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Dataset Title:	[Synechococcus Batch Culture Sampling Data] - Synechococcus batch culture data (cell quotas and ratios (C,N,P), size, and diameter) from laboratory experiments in 2021 to 2022 with related isolates cultured across a range of temperatures (16-25C) (Collaborative Research: The stoichiometric trait distribution of the marine microbiome)
Institution:	BCO-DMO   (Dataset ID: bcodmo_dataset_926311_v1)
Information:	Summary | License | Metadata | Background | Files | Make a graph

 

Variable	Optional Constraint #1		Optional Constraint #2		Minimum	Maximum
Rep (unitless)	!= =~ <= >= = < >		!= =~ <= >= = < >		"1"	"3"
Temp (degrees Celsius (degC))	!= =~ <= >= = < >		!= =~ <= >= = < >		16	25
Strain (unitless)	!= =~ <= >= = < >		!= =~ <= >= = < >		"BL107"	"ROS8604"
Clade (unitless)	!= =~ <= >= = < >		!= =~ <= >= = < >		"I"	"IV"
GR (Growth rate per day (d-1))	!= =~ <= >= = < >		!= =~ <= >= = < >		0.03442962	0.5025793
QN (femtomoles (fmol))	!= =~ <= >= = < >		!= =~ <= >= = < >		0.7108176	6.905584
QP (femtomoles (fmol))	!= =~ <= >= = < >		!= =~ <= >= = < >		0.04144923	0.4745373
QC (femtomoles (fmol))	!= =~ <= >= = < >		!= =~ <= >= = < >		2.946481	43.29555
FSCH (unitless)	!= =~ <= >= = < >		!= =~ <= >= = < >		4638.5	105680.0
CN (unitless)	!= =~ <= >= = < >		!= =~ <= >= = < >		4.1452	11.18998
NP (unitless)	!= =~ <= >= = < >		!= =~ <= >= = < >		6.421976	22.63979
CP (unitless)	!= =~ <= >= = < >		!= =~ <= >= = < >		52.12025	155.5344
Cell_Diameter_um (micrometers (um))	!= =~ <= >= = < >		!= =~ <= >= = < >		0.638	1.298
Grams_N (grams (g))	!= =~ <= >= = < >		!= =~ <= >= = < >		9.96E-15	9.67E-14
Grams_P (grams (g))	!= =~ <= >= = < >		!= =~ <= >= = < >		1.28E-15	1.47E-14
Grams_C (grams (g))	!= =~ <= >= = < >		!= =~ <= >= = < >		3.54E-14	5.2E-13
isolation_sample_date (unitless)	!= =~ <= >= = < >		!= =~ <= >= = < >		"1986-11-24"	"2001-03-15"
isolation_lat (degrees_north)	!= =~ <= >= = < >		!= =~ <= >= = < >		31.91	48.72
longitude (Isolation_lon, degrees_east)	!= =~ <= >= = < >		!= =~ <= >= = < >		-124.17	3.55
depth (Isolation_depth, m)	!= =~ <= >= = < >		!= =~ <= >= = < >		0	1800
isolation_location (unitless)	!= =~ <= >= = < >		!= =~ <= >= = < >		"Atlantic Ocean"	"Pacific Ocean"
isolation_site (unitless)	!= =~ <= >= = < >		!= =~ <= >= = < >		"Balearic Sea"	"California current"
isolation_ecosystem (unitless)	!= =~ <= >= = < >		!= =~ <= >= = < >		"coastal"	"pelagic"
RCC_Number (unitless)	!= =~ <= >= = < >		!= =~ <= >= = < >		"RCC1086"	"RCC515"
RCC_Link (unitless)	!= =~ <= >= = < >		!= =~ <= >= = < >		"https://roscoff-cu..."	"https://roscoff-cu..."

