BCO-DMO ERDDAP
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Cycle Biosynthetic_pathway ID_2R1 ID_19R1 ID_26R2 ID_31R1 ID_42R2 ID_51R3 ID_62R1 ID_68R4 ID_71R1 ID_81R2 ID_84R6
unitless unitless Fragments per Kilobase of transcript per Million mapped reads (FPKM) Fragments per Kilobase of transcript per Million mapped reads (FPKM) Fragments per Kilobase of transcript per Million mapped reads (FPKM) Fragments per Kilobase of transcript per Million mapped reads (FPKM) Fragments per Kilobase of transcript per Million mapped reads (FPKM) Fragments per Kilobase of transcript per Million mapped reads (FPKM) Fragments per Kilobase of transcript per Million mapped reads (FPKM) Fragments per Kilobase of transcript per Million mapped reads (FPKM) Fragments per Kilobase of transcript per Million mapped reads (FPKM) Fragments per Kilobase of transcript per Million mapped reads (FPKM) Fragments per Kilobase of transcript per Million mapped reads (FPKM)
3-hydroxypropionate/4-hydroxybutyrate cycle acetyl-CoA carboxylase 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.996 0.0 0.0 0.0
3-hydroxypropionate/4-hydroxybutyrate cycle methylmalonyl-CoA mutase 0.0 0.0 0.0 0.0 0.0 0.0 5.899 0.0 0.0 13.825 0.0
3-hydroxypropionate/4-hydroxybutyrate cycle 3-hydroxypropionyl-CoA dehydratase/enoyl-CoA hydratase-isomerase family protein (Swissprot/NR) 84.936 0.0 0.0 0.0 0.0 0.0 0.0 30.307 0.0 0.595 0.899
3-hydroxypropionate/4-hydroxybutyrate cycle crotonyl-CoA hydratase (enoyl CoA hydratase; crotonase) 0.0 0.0 0.0 0.0 0.0 17.533 0.0 143.689 0.0 0.0 87.791
3-hydroxypropionate/4-hydroxybutyrate cycle propionyl-CoA carboxylase (acyl CoA carboxylase) 0.0 0.0 0.0 0.0 0.0 0.0 0.0 82.965 0.0 0.0 58.753
Reductive acetyl-CoA pathway formate dehydrogenase (fdhA) 0.0 86.455 0.0 2.016 0.0 251.152 0.0 0.0 0.0 0.0 352.436
Reductive acetyl-CoA pathway methylenetetrahydrofolate dehydrogenase 12.463 0.0 0.0 0.0 1003.3 0.0 0.0 0.0 2.892 0.0 0.0
3-hydroxypropionate bicycle acetyl-CoA carboxylase biotin carboxyl carrier protein 0.0 0.0 0.0 0.0 0.0 11.762 0.0 0.0 0.0 0.0 0.0
3-hydroxypropionate bicycle acetyl-CoA carboxylase 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.996 0.0 0.0 0.0
3-hydroxypropionate bicycle succinyl-CoA: (S)-malate CoA-transferase (CoA transeferase) 0.0 0.0 0.0 0.0 0.0 0.0 0.0 124.337 0.0 0.0 0.0
3-hydroxypropionate bicycle succinate dehydrogenase/fumarate reductase 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 6.505 0.0 0.0
3-hydroxypropionate bicycle 2-methylfumaryl-CoA isomerase 0.0 0.0 0.0 0.0 0.0 7.663 0.0 0.0 0.0 0.0 0.0
Reductive tricarboxylic acid cycle (rTCA) aconitate hydratase(can be in TCA and rTCA) 3.689 0.0 2.571 0.0 0.0 0.0 0.0 0.0 68.596 215.152 6.14
Reductive tricarboxylic acid cycle (rTCA) isocitrate dyhydrogenase (used in TCA and rTCA) 0.0 0.0 0.0 0.0 0.0 4.529 0.0 0.0 0.0 0.0 0.0
Reductive tricarboxylic acid cycle (rTCA) 2-oxoglutarate dehydrogenase 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 2.392
Reductive tricarboxylic acid cycle (rTCA) dihydrolipoamide dehydrogenase (dihydrolipoyl dehydrogenase) 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 18.4 0.0
Reductive tricarboxylic acid cycle (rTCA) succinyl-CoA synthetase (succinyl-CoA ligase) (can be used in TCA and rTCA) 8.435 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
Reductive tricarboxylic acid cycle (rTCA) succinate dehydrogenase/fumarate reductase 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 6.505 0.0 0.0
Reductive tricarboxylic acid cycle (rTCA) fumarate hydratase (can be used in TCA and rTCA) 0.0 0.0 0.0 0.0 0.0 0.0 0.0 8.308 0.0 0.0 0.0
Reductive tricarboxylic acid cycle (rTCA) malate dehydrogenase (malate:quinone oxidoreductase; malic enzyme) 0.0 0.0 546.525 0.0 0.0 0.0 0.0 6.2 0.0 0.0 0.0
Reductive tricarboxylic acid cycle (rTCA) ATP citrate lyase/CoA ester lyase (Swissprot/NR) 0.0 0.0 0.0 0.0 0.0 0.0 0.0 69.605 0.0 0.0 0.0
Dicarboxylate-hydroxybutyrate cycle pyruvate synthase (pyruvate:ferredoxin oxidoreductase) 0.0 0.0 0.0 0.0 8.493 0.0 0.0 0.0 0.0 0.0 0.0
