Accessing BCO-DMO data
log in    
Brought to you by BCO-DMO    

ERDDAP > tabledap > Data Access Form ?

Dataset Title:  Morphometrics of northern sand lance Ammodytes dubius offspring reared under
factorial CO2 x temperature conditions
Subscribe RSS
Institution:  BCO-DMO   (Dataset ID: bcodmo_dataset_749958)
Information:  Summary ? | License ? | ISO 19115 | Metadata | Background (external link) | Subset | Files | Make a graph
Variable ?   Optional
Constraint #1 ?
Constraint #2 ?
   Minimum ?
   or a List of Values ?
   Maximum ?
 trial (unitless) ?          1    4
 species (unitless) ?      
   - +  ?
 adult_collection_site (unitless) ?      
   - +  ?
 latitude (degrees_north) ?      
   - +  ?
  < slider >
 longitude (degrees_east) ?      
   - +  ?
  < slider >
 tank (unitless) ?          1    9
 replicate (unitless) ?          1    51
 temperature (degrees Celsius) ?          4.5    10.0
 pH (pH NBS) ?          7.43    8.16
 pCO2 (uatm) ?          379    2180
 fertilization_date (unitless) ?          "2016-12-02"    "2017-11-24"
 sample_date (unitless) ?          "2017-01-13"    "2018-01-31"
 age (days) ?          18    70
 sample_type (unitless) ?          "150 degree days po..."    "at hatch"
 SL (millimeters (mm)) ?          4.05    9.5
 SA (millimeters squared (mm^2)) ?          0.77    1.74
 YSA (millimeters squared (mm^2)) ?          0.0    0.291
 OGA (millimeters squared (mm^2)) ?          0.0    0.111
Server-side Functions ?
 distinct() ?
? ("Hover here to see a list of options. Click on an option to select it.Hover here to see a list of options. Click on an option to select it.Hover here to see a list of options. Click on an option to select it.Hover here to see a list of options. Click on an option to select it.Hover here to see a list of options. Click on an option to select it.")

File type: (more info)

(Documentation / Bypass this form ? )
(Please be patient. It may take a while to get the data.)