 

Server-side Functions

distinct()

orderBy orderByDescending orderByClosest orderByCount orderByLimit orderByMax orderByMin orderByMinMax orderByMean orderBySum (" Rep Temp Strain Clade GR QN QP QC FSCH CN NP CP Cell_Diameter_um Grams_N Grams_P Grams_C isolation_sample_date isolation_lat longitude depth isolation_location isolation_site isolation_ecosystem RCC_Number RCC_Link Rep Temp Strain Clade GR QN QP QC FSCH CN NP CP Cell_Diameter_um Grams_N Grams_P Grams_C isolation_sample_date isolation_lat longitude depth isolation_location isolation_site isolation_ecosystem RCC_Number RCC_Link Rep Temp Strain Clade GR QN QP QC FSCH CN NP CP Cell_Diameter_um Grams_N Grams_P Grams_C isolation_sample_date isolation_lat longitude depth isolation_location isolation_site isolation_ecosystem RCC_Number RCC_Link Rep Temp Strain Clade GR QN QP QC FSCH CN NP CP Cell_Diameter_um Grams_N Grams_P Grams_C isolation_sample_date isolation_lat longitude depth isolation_location isolation_site isolation_ecosystem RCC_Number RCC_Link Rep Temp Strain Clade GR QN QP QC FSCH CN NP CP Cell_Diameter_um Grams_N Grams_P Grams_C isolation_sample_date isolation_lat longitude depth isolation_location isolation_site isolation_ecosystem RCC_Number RCC_Link ")

File type: (more information) .asc - View OPeNDAP-style ISO-8859-1 comma-separated text. .csv - Download a ISO-8859-1 comma-separated text table (line 1: names; line 2: units; ISO 8601 times). .csvp - Download a ISO-8859-1 .csv file with line 1: name (units). Times are ISO 8601 strings. .csv0 - Download a ISO-8859-1 .csv file without column names or units. Times are ISO 8601 strings. .dataTable - A JSON file formatted for use with the Google Visualization client library (Google Charts). .das - View the dataset's metadata via an ISO-8859-1 OPeNDAP Dataset Attribute Structure (DAS). .dds - View the dataset's structure via an ISO-8859-1 OPeNDAP Dataset Descriptor Structure (DDS). .dods - OPeNDAP clients use this to download the data in the DODS binary format. .esriCsv - Download a ISO_8859_1 .csv file for ESRI's ArcGIS 9.x and below (separate date and time columns). .fgdc - View the dataset's UTF-8 FGDC .xml metadata. .geoJson - Download longitude,latitude,otherColumns data as a UTF-8 GeoJSON .json file. .graph - View a Make A Graph web page. .help - View a web page with a description of tabledap. .html - View an OPeNDAP-style HTML Data Access Form. .htmlTable - View a UTF-8 .html web page with the data in a table. Times are ISO 8601 strings. .iso19115 - View the dataset's ISO 19115-2/19139 UTF-8 .xml metadata. .itx - Download an ISO-8859-1 Igor Text File. Each response column becomes a wave. .json - View a table-like UTF-8 JSON file (missing value = 'null'; times are ISO 8601 strings). .jsonlCSV1 - View a UTF-8 JSON Lines CSV file with column names on line 1 (mv = 'null'; times are ISO 8601 strings). .jsonlCSV - View a UTF-8 JSON Lines CSV file without column names (mv = 'null'; times are ISO 8601 strings). .jsonlKVP - View a UTF-8 JSON Lines file with Key:Value pairs (missing value = 'null'; times are ISO 8601 strings). .mat - Download a MATLAB binary file. .nc - Download a flat, table-like, NetCDF-3 binary file with COARDS/CF/ACDD metadata. .ncHeader - View the UTF-8 header (the metadata) for the NetCDF-3 .nc file. .ncCF - Download a NetCDF-3 CF Discrete Sampling Geometries file (Contiguous Ragged Array). .ncCFHeader - View the UTF-8 header (the metadata) for the .ncCF file. .ncCFMA - Download a NetCDF-3 CF Discrete Sampling Geometries file (Multidimensional Array). .ncCFMAHeader - View the UTF-8 header (the metadata) for the .ncCFMA file. .nccsv - Download a NetCDF-3-like 7-bit ASCII NCCSV .csv file with COARDS/CF/ACDD metadata. .nccsvMetadata - View the dataset's metadata as the top half of a 7-bit ASCII NCCSV .csv file. .ncoJson - Download a UTF-8 NCO lvl=2 JSON file with COARDS/CF/ACDD metadata. .odvTxt - Download longitude,latitude,time,otherColumns as an ISO-8859-1 ODV Generic Spreadsheet File (.txt). .subset - View an HTML form which uses faceted search to simplify picking subsets of the data. .tsv - Download a ISO-8859-1 tab-separated text table (line 1: names; line 2: units; ISO 8601 times). .tsvp - Download a ISO-8859-1 .tsv file with line 1: name (units). Times are ISO 8601 strings. .tsv0 - Download a ISO-8859-1 .tsv file without column names or units. Times are ISO 8601 strings. .wav - Download a .wav audio file. All columns must be numeric and of the same type. .xhtml - View a UTF-8 XHTML (XML) file with the data in a table. Times are ISO 8601 strings. .kml - View a .kml file, suitable for Google Earth. .smallPdf - View a small .pdf image file with a graph or map. .pdf - View a standard, medium-sized .pdf image file with a graph or map. .largePdf - View a large .pdf image file with a graph or map. .smallPng - View a small .png image file with a graph or map. .png - View a standard, medium-sized .png image file with a graph or map. .largePng - View a large .png image file with a graph or map. .transparentPng - View a .png image file (just the data, without axes, landmask, or legend).

