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bioproject_accession | sample_name | SRA_run_ID | SRA_run_link | library_ID | SRA_study_ID | SRA_title | library_strategy | library_source | library_selection | library_layout | platform | instrument_model | design_description | filetype | filename | filetpe2 | filename2 | depth2 | latitude | longitude |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
unitless | unitless | unitless | unitless | unitless | unitless | unitless | unitless | unitless | unitless | unitless | unitless | unitless | unitless | unitless | unitless | unitless | unitless | various | degrees_north | degrees_east |
PRJNA311248 | 2013-04-24_Catalina | SRR3180319 | <a href='https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR3180319'>https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR3180319</a> | 2013-04-24_April_Catalina_cDNA | SRP070577 | V4 tag sequencing of microbial eukaryotic community | AMPLICON | TRANSCRIPTOMIC | PCR | paired | ILLUMINA | Illumina MiSeq | Total DNA and RNA extracted from the same environmental sample. RNA was reverse transcribed to cDNA. cDNA product was PCR amplified using V4 primers. | fastq | 2013-04-24_April_Catalina_cDNA_R1.fastq | fastq | 2013-04-24_April_Catalina_cDNA_R2.fastq | Surface | 33.45 | -118.48 |
PRJNA311248 | 2013-04-24_Catalina | SRR3180320 | <a href='https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR3180320'>https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR3180320</a> | 2013-04-24_April_Catalina_DNA | SRP070577 | V4 tag sequencing of microbial eukaryotic community | AMPLICON | GENOMIC | PCR | paired | ILLUMINA | Illumina MiSeq | Total DNA and RNA extracted from the same environmental sample. DNA was PCR amplified using V4 primers. | fastq | 2013-04-24_April_Catalina_DNA_R1.fastq | fastq | 2013-04-24_April_Catalina_DNA_R2.fastq | Surface | 33.45 | -118.48 |
PRJNA311248 | 2013-04-24_PortofLA | SRR3180331 | <a href='https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR3180331'>https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR3180331</a> | 2013-04-24_April_PortofLA_cDNA | SRP070577 | V4 tag sequencing of microbial eukaryotic community | AMPLICON | TRANSCRIPTOMIC | PCR | paired | ILLUMINA | Illumina MiSeq | Total DNA and RNA extracted from the same environmental sample. RNA was reverse transcribed to cDNA. cDNA product was PCR amplified using V4 primers. | fastq | 2013-04-24_April_PortofLA_cDNA_R1.fastq | fastq | 2013-04-24_April_PortofLA_cDNA_R2.fastq | Surface | 33.72 | -118.26 |
PRJNA311248 | 2013-04-24_PortofLA | SRR3180342 | <a href='https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR3180342'>https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR3180342</a> | 2013-04-24_April_PortofLA_DNA | SRP070577 | V4 tag sequencing of microbial eukaryotic community | AMPLICON | GENOMIC | PCR | paired | ILLUMINA | Illumina MiSeq | Total DNA and RNA extracted from the same environmental sample. DNA was PCR amplified using V4 primers. | fastq | 2013-04-24_April_PortofLA_DNA_R1.fastq | fastq | 2013-04-24_April_PortofLA_DNA_R2.fastq | Surface | 33.72 | -118.26 |
PRJNA311248 | 2013-04-24_SPOT150m | SRR3180353 | <a href='https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR3180353'>https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR3180353</a> | 2013-04-24_April_SPOT150m_cDNA | SRP070577 | V4 tag sequencing of microbial eukaryotic community | AMPLICON | TRANSCRIPTOMIC | PCR | paired | ILLUMINA | Illumina MiSeq | Total DNA and RNA extracted from the same environmental sample. RNA was reverse transcribed to cDNA. cDNA product was PCR amplified using V4 primers. | fastq | 2013-04-24_April_SPOT150m_cDNA_R1.fastq | fastq | 2013-04-24_April_SPOT150m_cDNA_R2.fastq | 150m | 33.55 | -118.4 |
