Scientific Instruments (ssi.shimadzu.com). Shimadzu manufacturers several models of spectrophotometer; refer to dataset for make/model information.";
String instruments_0_instrument_external_identifier "https://vocab.nerc.ac.uk/collection/L05/current/LAB20/";
String instruments_0_instrument_name "UV Spectrophotometer-Shimadzu";
String instruments_0_instrument_nid "595";
String instruments_0_supplied_name "Shimadzu UV-2450 UV-visible spectrophotometer";
String keywords "a635, a665, a668, average, bco, bco-dmo, biological, carbon, carbon dioxide, chemical, chemistry, chl, chl_a, chlorophyll, co2, concentration, concentration_of_chlorophyll_in_sea_water, data, dataset, dioxide, dmo, dmso, DMSO_A665, DMSO_ext, earth, Earth Science > Oceans > Ocean Chemistry > Chlorophyll, erddap, ext, fresh, Fresh_Wt, label, management, meth, Meth_ext, methanol, Methanol_A635, Methanol_A668, ocean, oceanography, oceans, office, pCO2_avg, pCO2_sd, preliminary, science, sea, seawater, total, Total_chl_mg, water";
String keywords_vocabulary "GCMD Science Keywords";
String license "https://www.bco-dmo.org/dataset/732438/license";
String metadata_source "https://www.bco-dmo.org/api/dataset/732438";
String param_mapping "{'732438': {}}";
String parameter_source "https://www.bco-dmo.org/mapserver/dataset/732438/parameters";
String people_0_affiliation "California State University Northridge";
String people_0_affiliation_acronym "CSU-Northridge";
String people_0_person_name "Dr Janet E Kubler";
String people_0_person_nid "51681";
String people_0_role "Principal Investigator";
String people_0_role_type "originator";
String people_1_affiliation "California State University Northridge";
String people_1_affiliation_acronym "CSU-Northridge";
String people_1_person_name "Dr Steve Dudgeon";
String people_1_person_nid "51682";
String people_1_role "Co-Principal Investigator";
String people_1_role_type "originator";
String people_2_affiliation "Woods Hole Oceanographic Institution";
String people_2_affiliation_acronym "WHOI BCO-DMO";
String people_2_person_name "Nancy Copley";
String people_2_person_nid "50396";
String people_2_role "BCO-DMO Data Manager";
String people_2_role_type "related";
String project "Seaweed OA Resilience";
String projects_0_acronym "Seaweed OA Resilience";
String projects_0_description "Benthic macroalgae contribute to intensely productive near shore ecosystems and little is known about the potential effects of ocean acidification on non-calcifying macroalgae. Kübler and Dudgeon will test hypotheses about two macroalgae, Ulva spp. and Plocamium cartilagineum, which, for different reasons, are hypothesized to be more productive and undergo ecological expansions under predicted changes in ocean chemistry. They have designed laboratory culture-based experiments to quantify the scope for response to ocean acidification in Plocamium, which relies solely on diffusive uptake of CO2, and populations of Ulva spp., which have an inducible concentrating mechanism (CCM). The investigators will culture these algae in media equilibrated at 8 different pCO2 levels ranging from 380 to 940 ppm to address three key hypotheses. The first is that macroalgae (such as Plocamium cartilagineum) that are not able to acquire inorganic carbon in changed form will benefit, in terms of photosynthetic and growth rates, from ocean acidification. There is little existing data to support this common assumption. The second hypothesis is that enhanced growth of Ulva sp. under OA will result from the energetic savings from down regulating the CCM, rather than from enhanced photosynthesis per se. Their approach will detect existing genetic variation for adaptive plasticity. The third key hypothesis to be addressed in short-term culture experiments is that there will be a significant interaction between ocean acidification and nitrogen limited growth of Ulva spp., which are indicator species of eutrophication. Kübler and Dudgeon will be able to quantify the individual effects of ocean acidification and nitrogenous nutrient addition on Ulva spp. and also, the synergistic effects, which will inevitably apply in many highly productive, shallow coastal areas. The three hypotheses being addressed have been broadly identified as urgent needs in our growing understanding of the impacts of ocean acidification.";
String projects_0_end_date "2016-05";
String projects_0_geolocation "Temperate coastal waters of the USA (30 - 45 N latitude, -66 to -88 W and -117 to -125 W longitude)";
String projects_0_name "Ocean Acidification: Scope for Resilience to Ocean Acidification in Macroalgae";
String projects_0_project_nid "2275";
String projects_0_start_date "2013-06";
String publisher_name "Biological and Chemical Oceanographic Data Management Office (BCO-DMO)";
String publisher_type "institution";
String sourceUrl "(local files)";
String standard_name_vocabulary "CF Standard Name Table v55";
String summary "This dataset reports the chlorophyll a concentration per unit biomass of Ulva lactuca grown in closed culture pots at varying pCO2 levels.";
String title "[Ulva: Chl a] - Chlorophyll a per unit biomass in Ulva lactuca under ocean acidification (OA) conditions (Seaweed OA Resilience project) (Ocean Acidification: Scope for Resilience to Ocean Acidification in Macroalgae)";
String version "1";
String xml_source "osprey2erddap.update_xml() v1.3";
}
}
Data Access Protocol (DAP) and its
selection constraints.
The URL specifies what you want: the dataset, a description of the graph or the subset of the data, and the file type for the response.
Tabledap request URLs must be in the form
https://coastwatch.pfeg.noaa.gov/erddap/tabledap/datasetID.fileType{?query}
For example,
https://coastwatch.pfeg.noaa.gov/erddap/tabledap/pmelTaoDySst.htmlTable?longitude,latitude,time,station,wmo_platform_code,T_25&time>=2015-05-23T12:00:00Z&time<=2015-05-31T12:00:00Z
Thus, the query is often a comma-separated list of desired variable names,
followed by a collection of
constraints (e.g., variable<value),
each preceded by '&' (which is interpreted as "AND").
For details, see the tabledap Documentation.