Accessing BCO-DMO data
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BCO-DMO ERDDAP
Accessing BCO-DMO data |
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| Dataset Title: | [Gross et al.: Pocillopora verrucosa colony growth] - P. verrucosa growth data used to parameterize growth-rate curve (Collaborative Research: Ocean Acidification and Coral Reefs: Scale Dependence and Adaptive Capacity) 
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| Institution: | BCO-DMO (Dataset ID: bcodmo_dataset_808261) |
| Information: | Summary
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| ISO 19115
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Attributes {
s {
site {
String bcodmo_name "Site_ID";
String description "LTER site at which colony is found";
String long_name "Site";
String units "unitless";
}
ID {
String bcodmo_name "sample";
String description "unique identifier for each coral colony";
String long_name "ID";
String nerc_identifier "https://vocab.nerc.ac.uk/collection/P02/current/ACYC/";
String units "unitless";
}
year {
Int16 _FillValue 32767;
Int16 actual_range 2011, 2017;
String bcodmo_name "year";
String description "year at the beginning of measurement";
String long_name "Year";
String nerc_identifier "https://vocab.nerc.ac.uk/collection/P01/current/YEARXXXX/";
String units "unitless";
}
d_begin {
Float32 _FillValue NaN;
Float32 actual_range 0.003, 0.112;
String bcodmo_name "diameter";
String description "effective colony diameter at beginning of annual interval (year t)";
String long_name "D Begin";
String units "meter (m)";
}
d_end {
Float32 _FillValue NaN;
Float32 actual_range 0.006, 0.124;
String bcodmo_name "diameter";
String description "effective colony diameter at end of annual interval (year t+1)";
String long_name "D End";
String units "meter (m)";
}
coral {
Float32 _FillValue NaN;
Float32 actual_range 0.0024, 0.7413;
String bcodmo_name "unknown";
String description "LTER site-wide coral cover at the beginning of annual interval i.e proportion of all photo-quadrats in a site.";
String long_name "Coral";
String units "proportion";
}
lat_max {
Float32 _FillValue NaN;
Float32 actual_range -17.48642, -17.48132;
String bcodmo_name "latitude";
Float64 colorBarMaximum 90.0;
Float64 colorBarMinimum -90.0;
String description "maximum latitude of sampling location bounding box";
String long_name "Latitude";
String nerc_identifier "https://vocab.nerc.ac.uk/collection/P09/current/LATX/";
String source_name "lat_max";
String standard_name "latitude";
String units "decimal degrees";
}
latitude {
String _CoordinateAxisType "Lat";
Float64 _FillValue NaN;
Float64 actual_range -17.47185, -17.46576;
String axis "Y";
String bcodmo_name "latitude";
Float64 colorBarMaximum 90.0;
Float64 colorBarMinimum -90.0;
String description "minimum latitude of sampling location bounding box";
String ioos_category "Location";
String long_name "Latitude";
String nerc_identifier "https://vocab.nerc.ac.uk/collection/P09/current/LATX/";
String standard_name "latitude";
String units "degrees_north";
}
lon_max {
Float64 _FillValue NaN;
Float64 actual_range -149.84559, -149.81168;
String bcodmo_name "longitude";
Float64 colorBarMaximum 180.0;
Float64 colorBarMinimum -180.0;
String description "maximum latitude of sampling location bounding box";
String long_name "Longitude";
String nerc_identifier "https://vocab.nerc.ac.uk/collection/P09/current/LONX/";
String source_name "lon_max";
String standard_name "longitude";
String units "decimal degrees";
}
longitude {
String _CoordinateAxisType "Lon";
Float64 _FillValue NaN;
Float64 actual_range -149.82982, -149.79617;
String axis "X";
String bcodmo_name "longitude";
Float64 colorBarMaximum 180.0;
Float64 colorBarMinimum -180.0;
String description "minimum longitude of sampling location bounding box";
String ioos_category "Location";
String long_name "Longitude";
String nerc_identifier "https://vocab.nerc.ac.uk/collection/P09/current/LONX/";
String standard_name "longitude";
String units "degrees_east";
}
}
NC_GLOBAL {
String access_formats ".htmlTable,.csv,.json,.mat,.nc,.tsv,.esriCsv,.geoJson";
String acquisition_description
"Photoquadrats (0.5 \\u00d7 0.5 m) were randomly located along a single 40-m
transect permanently marked at 10-m at each of LTER sites 1 and 2 along the
north shore of Mo'orea, French Polynesia.\\u00a0 Quadrats were photographed
annually in March or April.\\u00a0 Photoquadrats were recorded using SLR
cameras (Nikon) in housings (Ikelite) that were mounted on a framer. Cameras
were attached to strobes (Nikonos SB 105), and images included a scale.";
String awards_0_award_nid "535321";
String awards_0_award_number "OCE-1415300";
String awards_0_data_url "http://www.nsf.gov/awardsearch/showAward.do?AwardNumber=1415300";
String awards_0_funder_name "NSF Division of Ocean Sciences";