The Dataset Attribute Structure (.das) for this Dataset

Attributes {
 s {
  trial {
    Byte _FillValue 127;
    Byte actual_range 1, 4;
    String bcodmo_name "exp_id";
    String description "Trial number";
    String long_name "Trial";
    String units "unitless";
  species {
    String bcodmo_name "species";
    String description "Ammodytes dubius, the northern sand lance";
    String long_name "Species";
    String units "unitless";
  adult_collection_site {
    String bcodmo_name "site";
    String description "Site of the collection of wild adult spawners";
    String long_name "Adult Collection Site";
    String units "unitless";
  latitude {
    String _CoordinateAxisType "Lat";
    Float64 _FillValue NaN;
    Float64 actual_range 42.166183, 42.166183;
    String axis "Y";
    String bcodmo_name "latitude";
    Float64 colorBarMaximum 90.0;
    Float64 colorBarMinimum -90.0;
    String description "Latitude of adult collection site";
    String ioos_category "Location";
    String long_name "Latitude";
    String nerc_identifier "https://vocab.nerc.ac.uk/collection/P09/current/LATX/";
    String standard_name "latitude";
    String units "degrees_north";
  longitude {
    String _CoordinateAxisType "Lon";
    Float64 _FillValue NaN;
    Float64 actual_range -70.312275, -70.312275;
    String axis "X";
    String bcodmo_name "longitude";
    Float64 colorBarMaximum 180.0;
    Float64 colorBarMinimum -180.0;
    String description "Longitude of adult collection site";
    String ioos_category "Location";
    String long_name "Longitude";
    String nerc_identifier "https://vocab.nerc.ac.uk/collection/P09/current/LONX/";
    String standard_name "longitude";
    String units "degrees_east";
  tank {
    Byte _FillValue 127;
    Byte actual_range 1, 9;
    String bcodmo_name "tank";
    String description "Tank number";
    String long_name "Tank";
    String units "unitless";
  replicate {
    Byte _FillValue 127;
    Byte actual_range 1, 51;
    String bcodmo_name "replicate";
    String description "Within experiment replicate number";
    String long_name "Replicate";
    String units "unitless";
  temperature {
    Float32 _FillValue NaN;
    Float32 actual_range 4.5, 10.0;
    String bcodmo_name "temperature";
    String description "Average temperature experienced by fish in degrees celsius";
    String long_name "Temperature";
    String nerc_identifier "https://vocab.nerc.ac.uk/collection/P01/current/TEMPP901/";
    String units "degrees Celsius";
  pH {
    Float32 _FillValue NaN;
    Float32 actual_range 7.43, 8.16;
    String bcodmo_name "pH";
    Float64 colorBarMaximum 9.0;
    Float64 colorBarMinimum 7.0;
    String description "Average pH level experienced by the fish NBS";
    String long_name "Sea Water Ph Reported On Total Scale";
    String nerc_identifier "https://vocab.nerc.ac.uk/collection/P01/current/PHXXZZXX/";
    String units "pH NBS";
  pCO2 {
    Int16 _FillValue 32767;
    Int16 actual_range 379, 2180;
    String bcodmo_name "pCO2";
    String description "Calculated average pCO2 levels in uatm calculated by CO2SYS based on alkalinity, pH, and temperature";
    String long_name "P CO2";
    String nerc_identifier "https://vocab.nerc.ac.uk/collection/P01/current/PCO2C101/";
    String units "uatm";
  fertilization_date {
    String bcodmo_name "date";
    String description "Date offspring were fertilized by stripspawning 10+ adults of each sex; format: yyyy-mm-dd";
    String long_name "Fertilization Date";
    String nerc_identifier "https://vocab.nerc.ac.uk/collection/P01/current/ADATAA01/";
    String source_name "fertilization_date";
    String time_precision "1970-01-01";
    String units "unitless";
  sample_date {
    String bcodmo_name "date";
    String description "Date offspring were sampled from replicates and preserved; format: yyyy-mm-dd";
    String long_name "Sample Date";
    String nerc_identifier "https://vocab.nerc.ac.uk/collection/P01/current/ADATAA01/";
    String time_precision "1970-01-01";
    String units "unitless";
  age {
    Byte _FillValue 127;
    Byte actual_range 18, 70;
    String bcodmo_name "age";
    String description "The age of the larvae in days post-fertilization";
    String long_name "Age";
    String units "days";
  sample_type {
    String bcodmo_name "sample_type";
    String description "The sample group; either at hatch or 150 degree days post-hatch";
