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Dataset Title:	[Reef seawater biogeochemistry from the Jardines de la Reina reef-system] - Reef seawater biogeochemistry data from samples collected in the Jardines de la Reina reef-system, Cuba in November of 2017 (Signature exometabolomes of Caribbean corals and influences on reef picoplankton)
Institution:	BCO-DMO   (Dataset ID: bcodmo_dataset_908026_v1)
Information:	Summary | License | FGDC | ISO 19115 | Metadata | Background | Files | Make a graph

 

Variable	Optional Constraint #1		Optional Constraint #2		Minimum	Maximum
reef (unitless)	!= =~ <= >= = < >		!= =~ <= >= = < >		"JR10B_benthic"	"OR2_surf"
site (unitless)	!= =~ <= >= = < >		!= =~ <= >= = < >		"JR10B"	"OR2"
date (unitless)	!= =~ <= >= = < >		!= =~ <= >= = < >		"2017-11-05"	"2017-11-20"
latitude (degrees_north)	!= =~ <= >= = < >		!= =~ <= >= = < >		20.5065	21.30333
longitude (degrees_east)	!= =~ <= >= = < >		!= =~ <= >= = < >		-79.59106	-78.38107
depth (m)	!= =~ <= >= = < >		!= =~ <= >= = < >		1	14
biome (unitless)	!= =~ <= >= = < >		!= =~ <= >= = < >		"offreef"	"reef"
sampling_depth (unitless)	!= =~ <= >= = < >		!= =~ <= >= = < >		"benthic"	"surf"
grouping (unitless)	!= =~ <= >= = < >		!= =~ <= >= = < >		"central"	"western"
DOC (micro molar (uM))	!= =~ <= >= = < >		!= =~ <= >= = < >		63.3	79.1
DN (micro molar (uM))	!= =~ <= >= = < >		!= =~ <= >= = < >		2.1	7.1
TOC (micro molar (uM))	!= =~ <= >= = < >		!= =~ <= >= = < >		59.7	84.5
TN (micro molar (uM))	!= =~ <= >= = < >		!= =~ <= >= = < >		0.1	5.5
Pro (cells per mL)	!= =~ <= >= = < >		!= =~ <= >= = < >		16566.0	60525.0
Syn (cells per mL)	!= =~ <= >= = < >		!= =~ <= >= = < >		9900	67106
Pico (cells per mL)	!= =~ <= >= = < >		!= =~ <= >= = < >		400.875	2714.0
Hbact (cells per mL)	!= =~ <= >= = < >		!= =~ <= >= = < >		314367.0	703575.0
Totalcells (cells per mL)	!= =~ <= >= = < >		!= =~ <= >= = < >		373865	731799
PO4 (micro molar (uM))	!= =~ <= >= = < >		!= =~ <= >= = < >		0.16	0.21
SI (micro molar (uM))	!= =~ <= >= = < >		!= =~ <= >= = < >		0.9	1.91
NO2 (micro molar (uM))	!= =~ <= >= = < >		!= =~ <= >= = < >		0.02	0.06815
NO3 (micro molar (uM))	!= =~ <= >= = < >		!= =~ <= >= = < >		-0.04	0.36
NH4 (micro molar (uM))	!= =~ <= >= = < >		!= =~ <= >= = < >		0.04	1.59
DON (micro molar (uM))	!= =~ <= >= = < >		!= =~ <= >= = < >		1.9	6.75
TON (micro molar (uM))	!= =~ <= >= = < >		!= =~ <= >= = < >		-0.2	5.1
Temp (degrees Celsius)	!= =~ <= >= = < >		!= =~ <= >= = < >		27.749	28.842
pH (pH scale)	!= =~ <= >= = < >		!= =~ <= >= = < >		8.15	8.31
Sal (parts per thousand (ppt))	!= =~ <= >= = < >		!= =~ <= >= = < >		36.87	37.54
DO (mg per L)	!= =~ <= >= = < >		!= =~ <= >= = < >		5.44	8.13
Tchl (micrograms per L)	!= =~ <= >= = < >		!= =~ <= >= = < >		0.08	0.94
TchltoPhaeo (unitless)	!= =~ <= >= = < >		!= =~ <= >= = < >		0.73	2.5

