BCO-DMO ERDDAP
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Species Strain gene_callers_id ac_mean_abund glc_mean_abund late_mean_abund early_mean_abund SPO_ID_ACCESSION KOfam_ACCESSION KEGG_Module COG20_FUNCTION Uniprot_accession
unitless unitless unitless unitless unitless unitless unitless unitless unitless unitless unitless unitless
Ruegeria pomeroyi DSS-3 1 6.44536E-5 9.67093E-5 8.27006E-5 7.21055E-5 SPO0001 K03495 nan tRNA U34 5-carboxymethylaminomethyl modifying enzyme MnmG/GidA (MnmG) (PDB:2ZXH)
Ruegeria pomeroyi DSS-3 2 2.69205E-6 3.21742E-5 1.88444E-5 1.07682E-5 SPO0002 K03501 nan 16S rRNA G527 N7-methylase RsmG (former glucose-inhibited division protein B) (RsmG) (PDB:1XDZ) (PUBMED:15375115;22031445)
Ruegeria pomeroyi DSS-3 3 3.6612E-4 1.95196E-4 3.21554E-4 2.6122E-4 SPO0003 K03496 nan ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ (ParA) (PDB:6NOO)
Ruegeria pomeroyi DSS-3 4 0.002235678 0.002168904 0.002509649 0.001826886 SPO0004 K03497 nan Chromosome segregation protein Spo0J, contains ParB-like nuclease domain (Spo0J) (PDB:1R71)
Ruegeria pomeroyi DSS-3 5 SPO0005 K09790 nan Uncharacterized membrane protein YbaN, DUF454 family (YbaN)
Ruegeria pomeroyi DSS-3 6 5.70575E-6 3.98498E-6 1.42644E-6 1.61663E-5 SPO0006 K02495 Heme biosynthesis, plants and bacteria, glutamate => heme Coproporphyrinogen-III oxidase HemN  (oxygen-independent) or related Fe-S oxidoreductase (HemN) (PDB:1OLT)
Ruegeria pomeroyi DSS-3 7 3.36507E-5 1.11766E-5 4.48676E-5 6.99934E-5 SPO0007 K01519 nan Inosine/xanthosine triphosphate pyrophosphatase, all-alpha NTP-PPase family (RdgB) (PDB:1B78)
Ruegeria pomeroyi DSS-3 8 7.50776E-4 8.65427E-4 6.27964E-4 0.001091406 SPO0008 K00989 nan Ribonuclease PH (Rph) (PDB:1UDO)
Ruegeria pomeroyi DSS-3 9 1.12473E-4 5.91028E-4 1.77888E-4 2.1357E-4 SPO0009 K03705 nan Transcriptional regulator of heat shock response (HrcA) (PDB:1STZ)
Ruegeria pomeroyi DSS-3 10 0.001916253 0.003647626 0.002734147 0.002754705 SPO0010 K03687 nan Molecular chaperone GrpE (heat shock protein HSP-70) (GrpE) (PDB:1DKG)
Ruegeria pomeroyi DSS-3 11 2.04455E-4 1.59178E-4 3.90333E-4 3.64867E-4 SPO0011 K03555 nan DNA mismatch repair ATPase MutS (MutS) (PDB:1E3M)
Ruegeria pomeroyi DSS-3 12 0.001398541 0.003497389 0.001591717 0.001505915 SPO0012 K00029 CAM (Crassulacean acid metabolism), light Phosphotransacetylase (includes Pta, EutD and phosphobutyryltransferase) (Pta) (PDB:1QZT) (PUBMED:28754323)!!!Malic enzyme (SfcA) (PDB:1DO8)
Ruegeria pomeroyi DSS-3 13 3.78744E-5 4.79199E-5 6.0599E-5 8.39548E-5 SPO0013 K00852 nan Sugar or nucleoside kinase, ribokinase family (RbsK) (PDB:2QCV)
Ruegeria pomeroyi DSS-3 14 SPO0014 K07304 nan Peptide methionine sulfoxide reductase MsrA (MsrA) (PDB:1FF3)
Ruegeria pomeroyi DSS-3 15 1.84426E-5 1.81635E-5 2.13688E-5 SPO0015 nan
Ruegeria pomeroyi DSS-3 16 SPO0016 nan Putative sterol carrier protein, contains SCP2 domain (SCP2)
Ruegeria pomeroyi DSS-3 17 SPO0017 nan Uncharacterized conserved protein, DUF1810 family (Mll0975) (PDB:2JEK) (PUBMED:17142896)
Ruegeria pomeroyi DSS-3 18 0.004990277 0.01022236 0.006220447 0.004533523 SPO0018 K01940 Arginine biosynthesis, ornithine => arginine Argininosuccinate synthase (ArgG) (PDB:1J1Z)
Ruegeria pomeroyi DSS-3 19 SPO0019 nan
Ruegeria pomeroyi DSS-3 20 8.74916E-6 1.5255E-5 2.24338E-5 1.48063E-5 SPO0020 K01754 Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine Threonine deaminase (IlvA) (PDB:3IAU)
Ruegeria pomeroyi DSS-3 21 SPO0021 K20976 nan HPt (histidine-containing phosphotransfer) domain (HPtr) (PDB:3IQT)
Ruegeria pomeroyi DSS-3 22 SPO0022 K07315 nan Phosphoserine phosphatase RsbU, regulator of sigma subunit (RsbU) (PDB:5UCG)
Ruegeria pomeroyi DSS-3 23 1.46448E-5 3.73591E-6 9.153E-6 3.29507E-5 SPO0023 K03574 nan 8-oxo-dGTP pyrophosphatase MutT and related house-cleaning NTP pyrophosphohydrolases, NUDIX family (MutT) (PDB:4V14)
Ruegeria pomeroyi DSS-3 24 2.05521E-4 8.58778E-4 2.07205E-4 2.47074E-4 SPO0024 K04083 nan Redox-regulated molecular chaperone, HSP33 family (HslO) (PDB:1HW7)
Ruegeria pomeroyi DSS-3 25 2.77363E-6 6.93408E-5 SPO0025 K17879 nan 8-oxo-dGTP pyrophosphatase MutT and related house-cleaning NTP pyrophosphohydrolases, NUDIX family (MutT) (PDB:4V14)
Ruegeria pomeroyi DSS-3 26 2.43126E-5 7.28579E-5 6.38802E-5 2.33592E-5 SPO0026 K00974 nan tRNA nucleotidyltransferase/poly(A) polymerase (PcnB) (PDB:3WFR)
Ruegeria pomeroyi DSS-3 27 2.4408E-5 3.5894E-6 3.5894E-6 SPO0027 K18893 nan ABC-type multidrug transport system, ATPase and permease component (MdlB) (PDB:2HYD)
Ruegeria pomeroyi DSS-3 28 SPO0028 nan ABC-type multidrug transport system, ATPase and permease component (MdlB) (PDB:2HYD)
Ruegeria pomeroyi DSS-3 29 4.74111E-5 3.30253E-6 1.27308E-5 3.24854E-5 SPO0029 K03215 nan tRNA/tmRNA/rRNA uracil-C5-methylase, TrmA/RlmC/RlmD family (TrmA) (PDB:1UWV)
Ruegeria pomeroyi DSS-3 30 9.15298E-6 7.66296E-5 SPO0030 K08714 nan Uncharacterized membrane protein
Ruegeria pomeroyi DSS-3 31 2.64235E-4 3.1929E-6 SPO0031 nan Murein L,D-transpeptidase YafK (YafK) (PDB:4XZZ)
Ruegeria pomeroyi DSS-3 32 SPO0033 K03566 nan DNA-binding transcriptional regulator, LysR family (LysR) (PDB:2FYI)
Ruegeria pomeroyi DSS-3 33 9.74536E-5 2.26105E-4 1.16944E-4 8.29309E-5 SPO0034 K21014 nan LPS sulfotransferase NodH (LpsS) (PDB:1TEX)
Ruegeria pomeroyi DSS-3 34 3.92972E-6 SPO0035 nan
Ruegeria pomeroyi DSS-3 35 1.61523E-6 4.76718E-6 1.61523E-6 2.69205E-5 SPO0036 nan Glycosyltransferase involved in cell wall bisynthesis (WcaA) (PDB:5MLZ)
Ruegeria pomeroyi DSS-3 36 1.57358E-5 SPO0037 nan Glycosyltransferase involved in cell wall bisynthesis (WcaA) (PDB:5MLZ)
Ruegeria pomeroyi DSS-3 37 1.49682E-4 5.39352E-5 4.67972E-5 1.58285E-4 SPO0038 K00979 CMP-KDO biosynthesis CMP-2-keto-3-deoxyoctulosonic acid synthetase (KdsB) (PDB:1VH1)
Ruegeria pomeroyi DSS-3 38 8.37239E-4 3.00432E-4 0.001299378 0.001358095 SPO0039 K01082 nan 3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase (CysQ)
Ruegeria pomeroyi DSS-3 39 SPO0040 nan ABC-type polysaccharide/teichoic acid/polyol phosphate export permease (TagG) (PDB:6JBH)
Ruegeria pomeroyi DSS-3 40 3.53853E-5 2.4321E-5 1.03797E-4 5.66165E-6 SPO0041 nan Uncharacterized membrane protein!!!Uncharacterized conserved protein YraI (YraI) (PDB:2E52)
Ruegeria pomeroyi DSS-3 41 2.77363E-6 2.77363E-6 1.10945E-5 SPO0042 K03919 nan Alkylated DNA repair dioxygenase AlkB (AlkB) (PDB:3KHC)
Ruegeria pomeroyi DSS-3 42 0.029771186 0.13704748 0.05858943 0.038108878 SPO0043 K04043 nan Molecular chaperone DnaK (HSP70) (DnaK) (PDB:3I33)
Ruegeria pomeroyi DSS-3 43 8.0503E-4 0.008413902 0.001371266 0.001040701 SPO0044 K03686 nan DnaJ-class molecular chaperone with C-terminal Zn finger domain (DnaJ) (PDB:1BQ0)
Ruegeria pomeroyi DSS-3 44 1.85116E-5 8.2274E-6 SPO0045 K00941 Thiamine biosynthesis, prokaryotes, AIR (+ DXP/tyrosine) => TMP/TPP Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase (ThiD) (PDB:1Y9X) (PUBMED:17351295)
Ruegeria pomeroyi DSS-3 45 SPO0046 K03153 Thiamine biosynthesis, prokaryotes, AIR (+ DXP/glycine) => TMP/TPP Glycine/D-amino acid oxidase (deaminating) (DadA) (PDB:3AWI)
Ruegeria pomeroyi DSS-3 46 SPO0046a K03154 Thiamine biosynthesis, prokaryotes, AIR (+ DXP/tyrosine) => TMP/TPP Sulfur carrier protein ThiS (thiamine biosynthesis) (ThiS) (PDB:1F0Z)
Ruegeria pomeroyi DSS-3 47 2.16212E-6 SPO0047 K03149 Thiamine biosynthesis, prokaryotes, AIR (+ DXP/tyrosine) => TMP/TPP Thiazole synthase ThiGH, ThiG subunit (thiamin biosynthesis) (ThiG) (PDB:1TYG)
Ruegeria pomeroyi DSS-3 48 2.77363E-6 6.10199E-6 2.77363E-6 SPO0048 K00788 Thiamine biosynthesis, prokaryotes, AIR (+ DXP/tyrosine) => TMP/TPP Thiamine monophosphate synthase (ThiE) (PDB:1G4T) (PUBMED:19060138)
Ruegeria pomeroyi DSS-3 49 SPO0049 K21029 nan Molybdopterin or thiamine biosynthesis adenylyltransferase (ThiF) (PDB:1ZUD) (PUBMED:32239579)
Ruegeria pomeroyi DSS-3 50 1.78563E-4 3.73543E-4 2.18508E-4 9.3646E-5 SPO0050 K15598 nan ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component (TauA) (PDB:2X26)
Ruegeria pomeroyi DSS-3 51 2.56626E-6 SPO0051 K03707 nan Aminopyrimidine aminohydrolase TenA (thiamine salvage pathway) (TenA) (PDB:2QCX) (PUBMED:17618314)
Ruegeria pomeroyi DSS-3 52 SPO0052 K15600 nan ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component (TauB)