    String long_name "Sample Type";
    String units "unitless";
  SL {
    Float32 _FillValue NaN;
    Float32 actual_range 4.05, 9.5;
    String bcodmo_name "length";
    String description "Larval standard length (mm)";
    String long_name "SL";
    String units "millimeters (mm)";
  SA {
    Float32 _FillValue NaN;
    Float32 actual_range 0.77, 1.74;
    String bcodmo_name "unknown";
    String description "Larval somatic body area at hatch (mm^2)";
    String long_name "SA";
    String units "millimeters squared (mm^2)";
  YSA {
    Float32 _FillValue NaN;
    Float32 actual_range 0.0, 0.291;
    String bcodmo_name "unknown";
    String description "Larval yolk-sac area at hatch (mm^2)";
    String long_name "YSA";
    String units "millimeters squared (mm^2)";
  OGA {
    Float32 _FillValue NaN;
    Float32 actual_range 0.0, 0.111;
    String bcodmo_name "unknown";
    String description "Larval oil globule area at hatch (mm^2)";
    String long_name "OGA";
    String units "millimeters squared (mm^2)";
    String access_formats ".htmlTable,.csv,.json,.mat,.nc,.tsv,.esriCsv,.geoJson";
    String acquisition_description 
"Spawning-ripe sand lance were collected from SBNMS (42\\u00b0 9' 58.26'' N,
70\\u00b0 18' 44.19'' W) on 2 December 2016 and 22 November 2017, using a 1.3
\\u00d7 0.7 m beam trawl (6 mm mesh) towed at 3 knots for 15 minutes.
We tested factorial combinations of three pCO2 \\u00d7 three temperature
levels. The target for pCO2 controls was 400 \\u00b5atm (~8.15 pHNIST), a level
characteristic of the average open ocean and of the A. dubius spawning habitat
in late fall (Salisbury & J\\u00f6nsson, 2018). As contrasts, we chose 1,000
\\u00b5atm (~7.78 pH) and 2,100 \\u00b5atm (~7.48 pH), which correspond to
predicted average ocean pCO2 levels by the years 2100 and 2300, respectively.
Response traits: Sub-sampled hatchlings were measured for two body size
metrics; standard length, somatic body area (nearest 0.01 mm2), and two
measures of remaining endogenous energy reserves; yolk sac area (nearest 0.001
mm2), and oil globule area (nearest 0.001 mm2).";
    String awards_0_award_nid "650191";
    String awards_0_award_number "OCE-1536165";
    String awards_0_data_url "http://www.nsf.gov/awardsearch/showAward.do?AwardNumber=1536165";
    String awards_0_funder_name "NSF Division of Ocean Sciences";
    String awards_0_funding_acronym "NSF OCE";
    String awards_0_funding_source_nid "355";
    String awards_0_program_manager "Michael E. Sieracki";
    String awards_0_program_manager_nid "50446";
    String awards_1_award_nid "749349";
    String awards_1_award_number "RNE16-CTHCE-l";
    String awards_1_data_url "https://seagrant.unh.edu/project/research/sensitivity-larval-and-juvenile-sand-lance-ammodytes-dubius-stellwagen-bank";
    String awards_1_funder_name "New Hampshire Sea Grant";
    String awards_1_funding_acronym "NHSG";
    String awards_1_funding_source_nid "749348";
    String cdm_data_type "Other";
    String comment 
"Morphometrics of northern sand lance (A. dubius) offspring reared under 
   factorial CO2 x temperature conditions 
  PI: Hannes Baumann (Universtiy of Connecticut) 
  Co-PI: David Wiley (Stellwagen Bank National Marine Sanctuary, NOAA) 
  Version date: 20 November 2018";
    String Conventions "COARDS, CF-1.6, ACDD-1.3";
    String creator_email "info@bco-dmo.org";
    String creator_name "BCO-DMO";
    String creator_type "institution";
    String creator_url "https://www.bco-dmo.org/";
    String data_source "extract_data_as_tsv version 2.3  19 Dec 2019";
    String date_created "2018-11-20T19:49:23Z";
    String date_modified "2019-09-23T18:25:58Z";
    String defaultDataQuery "&amp;time&lt;now";
    String doi "10.1575/1912/bco-dmo.749958.1";
    Float64 Easternmost_Easting -70.312275;
    Float64 geospatial_lat_max 42.166183;
    Float64 geospatial_lat_min 42.166183;
    String geospatial_lat_units "degrees_north";
    Float64 geospatial_lon_max -70.312275;
    Float64 geospatial_lon_min -70.312275;
    String geospatial_lon_units "degrees_east";
    String history 
"2022-10-01T14:02:30Z (local files)
2022-10-01T14:02:30Z https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_749958.html";
    String infoUrl "https://www.bco-dmo.org/dataset/749958";
    String institution "BCO-DMO";
    String instruments_0_acronym "Beam trawl";