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The Dataset Attribute Structure (.das) for this Dataset

Attributes {
 s {
  Rep {
    String long_name "Rep";
    String units "unitless";
  }
  Temp {
    Int32 actual_range 16, 25;
    String long_name "Temp";
    String units "degrees Celsius (degC)";
  }
  Strain {
    String long_name "Strain";
    String units "unitless";
  }
  Clade {
    String long_name "Clade";
    String units "unitless";
  }
  GR {
    Float32 actual_range 0.03442962, 0.5025793;
    String long_name "Gr";
    String units "Growth rate per day (d-1)";
  }
  QN {
    Float32 actual_range 0.7108176, 6.905584;
    String long_name "Qn";
    String units "femtomoles (fmol)";
  }
  QP {
    Float32 actual_range 0.04144923, 0.4745373;
    String long_name "Qp";
    String units "femtomoles (fmol)";
  }
  QC {
    Float32 actual_range 2.946481, 43.29555;
    String long_name "Qc";
    String units "femtomoles (fmol)";
  }
  FSCH {
    Float32 actual_range 4638.5, 105680.0;
    String long_name "Fsch";
    String units "unitless";
  }
  CN {
    Float32 actual_range 4.1452, 11.18998;
    String long_name "Cn";
    String units "unitless";
  }
  NP {
    Float32 actual_range 6.421976, 22.63979;
    String long_name "Np";
    String units "unitless";
  }
  CP {
    Float32 actual_range 52.12025, 155.5344;
    String long_name "Cp";
    String units "unitless";
  }
  Cell_Diameter_um {
    Float32 actual_range 0.638, 1.298;
    String long_name "Cell_diameter_um";
    String units "micrometers (um)";
  }
  Grams_N {
    Float32 actual_range 9.96e-15, 9.67e-14;
    String long_name "Grams_n";
    String units "grams (g)";
  }
  Grams_P {
    Float32 actual_range 1.28e-15, 1.47e-14;
    String long_name "Grams_p";
    String units "grams (g)";
  }
  Grams_C {
    Float32 actual_range 3.54e-14, 5.2e-13;
    String long_name "Grams_c";
    String units "grams (g)";
  }
  isolation_sample_date {
    String long_name "Isolation_sample_date";
    String units "unitless";
  }
  isolation_lat {
    Float32 actual_range 31.91, 48.72;
    String long_name "Isolation_lat";
    String units "degrees_north";
  }
  longitude {
    String _CoordinateAxisType "Lon";
    Float32 actual_range -124.17, 3.55;
    String axis "X";
    String ioos_category "Location";
    String long_name "Isolation_lon";
    String standard_name "longitude";
    String units "degrees_east";
  }
  depth {
    String _CoordinateAxisType "Height";
    String _CoordinateZisPositive "down";
    Int32 actual_range 0, 1800;
    String axis "Z";
    String ioos_category "Location";
    String long_name "Isolation_depth";
    String positive "down";
    String standard_name "depth";
    String units "m";
  }
  isolation_location {
    String long_name "Isolation_location";
    String units "unitless";
  }
  isolation_site {
    String long_name "Isolation_site";
    String units "unitless";
  }
  isolation_ecosystem {
    String long_name "Isolation_ecosystem";
    String units "unitless";
  }
  RCC_Number {
    String long_name "Rcc_number";
    String units "unitless";
  }
  RCC_Link {
    String long_name "Rcc_link";
    String units "unitless";
  }
 }
  NC_GLOBAL {
    String cdm_data_type "Other";
    String Conventions "COARDS, CF-1.6, ACDD-1.3";
    String creator_email "info@bco-dmo.org";
    String creator_name "BCO-DMO";
    String creator_url "https://www.bco-dmo.org/";
    String doi "10.26008/1912/bco-dmo.926311.1";
    Float64 Easternmost_Easting 3.55;
    Float64 geospatial_lon_max 3.55;
    Float64 geospatial_lon_min -124.17;
    String geospatial_lon_units "degrees_east";
    Float64 geospatial_vertical_max 1800.0;
    Float64 geospatial_vertical_min 0.0;
    String geospatial_vertical_positive "down";
    String geospatial_vertical_units "m";
    String history 
"2024-12-22T01:04:52Z (local files)
2024-12-22T01:04:52Z https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_926311_v1.html";
    String infoUrl "https://www.bco-dmo.org/dataset/926311";
    String institution "BCO-DMO";
    String license 
"The data may be used and redistributed for free but is not intended
for legal use, since it may contain inaccuracies. Neither the data
Contributor, ERD, NOAA, nor the United States Government, nor any
of their employees or contractors, makes any warranty, express or
implied, including warranties of merchantability and fitness for a
particular purpose, or assumes any legal liability for the accuracy,
completeness, or usefulness, of this information.";
    String sourceUrl "(local files)";
    String summary 
"Diverse phytoplankton modulate the coupling between the ocean carbon and nutrient cycles through life-history traits such as cell size, elemental quotas, and ratios. Biodiversity is mostly considered at broad functional levels, but major phytoplankton lineages are themselves highly diverse. As an example, Synechococcus is found in nearly all ocean regions, and we demonstrate contains extensive intraspecific variation. Here, we grew four closely related Synechococcus isolates in serially transferred cultures across a range of temperatures (16-25°C) to quantify for the relative role of intraspecific trait variation vs. environmental change. We collected data at the time of sampling, after cultures grew for seven doublings or one month.   Experiments were conducted from September of 2021 to early 2022.