Dicarboxylate-hydroxybutyrate cycle pyruvate:water dikinase (phosphoenolpyruvate synthase) 0.0 0.0 0.0 0.0 0.0 0.0 0.0 14.972 0.0 0.0 0.0
Dicarboxylate-hydroxybutyrate cycle malate dehydrogenase (malate:quinone oxidoreductase; malic enzyme) 0.0 0.0 546.525 0.0 0.0 0.0 0.0 6.2 0.0 0.0 0.0
Dicarboxylate-hydroxybutyrate cycle fumarate hydratase 0.0 0.0 0.0 0.0 0.0 0.0 0.0 8.308 0.0 0.0 0.0
Dicarboxylate-hydroxybutyrate cycle succinate dehydrogenase/ fumarate reductase 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 6.505 0.0 0.0
Dicarboxylate-hydroxybutyrate cycle succinyl-CoA synthetase (succinyl-CoA ligase) 8.435 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
Dicarboxylate-hydroxybutyrate cycle acetyl-CoA C-acetyltransferase 0.0 0.0 151.046 0.0 0.0 0.0 0.0 19.33 0.0 0.0 0.0
Dicarboxylate-hydroxybutyrate cycle crotonyl-CoA hydratase (enoyl-CoA hydratase; crotonase) 0.0 0.0 0.0 0.0 0.0 17.533 0.0 143.689 0.0 0.0 87.791
Nitrogen metabolism nitrogenase iron protein(nifH)/Nitrogen regulatory protein P-II (Swissprot/NR) 0.0 0.0 0.0 148.365 0.0 0.0 0.0 0.0 0.0 0.0 0.0
Nitrogen metabolism nitrate reductase (narB) (molybdopterin-dependent oxidoreductase family protein) 2.048 0.0 0.0 7.49 0.0 8.742 0.0 0.0 17.283 0.0 0.0
Nitrogen metabolism nitrate reductase/nitrite oxidoreductase(narG/narH/narZ) 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 2.792 0.0 0.0
Nitrogen metabolism nitrite reductase (NAD(P)/FAD-dependent oxidoreductase; nirB) 0.0 0.0 0.0 0.0 0.0 20.619 0.0 0.0 0.0 0.0 3.681
Nitrogen metabolism nitrate transport protein NasD (Nitrate ABC transporter) 0.0 0.0 0.0 0.0 0.0 0.0 0.0 421.115 0.0 0.0 0.0
Nitrogen metabolism cytochrome c-552 (nitrite reductase nrfA)/cytochrome c (Swissprot/NR) 0.0 0.0 0.0 0.334 0.0 167.654 0.0 465.532 0.0 0.0 0.0
Nitrogen metabolism nitrite reductase (nirS) (cytochrome cd1 nitrite reductase) 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 2.626 0.0
Nitrogen metabolism nitric oxide reductase transcription regulator NorR 0.0 0.0 0.0 0.0 0.0 0.0 0.0 103.331 0.0 0.0 0.0
Nitrogen metabolism nitronate monooxygenase (nmo) 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 1.491 0.0
Nitrogen metabolism hydroxylamine reductase (hcp) 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 41.148
Nitrogen metabolism nitrilase/carbon-nitrogen hydrolase family (Swissprot/NR) 0.0 0.0 0.0 0.0 0.0 173.33 0.0 0.0 0.0 1.107 0.0
Nitrogen metabolism carbonic anhydrase ( carbonate dehydratase) 0.0 0.0 0.0 0.0 0.0 0.0 0.0 5.108 7.369 0.0 16.13
Sulfur metabolism Redox-sensitive transcriptional activator SoxR (LysR family transcriptional regulator) 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 125.65 0.0 0.0
Sulfur metabolism cytochrome c family protein 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 87.135 28.914 5.716
Sulfur metabolism adenylylsulfate reductase (APS reductase) 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 67.811
Sulfur metabolism adenylysulfate kinase (APS kinase) 0.0 0.0 0.0 0.0 0.0 0.0 263.302 10.448 0.0 0.0 0.0
Sulfur metabolism sulfate adenylyltransferase (ATP-sulfurylase; cysN) 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 28.346 0.0
Sulfur metabolism O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase (aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme) 1.831 0.0 0.0 4.401 0.0 0.0 0.0 6.167 0.0 12.81 0.0
Sulfur metabolism serine O-acetyltransferase (serine acetyltransferase; cysE) 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 4.246 0.0
Sulfur metabolism alkanesulfonate monooxygenase (LLM class flavin-dependent oxidoreductase) 0.0 0.0 0.0 0.0 0.0 888.836 0.0 97.44 0.0 0.0 0.0
Sulfur metabolism cysteine synthase (cysM) 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 55.344
Sulfur metabolism thiosulfate:quinone oxidoreductase (c-type cytochrome) 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 87.135 31.32 0.0
Sulfur metabolism methionine gamma lyase 0.0 0.0 0.0 0.0 0.0 0.0 0.0 69.262 0.0 0.0 0.0
