Accessing BCO-DMO data
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BCO-DMO ERDDAP
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| Dataset Title: | [LesionDistance_GrowthHealing] - Effect of distance between coral lesions on tissue regeneration and skeletal growth at two sites on the backreef on either side of Cook’s Bay in Moorea, French Polynesia from May, 2012 through July, 2012 (Spatial patterns of coral-vermetid interactions: short-term effects and long-term consequences) 
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| Institution: | BCO-DMO (Dataset ID: bcodmo_dataset_777110) |
| Information: | Summary
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| FGDC
| ISO 19115
| Metadata
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Attributes {
s {
Coral {
Byte _FillValue 127;
String _Unsigned "false";
Byte actual_range 1, 94;
String bcodmo_name "sample";
String description "Coral ID Number";
String long_name "Coral";
String nerc_identifier "https://vocab.nerc.ac.uk/collection/P02/current/ACYC/";
String units "unitless";
}
Treatment {
String bcodmo_name "treatment";
String description "Experimental Treatment - A (control – no lesions) Bcentroids separated by 1.2cm); C (lesion centroids separated by 3.5cm); and D (lesion centroids separated by 6cm)";
String long_name "Treatment";
String units "unitless";
}
Block {
Byte _FillValue 127;
String _Unsigned "false";
Byte actual_range 1, 10;
String bcodmo_name "unknown";
String description "Experimental Block";
String long_name "Block";
String units "unitless";
}
Initial_Mass {
Float32 _FillValue NaN;
Float32 actual_range 50.615, 177.36;
String bcodmo_name "mass";
String description "Skeletal initial mass";
String long_name "Initial Mass";
String units "grams (g)";
}
Halfway_Mass {
Float32 _FillValue NaN;
Float32 actual_range 52.81, 177.425;
String bcodmo_name "mass";
String description "Skeletal mass after 20 days";
String long_name "Halfway Mass";
String units "grams (g)";
}
Final_Mass {
Float64 _FillValue NaN;
Float64 actual_range 55.00032059, 180.2058121;
String bcodmo_name "mass";
String description "Skeletal mass after 39 days";
String long_name "Final Mass";
String units "grams (g)";
}
Growth_Midpoint {
Float32 _FillValue NaN;
Float32 actual_range 0.066, 4.03;
String bcodmo_name "growth";
String description "Skeletal growth after 20 days";
String long_name "Growth Midpoint";
String units "grams (g)";
}
Growth_Final {
Float32 _FillValue NaN;
Float32 actual_range 1.567, 8.439;
String bcodmo_name "growth";
String description "Skeletal growth after 39 days";
String long_name "Growth Final";
String units "grams (g)";
}
Healing_Mid {
Float64 _FillValue NaN;
Float64 actual_range -0.191905536, 0.697545527;
String bcodmo_name "unknown";
String description "% of lesion regenerated after 20 days";
String long_name "Healing Mid";
String units "unitless";
}
Healing_Final {
Float64 _FillValue NaN;
Float64 actual_range 0.062982939, 0.989280711;
String bcodmo_name "unknown";
String description "% of lesion regenerated after 20 days";
String long_name "Healing Final";
String units "unitless";
}
latitude {
String _CoordinateAxisType "Lat";
Float64 _FillValue NaN;
Float64 actual_range -17.48, -17.48;
String axis "Y";
String bcodmo_name "latitude";
Float64 colorBarMaximum 90.0;
Float64 colorBarMinimum -90.0;
String description "Latitude of sampling. Positive values indicate North.";
String ioos_category "Location";
String long_name "Latitude";
String nerc_identifier "https://vocab.nerc.ac.uk/collection/P09/current/LATX/";
String standard_name "latitude";
String units "degrees_north";
}
longitude {
String _CoordinateAxisType "Lon";
Float64 _FillValue NaN;
Float64 actual_range -149.82, -149.82;
String axis "X";
String bcodmo_name "longitude";
Float64 colorBarMaximum 180.0;
Float64 colorBarMinimum -180.0;
String description "Longitude of sampling. Negative values indicate West.";
String ioos_category "Location";
String long_name "Longitude";
String nerc_identifier "https://vocab.nerc.ac.uk/collection/P09/current/LONX/";
String standard_name "longitude";
String units "degrees_east";
}
}
NC_GLOBAL {
String access_formats ".htmlTable,.csv,.json,.mat,.nc,.tsv,.esriCsv,.geoJson";
String acquisition_description
"Experimental corals were artificially damaged using a waterpik with lesion
centroids separated by 1.2cm, 3.5cm, and 6cm (or no damage for the control),
and buoyantly weighed.\\u00a0 After 20 and 39 days, corals were re-weighed to
determine buoyant mass and skeletal growth.\\u00a0 Coral lesions were also
photographed and images analyzed to assess the % of lesion with regenerated
tissue.\\u00a0Buoyant weight was determined by hanging the coral beneath a
balance suspended in seawater and using equations factoring in skeletal
density, seawater temperature, and a reference weight to determine the
skeletal weight.";
String awards_0_award_nid "540410";