Ruegeria pomeroyi DSS-3 53 SPO0053 K15599 nan ABC-type nitrate/sulfonate/bicarbonate transport system, permease component (TauC)
Ruegeria pomeroyi DSS-3 54 SPO0054 K03630 nan DNA repair protein RadC, contains a helix-hairpin-helix DNA-binding motif (RadC) (PDB:2QLC) (PUBMED:9695921)
Ruegeria pomeroyi DSS-3 55 2.17339E-4 5.19035E-4 3.69653E-4 2.31121E-4 SPO0055 K02040 nan ABC-type phosphate transport system, periplasmic component (PstS) (PDB:2Q9T)!!!Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins (OmpA) (PDB:1OAP)
Ruegeria pomeroyi DSS-3 56 SPO0056 nan
Ruegeria pomeroyi DSS-3 57 0.005180933 0.061469387 0.006332116 0.005371307 SPO0057 K03070 nan Preprotein translocase subunit SecA (ATPase, RNA helicase) (SecA) (PDB:2FSF)
Ruegeria pomeroyi DSS-3 58 0.001047619 0.002613004 0.003224768 0.001599782 SPO0058 K03769 nan Peptidyl-prolyl isomerase, parvulin family (SurA) (PDB:2ZR5)
Ruegeria pomeroyi DSS-3 59 0.001567448 0.005855679 0.002744548 0.001379229 SPO0059 K00620 Ornithine biosynthesis, glutamate => ornithine Glutamate N-acetyltransferase (ornithine transacetylase) (ArgJ) (PDB:1VRA)
Ruegeria pomeroyi DSS-3 60 1.66418E-5 2.36499E-5 1.66418E-5 2.26744E-4 SPO0060 K03574 nan ADP-ribose pyrophosphatase YjhB, NUDIX family (YjhB) (PDB:3GZ5)
Ruegeria pomeroyi DSS-3 61 0.004817647 0.026146285 0.007926372 0.005139481 SPO0061 K02519 nan Translation initiation factor IF-2, a GTPase (InfB) (PDB:5ME0)
Ruegeria pomeroyi DSS-3 62 1.65815E-4 2.07518E-4 2.52039E-4 1.31767E-4 SPO0062 K07742 nan Nucleoid-associated protein YlxR, Predicted RNA-binding, DUF448 family (YlxR) (PDB:1G2R) (PUBMED:11679764;31118925)
Ruegeria pomeroyi DSS-3 63 0.004820288 0.005240021 0.005968217 0.005150371 SPO0063 K02600 nan Transcription antitermination factor NusA, contains S1 and KH domains (NusA) (PDB:1HH2)
Ruegeria pomeroyi DSS-3 64 3.82841E-4 1.90242E-4 2.69309E-4 2.19143E-4 SPO0064 K09748 nan Ribosome maturation factor RimP (RimP) (PDB:1IB8)
Ruegeria pomeroyi DSS-3 65 SPO0065 nan ABC-type transport system, periplasmic component (DdpA) (PDB:3RQT)
Ruegeria pomeroyi DSS-3 66 1.12964E-4 9.82033E-5 1.56412E-4 1.88274E-4 SPO0066 K01259 nan 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase MenH and related esterases, alpha/beta hydrolase fold (MenH) (PDB:4MYS)
Ruegeria pomeroyi DSS-3 67 2.00406E-4 3.00181E-4 2.48754E-4 2.27348E-4 SPO0067 K00568 Ubiquinone biosynthesis, prokaryotes, chorismate (+ polyprenyl-PP) => ubiquinol 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase (UbiG) (PDB:1BHJ)
Ruegeria pomeroyi DSS-3 68 4.31592E-5 7.14685E-5 SPO0068 nan DNA-binding transcriptional regulator, MarR family (MarR) (PDB:1JGS)
Ruegeria pomeroyi DSS-3 69 1.05458E-4 1.45887E-5 1.14081E-4 6.56627E-5 SPO0069 K11206 nan Omega-amidase YafV/Nit2, hydrolyzes alpha-ketoglutaramate (Nit2) (PUBMED:28373563)
Ruegeria pomeroyi DSS-3 70 2.51518E-5 5.42794E-5 4.15077E-5 SPO0070 K03676 nan Glutaredoxin (GrxC) (PDB:1AAZ)
Ruegeria pomeroyi DSS-3 71 2.26933E-6 SPO0071 K02242 nan DNA utilization protein ComFC/GntX, contains phosphoribosyltransferase domain (ComFC) (PUBMED:28618091)
Ruegeria pomeroyi DSS-3 72 3.17215E-5 1.9826E-6 SPO0072 K18162 nan Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG (UbiE) (PDB:4OBW)
Ruegeria pomeroyi DSS-3 73 1.36051E-4 3.17466E-4 2.96435E-4 4.18659E-4 SPO0073 K01772 Heme biosynthesis, animals and fungi, glycine => heme Protoheme ferro-lyase (ferrochelatase) (HemH) (PDB:1AK1)
Ruegeria pomeroyi DSS-3 74 SPO0074 nan
Ruegeria pomeroyi DSS-3 75 8.09247E-4 8.26278E-4 0.001131801 9.54902E-4 SPO0075 nan Lipoprotein-anchoring transpeptidase ErfK/SrfK (ErfK) (PDB:4LZH)
Ruegeria pomeroyi DSS-3 76 2.95344E-4 4.12879E-4 9.31263E-4 4.43813E-4 SPO0076 nan Spore germination protein YkwD and related proteins with CAP (CSP/antigen 5/PR1) domain (YkwD) (PDB:1CFE) (PUBMED:31199835)
Ruegeria pomeroyi DSS-3 77 1.89003E-4 5.81168E-4 8.20203E-5 2.59137E-4 SPO0077 K02806 nan Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) (PtsN) (PDB:2OQ3)
Ruegeria pomeroyi DSS-3 78 0.020751327 0.005035481 0.011545483 0.001438046 SPO0078 K05808 nan Ribosome-associated translation inhibitor RaiA (RaiA) (PDB:1IMU)
Ruegeria pomeroyi DSS-3 79 6.64681E-4 0.001463698 3.55949E-4 8.68807E-4 SPO0079 K06861 nan ABC-type lipopolysaccharide export system, ATPase component (LptB) (PDB:5L75) (PUBMED:12029038)
Ruegeria pomeroyi DSS-3 80 1.0276E-4 5.56222E-5 5.39071E-5 5.39071E-5 SPO0080 K09774 nan Lipopolysaccharide export system protein LptA (LptA) (PDB:2R19)
Ruegeria pomeroyi DSS-3 81 4.34993E-5 1.18773E-4 6.1624E-5 3.26245E-5 SPO0081 K11719 nan Uncharacterized conserved protein
Ruegeria pomeroyi DSS-3 82 3.11259E-4 7.93259E-4 5.60549E-4 2.50144E-4 SPO0082 K06041 CMP-KDO biosynthesis CBS domain (CBS) (PDB:1B3O)!!!D-arabinose 5-phosphate isomerase GutQ (GutQ) (PDB:5UQI)
Ruegeria pomeroyi DSS-3 83 6.91858E-4 0.001670724 5.61742E-4 5.71613E-4 SPO0083 K03684 nan Ribonuclease D (Rnd) (PDB:5C0Y) (PUBMED:18821773)
Ruegeria pomeroyi DSS-3 84 4.53867E-6 1.09046E-4 7.94268E-6 9.07735E-6 SPO0084 K00130 Betaine biosynthesis, choline => betaine Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenase (AdhE) (PDB:1A4S)
Ruegeria pomeroyi DSS-3 85 SPO0085 nan
Ruegeria pomeroyi DSS-3 86 5.23028E-5 9.58883E-6 SPO0086 K07231 nan Imelysin-like iron-regulated protein IrpA, duplicated M75 peptidase-like domain (IrpA) (PUBMED:21799754)
Ruegeria pomeroyi DSS-3 87 2.50338E-5 SPO0087 nan
Ruegeria pomeroyi DSS-3 88 SPO0088 nan Uncharacterized conserved protein with two CxxC motifs, DUF1111 family
Ruegeria pomeroyi DSS-3 89 SPO0089 K07338 nan Imelysin-like iron-regulated protein IrpA, duplicated M75 peptidase-like domain (IrpA2) (PUBMED:21799754)
Ruegeria pomeroyi DSS-3 90 SPO0090 K09947 nan Uncharacterized conserved protein, DUF1513 domain
Ruegeria pomeroyi DSS-3 91 1.82451E-5 5.37094E-6 1.64206E-5 1.03389E-5 SPO0091 K07146 nan tRNA U34 5'-hydroxylase TrhO, rhodanese family (TrhO) (PDB:4F67) (PUBMED:31253794)
Ruegeria pomeroyi DSS-3 92 1.34933E-6 3.37334E-6 5.39734E-6 SPO0092 K04046 nan Molecular chaperone DnaK (HSP70) (DnaK) (PDB:3I33)
Ruegeria pomeroyi DSS-3 93 4.48309E-5 5.19803E-5 3.9227E-5 5.32367E-5 SPO0093 K08281 nan Nicotinamidase-related amidase (PncA) (PDB:1ILW)
Ruegeria pomeroyi DSS-3 94 SPO0094 K20974 nan Signal transduction histidine kinase (BaeS) (PDB:1JOY)!!!CheY-like REC (receiver) domain, includes chemotaxis protein CheY  and sporulation regulator Spo0F (CheY) (PDB:6QRJ)!!!PAS domain (PAS) (PDB:2MWG)
Ruegeria pomeroyi DSS-3 95 2.58618E-4 7.22603E-4 2.66194E-4 2.13365E-4 SPO0095 K00763 nan Nicotinic acid phosphoribosyltransferase (PncB) (PDB:1VLP)
Ruegeria pomeroyi DSS-3 96 SPO0096 K15270 nan Membrane protein RarD, contains two EamA domains, drug/metabolite transporter family (RarD) (PUBMED:26335199)
Ruegeria pomeroyi DSS-3 97 0.001064816 0.001346526 8.82704E-4 0.001102906 SPO0097 nan Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenase (AdhE) (PDB:1A4S)
Ruegeria pomeroyi DSS-3 98 7.69057E-5 1.7801E-5 6.67548E-5 6.09052E-5 SPO0098 K02032 nan ABC-type microcin C transport system, duplicated ATPase component YejF (YejF) (PUBMED:17873039)
Ruegeria pomeroyi DSS-3 99 SPO0099 K02034 nan ABC-type dipeptide/oligopeptide/nickel transport system, permease component (DppC)
Ruegeria pomeroyi DSS-3 100 SPO0100 K02033 nan ABC-type dipeptide/oligopeptide/nickel transport system, permease component (DppB)
Ruegeria pomeroyi DSS-3 101 0.002851847 0.003624949 0.004269912 0.002487022 SPO0101 K02035 nan ABC-type transport system, periplasmic component (DdpA) (PDB:3RQT)
Ruegeria pomeroyi DSS-3 102 0.001072769 4.33661E-4 5.13092E-4 4.3042E-4 SPO0102 K00606 Pantothenate biosynthesis, valine/L-aspartate => pantothenate Ketopantoate hydroxymethyltransferase (PanB) (PDB:3VAV)
Ruegeria pomeroyi DSS-3 103 3.56485E-4 6.88586E-4 6.55161E-5 1.88198E-4 SPO0103 K01918 Pantothenate biosynthesis, valine/L-aspartate => pantothenate Panthothenate synthetase (PanC) (PDB:1DIN) (PUBMED:17968677)
Ruegeria pomeroyi DSS-3 104 5.65364E-4 6.5198E-4 3.5198E-4 4.18209E-4 SPO0104 K00864 nan Glycerol kinase (GlpK) (PDB:2ZF5)
Ruegeria pomeroyi DSS-3 105 1.18617E-4 3.58829E-4 7.1651E-5 3.75731E-5 SPO0105 K20940 Pyocyanine biosynthesis, chorismate => pyocyanine 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases (UbiH) (PDB:1BF3)