 

Server-side Functions

distinct()

orderBy orderByDescending orderByClosest orderByCount orderByLimit orderByMax orderByMin orderByMinMax orderByMean orderBySum (" reef site date latitude longitude depth biome sampling_depth grouping DOC DN TOC TN Pro Syn Pico Hbact Totalcells PO4 SI NO2 NO3 NH4 DON TON Temp pH Sal DO Tchl TchltoPhaeo reef site date latitude longitude depth biome sampling_depth grouping DOC DN TOC TN Pro Syn Pico Hbact Totalcells PO4 SI NO2 NO3 NH4 DON TON Temp pH Sal DO Tchl TchltoPhaeo reef site date latitude longitude depth biome sampling_depth grouping DOC DN TOC TN Pro Syn Pico Hbact Totalcells PO4 SI NO2 NO3 NH4 DON TON Temp pH Sal DO Tchl TchltoPhaeo reef site date latitude longitude depth biome sampling_depth grouping DOC DN TOC TN Pro Syn Pico Hbact Totalcells PO4 SI NO2 NO3 NH4 DON TON Temp pH Sal DO Tchl TchltoPhaeo reef site date latitude longitude depth biome sampling_depth grouping DOC DN TOC TN Pro Syn Pico Hbact Totalcells PO4 SI NO2 NO3 NH4 DON TON Temp pH Sal DO Tchl TchltoPhaeo ")

File type: (more information) .asc - View OPeNDAP-style ISO-8859-1 comma-separated text. .csv - Download a ISO-8859-1 comma-separated text table (line 1: names; line 2: units; ISO 8601 times). .csvp - Download a ISO-8859-1 .csv file with line 1: name (units). Times are ISO 8601 strings. .csv0 - Download a ISO-8859-1 .csv file without column names or units. Times are ISO 8601 strings. .dataTable - A JSON file formatted for use with the Google Visualization client library (Google Charts). .das - View the dataset's metadata via an ISO-8859-1 OPeNDAP Dataset Attribute Structure (DAS). .dds - View the dataset's structure via an ISO-8859-1 OPeNDAP Dataset Descriptor Structure (DDS). .dods - OPeNDAP clients use this to download the data in the DODS binary format. .esriCsv - Download a ISO_8859_1 .csv file for ESRI's ArcGIS 9.x and below (separate date and time columns). .fgdc - View the dataset's UTF-8 FGDC .xml metadata. .geoJson - Download longitude,latitude,otherColumns data as a UTF-8 GeoJSON .json file. .graph - View a Make A Graph web page. .help - View a web page with a description of tabledap. .html - View an OPeNDAP-style HTML Data Access Form. .htmlTable - View a UTF-8 .html web page with the data in a table. Times are ISO 8601 strings. .iso19115 - View the dataset's ISO 19115-2/19139 UTF-8 .xml metadata. .itx - Download an ISO-8859-1 Igor Text File. Each response column becomes a wave. .json - View a table-like UTF-8 JSON file (missing value = 'null'; times are ISO 8601 strings). .jsonlCSV1 - View a UTF-8 JSON Lines CSV file with column names on line 1 (mv = 'null'; times are ISO 8601 strings). .jsonlCSV - View a UTF-8 JSON Lines CSV file without column names (mv = 'null'; times are ISO 8601 strings). .jsonlKVP - View a UTF-8 JSON Lines file with Key:Value pairs (missing value = 'null'; times are ISO 8601 strings). .mat - Download a MATLAB binary file. .nc - Download a flat, table-like, NetCDF-3 binary file with COARDS/CF/ACDD metadata. .ncHeader - View the UTF-8 header (the metadata) for the NetCDF-3 .nc file. .ncCF - Download a NetCDF-3 CF Discrete Sampling Geometries file (Contiguous Ragged Array). .ncCFHeader - View the UTF-8 header (the metadata) for the .ncCF file. .ncCFMA - Download a NetCDF-3 CF Discrete Sampling Geometries file (Multidimensional Array). .ncCFMAHeader - View the UTF-8 header (the metadata) for the .ncCFMA file. .nccsv - Download a NetCDF-3-like 7-bit ASCII NCCSV .csv file with COARDS/CF/ACDD metadata. .nccsvMetadata - View the dataset's metadata as the top half of a 7-bit ASCII NCCSV .csv file. .ncoJson - Download a UTF-8 NCO lvl=2 JSON file with COARDS/CF/ACDD metadata. .odvTxt - Download longitude,latitude,time,otherColumns as an ISO-8859-1 ODV Generic Spreadsheet File (.txt). .subset - View an HTML form which uses faceted search to simplify picking subsets of the data. .tsv - Download a ISO-8859-1 tab-separated text table (line 1: names; line 2: units; ISO 8601 times). .tsvp - Download a ISO-8859-1 .tsv file with line 1: name (units). Times are ISO 8601 strings. .tsv0 - Download a ISO-8859-1 .tsv file without column names or units. Times are ISO 8601 strings. .wav - Download a .wav audio file. All columns must be numeric and of the same type. .xhtml - View a UTF-8 XHTML (XML) file with the data in a table. Times are ISO 8601 strings. .kml - View a .kml file, suitable for Google Earth. .smallPdf - View a small .pdf image file with a graph or map. .pdf - View a standard, medium-sized .pdf image file with a graph or map. .largePdf - View a large .pdf image file with a graph or map. .smallPng - View a small .png image file with a graph or map. .png - View a standard, medium-sized .png image file with a graph or map. .largePng - View a large .png image file with a graph or map. .transparentPng - View a .png image file (just the data, without axes, landmask, or legend).