PRJNA311248 | 2013-04-24_SPOT150m | SRR3180364 | <a href='https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR3180364'>https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR3180364</a> | 2013-04-24_April_SPOT150m_DNA | SRP070577 | V4 tag sequencing of microbial eukaryotic community | AMPLICON | GENOMIC | PCR | paired | ILLUMINA | Illumina MiSeq | Total DNA and RNA extracted from the same environmental sample. DNA was PCR amplified using V4 primers. | fastq | 2013-04-24_April_SPOT150m_DNA_R1.fastq | fastq | 2013-04-24_April_SPOT150m_DNA_R2.fastq | 150m | 33.55 | -118.4 |
PRJNA311248 | 2013-04-24_SPOT890m | SRR3180365 | <a href='https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR3180365'>https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR3180365</a> | 2013-04-24_April_SPOT890m_cDNA | SRP070577 | V4 tag sequencing of microbial eukaryotic community | AMPLICON | TRANSCRIPTOMIC | PCR | paired | ILLUMINA | Illumina MiSeq | Total DNA and RNA extracted from the same environmental sample. RNA was reverse transcribed to cDNA. cDNA product was PCR amplified using V4 primers. | fastq | 2013-04-24_April_SPOT890m_cDNA_R1.fastq | fastq | 2013-04-24_April_SPOT890m_cDNA_R2.fastq | 890m | 33.55 | -118.4 |
PRJNA311248 | 2013-04-24_SPOT890m | SRR3180366 | <a href='https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR3180366'>https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR3180366</a> | 2013-04-24_April_SPOT890m_DNA | SRP070577 | V4 tag sequencing of microbial eukaryotic community | AMPLICON | GENOMIC | PCR | paired | ILLUMINA | Illumina MiSeq | Total DNA and RNA extracted from the same environmental sample. DNA was PCR amplified using V4 primers. | fastq | 2013-04-24_April_SPOT890m_DNA_R1.fastq | fastq | 2013-04-24_April_SPOT890m_DNA_R2.fastq | 890m | 33.55 | -118.4 |
PRJNA311248 | 2013-04-24_SPOTSCM | SRR3180367 | <a href='https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR3180367'>https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR3180367</a> | 2013-04-24_April_SPOTSCM_cDNA | SRP070577 | V4 tag sequencing of microbial eukaryotic community | AMPLICON | TRANSCRIPTOMIC | PCR | paired | ILLUMINA | Illumina MiSeq | Total DNA and RNA extracted from the same environmental sample. RNA was reverse transcribed to cDNA. cDNA product was PCR amplified using V4 primers. | fastq | 2013-04-24_April_SPOTSCM_cDNA_R1.fastq | fastq | 2013-04-24_April_SPOTSCM_cDNA_R2.fastq | 32m | 33.55 | -118.4 |
PRJNA311248 | 2013-04-24_SPOTSCM | SRR3180368 | <a href='https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR3180368'>https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR3180368</a> | 2013-04-24_April_SPOTSCM_DNA | SRP070577 | V4 tag sequencing of microbial eukaryotic community | AMPLICON | GENOMIC | PCR | paired | ILLUMINA | Illumina MiSeq | Total DNA and RNA extracted from the same environmental sample. DNA was PCR amplified using V4 primers. | fastq | 2013-04-24_April_SPOTSCM_DNA_R1.fastq | fastq | 2013-04-24_April_SPOTSCM_DNA_R2.fastq | 32m | 33.55 | -118.4 |
PRJNA311248 | 2013-04-24_SPOTsurface(5m) | SRR3180321 | <a href='https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR3180321'>https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR3180321</a> | 2013-04-24_April_SPOTsurface5m_cDNA | SRP070577 | V4 tag sequencing of microbial eukaryotic community | AMPLICON | TRANSCRIPTOMIC | PCR | paired | ILLUMINA | Illumina MiSeq | Total DNA and RNA extracted from the same environmental sample. RNA was reverse transcribed to cDNA. cDNA product was PCR amplified using V4 primers. | fastq | 2013-04-24_April_SPOTsurface5m_cDNA_R1.fastq | fastq | 2013-04-24_April_SPOTsurface5m_cDNA_R2.fastq | 5m | 33.55 | -118.4 |
PRJNA311248 | 2013-04-24_SPOTsurface(5m) | SRR3180322 | <a href='https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR3180322'>https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR3180322</a> | 2013-04-24_April_SPOTsurface5m_DNA | SRP070577 | V4 tag sequencing of microbial eukaryotic community | AMPLICON | GENOMIC | PCR | paired | ILLUMINA | Illumina MiSeq | Total DNA and RNA extracted from the same environmental sample. DNA was PCR amplified using V4 primers. | fastq | 2013-04-24_April_SPOTsurface5m_DNA_R1.fastq | fastq | 2013-04-24_April_SPOTsurface5m_DNA_R2.fastq | 5m | 33.55 | -118.4 |