String awards_0_award_number "OCE-1130359";
String awards_0_data_url "http://www.nsf.gov/awardsearch/showAward.do?AwardNumber=1130359";
String awards_0_funder_name "NSF Division of Ocean Sciences";
String awards_0_funding_acronym "NSF OCE";
String awards_0_funding_source_nid "355";
String awards_0_program_manager "David L. Garrison";
String awards_0_program_manager_nid "50534";
String cdm_data_type "Other";
String comment
"Photoquadrat Surveys of Coral Lesions
PI: Elizabeth Hamman
Version: 2019-09-20";
String Conventions "COARDS, CF-1.6, ACDD-1.3";
String creator_email "info@bco-dmo.org";
String creator_name "BCO-DMO";
String creator_type "institution";
String creator_url "https://www.bco-dmo.org/";
String data_source "extract_data_as_tsv version 2.3 19 Dec 2019";
String date_created "2019-09-19T19:57:25Z";
String date_modified "2019-09-24T15:13:22Z";
String defaultDataQuery "&time<now";
String doi "10.1575/1912/bco-dmo.777110.1";
Float64 Easternmost_Easting -149.82;
Float64 geospatial_lat_max -17.48;
Float64 geospatial_lat_min -17.48;
String geospatial_lat_units "degrees_north";
Float64 geospatial_lon_max -149.82;
Float64 geospatial_lon_min -149.82;
String geospatial_lon_units "degrees_east";
String history
"2024-11-23T17:18:55Z (local files)
2024-11-23T17:18:55Z https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_777110.html";
String infoUrl "https://www.bco-dmo.org/dataset/777110";
String institution "BCO-DMO";
String instruments_0_acronym "camera";
String instruments_0_dataset_instrument_description "Coral lesions were also photographed and images analyzed to assess the % of lesion with regenerated tissue.";
String instruments_0_dataset_instrument_nid "777194";
String instruments_0_description "All types of photographic equipment including stills, video, film and digital systems.";
String instruments_0_instrument_external_identifier "https://vocab.nerc.ac.uk/collection/L05/current/311/";
String instruments_0_instrument_name "Camera";
String instruments_0_instrument_nid "520";
String instruments_0_supplied_name "photographed";
String instruments_1_acronym "Scale";
String instruments_1_dataset_instrument_description "buoyantly weighed";
String instruments_1_dataset_instrument_nid "777195";
String instruments_1_description "An instrument used to measure weight or mass.";
String instruments_1_instrument_external_identifier "https://vocab.nerc.ac.uk/collection/L05/current/LAB13/";
String instruments_1_instrument_name "Scale";
String instruments_1_instrument_nid "714";
String instruments_1_supplied_name "weighted";
String keywords "bco, bco-dmo, biological, block, chemical, coral, data, dataset, dmo, erddap, final, Final_Mass, growth, Growth_Final, Growth_Midpoint, halfway, Halfway_Mass, healing, Healing_Final, Healing_Mid, initial, Initial_Mass, latitude, longitude, management, mass, mid, midpoint, oceanography, office, preliminary, treatment";
String license "https://www.bco-dmo.org/dataset/777110/license";
String metadata_source "https://www.bco-dmo.org/api/dataset/777110";
Float64 Northernmost_Northing -17.48;
String param_mapping "{'777110': {'lat': 'flag - latitude', 'lon': 'flag - longitude'}}";
String parameter_source "https://www.bco-dmo.org/mapserver/dataset/777110/parameters";
String people_0_affiliation "University of Georgia";
String people_0_affiliation_acronym "UGA";
String people_0_person_name "Elizabeth Hamman";
String people_0_person_nid "777112";
String people_0_role "Principal Investigator";
String people_0_role_type "originator";
String people_1_affiliation "University of Georgia";
String people_1_affiliation_acronym "UGA";
String people_1_person_name "Rebecca Atkins";
String people_1_person_nid "645007";
String people_1_role "Contact";
String people_1_role_type "related";
String people_2_affiliation "Woods Hole Oceanographic Institution";
String people_2_affiliation_acronym "WHOI BCO-DMO";
String people_2_person_name "Mathew Biddle";
String people_2_person_nid "708682";
String people_2_role "BCO-DMO Data Manager";
String people_2_role_type "related";
String project "Vermetids_Corals";
String projects_0_acronym "Vermetids_Corals";
String projects_0_description
"Description from NSF abstract:
Ecological surprises are most likely to be manifest in diverse communities where many interactions remain uninvestigated. Coral reefs harbor much of the world's biodiversity, and recent studies by the investigators suggest that one overlooked, but potentially important, biological interaction involves vermetid gastropods. Vermetid gastropods are nonmobile, tube-building snails that feed via an extensive mucus net. Vermetids reduce coral growth by up to 80%, and coral survival by as much as 60%. Because effects vary among coral taxa, vermetids may substantially alter the structure of coral communities as well as the community of fishes and invertebrates that inhabit the coral reef.