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The Dataset Attribute Structure (.das) for this Dataset

Attributes {
 s {
  reef {
    String long_name "Reef";
    String units "unitless";
  }
  site {
    String long_name "Site";
    String units "unitless";
  }
  date {
    String long_name "Date";
    String units "unitless";
  }
  latitude {
    String _CoordinateAxisType "Lat";
    Float32 actual_range 20.5065, 21.30333;
    String axis "Y";
    String ioos_category "Location";
    String long_name "Latitude";
    String standard_name "latitude";
    String units "degrees_north";
  }
  longitude {
    String _CoordinateAxisType "Lon";
    Float32 actual_range -79.59106, -78.38107;
    String axis "X";
    String ioos_category "Location";
    String long_name "Longitude";
    String standard_name "longitude";
    String units "degrees_east";
  }
  depth {
    String _CoordinateAxisType "Height";
    String _CoordinateZisPositive "down";
    Int32 actual_range 1, 14;
    String axis "Z";
    String ioos_category "Location";
    String long_name "Depth";
    String positive "down";
    String standard_name "depth";
    String units "m";
  }
  biome {
    String long_name "Biome";
    String units "unitless";
  }
  sampling_depth {
    String long_name "Sampling_depth";
    String units "unitless";
  }
  grouping {
    String long_name "Grouping";
    String units "unitless";
  }
  DOC {
    Float32 actual_range 63.3, 79.1;
    String long_name "Doc";
    String units "micro molar (uM)";
  }
  DN {
    Float32 actual_range 2.1, 7.1;
    String long_name "Dn";
    String units "micro molar (uM)";
  }
  TOC {
    Float32 actual_range 59.7, 84.5;
    String long_name "Toc";
    String units "micro molar (uM)";
  }
  TN {
    Float32 actual_range 0.1, 5.5;
    String long_name "Tn";
    String units "micro molar (uM)";
  }
  Pro {
    Float32 actual_range 16566.0, 60525.0;
    String long_name "Pro";
    String units "cells per mL";
  }
  Syn {
    Int32 actual_range 9900, 67106;
    String long_name "Syn";
    String units "cells per mL";
  }
  Pico {
    Float32 actual_range 400.875, 2714.0;
    String long_name "Pico";
    String units "cells per mL";
  }
  Hbact {
    Float32 actual_range 314367.0, 703575.0;
    String long_name "Hbact";
    String units "cells per mL";
  }
  Totalcells {
    Int32 actual_range 373865, 731799;
    String long_name "Totalcells";
    String units "cells per mL";
  }
  PO4 {
    Float32 actual_range 0.16, 0.21;
    String long_name "Po4";
    String units "micro molar (uM)";
  }
  SI {
    Float32 actual_range 0.9, 1.91;
    String long_name "Si";
    String units "micro molar (uM)";
  }
  NO2 {
    Float32 actual_range 0.02, 0.06815;
    String long_name "No2";
    String units "micro molar (uM)";
  }
  NO3 {
    Float32 actual_range -0.04, 0.36;
    String long_name "No3";
    String units "micro molar (uM)";
  }
  NH4 {
    Float32 actual_range 0.04, 1.59;
    String long_name "Nh4";
    String units "micro molar (uM)";
  }
  DON {
    Float32 actual_range 1.9, 6.75;
    String long_name "Don";
    String units "micro molar (uM)";
  }
  TON {
    Float32 actual_range -0.2, 5.1;
    String long_name "Ton";
    String units "micro molar (uM)";
  }
  Temp {
    Float32 actual_range 27.749, 28.842;