PRJNA311248 | 2013-07-15_Catalina | SRR3180323 | <a href='https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR3180323'>https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR3180323</a> | 2013-07-15_July_Catalina_cDNA | SRP070577 | V4 tag sequencing of microbial eukaryotic community | AMPLICON | TRANSCRIPTOMIC | PCR | paired | ILLUMINA | Illumina MiSeq | Total DNA and RNA extracted from the same environmental sample. RNA was reverse transcribed to cDNA. cDNA product was PCR amplified using V4 primers. | fastq | 2013-07-15_July_Catalina_cDNA_R1.fastq | fastq | 2013-07-15_July_Catalina_cDNA_R2.fastq | Surface | 33.45 | -118.48 |
PRJNA311248 | 2013-07-15_Catalina | SRR3180324 | <a href='https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR3180324'>https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR3180324</a> | 2013-07-15_July_Catalina_DNA | SRP070577 | V4 tag sequencing of microbial eukaryotic community | AMPLICON | GENOMIC | PCR | paired | ILLUMINA | Illumina MiSeq | Total DNA and RNA extracted from the same environmental sample. DNA was PCR amplified using V4 primers. | fastq | 2013-07-15_July_Catalina_DNA_R1.fastq | fastq | 2013-07-15_July_Catalina_DNA_R2.fastq | Surface | 33.45 | -118.48 |
PRJNA311248 | 2013-07-15_PortofLA | SRR3180325 | <a href='https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR3180325'>https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR3180325</a> | 2013-07-15_July_PortofLA_cDNA | SRP070577 | V4 tag sequencing of microbial eukaryotic community | AMPLICON | TRANSCRIPTOMIC | PCR | paired | ILLUMINA | Illumina MiSeq | Total DNA and RNA extracted from the same environmental sample. RNA was reverse transcribed to cDNA. cDNA product was PCR amplified using V4 primers. | fastq | 2013-07-15_July_PortofLA_cDNA_R1.fastq | fastq | 2013-07-15_July_PortofLA_cDNA_R2.fastq | Surface | 33.72 | -118.26 |
PRJNA311248 | 2013-07-15_PortofLA | SRR3180326 | <a href='https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR3180326'>https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR3180326</a> | 2013-07-15_July_PortofLA_DNA | SRP070577 | V4 tag sequencing of microbial eukaryotic community | AMPLICON | GENOMIC | PCR | paired | ILLUMINA | Illumina MiSeq | Total DNA and RNA extracted from the same environmental sample. DNA was PCR amplified using V4 primers. | fastq | 2013-07-15_July_PortofLA_DNA_R1.fastq | fastq | 2013-07-15_July_PortofLA_DNA_R2.fastq | Surface | 33.72 | -118.26 |
PRJNA311248 | 2013-07-18_SPOT150m | SRR3180327 | <a href='https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR3180327'>https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR3180327</a> | 2013-07-18_July_SPOT150m_cDNA | SRP070577 | V4 tag sequencing of microbial eukaryotic community | AMPLICON | TRANSCRIPTOMIC | PCR | paired | ILLUMINA | Illumina MiSeq | Total DNA and RNA extracted from the same environmental sample. RNA was reverse transcribed to cDNA. cDNA product was PCR amplified using V4 primers. | fastq | 2013-07-18_July_SPOT150m_cDNA_R1.fastq | fastq | 2013-07-18_July_SPOT150m_cDNA_R2.fastq | 150m | 33.55 | -118.4 |
PRJNA311248 | 2013-07-18_SPOT150m | SRR3180328 | <a href='https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR3180328'>https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR3180328</a> | 2013-07-18_July_SPOT150m_DNA | SRP070577 | V4 tag sequencing of microbial eukaryotic community | AMPLICON | GENOMIC | PCR | paired | ILLUMINA | Illumina MiSeq | Total DNA and RNA extracted from the same environmental sample. DNA was PCR amplified using V4 primers. | fastq | 2013-07-18_July_SPOT150m_DNA_R1.fastq | fastq | 2013-07-18_July_SPOT150m_DNA_R2.fastq | 150m | 33.55 | -118.4 |