Ruegeria pomeroyi DSS-3 106 2.02287E-5 8.2234E-5 1.49451E-4 SPO0106 K09861 nan DNA-binding protein YaaA associated with the oxidative stress response (YaaA) (PDB:5CAJ) (PUBMED:21378183;32796037)
Ruegeria pomeroyi DSS-3 107 1.37229E-4 1.02449E-5 1.86025E-5 SPO0107 K03654 nan Superfamily II DNA helicase RecQ (RecQ) (PDB:1OYW)
Ruegeria pomeroyi DSS-3 108 SPO0108 K07497 nan Transposase InsO and inactivated derivatives (Tra5)
Ruegeria pomeroyi DSS-3 109 1.31803E-5 1.31803E-5 SPO0109 K01992 nan ABC-type multidrug transport system, permease component (YadH)
Ruegeria pomeroyi DSS-3 110 3.53821E-5 6.04823E-7 1.39109E-5 SPO0110 K13926 nan ABC-type multidrug transport system, permease component (YadH)!!!ABC-type multidrug transport system, ATPase component (CcmA) (PDB:5DO7)
Ruegeria pomeroyi DSS-3 111 2.08657E-4 8.05199E-5 2.4046E-4 1.65995E-4 SPO0111 K01993 nan Multidrug resistance efflux pump EmrA (EmrA) (PDB:4TKO)
Ruegeria pomeroyi DSS-3 112 1.29456E-4 6.1219E-5 SPO0112 K03821 nan Poly-beta-hydroxybutyrate synthase (PhaC) (PDB:5XAV)
Ruegeria pomeroyi DSS-3 113 4.43235E-5 2.16212E-6 1.08106E-5 SPO0113 K00208 Fatty acid biosynthesis, elongation Enoyl-[acyl-carrier-protein] reductase FabI (FabI) (PDB:1C14)
Ruegeria pomeroyi DSS-3 114 SPO0114 nan
Ruegeria pomeroyi DSS-3 115 3.52706E-4 1.44635E-5 6.35185E-5 1.80692E-4 SPO0115 K00625 Ethylmalonyl pathway Phosphotransacetylase (includes Pta, EutD and phosphobutyryltransferase) (Pta) (PDB:1QZT) (PUBMED:28754323)!!!Acyl-CoA dehydratase PaaZ (MaoC) (PDB:5ZY8)
Ruegeria pomeroyi DSS-3 116 3.48464E-6 SPO0116 K00925 Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate Acetate kinase (AckA) (PDB:3SK3)
Ruegeria pomeroyi DSS-3 117 SPO0118 nan
Ruegeria pomeroyi DSS-3 118 3.2885E-6 SPO0119 K03719 nan DNA-binding transcriptional regulator, Lrp family (Lrp) (PDB:1I1G)
Ruegeria pomeroyi DSS-3 119 SPO0120 K11939 nan Threonine/homoserine efflux transporter RhtA (RhtA)
Ruegeria pomeroyi DSS-3 120 2.31233E-5 9.76318E-5 5.20275E-5 SPO0122 K02221 nan Cytochrome b6 maturation protein CCB3/Ycf19 and related maturases, YggT family (Ycf19)
Ruegeria pomeroyi DSS-3 121 3.50797E-5 3.10291E-5 4.07247E-5 4.59665E-5 SPO0123 K06902 nan MFS-type transporter involved in bile tolerance, Atg22 family (BtlA) (PUBMED:12583894)
Ruegeria pomeroyi DSS-3 122 0.001383256 9.40072E-4 0.001979918 0.001769368 SPO0124 K07261 nan Murein endopeptidase MepA (D-alanyl-D-alanine-endopeptidase) (MepA) (PDB:1TZP)
Ruegeria pomeroyi DSS-3 123 6.91144E-5 7.58385E-5 3.54912E-5 3.11326E-5 SPO0125 nan Uncharacterized conserved protein, contains a phytase-like domain
Ruegeria pomeroyi DSS-3 124 SPO0126 K09125 nan Queuosine precursor transporter YhhQ, DUF165 family (YhhQ) (PUBMED:31481610)
Ruegeria pomeroyi DSS-3 125 SPO0127 K15034 nan Protein chain release factor PrfB (PrfB) (PDB:1GQE)
Ruegeria pomeroyi DSS-3 126 2.64744E-4 7.64485E-5 4.17901E-4 2.66202E-4 SPO0128 K00059 Fatty acid biosynthesis, elongation NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family (FabG) (PDB:6L1H)
Ruegeria pomeroyi DSS-3 127 6.55736E-6 6.03776E-5 2.0765E-5 3.11474E-5 SPO0129 K01266 nan L-aminopeptidase/D-esterase (DmpA) (PDB:1B65)
Ruegeria pomeroyi DSS-3 128 3.40732E-4 5.23676E-4 0.001421719 3.5543E-4 SPO0130 K08738 nan Cytochrome c2 (Cyc7) (PDB:1YEA)
Ruegeria pomeroyi DSS-3 129 7.62748E-5 7.62748E-5 6.20369E-5 SPO0131 K01823 C5 isoprenoid biosynthesis, mevalonate pathway Isopentenyldiphosphate isomerase (Idi) (PDB:1NFS)
Ruegeria pomeroyi DSS-3 130 SPO0132 nan Signal transduction histidine kinase (BaeS) (PDB:1JOY)!!!DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain (OmpR) (PDB:1XHF)!!!CheY-like REC (receiver) domain, includes chemotaxis protein CheY  and sporulation regulator Spo0F (CheY) (PDB:6QRJ)
Ruegeria pomeroyi DSS-3 131 0.001320247 0.003966073 0.001220971 6.73615E-4 SPO0133 K06894 nan Uncharacterized conserved protein YfaS, alpha-2-macroglobulin family (YfaS) (PDB:2A73)
Ruegeria pomeroyi DSS-3 132 5.98839E-5 3.65146E-5 1.16847E-5 SPO0134 K09957 nan Uncharacterized conserved protein (PDB:2H1T)
Ruegeria pomeroyi DSS-3 133 5.69481E-6 SPO0135 K05367 nan Membrane carboxypeptidase/penicillin-binding protein PbpC (PbpC)
Ruegeria pomeroyi DSS-3 134 7.25787E-6 1.43727E-4 2.82251E-5 2.60746E-5 SPO0136 nan Uncharacterized protein STM3548, contains class I glutamine amidotransferase domain (PDB:2GK3) (PUBMED:17968677)
Ruegeria pomeroyi DSS-3 135 1.3431E-5 8.10789E-5 1.53213E-5 2.44742E-5 SPO0137 nan
Ruegeria pomeroyi DSS-3 136 2.35902E-5 4.57313E-6 1.88721E-5 2.13884E-5 SPO0138 nan Uncharacterized conserved protein, DUF58 family, contains vWF domain (YeaD2)
Ruegeria pomeroyi DSS-3 137 0.001259833 0.002523431 0.002435513 0.001935514 SPO0139 K03924 nan MoxR-like ATPase (MoxR) (PDB:2R44)
Ruegeria pomeroyi DSS-3 138 3.55686E-5 1.5255E-4 2.41866E-5 1.84957E-5 SPO0140 K09986 nan Uncharacterized conserved protein, DUF1285 family (PDB:2RA9)
Ruegeria pomeroyi DSS-3 139 4.64913E-5 1.28047E-5 6.00514E-5 3.63214E-5 SPO0141 K23779 nan Transcriptional regulator, contains XRE-family HTH domain (HipB) (PDB:1ADR)!!!Cupin domain protein related to quercetin dioxygenase (QdoI) (PDB:2H0V)
Ruegeria pomeroyi DSS-3 140 0.00167001 0.005402491 0.004737078 0.001275331 SPO0142 K00626 Ethylmalonyl pathway Acetyl-CoA acetyltransferase (PaaJ) (PDB:1AFW)
Ruegeria pomeroyi DSS-3 141 SPO0143 K18979 nan Epoxyqueuosine reductase QueG (queuosine biosynthesis) (QueG) (PDB:5D08) (PUBMED:2150253)
Ruegeria pomeroyi DSS-3 142 1.68854E-4 5.7835E-4 1.53209E-4 2.35208E-4 SPO0144 K03688 nan Predicted protein kinase regulating ubiquinone biosynthesis, AarF/ABC1/UbiB family (AarF) (PDB:4PED)
Ruegeria pomeroyi DSS-3 143 3.61133E-4 3.00766E-4 3.03437E-4 3.05574E-4 SPO0145 K03183 Ubiquinone biosynthesis, prokaryotes, chorismate (+ polyprenyl-PP) => ubiquinol Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG (UbiE) (PDB:4OBW)
Ruegeria pomeroyi DSS-3 144 3.88112E-5 1.18369E-4 1.0285E-4 4.26923E-5 SPO0146 K10563 nan Formamidopyrimidine-DNA glycosylase (Nei) (PDB:1EE8)
Ruegeria pomeroyi DSS-3 145 0.002767181 0.004979779 0.002704741 0.005041945 SPO0147 K01692 beta-Oxidation Enoyl-CoA hydratase/carnithine racemase (CaiD) (PDB:1DCI)
Ruegeria pomeroyi DSS-3 146 9.15299E-4 4.71865E-4 0.001214085 0.001140441 SPO0148 K02968 nan Ribosomal protein S20 (RpsT) (PDB:4V4H)
Ruegeria pomeroyi DSS-3 147 5.86729E-5 3.22189E-5 5.04587E-5 3.95064E-5 SPO0149 K02313 nan Chromosomal replication initiation ATPase DnaA (DnaA) (PDB:1L8Q)
Ruegeria pomeroyi DSS-3 148 0.005351541 0.018061312 0.005376146 0.005025774 SPO0150 K02338 nan DNA polymerase III sliding clamp (beta) subunit, PCNA homolog (DnaN) (PDB:1JQJ)
Ruegeria pomeroyi DSS-3 149 3.75123E-6 3.63523E-6 1.35044E-5 1.27541E-5 SPO0151 K03629 nan Recombinational DNA repair ATPase RecF (RecF) (PDB:5Z67)
Ruegeria pomeroyi DSS-3 150 SPO0152 nan Threonine/homoserine/homoserine lactone efflux protein (RhtB)
Ruegeria pomeroyi DSS-3 151 SPO0153 nan DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA (AcrR) (PDB:2QOP)
Ruegeria pomeroyi DSS-3 152 SPO0154 K00355 nan Putative NADPH-quinone reductase (modulator of drug activity B) (MdaB) (PDB:1D4A)
Ruegeria pomeroyi DSS-3 153 0.002319513 0.006871707 0.002596718 0.003013775 SPO0155 K02470 nan DNA gyrase/topoisomerase IV, subunit B (GyrB) (PDB:1EI1)
Ruegeria pomeroyi DSS-3 154 1.05006E-6 9.98507E-6 SPO0156 K14414 nan Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain (RtcR)
Ruegeria pomeroyi DSS-3 155 9.80677E-7 1.23238E-4 SPO0157 K11089 nan Uncharacterized conserved protein, contains a von Willebrand factor type A (vWA) domain (ViaA)
Ruegeria pomeroyi DSS-3 156 SPO_tRNA-Gln-1 nan
Ruegeria pomeroyi DSS-3 157 SPO_tRNA-Pro-2 nan
Ruegeria pomeroyi DSS-3 158 4.67386E-6 7.77319E-6 6.62131E-6 SPO0160 nan RNA-splicing ligase RtcB, repairs tRNA damage (RtcB) (PDB:1UC2)
Ruegeria pomeroyi DSS-3 159 5.51871E-5 1.84079E-4 1.0858E-4 1.33705E-4 SPO0161 K07684 nan DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains (CitB) (PDB:1A04)
Ruegeria pomeroyi DSS-3 160 3.38999E-6 SPO0162 nan Uncharacterized conserved protein