Hydrogen metabolism [NiFe] hydrogenases 14.579 0.0 458.782 0.763 0.0 0.0 0.0 7.823 0.0 210.439 23.729
Hydrogen metabolism hyp operon (hypB, hybD; required for the maturation of hydrogenases) 0.0 0.0 0.0 0.0 0.0 0.0 201.645 0.0 0.0 14.237 0.0
Hydrogen metabolism sigma-54-dependent Fis family transcriptional regulator (sigma-54-dependent hydrogenase transcriptional regulator, Fis family; HoxA) 0.0 0.0 0.0 16.625 0.0 0.0 0.0 1.39 0.0 116.131 0.0
Hydrogen metabolism [FeFe] Hydrogenase 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 141.73 0.0 0.0
Methane metabolism tetrahydromethanopterin S-methyltransferase (mtrA) 0.0 0.0 0.0 0.0 0.0 0.0 0.0 4.27 0.0 0.0 0.0
Methane metabolism phosphate acetyltransferase (pta) 0.0 0.0 0.0 0.0 0.0 23.829 0.0 0.0 0.0 0.0 0.0
Methane metabolism CoB--CoM heterodisulfide reductase subunit C (hdrC)/Hypothetical protein (Swissprot/NR) 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 6.564
Methane metabolism 2-phosphosulfolactate phosphatase (comB) 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 40.342 0.0
Methane metabolism FO synthase/aminofutalosine synthase MqnE (Swissprot/NR) 0.0 0.0 0.0 32.679 0.0 0.0 0.0 0.0 0.0 0.0 0.0
Methane metabolism dimethyl-sulfide monooxygenase/5,10-methylene tetrahydromethanopterin reductase (Swissprot/NR) 0.0 0.0 0.0 0.0 0.0 75.969 0.0 0.0 0.0 0.0 0.0
Methane metabolism formate dehydrogenase (fdh) 0.0 86.455 0.0 2.016 0.0 251.152 0.0 0.0 0.0 0.0 352.436
Methane metabolism trimethylamine monooxygenase 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 15.527 0.0
Methane metabolism quinohemoprotein amine dehydrogenase (methylamine dehydrogenase; amine dehydrogenase) 0.0 0.0 0.0 0.0 0.0 32.228 0.0 0.0 0.0 0.0 0.0
Methane metabolism S-(hydroxymethyl)glutathione synthase (gfa) 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 35.218 0.0
Methane metabolism serine hydroxymethyltransferase (STHM) 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 9.598 0.0
Methane metabolism NADPH:quinone reductase (qor) 0.0 0.0 0.0 256.836 0.0 0.0 0.0 0.0 0.0 2.525 77.359
Methane metabolism methanol dehydrogenase/TPM domain-containing protein (Swissprot/NR) 540.183 0.0 0.0 0.0 0.0 31.989 0.0 0.0 0.0 0.0 0.0
Methane metabolism cytochrome c family protein 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 87.135 28.914 5.716
Methane metabolism Nif3 superfamily (GTP cyclohydrolase I; folE) 0.0 0.0 0.0 0.0 0.0 0.0 76.013 0.0 0.0 0.0 0.0
Methane metabolism bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase (folD) 0.0 0.0 0.0 0.0 0.0 31.693 0.0 0.0 0.0 0.0 0.0
Methane metabolism alcohol dehydrogenases (adh family) 0.0 0.0 968.764 0.0 0.0 0.0 0.0 1.467 0.0 0.0 0.0
Shikimate pathway 3-deoxy-7-phosphoheptulonate synthase (DHAP synthase; aroG/F/H) 0.0 0.0 0.0 0.0 1.299 0.0 0.0 0.0 0.0 0.0 0.0
Shikimate pathway Shikimate dehydrogenase (aroE) 0.0 0.0 10.181 0.0 0.0 13.195 0.0 0.0 0.0 0.0 0.0
Shikimate pathway 3-phosphoshikimate 1-carboxyvinyltransferase (aroA) 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 20.579 0.0 0.0
Tryptophan metabolism anthranilate synthase 0.0 0.0 0.0 0.0 0.0 0.0 16.045 0.0 0.0 56.72 27.969
Tryptophan metabolism tryptophan synthase alpha chain 0.0 0.0 14.718 0.0 0.0 0.0 0.0 0.0 0.0 4.163 0.0
Tryptophan metabolism HTH-type transcriptional regulator (TrpI; LysR family transcriptional regulator) 0.0 0.0 0.0 0.0 0.0 2.465 0.0 0.0 9.64 0.0 0.0
Tryptophan metabolism arylformamidase (kynurenine formamidase; kynB) 129.092 0.0 0.0 0.0 0.0 0.0 0.0 24.625 0.0 0.0 0.0
Tryptophan metabolism nitrilase (hydratase) 0.0 0.0 32.99 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
Tryptophan metabolism amidase 0.0 0.0 1.401 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
Tryptophan metabolism tryptophan 2,3-dioxygenase 535.002 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
Tryptophan metabolism kynureninase (kynU) 0.0 0.0 0.0 0.0 5.667 0.0 0.0 0.0 0.0 0.0 4.054
Tryptophan metabolism catalase 94.565 0.0 0.0 0.0 0.0 0.0 0.0 79.126 0.0 0.0 0.0
Tryptophan metabolism catalase-peroxidase 0.0 0.0 0.0 0.0 0.0 1.577 0.0 60.017 0.0 0.0 3.918
