ERDDAP > tabledap > Data Access Form

Dataset Title:	[Tissue data from Keister et al. 2023] - Comparative analysis of tissue biomass and energy reserves of six coral species from nearshore and offshore reefs in Palau, Micronesia during March 2017 (Collaborative Research: Stability, flexibility, and functionality of thermally tolerant coral symbioses)
Institution:	BCO-DMO   (Dataset ID: bcodmo_dataset_907507_v1)
Information:	Summary | License | FGDC | ISO 19115 | Metadata | Background | Files | Make a graph

 

Variable	Optional Constraint #1		Optional Constraint #2		Minimum	Maximum
latitude (degrees_north)	!= =~ <= >= = < >		!= =~ <= >= = < >		7.248833	7.3245
longitude (degrees_east)	!= =~ <= >= = < >		!= =~ <= >= = < >		134.2358	134.4939
SampleID (unitless)	!= =~ <= >= = < >		!= =~ <= >= = < >		""	""
Species (unitless)	!= =~ <= >= = < >		!= =~ <= >= = < >		"Coelastrea aspera"	"Porites rus"
Site (unitless)	!= =~ <= >= = < >		!= =~ <= >= = < >		"Ngermid Bay"	"Rebotel Reef"
Collection_Date (unitless)	!= =~ <= >= = < >		!= =~ <= >= = < >		"2017-03-12"	"2017-03-25"
AFDW (grams)	!= =~ <= >= = < >		!= =~ <= >= = < >		10.89092	75.6734
Total_lipids (joules)	!= =~ <= >= = < >		!= =~ <= >= = < >		0.4227733	20.89902
Surface_Area (squared centimeters (cm^2))	!= =~ <= >= = < >		!= =~ <= >= = < >		3.8397	32.6471
Protein (joules)	!= =~ <= >= = < >		!= =~ <= >= = < >		8.94941	76.65082
Carbohydrate (joules)	!= =~ <= >= = < >		!= =~ <= >= = < >		4.40398E-4	0.107797
WAX (milligrams Ash Free Dry Weight per gram (mg AFDW/g))	!= =~ <= >= = < >		!= =~ <= >= = < >		0.6566649	557.1183
TAG (milligrams Ash Free Dry Weight per gram (mg AFDW/g))	!= =~ <= >= = < >		!= =~ <= >= = < >		0.0	19.11172
ST (milligrams Ash Free Dry Weight per gram (mg AFDW/g))	!= =~ <= >= = < >		!= =~ <= >= = < >		0.1281052	18.22141
Phospholipids (milligrams Ash Free Dry Weight per gram (mg AFDW/g))	!= =~ <= >= = < >		!= =~ <= >= = < >		0.5396771	73.48941

 

Server-side Functions

distinct()

orderBy orderByDescending orderByClosest orderByCount orderByLimit orderByMax orderByMin orderByMinMax orderByMean orderBySum (" latitude longitude SampleID Species Site Collection_Date AFDW Total_lipids Surface_Area Protein Carbohydrate WAX TAG ST Phospholipids latitude longitude SampleID Species Site Collection_Date AFDW Total_lipids Surface_Area Protein Carbohydrate WAX TAG ST Phospholipids latitude longitude SampleID Species Site Collection_Date AFDW Total_lipids Surface_Area Protein Carbohydrate WAX TAG ST Phospholipids latitude longitude SampleID Species Site Collection_Date AFDW Total_lipids Surface_Area Protein Carbohydrate WAX TAG ST Phospholipids latitude longitude SampleID Species Site Collection_Date AFDW Total_lipids Surface_Area Protein Carbohydrate WAX TAG ST Phospholipids ")