    String instruments_0_dataset_instrument_description "Spawning-ripe sand lance were collected using a beam trawl.";
    String instruments_0_dataset_instrument_nid "749962";
    String instruments_0_description 
"A beam trawl consists of a cone-shaped body ending in a bag or codend, which retains the catch. In these trawls the horizontal opening of the net is provided by a beam, made of wood or metal, which is up to 12 m long. The vertical opening is provided by two hoop-like trawl shoes mostly made from steel. No hydrodynamic forces are needed to keep a beam trawl open.  The beam trawl is normally towed on outriggers, one trawl on each side. 
While fishing for flatfish the beam trawl is often equipped with tickler chains to disturb the fish from the seabed. For operations on very rough fishing grounds they can be equipped with chain matrices. Chain matrices are rigged between the beam and the groundrope and prevent boulders/stones from being caught by the trawl. Shrimp beam trawls  are not so heavy and have smaller mesh sizes. A bobbin of groundrope with rubber bobbins keeps the shrimp beam trawl in contact with the bottom and gives flatfish the opportunity to escape.
Close bottom contact is necessary for successful operation. To avoid bycatch of most juvenile fishes selectivity devices are assembled (sieve nets, sorting grids, escape holes). While targeting flatfish the beam trawls are towed up to seven knots, therefore the gear is very heavy; the largest gears weighs up to 10 ton. The towing speed for shrimp is between 2.5 and 3 knots.
(from: http://www.fao.org/fishery/geartype/305/en)";
    String instruments_0_instrument_external_identifier "https://vocab.nerc.ac.uk/collection/L05/current/24/";
    String instruments_0_instrument_name "Beam Trawl";
    String instruments_0_instrument_nid "521";
    String instruments_0_supplied_name "beam trawl";
    String instruments_1_acronym "pH Sensor";
    String instruments_1_dataset_instrument_description "pH electrode (Hach pHD, calibrated weekly using 2-point pHNIST references)";
    String instruments_1_dataset_instrument_nid "749963";
    String instruments_1_description "General term for an instrument that measures the pH or how acidic or basic a solution is.";
    String instruments_1_instrument_name "pH Sensor";
    String instruments_1_instrument_nid "674";
    String instruments_1_supplied_name "pH electrode";
    String keywords "adult, adult_collection_site, age, bco, bco-dmo, biological, carbon, carbon dioxide, chemical, chemistry, co2, collection, data, dataset, date, dioxide, dmo, earth, Earth Science > Oceans > Ocean Chemistry > pH, erddap, fertilization, latitude, longitude, management, ocean, oceanography, oceans, office, oga, pCO2, preliminary, replicate, reported, sample, sample_date, sample_type, scale, science, sea, sea_water_ph_reported_on_total_scale, seawater, site, species, tank, temperature, time, total, trial, type, water, ysa";
    String keywords_vocabulary "GCMD Science Keywords";
    String license "https://www.bco-dmo.org/dataset/749958/license";
    String metadata_source "https://www.bco-dmo.org/api/dataset/749958";
    Float64 Northernmost_Northing 42.166183;
    String param_mapping "{'749958': {'latitude': 'master - latitude', 'longitude': 'master - longitude'}}";
    String parameter_source "https://www.bco-dmo.org/mapserver/dataset/749958/parameters";
    String people_0_affiliation "University of Connecticut";
    String people_0_affiliation_acronym "UConn";
    String people_0_person_name "Hannes Baumann";
    String people_0_person_nid "528586";
    String people_0_role "Principal Investigator";
    String people_0_role_type "originator";
    String people_1_affiliation "University of Connecticut";
    String people_1_affiliation_acronym "UConn - Avery Point";
    String people_1_person_name "Christopher S. Murray";
    String people_1_person_nid "742121";
    String people_1_role "Co-Principal Investigator";
    String people_1_role_type "originator";
    String people_2_affiliation "Stellwagen Bank National Marine Sanctuary";
    String people_2_person_name "David Wiley";
    String people_2_person_nid "749353";
    String people_2_role "Co-Principal Investigator";
    String people_2_role_type "originator";
    String people_3_affiliation "University of Connecticut";
    String people_3_affiliation_acronym "UConn";
    String people_3_person_name "Hannes Baumann";
    String people_3_person_nid "528586";
