Accessing BCO-DMO data
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BCO-DMO ERDDAP
Accessing BCO-DMO data |
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| Dataset Title: | [Microbial Cellular Abundance Epifluorescent Microscopy] - Microbial cellular abundance growth response through epifluorescent microscopy from the Neuse River Estuary, North Carolina USA from 2021-2022 (Bacteria as Biosensors of Carbon and Energy Flow in Marine Ecosystems: Quantitative Links Between Substrates, Transcripts, and Metabolism) 
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| Institution: | BCO-DMO (Dataset ID: bcodmo_dataset_925050_v1) |
| Information: | Summary
| License
| FGDC
| ISO 19115
| Metadata
| Background
| Files
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Attributes {
s {
Experiment_Name {
String long_name "Experiment_name";
String units "unitless";
}
latitude {
String _CoordinateAxisType "Lat";
Float32 actual_range 34.92567, 34.92567;
String axis "Y";
String ioos_category "Location";
String long_name "Latitude";
String standard_name "latitude";
String units "degrees_north";
}
longitude {
String _CoordinateAxisType "Lon";
Float32 actual_range -76.36507, -76.36507;
String axis "X";
String ioos_category "Location";
String long_name "Longitude";
String standard_name "longitude";
String units "degrees_east";
}
Date {
String long_name "Date";
String units "unitless";
}
Incubation_Day {
Int32 actual_range 0, 49;
String long_name "Incubation_day";
String units "days";
}
Treatment {
String long_name "Treatment";
String units "unitless";
}
Tank_ID {
Int32 actual_range 1, 2;
String long_name "Tank_id";
String units "unitless";
}
Method {
String long_name "Method";
String units "unitless";
}
Stain {
String long_name "Stain";
String units "unitless";
}
Excitation {
Int32 actual_range 395, 620;
String long_name "Excitation";
String units "nanometers (nm)";
}
Magnification {
Int32 actual_range 60, 102;
String long_name "Magnification";
String units "unitless";
}
Size_Fraction {
String long_name "Size_fraction";
String units "micrometers (um)";
}
cells_per_L_avg {
Float32 actual_range -7777.0, 8.6340536e+9;
String long_name "Cells_per_l_avg";
String units "cells L-1";
}
cells_per_L_sd {
Float32 actual_range -9999.0, 2.9039401e+9;
String long_name "Cells_per_l_sd";
String units "cells L-1";
}
ratio_620_tot {
Float32 actual_range -9999.0, 0.374;
String long_name "Ratio_620_tot";
String units "unitless";
}
ratio_err {
Float32 actual_range -9999.0, 0.343;
String long_name "Ratio_err";
String units "unitless";
}
}
NC_GLOBAL {
String cdm_data_type "Other";
String Conventions "COARDS, CF-1.6, ACDD-1.3";
String creator_email "info@bco-dmo.org";
String creator_name "BCO-DMO";
String creator_url "https://www.bco-dmo.org/";
String doi "10.26008/1912/bco-dmo.925050.1";
Float64 Easternmost_Easting -76.36507;
Float64 geospatial_lat_max 34.92567;
Float64 geospatial_lat_min 34.92567;
String geospatial_lat_units "degrees_north";
Float64 geospatial_lon_max -76.36507;
Float64 geospatial_lon_min -76.36507;
String geospatial_lon_units "degrees_east";
String history
"2024-11-23T17:30:11Z (local files)
2024-11-23T17:30:11Z https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_925050_v1.html";
String infoUrl "https://www.bco-dmo.org/dataset/925050";
String institution "BCO-DMO";
String license
"The data may be used and redistributed for free but is not intended
for legal use, since it may contain inaccuracies. Neither the data
Contributor, ERD, NOAA, nor the United States Government, nor any
of their employees or contractors, makes any warranty, express or
implied, including warranties of merchantability and fitness for a
particular purpose, or assumes any legal liability for the accuracy,
completeness, or usefulness, of this information.";
Float64 Northernmost_Northing 34.92567;
String sourceUrl "(local files)";
Float64 Southernmost_Northing 34.92567;
String summary "Microbial cellular abundance was enumerated for two microcosm incubation experiments to track the growth response of the microbial community. This dataset targets bacterial and phytoplankton abundance through epiflorescent microscopy. Sample water originated from the West Bay of the Neuse River Estuary, North Carolina USA in 2021 and 2022. The microcosms were 60-L, conducted in biological duplicates under three light treatment incubations: 12 h light-dark cycle of photosynthetically active radiation (PAR), 12 h light-dark cycle of UV-B radiation, or darkness. Unfiltered sample water was stained with SYBR Green I (Fall 2021 experiment) or DAPI (Spring 2022 experiment) for enumeration at 60x for bacterial and cyanobacterial abundance. Autofluorescence from excitation at 620 nm and 60x was used to enumerate small phytoplankton and cyanobacteria. This dataset highlights patterns in microbial growth across treatments over the course of the incubation and is used to generate cell-specific, normalized rates for associated datasets in the project.";
String title "[Microbial Cellular Abundance Epifluorescent Microscopy] - Microbial cellular abundance growth response through epifluorescent microscopy from the Neuse River Estuary, North Carolina USA from 2021-2022 (Bacteria as Biosensors of Carbon and Energy Flow in Marine Ecosystems: Quantitative Links Between Substrates, Transcripts, and Metabolism)";
Float64 Westernmost_Easting -76.36507;
}
}
Data Access Protocol (DAP) and its
selection constraints.
The URL specifies what you want: the dataset, a description of the graph or the subset of the data, and the file type for the response.
Tabledap request URLs must be in the form
https://coastwatch.pfeg.noaa.gov/erddap/tabledap/datasetID.fileType{?query}
For example,
https://coastwatch.pfeg.noaa.gov/erddap/tabledap/pmelTaoDySst.htmlTable?longitude,latitude,time,station,wmo_platform_code,T_25&time>=2015-05-23T12:00:00Z&time<=2015-05-31T12:00:00Z
Thus, the query is often a comma-separated list of desired variable names,
followed by a collection of
constraints (e.g., variable<value),
each preceded by '&' (which is interpreted as "AND").
For details, see the tabledap Documentation.