File type: (more information) .asc - View OPeNDAP-style ISO-8859-1 comma-separated text. .csv - Download a ISO-8859-1 comma-separated text table (line 1: names; line 2: units; ISO 8601 times). .csvp - Download a ISO-8859-1 .csv file with line 1: name (units). Times are ISO 8601 strings. .csv0 - Download a ISO-8859-1 .csv file without column names or units. Times are ISO 8601 strings. .dataTable - A JSON file formatted for use with the Google Visualization client library (Google Charts). .das - View the dataset's metadata via an ISO-8859-1 OPeNDAP Dataset Attribute Structure (DAS). .dds - View the dataset's structure via an ISO-8859-1 OPeNDAP Dataset Descriptor Structure (DDS). .dods - OPeNDAP clients use this to download the data in the DODS binary format. .esriCsv - Download a ISO_8859_1 .csv file for ESRI's ArcGIS 9.x and below (separate date and time columns). .fgdc - View the dataset's UTF-8 FGDC .xml metadata. .geoJson - Download longitude,latitude,otherColumns data as a UTF-8 GeoJSON .json file. .graph - View a Make A Graph web page. .help - View a web page with a description of tabledap. .html - View an OPeNDAP-style HTML Data Access Form. .htmlTable - View a UTF-8 .html web page with the data in a table. Times are ISO 8601 strings. .iso19115 - View the dataset's ISO 19115-2/19139 UTF-8 .xml metadata. .itx - Download an ISO-8859-1 Igor Text File. Each response column becomes a wave. .json - View a table-like UTF-8 JSON file (missing value = 'null'; times are ISO 8601 strings). .jsonlCSV1 - View a UTF-8 JSON Lines CSV file with column names on line 1 (mv = 'null'; times are ISO 8601 strings). .jsonlCSV - View a UTF-8 JSON Lines CSV file without column names (mv = 'null'; times are ISO 8601 strings). .jsonlKVP - View a UTF-8 JSON Lines file with Key:Value pairs (missing value = 'null'; times are ISO 8601 strings). .mat - Download a MATLAB binary file. .nc - Download a flat, table-like, NetCDF-3 binary file with COARDS/CF/ACDD metadata. .ncHeader - View the UTF-8 header (the metadata) for the NetCDF-3 .nc file. .ncCF - Download a NetCDF-3 CF Discrete Sampling Geometries file (Contiguous Ragged Array). .ncCFHeader - View the UTF-8 header (the metadata) for the .ncCF file. .ncCFMA - Download a NetCDF-3 CF Discrete Sampling Geometries file (Multidimensional Array). .ncCFMAHeader - View the UTF-8 header (the metadata) for the .ncCFMA file. .nccsv - Download a NetCDF-3-like 7-bit ASCII NCCSV .csv file with COARDS/CF/ACDD metadata. .nccsvMetadata - View the dataset's metadata as the top half of a 7-bit ASCII NCCSV .csv file. .ncoJson - Download a UTF-8 NCO lvl=2 JSON file with COARDS/CF/ACDD metadata. .odvTxt - Download longitude,latitude,time,otherColumns as an ISO-8859-1 ODV Generic Spreadsheet File (.txt). .subset - View an HTML form which uses faceted search to simplify picking subsets of the data. .tsv - Download a ISO-8859-1 tab-separated text table (line 1: names; line 2: units; ISO 8601 times). .tsvp - Download a ISO-8859-1 .tsv file with line 1: name (units). Times are ISO 8601 strings. .tsv0 - Download a ISO-8859-1 .tsv file without column names or units. Times are ISO 8601 strings. .wav - Download a .wav audio file. All columns must be numeric and of the same type. .xhtml - View a UTF-8 XHTML (XML) file with the data in a table. Times are ISO 8601 strings. .kml - View a .kml file, suitable for Google Earth. .smallPdf - View a small .pdf image file with a graph or map. .pdf - View a standard, medium-sized .pdf image file with a graph or map. .largePdf - View a large .pdf image file with a graph or map. .smallPng - View a small .png image file with a graph or map. .png - View a standard, medium-sized .png image file with a graph or map. .largePng - View a large .png image file with a graph or map. .transparentPng - View a .png image file (just the data, without axes, landmask, or legend).

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The Dataset Attribute Structure (.das) for this Dataset