Ruegeria pomeroyi DSS-3 161 2.03523E-5 6.67289E-7 4.89345E-6 SPO0163 nan Signal transduction histidine kinase (BaeS) (PDB:1JOY)!!!CheY-like REC (receiver) domain, includes chemotaxis protein CheY  and sporulation regulator Spo0F (CheY) (PDB:6QRJ)!!!PAS domain (PAS) (PDB:2MWG)
Ruegeria pomeroyi DSS-3 162 3.33341E-6 4.88159E-6 8.33352E-7 4.16676E-6 SPO0164 nan Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex or glutathione oxidoreductase (Lpd) (PDB:6QKG)!!!2,4-dienoyl-CoA reductase or related NADH-dependent reductase, Old Yellow Enzyme (OYE) family (FadH) (PDB:1BWK)
Ruegeria pomeroyi DSS-3 163 2.26E-6 SPO0165 nan Pyrroline-5-carboxylate reductase (ProC) (PDB:3GT0) (PUBMED:22125496;26507882)
Ruegeria pomeroyi DSS-3 164 5.2418E-6 1.017E-4 2.82251E-5 2.23113E-5 SPO0166 K22551 nan NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase, or a related oxidoreductase (FadH2) (PDB:1VRQ)!!!2,4-dienoyl-CoA reductase or related NADH-dependent reductase, Old Yellow Enzyme (OYE) family (FadH) (PDB:1BWK)
Ruegeria pomeroyi DSS-3 165 1.68331E-5 3.9663E-5 3.68224E-5 2.45482E-5 SPO0167 K14083 Methanogenesis, methylamine/dimethylamine/trimethylamine => methane Trimethylamine:corrinoid methyltransferase (MttB2)
Ruegeria pomeroyi DSS-3 166 SPO0168 nan DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA (AcrR) (PDB:2QOP)
Ruegeria pomeroyi DSS-3 167 SPO0169 nan Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain) (MltE) (PDB:153L)
Ruegeria pomeroyi DSS-3 168 SPO0170 K02400 nan Flagellar biosynthesis protein FlhA (FlhA) (PDB:6AI0)
Ruegeria pomeroyi DSS-3 169 SPO0171 K02421 nan Flagellar biosynthesis protein FliR (FliR) (PDB:6S3R)
Ruegeria pomeroyi DSS-3 170 SPO0172 K02401 nan Flagellar biosynthesis protein FlhB (FlhB) (PDB:6S3L)
Ruegeria pomeroyi DSS-3 171 SPO0173 nan
Ruegeria pomeroyi DSS-3 172 SPO0174 K02415 nan
Ruegeria pomeroyi DSS-3 173 SPO0175 K02393 nan Flagellar basal body L-ring protein FlgH (FlgH)
Ruegeria pomeroyi DSS-3 174 SPO0176 K02386 nan Flagellar basal body P-ring formation protein FlgA (FlgA) (PDB:3VJP)
Ruegeria pomeroyi DSS-3 175 SPO0177 K02392 nan Flagellar basal body rod protein FlgG (FlgG) (PDB:6JZR)
Ruegeria pomeroyi DSS-3 176 SPO0178 K02391 nan Flagellar basal body rod protein FlgG (FlgG) (PDB:6JZR)
Ruegeria pomeroyi DSS-3 177 SPO0179 K02420 nan Flagellar biosynthesis protein FliQ (FliQ) (PDB:6F2D)
Ruegeria pomeroyi DSS-3 178 SPO0180 K02408 nan Flagellar hook-basal body complex protein FliE (FliE)
Ruegeria pomeroyi DSS-3 179 SPO0181 K02388 nan Flagellar basal body rod protein FlgC (FlgC)
Ruegeria pomeroyi DSS-3 180 SPO0182 K02387 nan Flagellar basal body rod protein FlgB (FlgB)
Ruegeria pomeroyi DSS-3 181 SPO0183 K02412 nan Flagellar biosynthesis/type III secretory pathway ATPase FliI (FliI) (PDB:5B0O)
Ruegeria pomeroyi DSS-3 182 4.34993E-6 SPO0184 K07793 nan TctA family transporter (PUBMED:14499931)
Ruegeria pomeroyi DSS-3 183 SPO0185 K07794 nan
Ruegeria pomeroyi DSS-3 184 0.001241144 0.003210732 0.001191296 6.77039E-4 SPO0186 K07795 nan Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC (TctC) (PDB:2DVZ)
Ruegeria pomeroyi DSS-3 185 6.21243E-5 1.61523E-5 1.57382E-5 SPO0187 nan DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain (OmpR) (PDB:1XHF)
Ruegeria pomeroyi DSS-3 186 7.74331E-6 1.33743E-5 2.9782E-6 1.03244E-5 SPO0188 K07649 nan Signal transduction histidine kinase (BaeS) (PDB:1JOY)
Ruegeria pomeroyi DSS-3 187 1.44945E-5 1.6105E-6 SPO0189 K02012 nan ABC-type Fe3+ transport system, periplasmic component (AfuA) (PDB:6IVY)
Ruegeria pomeroyi DSS-3 188 4.09072E-6 SPO0190 K00108 Betaine biosynthesis, choline => betaine Choline dehydrogenase or related flavoprotein (BetA) (PDB:1B4V)
Ruegeria pomeroyi DSS-3 189 SPO0191 K02557 nan Flagellar motor protein MotB (MotB)
Ruegeria pomeroyi DSS-3 190 SPO0192 K02390 nan Flagellar hook protein FlgE (FlgE) (PDB:3A69)
Ruegeria pomeroyi DSS-3 191 SPO0193 K02396 nan Flagellar hook-associated protein FlgK (FlgK) (PDB:2D4Y)
Ruegeria pomeroyi DSS-3 192 SPO0194 nan Flagellin and related hook-associated protein FlgL (FlgL) (PDB:1IO1)
Ruegeria pomeroyi DSS-3 193 SPO0195 K02394 nan Flagellar basal body P-ring protein FlgI (FlgI)
Ruegeria pomeroyi DSS-3 194 SPO0196 K02419 nan Flagellar biosynthesis protein FliP (FliP) (PDB:5H72)
Ruegeria pomeroyi DSS-3 195 SPO0197 K02417 nan Flagellar motor switch/type III secretory pathway protein FliN (FliN) (PDB:1O9Y)
Ruegeria pomeroyi DSS-3 196 SPO0198 nan Flagellar biosynthesis/type III secretory pathway protein FliH (FliH) (PDB:5B0O)
Ruegeria pomeroyi DSS-3 197 SPO0199 K02409 nan Flagellar biosynthesis/type III secretory pathway M-ring protein FliF/YscJ (FliF) (PDB:6SCN)
Ruegeria pomeroyi DSS-3 198 SPO0200 K02415 nan Flagellar basal body-associated protein FliL (FliL)
Ruegeria pomeroyi DSS-3 199 SPO0201 nan
Ruegeria pomeroyi DSS-3 200 SPO0202 K02383 nan Flagellar motility protein MotE, a chaperone for MotC folding (MotE) (PUBMED:15101977)
Ruegeria pomeroyi DSS-3 201 SPO0203 K02556 nan Flagellar motor component MotA (MotA)
Ruegeria pomeroyi DSS-3 202 SPO0204 nan
Ruegeria pomeroyi DSS-3 203 SPO0205 nan 2-methylcitrate dehydratase PrpD (PrpD) (PDB:1SZQ)
Ruegeria pomeroyi DSS-3 204 1.66418E-5 SPO0206 K03566 nan DNA-binding transcriptional regulator, LysR family (LysR) (PDB:2FYI)
Ruegeria pomeroyi DSS-3 205 SPO0207 K00315 nan Glycine cleavage system protein T (aminomethyltransferase) (GcvT) (PDB:2GAH) (PUBMED:25433025;25505271)!!!Glycine/D-amino acid oxidase (deaminating) (DadA) (PDB:3AWI)
Ruegeria pomeroyi DSS-3 206 SPO_tRNA-Pro-3 nan
Ruegeria pomeroyi DSS-3 207 6.32919E-6 8.76349E-6 1.94744E-5 SPO0209 K03324 nan Na+/phosphate symporter (NptA)
Ruegeria pomeroyi DSS-3 208 0.007392965 0.005642894 0.009001346 0.00543742 SPO0210 K00052 Isoleucine biosynthesis, pyruvate => 2-oxobutanoate Isocitrate/isopropylmalate dehydrogenase (LeuB) (PDB:1GC9)
Ruegeria pomeroyi DSS-3 209 SPO0211 nan DNA-binding transcriptional regulator, LysR family (LysR) (PDB:2FYI)
Ruegeria pomeroyi DSS-3 210 SPO0212 nan Nucleoside-diphosphate-sugar epimerase (WcaG) (PDB:2X4G)
Ruegeria pomeroyi DSS-3 211 1.38448E-5 SPO0213 nan Metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family (ElsH) (PUBMED:15178340)
Ruegeria pomeroyi DSS-3 212 SPO0214 nan
Ruegeria pomeroyi DSS-3 213 0.001269122 0.002195927 0.002974491 0.002193983 SPO0215 K01704 Isoleucine biosynthesis, pyruvate => 2-oxobutanoate 3-isopropylmalate dehydratase small subunit (LeuD) (PDB:3Q3W)
Ruegeria pomeroyi DSS-3 214 0.002071155 0.007981241 0.006268619 0.004104369 SPO0216 K01703 Isoleucine biosynthesis, pyruvate => 2-oxobutanoate Homoaconitase/3-isopropylmalate dehydratase large subunit (LeuC) (PDB:4KP1)
Ruegeria pomeroyi DSS-3 215 SPO0217 nan
Ruegeria pomeroyi DSS-3 216 1.2204E-6 3.99403E-5 1.2204E-6 SPO0218 K03442 nan Small-conductance mechanosensitive channel MscK (MscK)
Ruegeria pomeroyi DSS-3 217 1.24424E-4 2.81937E-5 6.57872E-5 8.79547E-5 SPO0219 K09710 nan Ribosomal silencing factor RsfS, regulates association of 30S and 50S subunits (RsfS) (PDB:6SJ6)
Ruegeria pomeroyi DSS-3 218 8.80094E-6 3.52038E-6 SPO0220 K00783 nan 23S rRNA pseudoU1915 N3-methylase RlmH (RlmH) (PDB:1NS5)
Ruegeria pomeroyi DSS-3 219 3.41105E-6 3.41105E-6 SPO0221 nan Multimeric flavodoxin WrbA, includes NAD(P)H:quinone oxidoreductase (WrbA) (PDB:4DY4)
Ruegeria pomeroyi DSS-3 220 3.70067E-6 6.77497E-5 1.03619E-4 9.37502E-6 SPO0222 K00259 nan Alanine dehydrogenase (includes sporulation protein SpoVN) (Ald) (PDB:2EEZ)
Ruegeria pomeroyi DSS-3 221 1.10197E-4 9.62763E-6 5.17866E-5 3.25172E-5 SPO0223 K03719 nan DNA-binding transcriptional regulator, Lrp family (Lrp) (PDB:1I1G)
Ruegeria pomeroyi DSS-3 222 2.34977E-4 6.12958E-4 1.45247E-4 1.66854E-4 SPO0224 K22468 nan Polyphosphate kinase 2, PPK2 family (PPK2) (PDB:3CZP)
Ruegeria pomeroyi DSS-3 223 SPO0225 nan DNA-binding transcriptional regulator, MarR family (MarR) (PDB:1JGS)
Ruegeria pomeroyi DSS-3 224 1.33296E-6 5.63972E-5 1.33296E-6 SPO0226 nan Cytochrome P450 (CypX) (PDB:3A4Z)
Ruegeria pomeroyi DSS-3 225 6.96711E-4 0.010331272 4.51628E-4 0.001759942 SPO0227 K01406 nan Spore germination protein YkwD and related proteins with CAP (CSP/antigen 5/PR1) domain (YkwD) (PDB:1CFE) (PUBMED:31199835)!!!Ca2+-binding protein, RTX toxin-related (PDB:1AF0) (PUBMED:15135544)