    String people_3_role "Contact";
    String people_3_role_type "related";
    String people_4_affiliation "Woods Hole Oceanographic Institution";
    String people_4_affiliation_acronym "WHOI BCO-DMO";
    String people_4_person_name "Shannon Rauch";
    String people_4_person_nid "51498";
    String people_4_role "BCO-DMO Data Manager";
    String people_4_role_type "related";
    String project "OA Stellwagen Sand Lance";
    String projects_0_acronym "OA Stellwagen Sand Lance";
    String projects_0_description 
This proposal will quantify the sensitivity of a key forage fish in the Northwest Atlantic to the individual and combined effects of the major factors comprising the ocean climate change syndrome: warming, acidification, and deoxygenation. We will rear embryos of Northern sand lance Ammodytes dubius, obtained by strip-spawning wild adults from the Stellwagen Bank National Marine Sanctuary (SBNMS) through larval and early juvenile stages in a purposebuilt factorial system at different factorial combinations of temperature × CO2 × oxygen.
Our first objective is to quantify individual and combined effects of temperature × CO2 (year 1) and temperature × CO2 × DO (year 2) on A. dubius growth and survival. We hypothesize that warming in combination with high CO2 (low pH) will have additive or synergistically negative effects, whereas the addition of low DO as a third stressor will have stark, synergistically negative effects on all traits.
Our second objective is to characterize the swimming behavior of A. dubius larvae that have been reared under combinations of elevated temperature × CO2. We hypothesize that combined stressors will have synergistically negative effects on the development of larval sensory systems, which express themselves and can thus be quantified as changes in larval swimming behavior.
Our third objective is to take advantage of the rare winter sampling activities for this project to quantify CO2, pH, and DO variability in benthic waters on Stellwagen Bank through bottle collections and short-term sensor deployments. We hypothesize that bottom water pH and DO levels during the sand lance spawning season might be routinely lower than levels in surface waters.";
    String projects_0_end_date "2018-07";
    String projects_0_geolocation "Stellwagen Bank, southern Gulf of Maine";
    String projects_0_name "Sensitivity of larval and juvenile sand lance Ammodytes dubius on Stellwagen Bank to predicted ocean warming, acidification, and deoxygenation";
    String projects_0_project_nid "749350";
    String projects_0_project_website "https://seagrant.unh.edu/project/research/sensitivity-larval-and-juvenile-sand-lance-ammodytes-dubius-stellwagen-bank";
    String projects_0_start_date "2016-08";
    String publisher_name "Biological and Chemical Oceanographic Data Management Office (BCO-DMO)";
    String publisher_type "institution";
    String sourceUrl "(local files)";
    Float64 Southernmost_Northing 42.166183;
    String standard_name_vocabulary "CF Standard Name Table v55";
    String subsetVariables "species,adult_collection_site,latitude,longitude";
    String summary "Morphometric source data of 2016-2018 experimental work on the sensitivity of northern sand lance (A. dubius) offspring to combined ocean warming and acidification.";
    String title "Morphometrics of northern sand lance Ammodytes dubius offspring reared under factorial CO2 x temperature conditions";
    String version "1";
    Float64 Westernmost_Easting -70.312275;
    String xml_source "osprey2erddap.update_xml() v1.3";


Using tabledap to Request Data and Graphs from Tabular Datasets

tabledap lets you request a data subset, a graph, or a map from a tabular dataset (for example, buoy data), via a specially formed URL. tabledap uses the OPeNDAP (external link) Data Access Protocol (DAP) (external link) and its selection constraints (external link).

The URL specifies what you want: the dataset, a description of the graph or the subset of the data, and the file type for the response.

Tabledap request URLs must be in the form
For example,
Thus, the query is often a comma-separated list of desired variable names, followed by a collection of constraints (e.g., variable<value), each preceded by '&' (which is interpreted as "AND").

For details, see the tabledap Documentation.

ERDDAP, Version 2.02
Disclaimers | Privacy Policy | Contact