Attributes {
 s {
  latitude {
    String _CoordinateAxisType "Lat";
    Float32 actual_range 7.248833, 7.3245;
    String axis "Y";
    String ioos_category "Location";
    String long_name "Latitude";
    String standard_name "latitude";
    String units "degrees_north";
  }
  longitude {
    String _CoordinateAxisType "Lon";
    Float32 actual_range 134.2358, 134.4939;
    String axis "X";
    String ioos_category "Location";
    String long_name "Longitude";
    String standard_name "longitude";
    String units "degrees_east";
  }
  SampleID {
    String long_name "Sampleid";
    String units "unitless";
  }
  Species {
    String long_name "Species";
    String units "unitless";
  }
  Site {
    String long_name "Site";
    String units "unitless";
  }
  Collection_Date {
    String long_name "Collection_date";
    String units "unitless";
  }
  AFDW {
    Float32 actual_range 10.89092, 75.6734;
    String long_name "Afdw";
    String units "grams";
  }
  Total_lipids {
    Float32 actual_range 0.4227733, 20.89902;
    String long_name "Total_lipids";
    String units "joules";
  }
  Surface_Area {
    Float32 actual_range 3.8397, 32.6471;
    String long_name "Surface_area";
    String units "squared centimeters (cm^2)";
  }
  Protein {
    Float32 actual_range 8.94941, 76.65082;
    String long_name "Protein";
    String units "joules";
  }
  Carbohydrate {
    Float32 actual_range 4.40398e-4, 0.107797;
    String long_name "Carbohydrate";
    String units "joules";
  }
  WAX {
    Float32 actual_range 0.6566649, 557.1183;
    String long_name "Wax";
    String units "milligrams Ash Free Dry Weight per gram (mg AFDW/g)";
  }
  TAG {
    Float32 actual_range 0.0, 19.11172;
    String long_name "Tag";
    String units "milligrams Ash Free Dry Weight per gram (mg AFDW/g)";
  }
  ST {
    Float32 actual_range 0.1281052, 18.22141;
    String long_name "St";
    String units "milligrams Ash Free Dry Weight per gram (mg AFDW/g)";
  }
  Phospholipids {
    Float32 actual_range 0.5396771, 73.48941;
    String long_name "Phospholipids";
    String units "milligrams Ash Free Dry Weight per gram (mg AFDW/g)";
  }
 }
  NC_GLOBAL {
    String cdm_data_type "Other";
    String Conventions "COARDS, CF-1.6, ACDD-1.3";
    String creator_email "info@bco-dmo.org";
    String creator_name "BCO-DMO";
    String creator_url "https://www.bco-dmo.org/";
    String doi "10.26008/1912/bco-dmo.907507.1";
    Float64 Easternmost_Easting 134.4939;
    Float64 geospatial_lat_max 7.3245;
    Float64 geospatial_lat_min 7.248833;
    String geospatial_lat_units "degrees_north";
    Float64 geospatial_lon_max 134.4939;
    Float64 geospatial_lon_min 134.2358;
    String geospatial_lon_units "degrees_east";
    String history 
"2024-09-26T22:50:43Z (local files)
2024-09-26T22:50:43Z https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_907507_v1.html";
    String infoUrl "https://www.bco-dmo.org/dataset/907507";
    String institution "BCO-DMO";
    String license 
"The data may be used and redistributed for free but is not intended
for legal use, since it may contain inaccuracies. Neither the data
Contributor, ERD, NOAA, nor the United States Government, nor any
of their employees or contractors, makes any warranty, express or
implied, including warranties of merchantability and fitness for a
particular purpose, or assumes any legal liability for the accuracy,
completeness, or usefulness, of this information.";
    Float64 Northernmost_Northing 7.3245;
    String sourceUrl "(local files)";
    Float64 Southernmost_Northing 7.248833;
    String summary "The nearshore reef habitats in Palau, Micronesia, serve as a representation of the challenges that coral populations may face in a future with warmer and more acidic oceans. Interestingly, corals inhabiting these nearshore habitats demonstrate a greater ability to withstand and recover from episodes of thermal stress compared to their offshore counterparts. In order to investigate the underlying physiological mechanisms behind this tolerance, we conducted a comparative analysis of six coral species found in both offshore and nearshore environments. Specifically, we examined parameters such as tissue biomass (ash-free dry weight cm−2), energy reserves (including protein, total lipid, and carbohydrate content), as well as several crucial lipid classes.";
    String title "[Tissue data from Keister et al. 2023] - Comparative analysis of tissue biomass and energy reserves of six coral species from nearshore and offshore reefs in Palau, Micronesia during March 2017 (Collaborative Research: Stability, flexibility, and functionality of thermally tolerant coral symbioses)";
    Float64 Westernmost_Easting 134.2358;
  }
}

 

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Using tabledap to Request Data and Graphs from Tabular Datasets

tabledap lets you request a data subset, a graph, or a map from a tabular dataset (for example, buoy data), via a specially formed URL. tabledap uses the OPeNDAP Data Access Protocol (DAP) and its selection constraints.

The URL specifies what you want: the dataset, a description of the graph or the subset of the data, and the file type for the response.

• (easy) You can get data by using the dataset's Data Access Form or Subset form. They make the URL for you.
• (easy) You can make a graph or map by using the dataset's Make A Graph form. It makes the URL for you.
• (not hard) You can bypass the forms and get the data or make a graph or map by generating the URL by hand or with a computer program or script.

Tabledap request URLs must be in the form
https://coastwatch.pfeg.noaa.gov/erddap/tabledap/datasetID.fileType{?query}
For example,
https://coastwatch.pfeg.noaa.gov/erddap/tabledap/pmelTaoDySst.htmlTable?longitude,latitude,time,station,wmo_platform_code,T_25&time>=2015-05-23T12:00:00Z&time<=2015-05-31T12:00:00Z
Thus, the query is often a comma-separated list of desired variable names, followed by a collection of constraints (e.g., variable<value), each preceded by '&' (which is interpreted as "AND").

For details, see the tabledap Documentation.

 

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