PRJNA311248 | 2013-07-18_SPOT890m | SRR3180329 | <a href='https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR3180329'>https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR3180329</a> | 2013-07-18_July_SPOT890m_cDNA | SRP070577 | V4 tag sequencing of microbial eukaryotic community | AMPLICON | TRANSCRIPTOMIC | PCR | paired | ILLUMINA | Illumina MiSeq | Total DNA and RNA extracted from the same environmental sample. RNA was reverse transcribed to cDNA. cDNA product was PCR amplified using V4 primers. | fastq | 2013-07-18_July_SPOT890m_cDNA_R1.fastq | fastq | 2013-07-18_July_SPOT890m_cDNA_R2.fastq | 890m | 33.55 | -118.4 |
PRJNA311248 | 2013-07-18_SPOT890m | SRR3180330 | <a href='https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR3180330'>https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR3180330</a> | 2013-07-18_July_SPOT890m_DNA | SRP070577 | V4 tag sequencing of microbial eukaryotic community | AMPLICON | GENOMIC | PCR | paired | ILLUMINA | Illumina MiSeq | Total DNA and RNA extracted from the same environmental sample. DNA was PCR amplified using V4 primers. | fastq | 2013-07-18_July_SPOT890m_DNA_R1.fastq | fastq | 2013-07-18_July_SPOT890m_DNA_R2.fastq | 890m | 33.55 | -118.4 |
PRJNA311248 | 2013-07-18_SPOTSCM | SRR3180332 | <a href='https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR3180332'>https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR3180332</a> | 2013-07-18_July_SPOTSCM_cDNA | SRP070577 | V4 tag sequencing of microbial eukaryotic community | AMPLICON | TRANSCRIPTOMIC | PCR | paired | ILLUMINA | Illumina MiSeq | Total DNA and RNA extracted from the same environmental sample. RNA was reverse transcribed to cDNA. cDNA product was PCR amplified using V4 primers. | fastq | 2013-07-18_July_SPOTSCM_cDNA_R1.fastq | fastq | 2013-07-18_July_SPOTSCM_cDNA_R2.fastq | 33m | 33.55 | -118.4 |
PRJNA311248 | 2013-07-18_SPOTSCM | SRR3180333 | <a href='https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR3180333'>https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR3180333</a> | 2013-07-18_July_SPOTSCM_DNA | SRP070577 | V4 tag sequencing of microbial eukaryotic community | AMPLICON | GENOMIC | PCR | paired | ILLUMINA | Illumina MiSeq | Total DNA and RNA extracted from the same environmental sample. DNA was PCR amplified using V4 primers. | fastq | 2013-07-18_July_SPOTSCM_DNA_R1.fastq | fastq | 2013-07-18_July_SPOTSCM_DNA_R2.fastq | 33m | 33.55 | -118.4 |
PRJNA311248 | 2013-07-18_SPOTsurface(5m) | SRR3180334 | <a href='https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR3180334'>https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR3180334</a> | 2013-07-18_July_SPOTsurface5m_cDNA_rep1 | SRP070577 | V4 tag sequencing of microbial eukaryotic community | AMPLICON | TRANSCRIPTOMIC | PCR | paired | ILLUMINA | Illumina MiSeq | Total DNA and RNA extracted from the same environmental sample. RNA was reverse transcribed to cDNA. cDNA product was PCR amplified using V4 primers. | fastq | 2013-07-18_July_SPOTsurface5m_cDNA_rep1_R1.fastq | fastq | 2013-07-18_July_SPOTsurface5m_cDNA_rep1_R2.fastq | 5m | 33.55 | -118.4 |
PRJNA311248 | 2013-07-18_SPOTsurface(5m) | SRR3180335 | <a href='https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR3180335'>https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR3180335</a> | 2013-07-18_July_SPOTsurface5m_cDNA_rep2 | SRP070577 | V4 tag sequencing of microbial eukaryotic community | AMPLICON | TRANSCRIPTOMIC | PCR | paired | ILLUMINA | Illumina MiSeq | Total DNA and RNA extracted from the same environmental sample. RNA was reverse transcribed to cDNA. cDNA product was PCR amplified using V4 primers. | fastq | 2013-07-18_July_SPOTsurface5m_cDNA_rep2_R1.fastq | fastq | 2013-07-18_July_SPOTsurface5m_cDNA_rep2_R2.fastq | 5m | 33.55 | -118.4 |
PRJNA311248 | 2013-07-18_SPOTsurface(5m) | SRR3180336 | <a href='https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR3180336'>https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR3180336</a> | 2013-07-18_July_SPOTsurface5m_DNA_rep1 | SRP070577 | V4 tag sequencing of microbial eukaryotic community | AMPLICON | GENOMIC | PCR | paired | ILLUMINA | Illumina MiSeq | Total DNA and RNA extracted from the same environmental sample. DNA was PCR amplified using V4 primers. | fastq | 2013-07-18_July_SPOTsurface5m_DNA_rep1_R1.fastq | fastq | 2013-07-18_July_SPOTsurface5m_DNA_rep1_R2.fastq | 5m | 33.55 | -118.4 |