This dataset includes cell quotas (fmol) for carbon (QC), nitrogen (QN), and phosphorus (QP). It also includes N:P, C:N, and C:P stoichiometry, cell size, and cell diameter (µm) for each Synechococcus strain and clade under each thermal condition.";
    String title "[Synechococcus Batch Culture Sampling Data] - Synechococcus batch culture data (cell quotas and ratios (C,N,P), size, and diameter) from laboratory experiments in 2021 to 2022 with related isolates cultured across a range of temperatures (16-25C) (Collaborative Research: The stoichiometric trait distribution of the marine microbiome)";
    Float64 Westernmost_Easting -124.17;
  }
}

 

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tabledap lets you request a data subset, a graph, or a map from a tabular dataset (for example, buoy data), via a specially formed URL. tabledap uses the OPeNDAP Data Access Protocol (DAP) and its selection constraints.

The URL specifies what you want: the dataset, a description of the graph or the subset of the data, and the file type for the response.

• (easy) You can get data by using the dataset's Data Access Form or Subset form. They make the URL for you.
• (easy) You can make a graph or map by using the dataset's Make A Graph form. It makes the URL for you.
• (not hard) You can bypass the forms and get the data or make a graph or map by generating the URL by hand or with a computer program or script.

Tabledap request URLs must be in the form
https://coastwatch.pfeg.noaa.gov/erddap/tabledap/datasetID.fileType{?query}
For example,
https://coastwatch.pfeg.noaa.gov/erddap/tabledap/pmelTaoDySst.htmlTable?longitude,latitude,time,station,wmo_platform_code,T_25&time>=2015-05-23T12:00:00Z&time<=2015-05-31T12:00:00Z
Thus, the query is often a comma-separated list of desired variable names, followed by a collection of constraints (e.g., variable<value), each preceded by '&' (which is interpreted as "AND").

For details, see the tabledap Documentation.

 

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