Tryptophan metabolism 2-oxoglutarate dehydrogenase E1 component 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 2.392
Tryptophan metabolism crotonyl-CoA hydratase (enoyl-CoA hydratase; crotonase) 0.0 0.0 0.0 0.0 0.0 17.533 0.0 143.689 0.0 0.0 87.791
Tryptophan metabolism 3-hydroxyacyl-CoA dehydrogenase (fadJ) 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 500.262 26.663 0.0
Tryptophan metabolism acetyl-CoA C-acetyltransferase 0.0 0.0 151.046 0.0 0.0 0.0 0.0 19.33 0.0 0.0 0.0
Phenylalanine metabolism phenylalanine dehydrogenase (Glu/Leu/Phe/Val dehydrogenase) 26.947 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
Phenylalanine metabolism D-amino-acid dehydrogenase 0.0 0.0 0.0 0.0 0.0 133.994 0.0 0.0 0.0 0.0 0.0
Phenylalanine metabolism aralkylamine dehydrogenase light chain/methylamine dehydrogenase (Swissprot/NR) 0.0 0.0 0.0 0.0 51.813 0.0 0.0 0.0 0.0 0.0 0.0
Phenylalanine metabolism catalase-peroxidase 0.0 0.0 0.0 0.0 0.0 1.577 0.0 60.017 0.0 0.0 3.918
Phenylalanine metabolism 4-hydroxyphenylpyruvate dioxygenase 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 127.582
Phenylalanine metabolism phenylacetaldehyde dehydrogenase (aldehyde dehydrogenase family) 1.777 0.0 3.491 0.0 14.06 77.784 0.0 62.61 0.0 0.0 0.0
Phenylalanine metabolism amidase 0.0 0.0 1.401 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
Phenylalanine metabolism 1,2-phenylacetyl-CoA epoxidase 0.0 0.0 0.0 0.0 0.0 72.156 0.0 0.0 0.0 0.0 0.0
Phenylalanine metabolism oxepin-CoA hydrolase / 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase (phenylacetic acid degradation bifunctional protein PaaZ) 4.706 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
Phenylalanine metabolism crotonyl-CoA hydratase (enoyl-CoA hydratase; crotonase) 0.0 0.0 0.0 0.0 0.0 17.533 0.0 143.689 0.0 0.0 87.791
Phenylalanine metabolism 3-hydroxybutyryl-CoA dehydrogenase 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 14.713 0.0
Phenylalanine metabolism 3,4-dihydroxyphenylacetate 2,3-dioxygenase 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 2.223 0.0
Phenylalanine metabolism 4-hydroxy-2-oxo-heptane-1,7-dioate aldolase (4-hydroxy-2-oxoheptanedioate aldolase) 0.0 0.0 0.0 0.0 0.0 0.0 0.0 189.872 0.0 0.0 37.62
Phenylalanine metabolism branched-chain amino acid aminotransferase (ilvE)/D-amino-acid transaminase (Swissprot/NR) 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 5.829 0.0
Tyrosine metabolism phenylalanine dehydrogenase (Glu/Leu/Phe/Val dehydrogenase) 26.947 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
Tyrosine metabolism aralkylamine dehydrogenase light chain/methylamine dehydrogenase (Swissprot/NR) 0.0 0.0 0.0 0.0 51.813 0.0 0.0 0.0 0.0 0.0 0.0
Tyrosine metabolism 4-hydroxyphenylpyruvate dioxygenase 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 127.582
Tyrosine metabolism anthranilate 3-monooxygenase oxygenase component/4-hydroxyphenylacetate 3-monooxygenase reductase component/Aromatic ring hydroxylase 0.0 0.0 0.0 4.723 0.0 0.0 0.0 0.0 0.0 0.0 3.867
Tyrosine metabolism 3,4-dihydroxyphenylacetate 2,3-dioxygenase 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 2.223 0.0
Tyrosine metabolism homogentisate 1,2-dioxygenase 0.0 0.0 0.0 0.0 79.675 0.0 0.0 1097.931 13.788 0.0 0.0
Tyrosine metabolism 4-hydroxy-2-oxo-heptane-1,7-dioate aldolase (4-hydroxy-2-oxoheptanedioate aldolase) 0.0 0.0 0.0 0.0 0.0 0.0 0.0 189.872 0.0 0.0 37.62
Phenazine biosynthesis trans-2,3-dihydro-3-hydroxyanthranilate isomerase (phzF) 0.0 0.0 0.0 0.0 0.0 0.0 0.0 1.986 0.0 0.0 0.0
Phenazine biosynthesis anthranilate synthase 0.0 0.0 0.0 0.0 0.0 0.0 16.045 0.0 0.0 56.72 27.969
D-alanine metabolism alanine racemase 8.11 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
D-alanine metabolism D-alanine transaminase 63.048 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
D-alanine metabolism D-alanine-D-alanine ligase 0.0 0.0 0.0 0.0 0.0 0.0 7.721 211.23 0.0 0.0 0.0