PRJNA311248 | 2013-07-18_SPOTsurface(5m) | SRR3180337 | <a href='https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR3180337'>https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR3180337</a> | 2013-07-18_July_SPOTsurface5m_DNA_rep2 | SRP070577 | V4 tag sequencing of microbial eukaryotic community | AMPLICON | GENOMIC | PCR | paired | ILLUMINA | Illumina MiSeq | Total DNA and RNA extracted from the same environmental sample. DNA was PCR amplified using V4 primers. | fastq | 2013-07-18_July_SPOTsurface5m_DNA_rep2_R1.fastq | fastq | 2013-07-18_July_SPOTsurface5m_DNA_rep2_R2.fastq | 5m | 33.55 | -118.4 |
PRJNA311248 | 2013-10-15_SPOT150m | SRR3180338 | <a href='https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR3180338'>https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR3180338</a> | 2013-10-15_October_SPOT150m_cDNA | SRP070577 | V4 tag sequencing of microbial eukaryotic community | AMPLICON | TRANSCRIPTOMIC | PCR | paired | ILLUMINA | Illumina MiSeq | Total DNA and RNA extracted from the same environmental sample. RNA was reverse transcribed to cDNA. cDNA product was PCR amplified using V4 primers. | fastq | 2013-10-15_October_SPOT150m_cDNA_R1.fastq | fastq | 2013-10-15_October_SPOT150m_cDNA_R2.fastq | 150m | 33.55 | -118.4 |
PRJNA311248 | 2013-10-15_SPOT150m | SRR3180339 | <a href='https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR3180339'>https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR3180339</a> | 2013-10-15_October_SPOT150m_DNA | SRP070577 | V4 tag sequencing of microbial eukaryotic community | AMPLICON | GENOMIC | PCR | paired | ILLUMINA | Illumina MiSeq | Total DNA and RNA extracted from the same environmental sample. DNA was PCR amplified using V4 primers. | fastq | 2013-10-15_October_SPOT150m_DNA_R1.fastq | fastq | 2013-10-15_October_SPOT150m_DNA_R2.fastq | 150m | 33.55 | -118.4 |
PRJNA311248 | 2013-10-15_SPOT890m | SRR3180340 | <a href='https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR3180340'>https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR3180340</a> | 2013-10-15_October_SPOT890m_cDNA | SRP070577 | V4 tag sequencing of microbial eukaryotic community | AMPLICON | TRANSCRIPTOMIC | PCR | paired | ILLUMINA | Illumina MiSeq | Total DNA and RNA extracted from the same environmental sample. RNA was reverse transcribed to cDNA. cDNA product was PCR amplified using V4 primers. | fastq | 2013-10-15_October_SPOT890m_cDNA_R1.fastq | fastq | 2013-10-15_October_SPOT890m_cDNA_R2.fastq | 890m | 33.55 | -118.4 |
PRJNA311248 | 2013-10-15_SPOT890m | SRR3180341 | <a href='https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR3180341'>https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR3180341</a> | 2013-10-15_October_SPOT890m_DNA | SRP070577 | V4 tag sequencing of microbial eukaryotic community | AMPLICON | GENOMIC | PCR | paired | ILLUMINA | Illumina MiSeq | Total DNA and RNA extracted from the same environmental sample. DNA was PCR amplified using V4 primers. | fastq | 2013-10-15_October_SPOT890m_DNA_R1.fastq | fastq | 2013-10-15_October_SPOT890m_DNA_R2.fastq | 890m | 33.55 | -118.4 |
PRJNA311248 | 2013-10-15_SPOTSCM | SRR3180343 | <a href='https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR3180343'>https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR3180343</a> | 2013-10-15_October_SPOTSCM_cDNA | SRP070577 | V4 tag sequencing of microbial eukaryotic community | AMPLICON | TRANSCRIPTOMIC | PCR | paired | ILLUMINA | Illumina MiSeq | Total DNA and RNA extracted from the same environmental sample. RNA was reverse transcribed to cDNA. cDNA product was PCR amplified using V4 primers. | fastq | 2013-10-15_October_SPOTSCM_cDNA_R1.fastq | fastq | 2013-10-15_October_SPOTSCM_cDNA_R2.fastq | 34m | 33.55 | -118.4 |