Ruegeria pomeroyi DSS-3 226 SPO0228 K15270 nan Permease of the drug/metabolite transporter (DMT) superfamily (RhaT) (PDB:5I20)
Ruegeria pomeroyi DSS-3 227 1.37295E-4 1.99669E-5 0.001887129 5.22258E-4 SPO0229 K02970 nan Ribosomal protein S21 (RpsU) (PDB:4V4H)
Ruegeria pomeroyi DSS-3 228 2.0655E-4 2.40468E-4 3.47489E-4 2.3085E-4 SPO0230 K18587 nan Ubiquinone biosynthesis protein COQ9
Ruegeria pomeroyi DSS-3 229 9.27894E-4 0.003825946 0.001798127 0.001391701 SPO0231 K00344 nan NADPH:quinone reductase or related Zn-dependent oxidoreductase (Qor) (PDB:2VCY)
Ruegeria pomeroyi DSS-3 230 7.09566E-4 0.008806843 0.005164297 0.001005988 SPO0232 K00344 nan NADPH:quinone reductase or related Zn-dependent oxidoreductase (Qor) (PDB:2VCY)
Ruegeria pomeroyi DSS-3 231 3.48071E-5 1.34274E-6 1.54698E-5 3.86746E-6 SPO0233 K03719 nan DNA-binding transcriptional regulator, Lrp family (Lrp) (PDB:1I1G)
Ruegeria pomeroyi DSS-3 232 SPO0234 nan Saccharopine dehydrogenase, NADP-dependent (Lys9) (PDB:1E5L)
Ruegeria pomeroyi DSS-3 233 1.85239E-5 6.22403E-4 1.08964E-6 7.04634E-5 SPO0235 nan Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenase (AdhE) (PDB:1A4S)
Ruegeria pomeroyi DSS-3 234 1.76019E-6 SPO0236 K01126 nan Glycerophosphoryl diester phosphodiesterase (UgpQ) (PDB:1O1Z)
Ruegeria pomeroyi DSS-3 235 1.71325E-5 SPO0237 K05816 nan ABC-type sugar transport system, ATPase component MalK (MalK) (PDB:2ONK)
Ruegeria pomeroyi DSS-3 236 SPO0238 K05815 nan ABC-type glycerol-3-phosphate transport system, permease component (UgpE) (PDB:1VR4)
Ruegeria pomeroyi DSS-3 237 SPO0239 K05814 nan ABC-type sugar transport system, permease component (UgpA) (PDB:3FH6)
Ruegeria pomeroyi DSS-3 238 1.20319E-4 1.81208E-4 1.06818E-4 1.38585E-4 SPO0240 K05813 nan ABC-type glycerol-3-phosphate transport system, periplasmic component (UgpB) (PDB:2Z8D)
Ruegeria pomeroyi DSS-3 239 8.88639E-6 3.99403E-5 7.10911E-6 8.88639E-6 SPO0241 nan DNA-binding transcriptional regulator, LysR family (LysR) (PDB:2FYI)
Ruegeria pomeroyi DSS-3 240 SPO_Sp16SA nan
Ruegeria pomeroyi DSS-3 241 SPO_tRNA-Ile-1 nan
Ruegeria pomeroyi DSS-3 242 SPO_tRNA-Ala-1 nan
Ruegeria pomeroyi DSS-3 243 SPO_Sp23SA nan
Ruegeria pomeroyi DSS-3 244 SPO_Sp5SD nan
Ruegeria pomeroyi DSS-3 245 7.91264E-5 2.37003E-4 2.97401E-4 1.10919E-4 SPO0247 K01662 C5 isoprenoid biosynthesis, non-mevalonate pathway Deoxyxylulose-5-phosphate synthase (Dxs) (PDB:2O1S)
Ruegeria pomeroyi DSS-3 246 1.23947E-4 8.81254E-5 1.23311E-4 1.2204E-4 SPO0248 nan Geranylgeranyl pyrophosphate synthase (IspA) (PDB:2AZJ)
Ruegeria pomeroyi DSS-3 247 1.90687E-4 7.62749E-5 1.90687E-4 SPO0249 K03602 nan Exonuclease VII small subunit (XseB) (PDB:1VP7)
Ruegeria pomeroyi DSS-3 248 6.41897E-5 3.02513E-4 6.24067E-5 1.25408E-4 SPO0250 nan Acetoin utilization deacetylase AcuC or a related deacetylase (AcuC) (PDB:1C3P)
Ruegeria pomeroyi DSS-3 249 5.68035E-4 0.001021066 8.59516E-4 7.25167E-4 SPO0251 K02483 nan DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain (OmpR) (PDB:1XHF)
Ruegeria pomeroyi DSS-3 250 2.4408E-5 3.23046E-6 SPO0252 nan DNA-binding transcriptional regulator, MarR family (MarR) (PDB:1JGS)
Ruegeria pomeroyi DSS-3 251 6.17826E-4 3.376E-4 2.66326E-4 8.46015E-4 SPO0253 K00826 Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase (IlvE) (PDB:1A3G)
Ruegeria pomeroyi DSS-3 252 0.001538453 6.47591E-4 6.06855E-4 7.73615E-4 SPO0254 K04063 nan Organic hydroperoxide reductase OsmC/OhrA (OsmC) (PDB:1QWI)
Ruegeria pomeroyi DSS-3 253 SPO0255 K23775 nan DNA-binding transcriptional regulator, MarR family (MarR) (PDB:1JGS)
Ruegeria pomeroyi DSS-3 254 SPO0256 K02638 nan Plastocyanin (PetE) (PDB:3BQV)
Ruegeria pomeroyi DSS-3 255 2.35247E-5 7.8905E-6 SPO0257 K08995 nan Predicted outer membrane protein, contains DUF4142 domain
Ruegeria pomeroyi DSS-3 256 8.17028E-5 9.25227E-6 7.01915E-5 5.55917E-5 SPO0258 K18991 nan AraC-type DNA-binding domain and AraC-containing proteins (AraC) (PDB:1BL0)
Ruegeria pomeroyi DSS-3 257 SPO0259 nan
Ruegeria pomeroyi DSS-3 258 1.05207E-6 1.05207E-6 SPO0260 K01113 Tetrahydrofolate biosynthesis, GTP => THF Phosphodiesterase/alkaline phosphatase D (PhoD) (PDB:2YEQ)
Ruegeria pomeroyi DSS-3 259 SPO0261 K15270 nan Permease of the drug/metabolite transporter (DMT) superfamily (RhaT) (PDB:5I20)
Ruegeria pomeroyi DSS-3 260 0.001050063 1.4067E-4 3.6244E-4 9.8705E-4 SPO0262 K19221 Cobalamin biosynthesis, cobyrinate a,c-diamide => cobalamin ATP:corrinoid adenosyltransferase (BtuR) (PDB:4HUT)
Ruegeria pomeroyi DSS-3 261 SPO0263 K15270 nan Permease of the drug/metabolite transporter (DMT) superfamily (RhaT) (PDB:5I20)
Ruegeria pomeroyi DSS-3 262 5.467E-4 4.9542E-4 9.33067E-4 8.20256E-4 SPO0264 nan Crotonobetainyl-CoA:carnitine CoA-transferase CaiB and related acyl-CoA transferases (CaiB) (PDB:1P5H)
Ruegeria pomeroyi DSS-3 263 SPO0265 K13936 nan Predicted permease, AEC (auxin efflux carrier) family (YfdV)
Ruegeria pomeroyi DSS-3 264 5.8673E-6 1.234E-5 1.17346E-5 9.38767E-6 SPO0266 K06950 nan HD superfamily phosphodieaserase, includes HD domain of RNase Y (RnaY) (PDB:3DTO) (PUBMED:19779461)
Ruegeria pomeroyi DSS-3 265 1.68805E-4 5.08421E-4 2.64586E-4 2.28074E-4 SPO0267 K01736 Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate Chorismate synthase (AroC) (PDB:1Q1L)
Ruegeria pomeroyi DSS-3 266 2.80193E-5 SPO0268 K00794 Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD 6,7-dimethyl-8-ribityllumazine synthase (Riboflavin synthase beta chain) (RibE) (PDB:1C2Y)
Ruegeria pomeroyi DSS-3 267 6.73013E-6 1.12436E-5 SPO0269 K07734 nan Predicted FMN-binding regulatory protein PaiB (PaiB) (PDB:2OL5)
Ruegeria pomeroyi DSS-3 268 9.87439E-5 5.90784E-4 2.47085E-4 7.93559E-5 SPO0270 K00799 nan Glutathione S-transferase (GstA) (PDB:1A0F)
Ruegeria pomeroyi DSS-3 269 0.006350799 0.009740627 0.007659137 0.005017987 SPO0271 K00411 Cytochrome bc1 complex respiratory unit Rieske Fe-S protein (QcrA/PetC) (PDB:5CXM) (PUBMED:27663073)
Ruegeria pomeroyi DSS-3 270 2.19299E-4 1.30788E-4 1.01056E-4 1.88029E-4 SPO0272 K00412 Cytochrome bc1 complex respiratory unit Cytochrome b subunit of the bc complex (QcrB/PetB) (PDB:1VF5)
Ruegeria pomeroyi DSS-3 271 4.38195E-4 0.001117545 6.65266E-4 5.61936E-4 SPO0273 K00413 Cytochrome bc1 complex respiratory unit Cytochrome c1 (CYT1)
Ruegeria pomeroyi DSS-3 272 SPO0274 nan
Ruegeria pomeroyi DSS-3 273 SPO0275 nan Cytochrome b subunit of Ni2+-dependent hydrogenase (CytB)
Ruegeria pomeroyi DSS-3 274 SPO0276 nan DNA-binding transcriptional regulator, CsgD family (CsgD)
Ruegeria pomeroyi DSS-3 275 2.10212E-5 6.26113E-5 2.18971E-5 4.24803E-5 SPO0277 K18707 nan tRNA A37 methylthiotransferase MiaB (MiaB) (PDB:4JC0) (PUBMED:17407324;20472640;20584901)
Ruegeria pomeroyi DSS-3 276 2.55195E-5 9.09954E-5 1.03439E-4 1.9735E-5 SPO0278 K01778 Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine Diaminopimelate epimerase (DapF) (PDB:1BWZ)
Ruegeria pomeroyi DSS-3 277 SPO_tRNA-Lys-2 nan
Ruegeria pomeroyi DSS-3 278 SPO0280 nan Transposase
Ruegeria pomeroyi DSS-3 279 1.39918E-5 5.59673E-5 3.14816E-5 SPO0281 nan Heavy metal-bindng TRASH/YHS domain, predicted Cu/Ag metallochaperone (YHS)
Ruegeria pomeroyi DSS-3 280 SPO0282 nan
Ruegeria pomeroyi DSS-3 281 2.4408E-5 SPO0283 K08591 nan Phospholipid biosynthesis protein PlsY, probable glycerol-3-phosphate acyltransferase (PlsY) (PDB:5XJ5) (PUBMED:29684280)
Ruegeria pomeroyi DSS-3 282 0.001216771 0.002384452 0.001570728 0.001321102 SPO0284 K01465 Uridine monophosphate biosynthesis, glutamine (+ PRPP) => UMP Dihydroorotase or related cyclic amidohydrolase (AllB) (PDB:1J79)
Ruegeria pomeroyi DSS-3 283 SPO0285 nan
Ruegeria pomeroyi DSS-3 284 1.1678E-4 5.55842E-5 5.99678E-5 1.78851E-4 SPO0286 nan
Ruegeria pomeroyi DSS-3 285 3.75243E-4 7.60284E-4 2.00718E-4 3.12555E-4 SPO0287 K00609 Uridine monophosphate biosynthesis, glutamine (+ PRPP) => UMP Aspartate carbamoyltransferase, catalytic subunit (PyrB) (PDB:1NBE)
Ruegeria pomeroyi DSS-3 286 8.94259E-5 1.40187E-4 9.53875E-5 1.13624E-4 SPO0288 K21929 nan Uracil-DNA glycosylase (Udg4) (PDB:3IKB)
Ruegeria pomeroyi DSS-3 287 2.26295E-4 2.15416E-4 1.94098E-4 1.42584E-4 SPO0289 K07096 nan Predicted phosphoesterase, related to the Icc protein (PDB:2YVT)
Ruegeria pomeroyi DSS-3 288 SPO0290 K05834 nan Threonine/homoserine/homoserine lactone efflux protein (RhtB)