D-glutamate D-glutamine metabolism glutamate synthase 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 40.393 0.0 227.89
D-glutamate D-glutamine metabolism glutamate racemase 0.0 0.0 0.0 0.0 0.0 6.66 0.0 32.138 0.0 0.0 0.0
D-glutamate D-glutamine metabolism glutamine synthetase (glutamate-ammonia ligase) 0.0 0.0 0.0 0.0 0.0 0.0 0.0 57.48 0.0 0.0 0.0
D-glutamate D-glutamine metabolism glutaminase 0.0 0.0 2.383 0.0 0.0 0.0 0.0 0.0 0.0 0.0 87.757
Isoleucine metabolism (R)-citramalate synthase (cimA) 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 7.283 0.0 0.0
Isoleucine metabolism 3-isopropylmalate dehydrogenase 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 2.154
Isoleucine metabolism acetolactate synthase I/II/III large subunit (ilvB) 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 96.781
Isoleucine metabolism ketol-acid reductoisomerase (ilvC) 38.894 0.0 0.0 0.0 0.0 0.0 0.0 0.0 3.24 0.0 0.0
Isoleucine metabolism branched-chain amino acid aminotransferase (ilvE)/D-amino-acid transaminase (Swissprot/NR) 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 5.829 0.0
Isoleucine metabolism 2-oxoisovalerate dehydrogenase E1 component alpha subunit (3-methyl-2-oxobutanoate dehydrogenase) 0.0 0.0 0.0 0.0 0.0 0.0 38.531 76.831 0.0 3.532 3.85
Isoleucine metabolism acyl-CoA dehydrogenase 0.0 0.0 0.0 0.0 0.0 0.0 0.0 11.551 0.0 245.776 3.562
Isoleucine metabolism crotonyl-CoA hydratase (enoyl-CoA hydratase; crotonase) 0.0 0.0 0.0 0.0 0.0 17.533 0.0 143.689 0.0 0.0 87.791
Isoleucine metabolism 3-hydroxyacyl-CoA dehydrogenase (fadJ) 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 500.262 26.663 0.0
Isoleucine metabolism 3-ketoacyl-CoA thiolase (acetyl-CoA acyltransferase) 46.028 0.0 0.0 0.0 0.0 0.0 0.0 6.057 0.0 12.252 36.721
Leucine metabolism acetolactate synthase I/II/III large subunit (ilvB) 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 96.781
Leucine metabolism ketol-acid reductoisomerase (ilvC) 38.894 0.0 0.0 0.0 0.0 0.0 0.0 0.0 3.24 0.0 0.0
Leucine metabolism 3-isopropylmalate dehydrogenase 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 2.154
Leucine metabolism branched-chain amino acid aminotransferase (ilvE)/D-amino-acid transaminase (Swissprot/NR) 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 5.829 0.0
Leucine metabolism 2-oxoisovalerate dehydrogenase E1 component alpha subunit (3-methyl-2-oxobutanoate dehydrogenase) 0.0 0.0 0.0 0.0 0.0 0.0 38.531 76.831 0.0 3.532 3.85
Leucine metabolism acyl-CoA dehydrogenase 0.0 0.0 0.0 0.0 0.0 0.0 0.0 11.551 0.0 245.776 3.562
Leucine metabolism crotonyl-CoA hydratase (enoyl-CoA hydratase; crotonase) 0.0 0.0 0.0 0.0 0.0 17.533 0.0 143.689 0.0 0.0 87.791
Leucine metabolism 3-oxoacid CoA-transferase 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 34.569 0.0
Leucine metabolism 3-ketoacyl-CoA thiolase (acetyl-CoA acyltransferase) 46.028 0.0 0.0 0.0 0.0 0.0 0.0 6.057 0.0 12.252 36.721
Valine metabolism acetolactate synthase I/II/III large subunit (ilvB) 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 96.781
Valine metabolism ketol-acid reductoisomerase (ilvC) 38.894 0.0 0.0 0.0 0.0 0.0 0.0 0.0 3.24 0.0 0.0
Valine metabolism branched-chain amino acid aminotransferase (ilvE)/D-amino-acid transaminase (Swissprot/NR) 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 5.829 0.0
Valine metabolism valine-pyruvate aminotransferase 0.0 0.0 0.0 0.0 11.776 0.0 0.0 0.0 0.0 0.0 0.0
Valine metabolism 2-oxoisovalerate dehydrogenase E1 component alpha subunit (3-methyl-2-oxobutanoate dehydrogenase) 0.0 0.0 0.0 0.0 0.0 0.0 38.531 76.831 0.0 3.532 3.85
Valine metabolism acyl-CoA dehydrogenase 0.0 0.0 0.0 0.0 0.0 0.0 0.0 11.551 0.0 245.776 3.562
Valine metabolism crotonyl-CoA hydratase (enoyl-CoA hydratase; crotonase) 0.0 0.0 0.0 0.0 0.0 17.533 0.0 143.689 0.0 0.0 87.791
Valine metabolism 3-hydroxyacyl-CoA dehydrogenase (fadJ) 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 500.262 26.663 0.0
Valine metabolism beta-alanine-pyruvate transaminase (aspartate aminotransferase family protein) 0.0 0.0 0.0 0.0 0.0 0.0 0.0 48.268 0.0 0.0 0.0