String awards_0_funding_acronym "NSF OCE";
String awards_0_funding_source_nid "355";
String awards_0_program_manager "David L. Garrison";
String awards_0_program_manager_nid "50534";
String cdm_data_type "Other";
String comment
"Growth data
PI: Kevin Gross
Data Version 1: 2020-04-27";
String Conventions "COARDS, CF-1.6, ACDD-1.3";
String creator_email "info@bco-dmo.org";
String creator_name "BCO-DMO";
String creator_type "institution";
String creator_url "https://www.bco-dmo.org/";
String data_source "extract_data_as_tsv version 2.3 19 Dec 2019";
String dataset_current_state "Final and no updates";
String date_created "2020-04-03T19:34:46Z";
String date_modified "2020-05-04T21:51:38Z";
String defaultDataQuery "&time<now";
String doi "10.26008/1912/bco-dmo.808261.1";
Float64 Easternmost_Easting -149.79617;
Float64 geospatial_lat_max -17.46576;
Float64 geospatial_lat_min -17.47185;
String geospatial_lat_units "degrees_north";
Float64 geospatial_lon_max -149.79617;
Float64 geospatial_lon_min -149.82982;
String geospatial_lon_units "degrees_east";
String history
"2024-11-21T08:59:47Z (local files)
2024-11-21T08:59:47Z https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_808261.html";
String infoUrl "https://www.bco-dmo.org/dataset/808261";
String institution "BCO-DMO";
String keywords "bco, bco-dmo, begin, biological, chemical, coral, d_begin, d_end, data, dataset, dmo, end, erddap, lat_min, latitude, lon_min, longitude, management, oceanography, office, preliminary, site, year";
String license "https://www.bco-dmo.org/dataset/808261/license";
String metadata_source "https://www.bco-dmo.org/api/dataset/808261";
Float64 Northernmost_Northing -17.46576;
String param_mapping "{'808261': {'lon_min': 'flag - longitude', 'lat_min': 'flag - latitude'}}";
String parameter_source "https://www.bco-dmo.org/mapserver/dataset/808261/parameters";
String people_0_affiliation "North Carolina State University";
String people_0_affiliation_acronym "NCSU";
String people_0_person_name "Kevin Gross";
String people_0_person_nid "535324";
String people_0_role "Principal Investigator";
String people_0_role_type "originator";
String people_1_affiliation "California State University Northridge";
String people_1_affiliation_acronym "CSU-Northridge";
String people_1_person_name "Robert Carpenter";
String people_1_person_nid "51535";
String people_1_role "Co-Principal Investigator";
String people_1_role_type "originator";
String people_2_affiliation "California State University Northridge";
String people_2_affiliation_acronym "CSU-Northridge";
String people_2_person_name "Peter J. Edmunds";
String people_2_person_nid "51536";
String people_2_role "Co-Principal Investigator";
String people_2_role_type "originator";
String people_3_affiliation "North Carolina State University";
String people_3_affiliation_acronym "NCSU";
String people_3_person_name "Kevin Gross";
String people_3_person_nid "535324";
String people_3_role "Contact";
String people_3_role_type "related";
String people_4_affiliation "Woods Hole Oceanographic Institution";
String people_4_affiliation_acronym "WHOI BCO-DMO";
String people_4_person_name "Karen Soenen";
String people_4_person_nid "748773";
String people_4_role "BCO-DMO Data Manager";
String people_4_role_type "related";
String project "OA coral adaptation";
String projects_0_acronym "OA coral adaptation";
String projects_0_description
"Extracted from the NSF award abstract:
This project focuses on the most serious threat to marine ecosystems, Ocean Acidification (OA), and addresses the problem in the most diverse and beautiful ecosystem on the planet, coral reefs. The research utilizes Moorea, French Polynesia as a model system, and builds from the NSF investment in the Moorea Coral Reef Long Term Ecological Research Site (LTER) to exploit physical and biological monitoring of coral reefs as a context for a program of studies focused on the ways in which OA will affect corals, calcified algae, and coral reef ecosystems. The project builds on a four-year NSF award with research in five new directions: (1) experiments of year-long duration, (2) studies of coral reefs to 20-m depth, (3) experiments in which carbon dioxide will be administered to plots of coral reef underwater, (4) measurements of the capacity of coral reef organisms to change through evolutionary and induced responses to improve their resistance to OA, and (5) application of emerging theories to couple studies of individual organisms to studies of whole coral reefs. Broader impacts will accrue through a better understanding of the ways in which OA will affect coral reefs that are the poster child for demonstrating climate change effects in the marine environment, and which provide income, food, and coastal protection to millions of people living in coastal areas, including in the United States.