Ruegeria pomeroyi DSS-3 289 1.98315E-4 1.45119E-4 2.55266E-4 3.07133E-4 SPO0291 K03638 Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor Molybdopterin biosynthesis enzyme MoaB/MogA (MoaB) (PDB:1DI6) (PUBMED:32239579)
Ruegeria pomeroyi DSS-3 290 2.32127E-5 4.93873E-5 7.17138E-6 1.88721E-5 SPO0292 nan Multidrug resistance efflux pump EmrA (EmrA) (PDB:4TKO)
Ruegeria pomeroyi DSS-3 291 1.47837E-5 9.76453E-6 8.07853E-6 2.8598E-5 SPO0293 nan Multidrug efflux pump subunit AcrB (AcrB) (PDB:1IWG)
Ruegeria pomeroyi DSS-3 292 SPO0294 K03574 nan ADP-ribose pyrophosphatase YjhB, NUDIX family (YjhB) (PDB:3GZ5)
Ruegeria pomeroyi DSS-3 293 8.07616E-6 2.55745E-5 9.01838E-5 SPO0295 nan Thiol-disulfide interchange protein, contains DsbC and DsbD domains
Ruegeria pomeroyi DSS-3 294 4.52931E-5 3.85388E-5 2.54774E-5 1.13233E-5 SPO0296 K07735 nan Putative transcriptional regulator, AlgH/UPF0301 family (AlgH) (PDB:2AJ2)
Ruegeria pomeroyi DSS-3 295 2.25928E-5 2.14976E-4 3.8234E-5 8.86332E-5 SPO0297 K07566 nan tRNA A37 threonylcarbamoyladenosine synthetase subunit TsaC/SUA5/YrdC (TsaC) (PDB:1HRU)
Ruegeria pomeroyi DSS-3 296 3.87428E-5 5.22221E-5 6.81227E-5 4.81056E-5 SPO0298 nan Acyl-CoA dehydrogenase related to the alkylation response protein AidB (CaiA) (PDB:1BUC)
Ruegeria pomeroyi DSS-3 297 SPO0299 nan Glyoxylase or a related metal-dependent hydrolase, beta-lactamase superfamily II (GloB) (PDB:1QH3) (PUBMED:25670698)
Ruegeria pomeroyi DSS-3 298 2.36402E-4 1.88695E-4 1.33355E-4 8.48621E-5 SPO0300 nan
Ruegeria pomeroyi DSS-3 299 3.30939E-5 1.4238E-4 1.11804E-5 8.94431E-6 SPO0301 K01126 nan Glycerophosphoryl diester phosphodiesterase (UgpQ) (PDB:1O1Z)
Ruegeria pomeroyi DSS-3 300 SPO0302 nan
Ruegeria pomeroyi DSS-3 301 SPO0303 nan
Ruegeria pomeroyi DSS-3 302 4.76848E-4 6.4785E-4 6.83125E-4 4.90243E-4 SPO0304 nan
Ruegeria pomeroyi DSS-3 303 SPO0305 nan Predicted branched-chain amino acid permease (azaleucine resistance) (AzlC)
Ruegeria pomeroyi DSS-3 304 1.19957E-4 2.98555E-4 1.02463E-4 1.08711E-4 SPO0306 K02379 nan Formate dehydrogenase assembly factor FdhD, a sulfurtransferase (FdhD) (PDB:2PW9)
Ruegeria pomeroyi DSS-3 305 2.60274E-6 7.80825E-6 3.25343E-5 SPO0307 K03752 nan Molybdopterin-guanine dinucleotide biosynthesis protein A (MobA) (PDB:1E5K) (PUBMED:32239579)
Ruegeria pomeroyi DSS-3 306 3.3692E-5 3.9663E-5 7.86146E-5 2.13383E-5 SPO0308 K03753 nan Molybdopterin-guanine dinucleotide biosynthesis protein (MobB) (PDB:1NP6) (PUBMED:32239579)
Ruegeria pomeroyi DSS-3 307 SPO0309 nan Molybdopterin Mo-transferase (molybdopterin biosynthesis) (MoeA) (PDB:2NQU) (PUBMED:18801996;32239579)
Ruegeria pomeroyi DSS-3 308 7.4054E-5 3.75803E-5 5.4612E-5 9.21853E-5 SPO0310 K03750 Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor Molybdopterin Mo-transferase (molybdopterin biosynthesis) (MoeA) (PDB:2NQU) (PUBMED:18801996;32239579)
Ruegeria pomeroyi DSS-3 309 2.39344E-4 7.48425E-4 2.84699E-4 1.67213E-4 SPO0311 nan
Ruegeria pomeroyi DSS-3 310 0.001876361 0.003730348 0.008667169 0.002568702 SPO0312 K03624 nan Transcription elongation factor, GreA/GreB family (GreA) (PDB:1GRJ)
Ruegeria pomeroyi DSS-3 311 4.35856E-6 9.76318E-5 3.92271E-5 3.92271E-5 SPO0313 nan Lactoylglutathione lyase-related enzyme, vicinal oxygen chelate (VOC) family (VOC) (PDB:3OXH) (PUBMED:31710815)
Ruegeria pomeroyi DSS-3 312 SPO0314 K13639 nan DNA-binding transcriptional regulator, MerR family (SoxR) (PDB:2VZ4)
Ruegeria pomeroyi DSS-3 313 4.8457E-5 1.79175E-5 9.69138E-5 8.61457E-5 SPO0315 nan
Ruegeria pomeroyi DSS-3 314 0.004578328 0.008570436 0.007531501 0.004845401 SPO0316 K00311 nan Dehydrogenase (flavoprotein) (FixC) (PDB:4OPU)!!!Ferredoxin-like protein FixX (FixX)
Ruegeria pomeroyi DSS-3 315 0.001244866 0.003347679 0.001776367 0.001801834 SPO0317 nan Tetratricopeptide (TPR) repeat (TPR) (PDB:3AS4)
Ruegeria pomeroyi DSS-3 316 4.03519E-5 3.97367E-5 5.90515E-5 8.00477E-5 SPO0318 K00919 C5 isoprenoid biosynthesis, non-mevalonate pathway 4-diphosphocytidyl-2C-methyl-D-erythritol kinase (IspE) (PDB:1OJ4)
Ruegeria pomeroyi DSS-3 317 7.15421E-4 0.002231293 0.001057555 7.50434E-4 SPO0319 K02523 nan Geranylgeranyl pyrophosphate synthase (IspA) (PDB:2AZJ)
Ruegeria pomeroyi DSS-3 318 SPO0320 nan tRNA1(Val) A37 N6-methylase TrmN6 (TrmN6)
Ruegeria pomeroyi DSS-3 319 2.13688E-6 2.0174E-6 2.06565E-5 1.38897E-5 SPO0321 K15460 nan tRNA1(Val) A37 N6-methylase TrmN6 (TrmN6)
Ruegeria pomeroyi DSS-3 320 7.37324E-4 3.68153E-4 0.001739067 6.50879E-4 SPO0322 K09794 nan Uncharacterized conserved protein, DUF465 domain
Ruegeria pomeroyi DSS-3 321 SPO0323 nan Permease of the drug/metabolite transporter (DMT) superfamily (RhaT) (PDB:5I20)
Ruegeria pomeroyi DSS-3 322 SPO0324 K03566 nan DNA-binding transcriptional regulator, LysR family (LysR) (PDB:2FYI)
Ruegeria pomeroyi DSS-3 323 0.044091057 0.0044891 0.022520911 0.008995855 SPO0325 K00023 Fatty acid biosynthesis, elongation NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family (FabG) (PDB:6L1H)
Ruegeria pomeroyi DSS-3 324 0.07795952 0.04265399 0.13192186 0.053782545 SPO0326 K00626 Ethylmalonyl pathway Acetyl-CoA acetyltransferase (PaaJ) (PDB:1AFW)
Ruegeria pomeroyi DSS-3 325 SPO0327 K13593 nan EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant) (EAL) (PDB:2BAS)
Ruegeria pomeroyi DSS-3 326 SPO0328 K15537 nan Sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily (ERG3) (PDB:4ZR0)
Ruegeria pomeroyi DSS-3 327 SPO0329 nan
Ruegeria pomeroyi DSS-3 328 1.57358E-6 SPO0330 K00428 nan Cytochrome c peroxidase (MauG) (PDB:1EB7)
Ruegeria pomeroyi DSS-3 329 4.99254E-5 3.00215E-5 1.30198E-4 3.32836E-5 SPO0331 nan Thiol-disulfide isomerase or thioredoxin (TrxA) (PDB:1XFL)
Ruegeria pomeroyi DSS-3 330 0.001823084 0.006255852 0.001434824 0.001348236 SPO0332 K01755 Arginine biosynthesis, ornithine => arginine Argininosuccinate lyase (ArgH) (PDB:1AOS)
Ruegeria pomeroyi DSS-3 331 SPO0333 nan
Ruegeria pomeroyi DSS-3 332 6.78319E-5 3.19223E-4 1.16967E-4 4.60909E-5 SPO0334 K01586 Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine Diaminopimelate decarboxylase (LysA) (PDB:1D7K)
Ruegeria pomeroyi DSS-3 333 3.41626E-5 5.14972E-4 8.29355E-5 8.29355E-5 SPO0335 nan Membrane protein TolA involved in colicin uptake (TolA) (PDB:1S62)
Ruegeria pomeroyi DSS-3 334 3.43483E-4 7.87522E-4 0.001339813 2.63764E-4 SPO0336 nan Predicted  nucleic acid-binding protein, contains Zn-ribbon domain
Ruegeria pomeroyi DSS-3 335 2.825E-5 7.16698E-5 5.08499E-5 8.73866E-5 SPO0337 K09812 nan Cell division ATPase FtsE (FtsE)
Ruegeria pomeroyi DSS-3 336 2.93875E-5 1.47021E-4 3.48977E-5 3.0612E-5 SPO0338 K09811 nan Cell division protein FtsX (FtsX)
Ruegeria pomeroyi DSS-3 337 5.10759E-4 0.00153955 3.47286E-4 8.15858E-4 SPO0339 K00655 Triacylglycerol biosynthesis 1-acyl-sn-glycerol-3-phosphate acyltransferase (PlsC) (PDB:1IUQ)
Ruegeria pomeroyi DSS-3 338 0.005355089 0.008904662 0.005066235 0.00375827 SPO0340 K00382 Pyruvate oxidation, pyruvate => acetyl-CoA Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex or glutathione oxidoreductase (Lpd) (PDB:6QKG)
Ruegeria pomeroyi DSS-3 339 SPO0342 nan
Ruegeria pomeroyi DSS-3 340 0.007772194 0.004281394 0.006782688 0.00551768 SPO0343 K00658 Citrate cycle (TCA cycle, Krebs cycle) Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component (AceF) (PDB:1B5S)
Ruegeria pomeroyi DSS-3 341 0.008254131 0.021772966 0.008013923 0.008442115 SPO0344 K00164 Citrate cycle (TCA cycle, Krebs cycle) 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes (SucA) (PDB:2JGD)
Ruegeria pomeroyi DSS-3 342 1.59761E-4 4.35856E-6 5.07574E-5 7.32238E-5 SPO0344a nan Dipeptidyl aminopeptidase/acylaminoacyl peptidase (DAP2) (PDB:2JBW)
Ruegeria pomeroyi DSS-3 343 SPO0345 nan Uncharacterized membrane protein YhaH, DUF805 family (yhaH)
Ruegeria pomeroyi DSS-3 344 0.006639647 0.008895457 0.007535332 0.006444446 SPO0346 K01902 Citrate cycle (TCA cycle, Krebs cycle) Succinyl-CoA synthetase, alpha subunit (SucD) (PDB:1CQI)
Ruegeria pomeroyi DSS-3 345 0.001186096 4.1767E-4 9.96538E-4 0.00120776 SPO0346a nan
Ruegeria pomeroyi DSS-3 346 0.017350318 0.025988735 0.011414252 0.01394527 SPO0347 K01903 Citrate cycle (TCA cycle, Krebs cycle) Succinyl-CoA synthetase, beta subunit (SucC) (PDB:1SCU)