PRJNA311248 | 2013-10-15_SPOTSCM | SRR3180344 | <a href='https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR3180344'>https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR3180344</a> | 2013-10-15_October_SPOTSCM_DNA | SRP070577 | V4 tag sequencing of microbial eukaryotic community | AMPLICON | GENOMIC | PCR | paired | ILLUMINA | Illumina MiSeq | Total DNA and RNA extracted from the same environmental sample. DNA was PCR amplified using V4 primers. | fastq | 2013-10-15_October_SPOTSCM_DNA_R1.fastq | fastq | 2013-10-15_October_SPOTSCM_DNA_R2.fastq | 34m | 33.55 | -118.4 |
PRJNA311248 | 2013-10-15_SPOTsurface(5m) | SRR3180345 | <a href='https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR3180345'>https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR3180345</a> | 2013-10-15_October_SPOTsurface5m_cDNA | SRP070577 | V4 tag sequencing of microbial eukaryotic community | AMPLICON | TRANSCRIPTOMIC | PCR | paired | ILLUMINA | Illumina MiSeq | Total DNA and RNA extracted from the same environmental sample. RNA was reverse transcribed to cDNA. cDNA product was PCR amplified using V4 primers. | fastq | 2013-10-15_October_SPOTsurface5m_cDNA_R1.fastq | fastq | 2013-10-15_October_SPOTsurface5m_cDNA_R2.fastq | 5m | 33.55 | -118.4 |
PRJNA311248 | 2013-10-15_SPOTsurface(5m) | SRR3180346 | <a href='https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR3180346'>https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR3180346</a> | 2013-10-15_October_SPOTsurface5m_DNA | SRP070577 | V4 tag sequencing of microbial eukaryotic community | AMPLICON | GENOMIC | PCR | paired | ILLUMINA | Illumina MiSeq | Total DNA and RNA extracted from the same environmental sample. DNA was PCR amplified using V4 primers. | fastq | 2013-10-15_October_SPOTsurface5m_DNA_R1.fastq | fastq | 2013-10-15_October_SPOTsurface5m_DNA_R2.fastq | 5m | 33.55 | -118.4 |
PRJNA311248 | 2013-10-16_Catalina | SRR3180347 | <a href='https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR3180347'>https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR3180347</a> | 2013-10-16_October_Catalina_cDNA | SRP070577 | V4 tag sequencing of microbial eukaryotic community | AMPLICON | TRANSCRIPTOMIC | PCR | paired | ILLUMINA | Illumina MiSeq | Total DNA and RNA extracted from the same environmental sample. RNA was reverse transcribed to cDNA. cDNA product was PCR amplified using V4 primers. | fastq | 2013-10-16_October_Catalina_cDNA_R1.fastq | fastq | 2013-10-16_October_Catalina_cDNA_R2.fastq | Surface | 33.45 | -118.48 |
PRJNA311248 | 2013-10-16_Catalina | SRR3180348 | <a href='https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR3180348'>https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR3180348</a> | 2013-10-16_October_Catalina_DNA | SRP070577 | V4 tag sequencing of microbial eukaryotic community | AMPLICON | GENOMIC | PCR | paired | ILLUMINA | Illumina MiSeq | Total DNA and RNA extracted from the same environmental sample. DNA was PCR amplified using V4 primers. | fastq | 2013-10-16_October_Catalina_DNA_R1.fastq | fastq | 2013-10-16_October_Catalina_DNA_R2.fastq | Surface | 33.45 | -118.48 |
PRJNA311248 | 2013-10-16_PortofLA | SRR3180349 | <a href='https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR3180349'>https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR3180349</a> | 2013-10-16_October_PortofLA_cDNA | SRP070577 | V4 tag sequencing of microbial eukaryotic community | AMPLICON | TRANSCRIPTOMIC | PCR | paired | ILLUMINA | Illumina MiSeq | Total DNA and RNA extracted from the same environmental sample. RNA was reverse transcribed to cDNA. cDNA product was PCR amplified using V4 primers. | fastq | 2013-10-16_October_PortofLA_cDNA_R1.fastq | fastq | 2013-10-16_October_PortofLA_cDNA_R2.fastq | Surface | 33.72 | -118.26 |