This project focuses on the effects of Ocean Acidification on tropical coral reefs and builds on a program of research results from an existing 4-year award, and closely interfaces with the technical, hardware, and information infrastructure provided through the Moorea Coral Reef (MCR) LTER. The MCR-LTER, provides an unparalleled opportunity to partner with a study of OA effects on a coral reef with a location that arguably is better instrumented and studied in more ecological detail than any other coral reef in the world. Therefore, the results can be both contextualized by a high degree of ecological and physical relevance, and readily integrated into emerging theory seeking to predict the structure and function of coral reefs in warmer and more acidic future oceans. The existing award has involved a program of study in Moorea that has focused mostly on short-term organismic and ecological responses of corals and calcified algae, experiments conducted in mesocosms and flumes, and measurements of reef-scale calcification. This new award involves three new technical advances: for the first time, experiments will be conducted of year-long duration in replicate outdoor flumes; CO2 treatments will be administered to fully intact reef ecosystems in situ using replicated underwater flumes; and replicated common garden cultivation techniques will be used to explore within-species genetic variation in the response to OA conditions. Together, these tools will be used to support research on corals and calcified algae in three thematic areas: (1) tests for long-term (1 year) effects of OA on growth, performance, and fitness, (2) tests for depth-dependent effects of OA on reef communities at 20-m depth where light regimes are attenuated compared to shallow water, and (3) tests for beneficial responses to OA through intrinsic, within-species genetic variability and phenotypic plasticity. Some of the key experiments in these thematic areas will be designed to exploit integral projection models (IPMs) to couple organism with community responses, and to support the use of the metabolic theory of ecology (MTE) to address scale-dependence of OA effects on coral reef organisms and the function of the communities they build.
The following publications and data resulted from this project:
Comeau S, Carpenter RC, Lantz CA, Edmunds PJ. (2016) Parameterization of the response of calcification to temperature and pCO2 in the coral Acropora pulchra and the alga Lithophyllum kotschyanum. Coral Reefs 2016. DOI 10.1007/s00338-016-1425-0.calcification rates (2014)calcification rates (2010)
Comeau, S., Carpenter, R.C., Edmunds, P.J. (2016) Effects of pCO2 on photosynthesis and respiration of tropical scleractinian corals and calcified algae. ICES Journal of Marine Science doi:10.1093/icesjms/fsv267.respiration and photosynthesis Irespiration and photosynthesis II
Evensen, N.R. & Edmunds P. J. (2016) Interactive effects of ocean acidification and neighboring corals on the growth of Pocillopora verrucosa. Marine Biology, 163:148. doi: 10.1007/s00227-016-2921-zcoral growthseawater chemistrycoral colony interactions";
String projects_0_end_date "2018-12";
String projects_0_geolocation "Moorea, French Polynesia";
String projects_0_name "Collaborative Research: Ocean Acidification and Coral Reefs: Scale Dependence and Adaptive Capacity";
String projects_0_project_nid "535322";
String projects_0_project_website "http://mcr.lternet.edu";
String projects_0_start_date "2015-01";
String publisher_name "Biological and Chemical Oceanographic Data Management Office (BCO-DMO)";
String publisher_type "institution";
String sourceUrl "(local files)";
Float64 Southernmost_Northing -17.47185;
String standard_name_vocabulary "CF Standard Name Table v55";
String summary "P. verrucosa growth data used to parameterize growth-rate curve acquired at the Moorea LTER site, 17.5 S 149.8 W depth 10m between 2011 and 2017";
String title "[Gross et al.: Pocillopora verrucosa colony growth] - P. verrucosa growth data used to parameterize growth-rate curve (Collaborative Research: Ocean Acidification and Coral Reefs: Scale Dependence and Adaptive Capacity)";
String version "1";
Float64 Westernmost_Easting -149.82982;
String xml_source "osprey2erddap.update_xml() v1.5";
}
}
Data Access Protocol (DAP) and its
selection constraints.
The URL specifies what you want: the dataset, a description of the graph or the subset of the data, and the file type for the response.
Tabledap request URLs must be in the form
https://coastwatch.pfeg.noaa.gov/erddap/tabledap/datasetID.fileType{?query}
For example,
https://coastwatch.pfeg.noaa.gov/erddap/tabledap/pmelTaoDySst.htmlTable?longitude,latitude,time,station,wmo_platform_code,T_25&time>=2015-05-23T12:00:00Z&time<=2015-05-31T12:00:00Z
Thus, the query is often a comma-separated list of desired variable names,
followed by a collection of
constraints (e.g., variable<value),
each preceded by '&' (which is interpreted as "AND").
For details, see the tabledap Documentation.