http://lod.bco-dmo.org/id/dataset/772445
eng; USA
utf8
dataset
Highest level of data collection, from a common set of sensors or instrumentation, usually within the same research project
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
2019-07-02
ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
ISO 19115-2:2009(E)
Water temperature records for Acropora hyacinthus coral colonies located in either patch or fore reefs of the Palau Archipeglo from November 2017 to January 2020
2021-09-23
publication
2021-09-23
revision
Marine Biological Laboratory/Woods Hole Oceanographic Institution Library (MBLWHOI DLA)
2019-07-18
publication
https://doi.org/10.1575/1912/bco-dmo.772445.1
Stephen R. Palumbi
Stanford University
principalInvestigator
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
publisher
Cite this dataset as: Palumbi, S. R. (2021) Water temperature records for Acropora hyacinthus coral colonies located in either patch or fore reefs of the Palau Archipeglo from November 2017 to January 2020. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 2) Version Date 2021-09-23 [if applicable, indicate subset used]. doi:10.26008/1912/bco-dmo.772445.2 [access date]
Methods and Sampling: Temperature data loggers were deployed next to individual colonies of Acropora hyacinthus located in either patch or fore reefs of the Palau Archipeglo from November 2017 to January 2020. Multiple loggers were deployed on each reef (up to 5). Loggers were set to record water temperature every 10 minutes. Temperature data were trimmed at the very beginning and end of each recording so that all records have the same start and end point. Some records show missing data (labelled nd) because they were deployed at a later date or because they lost battery power towards the end of the deployment.
Location:
Patch and fore reefs of the Palau Archipelago, 7 N 134 E, depths ~0.5-6m
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1736736 Award URL: http://www.nsf.gov/awardsearch/showAward.do?AwardNumber=1736736
completed
Stephen R. Palumbi
Stanford University
831-655-6214
Hopkins Marine Station 120 Ocean View Blvd
Pacific Grove
CA
93950
USA
spalumbi@stanford.edu
pointOfContact
asNeeded
Dataset Version: 2
Unknown
Collection_date_time
ISO_DateTime_UTC
Temperature
Colony_tag
Latitude
Longitude
Reef_number
Reef_type
Species
Onset HOBO Pendant Temp logger, 64K (UA-001-64)
theme
None, User defined
Date and time
ISO_DateTime_UTC
water temperature
sample identification
latitude
longitude
site description
species
featureType
BCO-DMO Standard Parameters
Temperature Logger
instrument
BCO-DMO Standard Instruments
otherRestrictions
otherRestrictions
Access Constraints: none. Use Constraints: Please follow guidelines at: http://www.bco-dmo.org/terms-use Distribution liability: Under no circumstances shall BCO-DMO be liable for any direct, incidental, special, consequential, indirect, or punitive damages that result from the use of, or the inability to use, the materials in this data submission. If you are dissatisfied with any materials in this data submission your sole and exclusive remedy is to discontinue use.
Predicting the global location of heat tolerant corals: Palau patch reefs as a general model
https://www.bco-dmo.org/project/764077
Predicting the global location of heat tolerant corals: Palau patch reefs as a general model
<p><em>NSF Award Abstract:</em><br />
When coral reefs heat up just a few degrees above normal summer temperatures, a reaction called coral bleaching can occur in which single celled plants living inside coral cells are expelled. The coral turns from its normal tan color to bleached white, and because it is deprived of the normal food supply from its plant partner, most of these corals die. Yet, some corals naturally can survive high temperatures that cause others in the same species to bleach. Identifying where these heat tolerant corals are common would provide a general tool for protecting and restoring heat tolerant reefs. The investigators will conduct experiments on 30 patch reefs in Palau of very different sizes in two lagoons, record local temperatures for 400 corals, and test coral heat tolerance using a newly designed coral stress tank. Because large patch reefs generally heat up during daytime low tides, The investigators hypothesize that they are commonly home to heat resistant corals. They will also move heat tolerant corals to cooler locations to test the stability of heat resistance among corals. The stress tank technologies can be widely used in remote settings, and will provide a set of generalizable, practical tools for communities and managers to find and protect heat tolerant corals in reefs around the world. The work will advance undergraduate STEM education in California and Palau. A partnership with the Palau Community College will facilitate the engagement of Pacific Island communities and students. Students will receive interdisciplinary training in field research, genomics and bioinformatics and learn practical skills that will enable them to collect and interpret stress tank and temperature data. Broader outreach efforts will include the production and dissemination of a series of microdocumentaries and blog posts designed to bring the concept of a world-wide search for heat tolerant corals to a global audience.</p>
<p>Previous coral reef research has demonstrated that periodic high water temperatures can induce high heat tolerance in reef building corals through a combination of acclimation and selection at many genetic loci. Key questions include whether these kinds of heat tolerant habitats are common or rare, and whether their locations can be predicted by identifying coral reefs where daily temperature spikes regularly occur at low tide. This project will examine heat tolerance of 400 corals in the Acropora hyacinthus species complex across 30 patch reefs in Palau that experience variable temperature and flow profiles. This study will utilize a variety of methods to characterize spatial and temporal patterns of heat tolerance including: (1) the development of low-cost, portable heat stress tanks to quickly and affordably assess in situ conditions, (2) genomic assays of physiological condition to identify the genes and gene expression mechanisms that are responsible for heat tolerance, (3) high resolution temperature mapping to trace the role of temperature variation in producing stable, high temperature tolerance in reef building corals, and (4) reciprocal transplant experiments to evaluate whether heat resistant corals retain heat resistance when moved to cooler locations. This research will expand the geographic map of habitats with known heat tolerance, and expedite the ability to locate coral populations that may be most resistant to future ocean warming.</p>