Ruegeria pomeroyi DSS-3 347 3.67098E-5 2.02727E-5 4.7478E-5 5.57989E-5 SPO0348 nan
Ruegeria pomeroyi DSS-3 348 0.026406066 0.04715277 0.06608796 0.027986957 SPO0349 K00024 Citrate cycle (TCA cycle, Krebs cycle) Malate/lactate dehydrogenase (Mdh) (PDB:4WLO)
Ruegeria pomeroyi DSS-3 349 SPO0350 K07090 nan Sulfite exporter TauE/SafE/YfcA and related permeases, UPF0721 family (TauE) (PUBMED:21183667;22797525)
Ruegeria pomeroyi DSS-3 350 SPO0351 nan
Ruegeria pomeroyi DSS-3 351 0.007717409 3.15269E-4 0.004460232 0.01029309 SPO0352 K14451 Ethylmalonyl pathway Citrate lyase beta subunit (CitE) (PDB:4ROQ)
Ruegeria pomeroyi DSS-3 352 SPO0353 nan Uncharacterized membrane protein
Ruegeria pomeroyi DSS-3 353 1.17104E-4 3.23046E-5 1.17104E-4 SPO0354 nan Uncharacterized conserved protein, DUF1737 domain (PDB:2NNR)
Ruegeria pomeroyi DSS-3 354 0.004429562 4.80243E-4 0.002708961 0.003554676 SPO0355 K14449 Ethylmalonyl pathway Acyl-CoA dehydratase PaaZ (MaoC) (PDB:5ZY8)
Ruegeria pomeroyi DSS-3 355 SPO0356 nan
Ruegeria pomeroyi DSS-3 356 SPO0357 nan
Ruegeria pomeroyi DSS-3 357 SPO0358 K00241 Citrate cycle (TCA cycle, Krebs cycle) Succinate dehydrogenase/fumarate reductase, cytochrome b subunit (SdhC) (PDB:2WU2) (PUBMED:18511537)
Ruegeria pomeroyi DSS-3 358 SPO0359 K00242 Citrate cycle (TCA cycle, Krebs cycle) Succinate dehydrogenase, hydrophobic anchor subunit (SdhD) (PDB:2WS3)
Ruegeria pomeroyi DSS-3 359 0.00610813 0.009155246 0.008347032 0.004885651 SPO0360 K00239 Citrate cycle (TCA cycle, Krebs cycle) Succinate dehydrogenase/fumarate reductase, flavoprotein subunit (SdhA) (PDB:1KF6)
Ruegeria pomeroyi DSS-3 360 2.95258E-4 1.40803E-4 7.1846E-4 2.99194E-4 SPO0360a nan
Ruegeria pomeroyi DSS-3 361 0.002867817 0.001511956 0.00558862 0.001996693 SPO0361 K00240 Citrate cycle (TCA cycle, Krebs cycle) Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit (SdhB/FrdB) (PDB:6LUM)
Ruegeria pomeroyi DSS-3 362 4.96477E-5 7.97404E-4 1.10752E-5 2.26851E-4 SPO0362 K01406 nan Ca2+-binding protein, RTX toxin-related (PDB:1AF0) (PUBMED:15135544)
Ruegeria pomeroyi DSS-3 363 SPO0363 nan
Ruegeria pomeroyi DSS-3 364 SPO0364 K01581 Polyamine biosynthesis, arginine => ornithine => putrescine Diaminopimelate decarboxylase (LysA) (PDB:1D7K)
Ruegeria pomeroyi DSS-3 365 8.18951E-5 4.26264E-5 6.23045E-5 7.77201E-5 SPO0365 K09967 nan Uncharacterized conserved protein YcgI, DUF1989 family (YcgI) (PDB:3DI4)
Ruegeria pomeroyi DSS-3 366 2.10596E-4 3.18047E-4 1.24884E-4 2.62954E-4 SPO0366 K03784 nan Purine-nucleoside phosphorylase (DeoD) (PDB:1A69)
Ruegeria pomeroyi DSS-3 367 8.28999E-4 0.001850936 0.00329333 5.94508E-4 SPO0367 K03746 nan DNA-binding protein H-NS (Hns) (PDB:1HNR)
Ruegeria pomeroyi DSS-3 368 0.005937069 1.20006E-4 7.42134E-6 0.004024838 SPO0368 K14447 Ethylmalonyl pathway Methylmalonyl-CoA mutase, N-terminal domain/subunit (Sbm) (PDB:6OXC)!!!Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) (Sbm) (PDB:1B1A)
Ruegeria pomeroyi DSS-3 369 1.04209E-6 9.37877E-6 SPO0369 K00631 nan Glycerol-3-phosphate O-acyltransferase (PlsB)
Ruegeria pomeroyi DSS-3 370 0.0434217 0.001455217 0.016987335 0.020953484 SPO0370 K14446 Ethylmalonyl pathway NADPH:quinone reductase or related Zn-dependent oxidoreductase (Qor) (PDB:2VCY)
Ruegeria pomeroyi DSS-3 371 3.67651E-5 6.10199E-6 2.06804E-5 1.11444E-4 SPO0371 K19732 nan DNA-binding transcriptional regulator, CsgD family (CsgD)
Ruegeria pomeroyi DSS-3 372 SPO0372 K20249 nan N-acyl-homoserine lactone synthase LasI (autoinducer biosynthesis) (LasI) (PDB:1K4J)
Ruegeria pomeroyi DSS-3 373 1.06293E-5 2.26556E-5 2.00775E-5 3.81866E-5 SPO0373 nan ATPase/5-3 helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V) (RecD) (PDB:1W36) (PUBMED:29901759;30601118)
Ruegeria pomeroyi DSS-3 374 9.22206E-5 5.08947E-5 3.45396E-5 6.83882E-5 SPO0374 nan
Ruegeria pomeroyi DSS-3 375 SPO0375 K07090 nan Sulfite exporter TauE/SafE/YfcA and related permeases, UPF0721 family (TauE) (PUBMED:21183667;22797525)
Ruegeria pomeroyi DSS-3 376 SPO0376 K23536 nan ABC-type guanosine uptake system NupNOPQ, permease subunit NupQ (NupQ) (PUBMED:21926227)
Ruegeria pomeroyi DSS-3 377 SPO0377 K23535 nan ABC-type guanosine uptake system NupNOPQ, permease component NupP (NupP) (PUBMED:21926227)
Ruegeria pomeroyi DSS-3 378 5.26522E-4 0.001277957 1.57165E-4 2.16507E-4 SPO0378 K23537 nan ABC-type guanosine uptake system NupNOPQ, ATPase component NupO (NupO) (PUBMED:21926227)
Ruegeria pomeroyi DSS-3 379 0.007533841 0.010200514 0.015268938 0.00451253 SPO0379 K07335 nan Lipoprotein Med, regulator of KinD/Spo0A, PBP1-ABC superfamily, includes NupN (Med) (PDB:2FQW) (PUBMED:21622736)
Ruegeria pomeroyi DSS-3 380 SPO0380 K03789 nan Ribosomal protein S18 acetylase RimI and related acetyltransferases (RimI) (PDB:1GHE)
Ruegeria pomeroyi DSS-3 381 2.52174E-5 SPO0381 K14742 nan tRNA A37 threonylcarbamoyladenosine modification protein TsaB (TsaB) (PDB:1OKJ)
Ruegeria pomeroyi DSS-3 382 0.001135068 0.001090222 0.00161719 0.001180587 SPO0382 K22074 nan Fe-S cluster biogenesis protein NfuA, 4Fe-4S-binding domain (NifU) (PDB:2Z51)
Ruegeria pomeroyi DSS-3 383 SPO0383 K01118 nan FMN-dependent NADH-azoreductase (AzoR) (PDB:1TIK)
Ruegeria pomeroyi DSS-3 384 1.12077E-5 6.10199E-6 2.80193E-6 2.80193E-6 SPO0384 nan Uncharacterized conserved protein containing a Zn-ribbon-like motif, possibly RNA-binding (PDB:3H0N)
Ruegeria pomeroyi DSS-3 385 4.73911E-5 1.01005E-4 6.13297E-5 2.69479E-5 SPO0385 K14584 Naphthalene degradation, naphthalene => salicylate 2-hydroxychromene-2-carboxylate isomerase (NahD)
Ruegeria pomeroyi DSS-3 386 3.39716E-4 8.22625E-4 9.17645E-4 2.35865E-4 SPO0386 nan Nucleotide-binding universal stress protein,  UspA family (UspA) (PDB:1JMV)
Ruegeria pomeroyi DSS-3 387 SPO0387 K07120 nan Uncharacterized membrane protein AbrB, regulator of aidB expression (AbrB)
Ruegeria pomeroyi DSS-3 388 5.6066E-4 0.00231067 0.002930868 0.001016077 SPO0388 K00826 Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase (IlvE) (PDB:1A3G)
Ruegeria pomeroyi DSS-3 389 3.5894E-6 SPO0389 K03719 nan DNA-binding transcriptional regulator, Lrp family (Lrp) (PDB:1I1G)
Ruegeria pomeroyi DSS-3 390 1.57358E-6 SPO0390 K00263 nan Glutamate dehydrogenase/leucine dehydrogenase (GdhA) (PDB:1B3B) (PUBMED:24391520)
Ruegeria pomeroyi DSS-3 391 SPO0391 K07104 Catechol meta-cleavage, catechol => acetyl-CoA / 4-methylcatechol => propanoyl-CoA Catechol-2,3-dioxygenase (CatE)
Ruegeria pomeroyi DSS-3 392 0.001407068 0.00113599 0.00262891 0.002162054 SPO0392 K01867 nan Tryptophanyl-tRNA synthetase (TrpS) (PDB:3N9I)
Ruegeria pomeroyi DSS-3 393 SPO0393 nan Membrane-associated serine protease, rhomboid family (GlpG) (PDB:2IC8)
Ruegeria pomeroyi DSS-3 394 SPO0394 nan
Ruegeria pomeroyi DSS-3 395 2.54774E-5 SPO0395 nan cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases (Crp) (PDB:1FT9)
Ruegeria pomeroyi DSS-3 396 SPO0396 K03980 nan Lipid II flippase MurJ/MviN (peptidoglycan biosynthesis) (MurJ) (PDB:5T77) (PUBMED:25013077)
Ruegeria pomeroyi DSS-3 397 1.18545E-4 5.36975E-4 7.51997E-5 1.47375E-4 SPO0397 K00990 nan UTP:GlnB (protein PII) uridylyltransferase (GlnD)
Ruegeria pomeroyi DSS-3 398 0.00318622 0.010157388 0.002867622 0.002273497 SPO0398 nan ABC-type branched-chain amino acid transport system, periplasmic component (LivK) (PDB:1USG)
Ruegeria pomeroyi DSS-3 399 7.12969E-5 8.61479E-5 1.36813E-4 5.33121E-5 SPO0399 K07056 nan 16S rRNA C1402 (ribose-2'-O) methylase RsmI (RsmI) (PDB:3KWP) (PUBMED:24078611)
Ruegeria pomeroyi DSS-3 400 SPO0400 K07460 nan Predicted endonuclease distantly related to archaeal Holliday junction resolvase, YraN/UPF0102 family (YraN) (PDB:3FOV)
Ruegeria pomeroyi DSS-3 401 0.001821148 0.004894456 0.002544529 0.002306551 SPO0401 K01920 Glutathione biosynthesis, glutamate => glutathione Glutathione synthase, LysX or RimK-type ligase, ATP-grasp superfamily (LysX) (PDB:1GLV)
Ruegeria pomeroyi DSS-3 402 2.7241E-5 3.24958E-6 9.26197E-6 4.35856E-6 SPO0402 K07391 nan Predicted Mg-chelatase, contains ChlI-like and ATPase domains, YifB family (YifB)
Ruegeria pomeroyi DSS-3 403 3.20826E-5 3.18407E-5 3.83733E-5 4.15187E-5 SPO0403 K00799 nan Glutathione S-transferase (GstA) (PDB:1A0F)