Valine metabolism methylmalonate-semialdehyde dehydrogenase (CoA-acylating methylmalonate-semialdehyde dehydrogenase) 0.0 0.0 0.0 0.0 0.0 0.0 0.0 202.437 12.357 0.0 0.0
Valine metabolism methylmalonyl-CoA mutase 0.0 0.0 0.0 0.0 0.0 0.0 5.899 0.0 0.0 13.825 0.0
Serine metabolism serine O-acetyltransferase (serine acetyltransferase; cysE) 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 4.246 0.0
Serine metabolism hydroxypyruvate reductase (bifunctional glyoxylate/hydroxypyruvate reductase) 0.0 0.0 0.0 15.731 0.0 0.0 0.0 0.0 0.0 0.0 0.0
Serine metabolism 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase 0.0 0.0 0.0 2.194 0.0 112.764 0.0 0.0 0.0 0.0 3.341
Serine metabolism D-3-phosphoglycerate dehydrogenase (PHGDH) 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 5.802 0.0 0.0
Serine metabolism phosphoserine aminotransferase 0.0 0.0 0.0 0.0 3.882 0.0 0.0 0.0 0.0 0.0 0.0
Serine metabolism phosphoserine phosphatase 0.0 0.0 65.708 0.0 0.0 0.0 0.0 44.991 0.0 0.0 0.0
Serine metabolism tryptophan synthase alpha chain 0.0 0.0 14.718 0.0 0.0 0.0 0.0 0.0 0.0 4.163 0.0
Serine metabolism glycine hydroxymethyltransferase 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 9.598 0.0
Serine metabolism threonine aldolase 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 5.987
Serine metabolism 3-hydroxy acid dehydrogenase (ydfG)/carboxymuconolactone decarboxylase family protein (Swissprot/NR) 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 1.343 0.0 0.0
Serine metabolism threonine synthase 6.36 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
Serine metabolism aspartate kinase 0.0 0.0 0.0 0.0 0.0 0.0 0.0 4.292 2.935 0.0 0.0
Serine metabolism serine hydroxymethyltransferase (STHM) 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 9.598 0.0
Serine metabolism L-serine ammonia-lyase/choline dehydrogenase (Swissprot/NR) 0.0 0.0 5.331 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
homoserine metabolism aspartate kinase 0.0 0.0 0.0 0.0 0.0 0.0 0.0 4.292 2.935 0.0 0.0
homoserine metabolism homoserine lactone efflux protein/LysE family translocator (Swissprot/NR) 0.0 0.0 0.0 0.0 0.0 169.527 0.0 0.0 0.0 0.0 0.0
homoserine metabolism threonine synthase 6.36 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
homoserine metabolism homoserine O-acetyltransferase (metXA; metXS) 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.595 0.0
homoserine metabolism O-succinylhomoserine sulfhydrylase (metZ) 0.0 0.0 0.0 0.0 0.0 873.108 0.0 0.0 0.0 0.0 0.0
beta-alanine metabolism polyamine aminopropyltransferase (spermidine synthase; speE) 0.0 0.0 0.0 0.0 0.0 103.381 0.0 0.0 0.0 0.0 0.0
beta-alanine metabolism dihydropyrimidinase 0.0 0.0 0.0 0.0 0.0 0.0 0.0 99.558 0.0 0.0 0.0
beta-alanine metabolism beta-alanine-pyruvate transaminase (omega amino acid--pyruvate aminotransferase) 0.0 0.0 0.0 0.0 0.0 0.0 0.0 48.268 0.0 0.0 0.0
beta-alanine metabolism crotonyl-CoA hydratase (enoyl-CoA hydratase; crotonase) 0.0 0.0 0.0 0.0 0.0 17.533 0.0 143.689 0.0 0.0 87.791
beta-alanine metabolism acyl-CoA dehydrogenase 0.0 0.0 0.0 0.0 0.0 0.0 0.0 11.551 0.0 245.776 3.562
Peptidases aminopeptidases 0.0 0.0 0.0 79.86 0.0 0.0 0.0 151.996 14.82 168.203 0.0
Peptidases carboxypeptidases 0.0 0.0 0.0 0.0 0.0 0.0 5.055 0.0 0.0 0.0 0.0
Peptidases DD-endopeptidases 0.0 0.0 0.0 0.0 0.0 581.273 2625.771 0.0 0.0 0.0 0.0
Peptidases endopeptidases in PG degradation (oligopeptidases) 208.142 0.0 0.0 1.801 0.0 0.0 0.0 25.21 0.0 0.0 0.0
Peptidases hydrolases/peptidases 0.0 0.0 0.0 31.009 28.775 0.0 0.0 0.0 0.0 0.0 0.0
B12 biosynthesis cobalt-precorrin-6A reductase (cbiJ) 0.0 0.0 0.0 0.0 0.0 0.0 0.0 84.212 0.0 0.0 0.0
B12 biosynthesis Uroporphyrinogen-III C-methyltransferase (cobA/cysG) 0.0 0.0 0.0 0.0 0.0 0.0 117.091 0.0 0.0 0.0 0.0
B12 biosynthesis cobalt-precorrin-8 methylmutase (cbiC) 187.529 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
B12 biosynthesis precorrin-4 C(11)-methyltransferase (cobM) 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 75.24 0.0