The investigators will conduct a suite of experimental and observational studies that: 1) quantify the effects of four species of vermetids across coral species to assess if species effects and responses are concordant or idiosyncratic; 2) use meta-analysis to compare effects of vermetids relative to other coral stressors and determine the factors that influence variation in coral responses; 3) determine the role of coral commensals that inhabit the branching coral, Pocillopora, and evaluate how the development of the commensal assemblage modifies the deleterious effects of vermetids; 4) determine how vermetid mucus nets affect the local environment of corals and evaluate several hypotheses about proposed mechanisms; and 5) assess the long-term implications of vermetids on coral communities and the fishes and invertebrates that depend on the coral.
Note: The Principal Investigator, Dr. Craig W. Osenberg, was at the University of Florida at the time the NSF award was granted. Dr. Osenberg moved to the University of Georgia during the summer of 2014 (current contact information).";
String projects_0_end_date "2015-08";
String projects_0_geolocation "Moorea, French Polynesia (-17.48 degrees S, -149.82 degrees W)";
String projects_0_name "Spatial patterns of coral-vermetid interactions: short-term effects and long-term consequences";
String projects_0_project_nid "540411";
String projects_0_start_date "2011-09";
String publisher_name "Biological and Chemical Oceanographic Data Management Office (BCO-DMO)";
String publisher_type "institution";
String sourceUrl "(local files)";
Float64 Southernmost_Northing -17.48;
String standard_name_vocabulary "CF Standard Name Table v55";
String subsetVariables "latitude,longitude";
String summary "Experimental corals were artificially damaged using a waterpik with lesion centroids separated by 1.2cm, 3.5cm, and 6cm (or no damage for the control), and buoyantly weighed. After 20 and 39 days, corals were re-weighed to determine buoyant mass and skeletal growth. Coral lesions were also photographed and images analyzed to assess the % of lesion with regenerated tissue.";
String title "[LesionDistance_GrowthHealing] - Effect of distance between coral lesions on tissue regeneration and skeletal growth at two sites on the backreef on either side of Cook’s Bay in Moorea, French Polynesia from May, 2012 through July, 2012 (Spatial patterns of coral-vermetid interactions: short-term effects and long-term consequences)";
String version "1";
Float64 Westernmost_Easting -149.82;
String xml_source "osprey2erddap.update_xml() v1.3";
}
}
Data Access Protocol (DAP) and its
selection constraints.
The URL specifies what you want: the dataset, a description of the graph or the subset of the data, and the file type for the response.
Tabledap request URLs must be in the form
https://coastwatch.pfeg.noaa.gov/erddap/tabledap/datasetID.fileType{?query}
For example,
https://coastwatch.pfeg.noaa.gov/erddap/tabledap/pmelTaoDySst.htmlTable?longitude,latitude,time,station,wmo_platform_code,T_25&time>=2015-05-23T12:00:00Z&time<=2015-05-31T12:00:00Z
Thus, the query is often a comma-separated list of desired variable names,
followed by a collection of
constraints (e.g., variable<value),
each preceded by '&' (which is interpreted as "AND").
For details, see the tabledap Documentation.