Heat Tolerant Corals
largerWorkCitation
project
eng; USA
oceans
134.21919
134.66061
7.20388
7.92908
2017-11-11
2020-01-20
Palau
0
BCO-DMO catalogue of parameters from Water temperature records for Acropora hyacinthus coral colonies located in either patch or fore reefs of the Palau Archipeglo from November 2017 to January 2020
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
http://lod.bco-dmo.org/id/dataset-parameter/772518.rdf
Name: Collection_date_time
Units: unitless
Description: Date and time of temperature sample (Time zone: Pacific/Palau) in format mm-dd-yy hh:mm
http://lod.bco-dmo.org/id/dataset-parameter/772519.rdf
Name: ISO_DateTime_UTC
Units: unitless
Description: Date and time of temperature sample (Time zone: UTC) in ISO 8601 format YYYY-mm-ddTHH:MMZ
http://lod.bco-dmo.org/id/dataset-parameter/772520.rdf
Name: Temperature
Units: degrees Celsius
Description: Water temperature recorded in 10-minute intervals
http://lod.bco-dmo.org/id/dataset-parameter/772521.rdf
Name: Colony_tag
Units: unitless
Description: Individual identifier for a coral colony
http://lod.bco-dmo.org/id/dataset-parameter/772522.rdf
Name: Latitude
Units: untiless
Description: Latitude (South is negative)
http://lod.bco-dmo.org/id/dataset-parameter/772523.rdf
Name: Longitude
Units: unitless
Description: Longitude (West is negative)
http://lod.bco-dmo.org/id/dataset-parameter/772524.rdf
Name: Reef_number
Units: unitless
Description: Identifier for the reef the coral was collected from
http://lod.bco-dmo.org/id/dataset-parameter/772525.rdf
Name: Reef_type
Units: unitless
Description: Reef type description
http://lod.bco-dmo.org/id/dataset-parameter/772526.rdf
Name: Species
Units: unitless
Description: Coral species name
GB/NERC/BODC > British Oceanographic Data Centre, Natural Environment Research Council, United Kingdom
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
1235936671
https://darchive.mblwhoilibrary.org/bitstream/1912/27600/1/dataset-772445_water-temperature-palau-corals__v2.tsv
download
342543151
https://darchive.mblwhoilibrary.org/bitstream/1912/24358/1/dataset-772445_water-temperature-palau-corals__v1.tsv
download
https://doi.org/10.1575/1912/bco-dmo.772445.1
download
onLine
dataset
Temperature data loggers were deployed next to individual colonies of Acropora hyacinthus located in either patch or fore reefs of the Palau Archipeglo from November 2017 to January 2020. Multiple loggers were deployed on each reef (up to 5). Loggers were set to record water temperature every 10 minutes. Temperature data were trimmed at the very beginning and end of each recording so that all records have the same start and end point. Some records show missing data (labelled nd) because they were deployed at a later date or because they lost battery power towards the end of the deployment.
Location:
Patch and fore reefs of the Palau Archipelago, 7 N 134 E, depths ~0.5-6m
Specified by the Principal Investigator(s)
Issues:
Some individuals have a small amount of missing data for timepoints due to a later deployment date or due to device malfunction. This is rare, but these individuals were included to increase the total dataset. Missing data can be removed by trimming the start and/or end date, or by removing individuals.
Processing:
Raw data were exported as .csv files from the HOBOware application. All individual records were aligned to the same timepoint and combined into one file using a custom script. The beginning and end of the combined data file was trimmed by eye to reduce the amount of missing data.
BCO-DMO Data Manager Processing Notes:
* Original files submitted (2017-2018_Palau_coral_temperature_data.csv, 2017-2018_Palau_coral_temperature_meta_data.csv) combined and modified for reuse purposes. Changes described here. The originally submitted files can be found in the "Supplemental files" section of this page.
* added a conventional header with dataset name, PI name, version date
* modified parameter names to conform with BCO-DMO naming conventions
* blank values in this dataset are displayed as "nd" for "no data." nd is the default missing data identifier in the BCO-DMO system.
* Added latitude, longitude, reef number, and reef type, and coral species columns by joining with site information dataset. Joined water temperature file with a separate site information file to add the columns using colony_tag as the key.
* Temperature columns unpivoted to transform the data from multiple temperature columns for each colony to one temperature column and an added column containing the associated colony tags.
* Added ISO_DateTime_UTC in ISO 8601 format YYYY-mm-ddTHH:MMZ by converting date and time provided in local time (Pacific/Palau).
Data version 2:
* Data from 2018 to 2020 added to the dataset.
* Source files imported for data version 2: 2017-2020_Palau_coral_temperature_data_V2.csv
* The above source files was processed in the same way as version 1.
Specified by the Principal Investigator(s)
asNeeded
7.x-1.1
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
Onset HOBO Pendant Temp logger, 64K (UA-001-64)
Onset HOBO Pendant Temp logger, 64K (UA-001-64)
PI Supplied Instrument Name:
Onset HOBO Pendant Temp logger, 64K (UA-001-64) Instrument Name: Temperature Logger Instrument Short Name: Instrument Description: Records temperature data over a period of time.