B12 biosynthesis adenosylcobinamide-GDP ribazoletransferase (cobS) 0.0 0.0 0.0 0.0 0.0 0.0 0.0 123.422 0.0 0.0 0.0
B12 biosynthesis cobyrinic acid a,c-diamide synthase (cobB) (ParA family; ParA nucleotide binding domain) 34.528 0.0 0.0 42.613 0.0 0.0 0.0 0.0 0.0 2.452 46.388
B12 biosynthesis cobalamin biosynthesis protein (cobD) 0.0 0.0 0.0 0.0 0.0 1.548 0.0 0.0 0.0 0.0 0.0
B12 biosynthesis cobyric acid synthase (cobQ) 0.0 0.0 0.0 0.0 0.0 2064.098 0.0 0.0 0.0 0.0 0.0
B12 biosynthesis Uroporphyrinogen III decarboxylase (heme b biosynthesis) 0.0 0.0 0.0 0.0 0.0 31.348 0.0 0.0 0.0 3.724 0.0
Vitamin E biosynthesis 4-hydroxyphenylpyruvate dioxygenase 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 127.582
beta-oxidation to propionyl-CoA 3-ketoacyl-CoA thiolase (acetyl-CoA acyltransferase) 46.028 0.0 0.0 0.0 0.0 0.0 0.0 6.057 0.0 12.252 36.721
beta-oxidation to propionyl-CoA 3-hydroxyacyl-CoA dehydrogenase (fadJ) 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 500.262 26.663 0.0
beta-oxidation to propionyl-CoA acyl-CoA dehydrogenase 0.0 0.0 0.0 0.0 0.0 0.0 0.0 11.551 0.0 245.776 3.562
a-ketobutarte to propionyl-CoA 2-oxoisovalerate dehydrogenase E1 component alpha subunit (3-methyl-2-oxobutanoate dehydrogenase) 0.0 0.0 0.0 0.0 0.0 0.0 38.531 76.831 0.0 3.532 3.85
a-ketobutarte to propionyl-CoA acetyl-CoA carboxylase 0.0 0.0 0.0 0.0 0.0 0.0 0.0 23.996 0.0 0.0 0.0
a-ketobutarte to propionyl-CoA propionyl-CoA carboxylase (acyl CoA carboxylase) 0.0 0.0 0.0 0.0 0.0 0.0 0.0 82.965 0.0 0.0 58.753
a-ketobutarte to propionyl-CoA methylmalonyl-CoA mutase 0.0 0.0 0.0 0.0 0.0 0.0 5.899 0.0 0.0 13.825 0.0
Polyhydroxyalkanoate (PHA) production phaC 79.2 0.0 0.0 0.0 0.0 0.0 0.0 14.265 0.0 163524.0 0.0
aromatic degradation 4-oxalmesaconate hydratase/PIG-L family deacetylase (Swissprot/NR) 0.0 0.0 0.0 6.047 0.0 0.0 0.0 0.0 0.0 0.0 0.0
aromatic degradation 4-carboxymuconolactone decarboxylase 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 117.028 0.0
aromatic degradation catechol 2,3-dioxygenase (metapyrocatechase 2; VOC family protein) 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 387.572 0.0
aromatic degradation muconate cycloisomerase 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 5.292
aromatic degradation 3-oxoadipate CoA-transferase alpha subunit (CoA transferases) 0.0 0.0 0.0 0.0 0.0 0.0 7.299 0.0 0.0 0.0 0.0
aromatic degradation 3-ketoacyl-CoA thiolase (acetyl-CoA acyltransferase) 46.028 0.0 0.0 0.0 0.0 0.0 0.0 6.057 0.0 12.252 36.721
aromatic degradation probable tautomerase (tautomerase family protein) 0.0 0.0 59.08 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
aromatic degradation 3,4-dehydroadipyl-CoA semialdehyde dehydrogenase (paaZ) 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 11.906
aromatic degradation 3-hydroxyacyl-CoA dehydrogenase (fadJ) 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 500.262 26.663 0.0
aromatic degradation crotonyl-CoA hydratase (enoyl-CoA hydratase; crotonase) 0.0 0.0 0.0 0.0 0.0 17.533 0.0 143.689 0.0 0.0 87.791
aromatic degradation 3-hydroxybutyryl-CoA dehydrogenase 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 14.713 0.0
aromatic degradation benzoate membrane transporters 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 11.511 7.836
aromatic degradation 3-oxoacid CoA-transferase 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 34.569 0.0
polycyclic aromatic hydrocarbon (PAH) degradation methyl-accepting chemotaxis protein NahY 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 2.767 0.0 0.0
polycyclic aromatic hydrocarbon (PAH) degradation Phthalate transporter/MFS transporter (Swissprot/NR) 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 14.182 0.0
chemotaxis methyl-accepting chemotaxis protein McpA 0.0 0.0 0.0 0.0 0.0 0.0 0.0 25.96 0.0 0.0 0.0
chemotaxis methyl-accepting chemotaxis protein McpB 0.0 0.0 0.0 0.0 0.0 0.0 0.0 1.247 0.0 0.0 0.0
chemotaxis methyl-accepting chemotaxis protein McpG 0.0 0.0 0.0 29.017 0.0 0.0 0.0 0.0 0.0 0.0 0.0