PRJNA311248 | 2013-10-16_PortofLA | SRR3180350 | <a href='https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR3180350'>https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR3180350</a> | 2013-10-16_October_PortofLA_DNA | SRP070577 | V4 tag sequencing of microbial eukaryotic community | AMPLICON | GENOMIC | PCR | paired | ILLUMINA | Illumina MiSeq | Total DNA and RNA extracted from the same environmental sample. DNA was PCR amplified using V4 primers. | fastq | 2013-10-16_October_PortofLA_DNA_R1.fastq | fastq | 2013-10-16_October_PortofLA_DNA_R2.fastq | Surface | 33.72 | -118.26 |
PRJNA311248 | 2014-01-07_Catalina | SRR3180351 | <a href='https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR3180351'>https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR3180351</a> | 2014-01-07_January_Catalina_cDNA | SRP070577 | V4 tag sequencing of microbial eukaryotic community | AMPLICON | TRANSCRIPTOMIC | PCR | paired | ILLUMINA | Illumina MiSeq | Total DNA and RNA extracted from the same environmental sample. RNA was reverse transcribed to cDNA. cDNA product was PCR amplified using V4 primers. | fastq | 2014-01-07_January_Catalina_cDNA_R1.fastq | fastq | 2014-01-07_January_Catalina_cDNA_R2.fastq | Surface | 33.45 | -118.48 |
PRJNA311248 | 2014-01-07_Catalina | SRR3180352 | <a href='https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR3180352'>https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR3180352</a> | 2014-01-07_January_Catalina_DNA | SRP070577 | V4 tag sequencing of microbial eukaryotic community | AMPLICON | GENOMIC | PCR | paired | ILLUMINA | Illumina MiSeq | Total DNA and RNA extracted from the same environmental sample. DNA was PCR amplified using V4 primers. | fastq | 2014-01-07_January_Catalina_DNA_R1.fastq | fastq | 2014-01-07_January_Catalina_DNA_R2.fastq | Surface | 33.45 | -118.48 |
PRJNA311248 | 2014-01-07_PortofLA | SRR3180354 | <a href='https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR3180354'>https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR3180354</a> | 2014-01-07_January_PortofLA_cDNA | SRP070577 | V4 tag sequencing of microbial eukaryotic community | AMPLICON | TRANSCRIPTOMIC | PCR | paired | ILLUMINA | Illumina MiSeq | Total DNA and RNA extracted from the same environmental sample. RNA was reverse transcribed to cDNA. cDNA product was PCR amplified using V4 primers. | fastq | 2014-01-07_January_PortofLA_cDNA_R1.fastq | fastq | 2014-01-07_January_PortofLA_cDNA_R2.fastq | Surface | 33.72 | -118.26 |
PRJNA311248 | 2014-01-07_PortofLA | SRR3180355 | <a href='https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR3180355'>https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR3180355</a> | 2014-01-07_January_PortofLA_DNA | SRP070577 | V4 tag sequencing of microbial eukaryotic community | AMPLICON | GENOMIC | PCR | paired | ILLUMINA | Illumina MiSeq | Total DNA and RNA extracted from the same environmental sample. DNA was PCR amplified using V4 primers. | fastq | 2014-01-07_January_PortofLA_DNA_R1.fastq | fastq | 2014-01-07_January_PortofLA_DNA_R2.fastq | Surface | 33.72 | -118.26 |
PRJNA311248 | 2014-01-15_SPOT150m | SRR3180356 | <a href='https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR3180356'>https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR3180356</a> | 2014-01-15_January_SPOT150m_cDNA | SRP070577 | V4 tag sequencing of microbial eukaryotic community | AMPLICON | TRANSCRIPTOMIC | PCR | paired | ILLUMINA | Illumina MiSeq | Total DNA and RNA extracted from the same environmental sample. RNA was reverse transcribed to cDNA. cDNA product was PCR amplified using V4 primers. | fastq | 2014-01-15_January_SPOT150m_cDNA_R1.fastq | fastq | 2014-01-15_January_SPOT150m_cDNA_R2.fastq | 150m | 33.55 | -118.4 |
PRJNA311248 | 2014-01-15_SPOT150m | SRR3180357 | <a href='https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR3180357'>https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR3180357</a> | 2014-01-15_January_SPOT150m_DNA | SRP070577 | V4 tag sequencing of microbial eukaryotic community | AMPLICON | GENOMIC | PCR | paired | ILLUMINA | Illumina MiSeq | Total DNA and RNA extracted from the same environmental sample. DNA was PCR amplified using V4 primers. | fastq | 2014-01-15_January_SPOT150m_DNA_R1.fastq | fastq | 2014-01-15_January_SPOT150m_DNA_R2.fastq | 150m | 33.55 | -118.4 |