    String long_name "Temp";
    String units "degrees Celsius";
  }
  pH {
    Float32 actual_range 8.15, 8.31;
    String long_name "Ph";
    String units "pH scale";
  }
  Sal {
    Float32 actual_range 36.87, 37.54;
    String long_name "Sal";
    String units "parts per thousand (ppt)";
  }
  DO {
    Float32 actual_range 5.44, 8.13;
    String long_name "Do";
    String units "mg per L";
  }
  Tchl {
    Float32 actual_range 0.08, 0.94;
    String long_name "Tchl";
    String units "micrograms per L";
  }
  TchltoPhaeo {
    Float32 actual_range 0.73, 2.5;
    String long_name "Tchltophaeo";
    String units "unitless";
  }
 }
  NC_GLOBAL {
    String cdm_data_type "Other";
    String Conventions "COARDS, CF-1.6, ACDD-1.3";
    String creator_email "info@bco-dmo.org";
    String creator_name "BCO-DMO";
    String creator_url "https://www.bco-dmo.org/";
    String doi "10.26008/1912/bco-dmo.908026.1";
    Float64 Easternmost_Easting -78.38107;
    Float64 geospatial_lat_max 21.30333;
    Float64 geospatial_lat_min 20.5065;
    String geospatial_lat_units "degrees_north";
    Float64 geospatial_lon_max -78.38107;
    Float64 geospatial_lon_min -79.59106;
    String geospatial_lon_units "degrees_east";
    Float64 geospatial_vertical_max 14.0;
    Float64 geospatial_vertical_min 1.0;
    String geospatial_vertical_positive "down";
    String geospatial_vertical_units "m";
    String history 
"2024-11-20T09:16:00Z (local files)
2024-11-20T09:16:00Z https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_908026_v1.html";
    String infoUrl "https://www.bco-dmo.org/dataset/908026";
    String institution "BCO-DMO";
    String license 
"The data may be used and redistributed for free but is not intended
for legal use, since it may contain inaccuracies. Neither the data
Contributor, ERD, NOAA, nor the United States Government, nor any
of their employees or contractors, makes any warranty, express or
implied, including warranties of merchantability and fitness for a
particular purpose, or assumes any legal liability for the accuracy,
completeness, or usefulness, of this information.";
    Float64 Northernmost_Northing 21.30333;
    String sourceUrl "(local files)";
    Float64 Southernmost_Northing 20.5065;
    String summary 
"Reef depth and reef surface seawater samples were collected from reefs in Jardines de la Reina and subjected to targeted and untargeted liquid chromatography mass spectrometry (LC-MS) methods in addition to a suite of biogeochemical measurements (inorganic and organic nutrient concentrations, microbial cell abundances, chlorophyll a concentrations, and physicochemical properties). 
Raw and .mzML data files from the LC-MS methods are located at MetaboLights database, using accession number MTBLS1820. The link is: https://www.ebi.ac.uk/metabolights/MTBLS1820/.

These data were published in Weber et al. (2020).";
    String title "[Reef seawater biogeochemistry from the Jardines de la Reina reef-system] - Reef seawater biogeochemistry data from samples collected in the Jardines de la Reina reef-system, Cuba in November of 2017 (Signature exometabolomes of Caribbean corals and influences on reef picoplankton)";
    Float64 Westernmost_Easting -79.59106;
  }
}

 

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