chemotaxis methyl-accepting chemotaxis protein McpP 0.0 0.0 0.0 0.0 0.0 106.783 0.0 0.0 0.0 0.0 0.0
chemotaxis methyl-accepting chemotaxis protein McpQ 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 81.233 0.0
chemotaxis methyl-accepting chemotaxis protein McpS 0.0 0.0 0.0 0.0 27.32 0.0 0.0 0.0 0.0 0.0 0.0
chemotaxis methyl-accepting chemotaxis protein McpU 0.0 0.0 0.0 0.0 0.0 0.0 0.0 378.331 0.0 0.0 0.0
chemotaxis methyl-accepting chemotaxis protein 4/diguanylate synthase 0.0 0.0 0.0 0.0 0.0 85.734 0.0 0.0 0.0 0.0 0.0
chemotaxis chemotaxis protein CheY/response regulator 0.0 0.0 2.258 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
chemotaxis methyl-accepting chemotaxis protein TlpA 22.431 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
chemotaxis methyl-accepting chemotaxis protein PctA 0.0 0.0 0.0 0.0 0.0 1394.035 0.0 32.425 0.0 0.0 0.0
chemotaxis methyl-accepting chemotaxis protein PA2652 0.0 0.0 17.394 0.0 12.347 14.303 0.0 0.0 1.206 5.27 0.0
peptidoglycan biosynthesis UDP-N-acetylenolpyruvoylglucosamine reductase (UDP-N-acetylmuramate dehydrogenase; murB) 0.0 0.0 0.0 0.0 66.286 0.0 0.0 0.0 0.0 0.0 0.0
peptidoglycan biosynthesis UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (murF) 0.0 0.0 0.0 0.0 0.0 0.898 0.0 0.0 0.0 0.0 0.0
peptidoglycan degradation transglycosylase 0.0 0.0 0.0 0.0 0.0 3001.126 0.0 0.0 0.0 0.0 0.0
cell-cell communication Oligopeptide transport ATP-binding protein Opp; Oligopeptide transport ATP-binding protein AppD; (ABC transporter ATP-binding protein) 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 9.036 4.548 0.0
cell-cell communication oligopeptide transport ATP-binding protein AppD 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 112.317
cell-cell communication Acyl-homoserine lactone acylase/acylase (Swissprot/NR) 0.0 0.0 0.0 2.087 0.0 2.981 0.0 0.0 0.0 11.153 0.0
cell-cell communication anthranilate synthase 0.0 0.0 0.0 0.0 0.0 0.0 16.045 0.0 0.0 56.72 27.969
cell-cell communication HTH-type transcriptional regulator (TrpI; LysR family transcriptional regulator) 0.0 0.0 0.0 0.0 0.0 2.465 0.0 0.0 9.64 0.0 0.0
antimicrobial defense beta-lactamase (Metal Beta Lactamase (MBL)-fold metallohydrolase domain) 0.0 0.0 0.0 0.0 0.0 0.0 0.0 5.483 0.0 0.0 0.0
antimicrobial defense AcrB/AcrD/AcrF family protein (efflux RND transporter) 0.0 0.0 0.0 9.792 0.0 0.0 0.0 0.0 0.0 29.454 0.0
antibiotic production Bacitracin/Gramicidin/Tyrocidine synthase (nonribosomal peptide synthases; antibiotic synthesis) 0.0 0.0 5.958 12.952 4.967 339.427 14.501 340.212 20.703 3.825 121.374
antibiotic production gramicidin synthase subunit D 0.0 0.0 0.0 0.0 0.0 0.0 0.0 3.906 0.0 10.376 0.0
phosphate regulon (pho regulon) Pst phosphate transporter 0.0 0.0 0.0 13.62 0.0 676.723 1112.224 3.828 0.0 0.0 282.556
phosphate regulon (pho regulon) phosphate starvation-inducible protein PsiF 1.994 0.0 0.0 0.0 0.0 0.0 0.0 76.908 0.0 0.0 0.0
potassium trasnsporters (K+ transporters) Trk system potassium uptake protein TrkI/Trk system potassium uptake protein TrkH 0.0 0.0 0.0 0.0 0.0 0.0 0.0 11.783 0.0 4.84 0.0
potassium trasnsporters (K+ transporters) potential sensor protein KdpD 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 4.664 0.0 17.776
potassium trasnsporters (K+ transporters) K+-transporting ATPase ATPase B chain (KdpB) 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 2.239 0.0 0.0
potassium trasnsporters (K+ transporters) K+-transporting ATPase ATPase C chain (KdpC) 0.0 0.0 0.0 0.0 0.0 10.768 0.0 0.0 0.0 0.0 0.0
potassium trasnsporters (K+ transporters) K+-transporting ATPase ATPase A chain (KdpA) 0.0 0.0 0.0 0.0 0.0 0.0 0.0 24.691 0.0 0.0 0.0
oxidative stress defense mechanism catalase 94.565 0.0 0.0 0.0 0.0 0.0 0.0 79.126 0.0 0.0 0.0
oxidative stress defense mechanism catalase-peroxidase 0.0 0.0 0.0 0.0 0.0 1.577 0.0 60.017 0.0 0.0 3.918
oxidative stress defense mechanism alkyl hydroperoxide reductase subunit C 0.0 0.0 0.0 0.0 0.0 0.0 0.0 261.098 0.0 0.0 0.0

 
ERDDAP, Version 2.02
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