Accessing BCO-DMO data
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BCO-DMO ERDDAP
Accessing BCO-DMO data |
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| Dataset Title: | [Multiyear RNA-Seq of Neocalanus flemingeri stages CV and Adult Female] - Multiyear RNA-Seq of Neocalanus flemingeri stages CV and Adult Female from the R/V Tiglax and R/V Sikuliaq in the Northern Gulf of Alaska from 2015- 2022 (Collaborative Proposal: Optimizing Recruitment of Neocalanus copepods through Strategic Timing of Reproduction and Growth in the Gulf of Alaska) 
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| Institution: | BCO-DMO (Dataset ID: bcodmo_dataset_922330_v1) |
| Information: | Summary
| License
| FGDC
| ISO 19115
| Metadata
| Background
| Files
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Attributes {
s {
Experiment_Accession {
String long_name "Experiment_accession";
String units "unitless";
}
Experiment_Title {
String long_name "Experiment_title";
String units "unitless";
}
Organism_Name {
String long_name "Organism_name";
String units "unitless";
}
Station {
String long_name "Station";
String units "unitless";
}
latitude {
String _CoordinateAxisType "Lat";
Float32 actual_range 56.2321, 60.8243;
String axis "Y";
String ioos_category "Location";
String long_name "Latitude";
String standard_name "latitude";
String units "degrees_north";
}
longitude {
String _CoordinateAxisType "Lon";
Float32 actual_range -149.7195, -145.4238;
String axis "X";
String ioos_category "Location";
String long_name "Longitude";
String standard_name "longitude";
String units "degrees_east";
}
Depth_Range {
String long_name "Depth_range";
String units "meters (m)";
}
Date {
String long_name "Date";
String units "unitless";
}
Year {
Int32 actual_range 2015, 2022;
String long_name "Year";
String units "unitless";
}
Month {
Int32 actual_range 4, 9;
String long_name "Month";
String units "unitless";
}
Day {
Int32 actual_range 1, 30;
String long_name "Day";
String units "unitless";
}
Life_Stage {
String long_name "Life_stage";
String units "unitless";
}
Sex {
String long_name "Sex";
String units "unitless";
}
BioProject {
String long_name "Bioproject";
String units "unitless";
}
BioSample {
String long_name "Biosample";
String units "unitless";
}
Sample_Accession {
String long_name "Sample_accession";
String units "unitless";
}
SRA_Run_Accession {
String long_name "Sra_run_accession";
String units "unitless";
}
Study_Accession {
String long_name "Study_accession";
String units "unitless";
}
Study_Title {
String long_name "Study_title";
String units "unitless";
}
}
NC_GLOBAL {
String cdm_data_type "Other";
String Conventions "COARDS, CF-1.6, ACDD-1.3";
String creator_email "info@bco-dmo.org";
String creator_name "BCO-DMO";
String creator_url "https://www.bco-dmo.org/";
String doi "10.26008/1912/bco-dmo.922330.1";
Float64 Easternmost_Easting -145.4238;
Float64 geospatial_lat_max 60.8243;
Float64 geospatial_lat_min 56.2321;
String geospatial_lat_units "degrees_north";
Float64 geospatial_lon_max -145.4238;
Float64 geospatial_lon_min -149.7195;
String geospatial_lon_units "degrees_east";
String history
"2024-12-21T16:11:22Z (local files)
2024-12-21T16:11:22Z https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_922330_v1.html";
String infoUrl "https://www.bco-dmo.org/dataset/922330";
String institution "BCO-DMO";
String license
"The data may be used and redistributed for free but is not intended
for legal use, since it may contain inaccuracies. Neither the data
Contributor, ERD, NOAA, nor the United States Government, nor any
of their employees or contractors, makes any warranty, express or
implied, including warranties of merchantability and fitness for a
particular purpose, or assumes any legal liability for the accuracy,
completeness, or usefulness, of this information.";
Float64 Northernmost_Northing 60.8243;
String sourceUrl "(local files)";
Float64 Southernmost_Northing 56.2321;
String summary "High-throughput sequencing study of field-collected Neocalanus flemingeri pre-adults (stage CV) and adult females between 2015 and 2022. Dataset includes information and accession numbers of the raw sequence reads. Zooplankton collections were made in the northern Gulf of Alaska in collaboration with the Seward Long-term Monitoring Program and the northern Gulf of Alaska Long-term Ecological Research Program (LTER). Pre-adults were collected during the spring from multiple stations, sorted from net collections and immediately preserved. Adult females were collected mostly from Prince William Sound, but also on one occasion from the Gulf of Alaska. Adult females were collected from depth during diapause and preserved upon net retrieval. In addition, time series data were generated in three different years to characterize the post-diapause period through the spawning phase. The purpose of the data collection is to generate gene expression profiles during different years and seasons to evaluate developmental stage and physiological state.";
String title "[Multiyear RNA-Seq of Neocalanus flemingeri stages CV and Adult Female] - Multiyear RNA-Seq of Neocalanus flemingeri stages CV and Adult Female from the R/V Tiglax and R/V Sikuliaq in the Northern Gulf of Alaska from 2015-2022 (Collaborative Proposal: Optimizing Recruitment of Neocalanus copepods through Strategic Timing of Reproduction and Growth in the Gulf of Alaska)";
Float64 Westernmost_Easting -149.7195;
}
}
Data Access Protocol (DAP) and its
selection constraints.
The URL specifies what you want: the dataset, a description of the graph or the subset of the data, and the file type for the response.
Tabledap request URLs must be in the form
https://coastwatch.pfeg.noaa.gov/erddap/tabledap/datasetID.fileType{?query}
For example,
https://coastwatch.pfeg.noaa.gov/erddap/tabledap/pmelTaoDySst.htmlTable?longitude,latitude,time,station,wmo_platform_code,T_25&time>=2015-05-23T12:00:00Z&time<=2015-05-31T12:00:00Z
Thus, the query is often a comma-separated list of desired variable names,
followed by a collection of
constraints (e.g., variable<value),
each preceded by '&' (which is interpreted as "AND").
For details, see the tabledap Documentation.