PRJNA311248 | 2014-01-15_SPOT890m | SRR3180358 | <a href='https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR3180358'>https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR3180358</a> | 2014-01-15_January_SPOT890m_cDNA | SRP070577 | V4 tag sequencing of microbial eukaryotic community | AMPLICON | TRANSCRIPTOMIC | PCR | paired | ILLUMINA | Illumina MiSeq | Total DNA and RNA extracted from the same environmental sample. RNA was reverse transcribed to cDNA. cDNA product was PCR amplified using V4 primers. | fastq | 2014-01-15_January_SPOT890m_cDNA_R1.fastq | fastq | 2014-01-15_January_SPOT890m_cDNA_R2.fastq | 890m | 33.55 | -118.4 |
PRJNA311248 | 2014-01-15_SPOT890m | SRR3180359 | <a href='https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR3180359'>https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR3180359</a> | 2014-01-15_January_SPOT890m_DNA | SRP070577 | V4 tag sequencing of microbial eukaryotic community | AMPLICON | GENOMIC | PCR | paired | ILLUMINA | Illumina MiSeq | Total DNA and RNA extracted from the same environmental sample. DNA was PCR amplified using V4 primers. | fastq | 2014-01-15_January_SPOT890m_DNA_R1.fastq | fastq | 2014-01-15_January_SPOT890m_DNA_R2.fastq | 890m | 33.55 | -118.4 |
PRJNA311248 | 2014-01-15_SPOTSCM | SRR3180360 | <a href='https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR3180360'>https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR3180360</a> | 2014-01-15_January_SPOTSCM_cDNA | SRP070577 | V4 tag sequencing of microbial eukaryotic community | AMPLICON | TRANSCRIPTOMIC | PCR | paired | ILLUMINA | Illumina MiSeq | Total DNA and RNA extracted from the same environmental sample. RNA was reverse transcribed to cDNA. cDNA product was PCR amplified using V4 primers. | fastq | 2014-01-15_January_SPOTSCM_cDNA_R1.fastq | fastq | 2014-01-15_January_SPOTSCM_cDNA_R2.fastq | 42m | 33.55 | -118.4 |
PRJNA311248 | 2014-01-15_SPOTSCM | SRR3180361 | <a href='https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR3180361'>https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR3180361</a> | 2014-01-15_January_SPOTSCM_DNA | SRP070577 | V4 tag sequencing of microbial eukaryotic community | AMPLICON | GENOMIC | PCR | paired | ILLUMINA | Illumina MiSeq | Total DNA and RNA extracted from the same environmental sample. DNA was PCR amplified using V4 primers. | fastq | 2014-01-15_January_SPOTSCM_DNA_R1.fastq | fastq | 2014-01-15_January_SPOTSCM_DNA_R2.fastq | 42m | 33.55 | -118.4 |
PRJNA311248 | 2014-01-15_SPOTsurface(5m) | SRR3180362 | <a href='https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR3180362'>https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR3180362</a> | 2014-01-15_January_SPOTsurface5m_cDNA | SRP070577 | V4 tag sequencing of microbial eukaryotic community | AMPLICON | TRANSCRIPTOMIC | PCR | paired | ILLUMINA | Illumina MiSeq | Total DNA and RNA extracted from the same environmental sample. RNA was reverse transcribed to cDNA. cDNA product was PCR amplified using V4 primers. | fastq | 2014-01-15_January_SPOTsurface5m_cDNA_R1.fastq | fastq | 2014-01-15_January_SPOTsurface5m_cDNA_R2.fastq | 5m | 33.55 | -118.4 |
PRJNA311248 | 2014-01-15_SPOTsurface(5m) | SRR3180363 | <a href='https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR3180363'>https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR3180363</a> | 2014-01-15_January_SPOTsurface5m_DNA | SRP070577 | V4 tag sequencing of microbial eukaryotic community | AMPLICON | GENOMIC | PCR | paired | ILLUMINA | Illumina MiSeq | Total DNA and RNA extracted from the same environmental sample. DNA was PCR amplified using V4 primers. | fastq | 2014-01-15_January_SPOTsurface5m_DNA_R1.fastq | fastq | 2014-01-15_January_SPOTsurface5m_DNA_R2.fastq | 5m | 33.55 | -118.4 |