Ruegeria pomeroyi DSS-3 404 2.57428E-5 2.4408E-5 4.76718E-5 4.57649E-5 SPO0404 K02226 Cobalamin biosynthesis, cobyrinate a,c-diamide => cobalamin Broad specificity phosphatase PhoE (PhoE) (PDB:1EBB)
Ruegeria pomeroyi DSS-3 405 1.26248E-5 2.4408E-5 2.05153E-5 SPO0405 K02231 Cobalamin biosynthesis, cobyrinate a,c-diamide => cobalamin Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase (CobU) (PDB:1C9K)
Ruegeria pomeroyi DSS-3 406 SPO0406 K03089 nan DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) (RpoD) (PDB:1SIG)
Ruegeria pomeroyi DSS-3 407 5.01076E-6 1.28754E-5 2.87283E-5 2.40516E-5 SPO0407 nan Putative heme-binding protein PhuW (PhuW) (PDB:2G5G) (PUBMED:16950397)
Ruegeria pomeroyi DSS-3 408 0.001557157 0.00191399 0.00197594 0.001023386 SPO0408 K13038 Coenzyme A biosynthesis, pantothenate => CoA Phosphopantothenoylcysteine synthetase/decarboxylase CoaBC (CoaBC) (PDB:3QJG)
Ruegeria pomeroyi DSS-3 409 5.81911E-5 5.51248E-5 9.33484E-5 5.45542E-5 SPO0409 K01520 Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP dUTP pyrophosphatase (dUTPase) (Dut) (PDB:1DUC)
Ruegeria pomeroyi DSS-3 410 1.03169E-5 6.10199E-6 2.59246E-5 7.40704E-6 SPO0410 K21029 nan Molybdopterin or thiamine biosynthesis adenylyltransferase (ThiF) (PDB:1ZUD) (PUBMED:32239579)
Ruegeria pomeroyi DSS-3 411 SPO0411 nan
Ruegeria pomeroyi DSS-3 412 3.91512E-4 3.56542E-4 6.16498E-4 2.2912E-4 SPO0412 nan
Ruegeria pomeroyi DSS-3 413 1.55884E-4 6.26854E-5 5.45091E-6 SPO0413 nan Cystathionine beta-lyase/cystathionine gamma-synthase (MetC) (PDB:1CL1)
Ruegeria pomeroyi DSS-3 414 7.22281E-4 0.001651098 7.75343E-4 9.0002E-4 SPO0414 K01284 nan Zn-dependent oligopeptidase, M3 family (Dcp) (PDB:5L43) (PUBMED:25239919;31422053)
Ruegeria pomeroyi DSS-3 415 5.40321E-5 8.68818E-5 1.18693E-4 9.03486E-5 SPO0415 K12972 nan Phosphoglycerate dehydrogenase or related dehydrogenase (SerA) (PDB:3OET)
Ruegeria pomeroyi DSS-3 416 1.44902E-6 1.6105E-6 SPO0416 K05837 nan Peptodoglycan polymerase FtsW/RodA/SpoVE (FtsW) (PDB:6BAR) (PUBMED:30692671)
Ruegeria pomeroyi DSS-3 417 1.10175E-5 2.75162E-4 3.10749E-5 1.15825E-5 SPO0417 K05515 nan Cell division protein FtsI, peptidoglycan transpeptidase (Penicillin-binding protein 2) (FtsI) (PDB:6HZQ)
Ruegeria pomeroyi DSS-3 418 SPO0418 K03571 nan
Ruegeria pomeroyi DSS-3 419 2.20731E-5 1.26614E-4 2.00129E-5 2.64877E-5 SPO0419 K03570 nan Cell shape-determining protein MreC (MreC) (PDB:2J5U)
Ruegeria pomeroyi DSS-3 420 4.57649E-4 0.001610597 8.18508E-4 5.3182E-4 SPO0420 K03569 nan Cell shape-determining ATPase MreB, actin-like superfamily (MreB) (PDB:1JCE)
Ruegeria pomeroyi DSS-3 421 3.57702E-5 1.32936E-5 2.52496E-5 2.52496E-5 SPO0421 K07115 nan 23S rRNA A2030 N6-methylase RlmJ (RlmJ) (PDB:2OO3)
Ruegeria pomeroyi DSS-3 422 0.002119684 0.0034032 0.002457331 0.00186064 SPO0422 K01649 Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate Isopropylmalate/homocitrate/citramalate synthases (LeuA) (PDB:4JN6)
Ruegeria pomeroyi DSS-3 423 SPO0423 K23779 nan Mannose-6-phosphate isomerase, cupin superfamily (ManC) (PDB:1IPJ)!!!Transcriptional regulator, contains XRE-family HTH domain (HipB) (PDB:1ADR)
Ruegeria pomeroyi DSS-3 424 SPO0424 nan Predicted arabinose efflux permease AraJ, MFS family (AraJ) (PDB:4LDS)
Ruegeria pomeroyi DSS-3 425 5.16461E-4 0.002479256 5.84622E-4 5.16072E-4 SPO0425 nan Uncharacterized conserved protein
Ruegeria pomeroyi DSS-3 426 4.06909E-4 0.002684357 5.26959E-4 4.69919E-4 SPO0426 nan NH3-dependent NAD+ synthetase (NadE) (PDB:3HMQ)!!!Omega-amidase YafV/Nit2, hydrolyzes alpha-ketoglutaramate (Nit2) (PUBMED:28373563)
Ruegeria pomeroyi DSS-3 427 SPO0427 nan
Ruegeria pomeroyi DSS-3 428 1.23968E-5 5.46613E-6 4.42153E-5 3.88433E-5 SPO0428 nan Glycine/D-amino acid oxidase (deaminating) (DadA) (PDB:3AWI)
Ruegeria pomeroyi DSS-3 429 4.60602E-5 2.4408E-5 7.08618E-6 4.1336E-5 SPO0429 K13075 nan Glyoxylase or a related metal-dependent hydrolase, beta-lactamase superfamily II (GloB) (PDB:1QH3) (PUBMED:25670698)
Ruegeria pomeroyi DSS-3 430 0.002968417 0.002604735 0.003935988 0.00354053 SPO0430 K01885 Heme biosynthesis, plants and bacteria, glutamate => heme Glutamyl- or glutaminyl-tRNA synthetase (GlnS) (PDB:1EUQ)
Ruegeria pomeroyi DSS-3 431 SPO0431 nan Gamma-glutamylcyclotransferase ChaC2 (glutathione degradation) (ChaC2) (PDB:5HWI) (PUBMED:27913623)
Ruegeria pomeroyi DSS-3 432 SPO0432 K13771 nan DNA-binding transcriptional regulator, IscR family (IscR) (PDB:1XD7)
Ruegeria pomeroyi DSS-3 433 1.34346E-5 1.66655E-5 1.0704E-5 5.67965E-6 SPO0433 K02004 nan Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component (YbbP)
Ruegeria pomeroyi DSS-3 434 9.50959E-6 2.03592E-4 3.24911E-5 5.94349E-5 SPO0434 K02003 nan Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component (YbbA)
Ruegeria pomeroyi DSS-3 435 2.60274E-6 6.76714E-5 4.16439E-5 SPO0435 K10804 nan Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK (TesA) (PDB:1BWP)
Ruegeria pomeroyi DSS-3 436 2.67892E-6 SPO0436 nan ssDNA abasic site-binding protein YedK/HMCES, SRAP family (SRAP) (PDB:1ZN6) (PUBMED:30554877;31504793)
Ruegeria pomeroyi DSS-3 437 5.49179E-4 7.40387E-5 0.002508994 7.16086E-4 SPO0437 K03704 nan Cold shock protein, CspA family (CspC) (PDB:1C9O)
Ruegeria pomeroyi DSS-3 438 6.42688E-4 5.68791E-4 4.80903E-4 6.52088E-4 SPO0438 nan Lipoprotein-anchoring transpeptidase ErfK/SrfK (ErfK) (PDB:4LZH)
Ruegeria pomeroyi DSS-3 439 SPO0439 nan
Ruegeria pomeroyi DSS-3 440 2.4408E-5 SPO0440 K10806 nan Acyl-CoA hydrolase (YciA) (PDB:5DM5)
Ruegeria pomeroyi DSS-3 441 SPO0441 nan
Ruegeria pomeroyi DSS-3 442 1.29983E-5 SPO0442 K03672 nan Chaperedoxin CnoX, contains thioredoxin-like and TPR-like domains, YbbN/TrxSC family (CnoX) (PDB:3QDN) (PUBMED:21498507;29754824)
Ruegeria pomeroyi DSS-3 443 SPO0443 nan Rhodanese-related sulfurtransferase (PspE) (PDB:1TQ1)
Ruegeria pomeroyi DSS-3 444 SPO0444 nan
Ruegeria pomeroyi DSS-3 445 SPO0445 K07491 nan REP element-mobilizing transposase RayT (RAYT) (PDB:4ER8)
Ruegeria pomeroyi DSS-3 446 0.00357066 0.012362776 0.004984139 0.004521672 SPO0446 K06020 nan ATPase components of ABC transporters with duplicated ATPase domains (Uup) (PDB:5ZXD)
Ruegeria pomeroyi DSS-3 447 SPO0447 nan Flp pilus assembly protein TadG, includes N-terminal TadE domain (TadG) (PUBMED:12010986)
Ruegeria pomeroyi DSS-3 448 SPO0448 nan N-hydroxylaminopurine reductase YiiM, contains MOSC domain (YiiM) (PDB:1O65) (PUBMED:18312271;29459651)
Ruegeria pomeroyi DSS-3 449 4.38312E-5 3.87772E-5 2.06264E-5 1.63292E-5 SPO0449 K00969 NAD biosynthesis, aspartate => quinolinate => NAD Nicotinate-nucleotide adenylyltransferase NadD (NadD) (PDB:1YUM)
Ruegeria pomeroyi DSS-3 450 SPO0450 K15270 nan Permease of the drug/metabolite transporter (DMT) superfamily (RhaT) (PDB:5I20)
Ruegeria pomeroyi DSS-3 451 9.07919E-5 3.05099E-5 2.17752E-5 9.04228E-5 SPO0451 K07259 nan D-alanyl-D-alanine carboxypeptidase (DacB) (PDB:1W5D)
Ruegeria pomeroyi DSS-3 452 3.17739E-4 2.1032E-4 2.51053E-4 3.00741E-4 SPO0452 nan Tellurite resistance protein TerB (TerB) (PDB:2JXU) (PUBMED:23044854;26778143)
Ruegeria pomeroyi DSS-3 453 SPO0453 nan Cupin domain protein related to quercetin dioxygenase (QdoI) (PDB:2H0V)
Ruegeria pomeroyi DSS-3 454 1.21832E-5 6.10199E-6 7.49732E-6 2.34292E-5 SPO0454 K03566 nan DNA-binding transcriptional regulator, LysR family (LysR) (PDB:2FYI)
Ruegeria pomeroyi DSS-3 455 0.001091343 0.008632489 0.001659562 0.001136774 SPO0455 K04566 nan Lysyl-tRNA synthetase, class I (LysS) (PDB:1IRX)
Ruegeria pomeroyi DSS-3 456 9.153E-5 6.8961E-6 1.93828E-4 6.73014E-5 SPO0456 nan
Ruegeria pomeroyi DSS-3 457 SPO0457 nan
Ruegeria pomeroyi DSS-3 458 SPO0458 nan
Ruegeria pomeroyi DSS-3 459 SPO0459 nan
Ruegeria pomeroyi DSS-3 460 SPO0460 nan
Ruegeria pomeroyi DSS-3 461 4.46701E-5 2.4408E-5 3.15318E-5 6.56913E-5 SPO0461 K03496 nan ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ (ParA) (PDB:6NOO)
Ruegeria pomeroyi DSS-3 462 1.55093E-4 1.33808E-4 1.30515E-4 7.28849E-5 SPO0462 nan Heme-degrading monooxygenase HmoA and related ABM domain proteins (HmoA) (PDB:1IUJ) (PUBMED:21873409)
Ruegeria pomeroyi DSS-3 463 4.068E-5 1.08348E-5 1.6272E-5 3.52559E-5 SPO0463 K14061 nan Nucleotide-binding universal stress protein,  UspA family (UspA) (PDB:1JMV)
Ruegeria pomeroyi DSS-3 464 SPO0464 nan
Ruegeria pomeroyi DSS-3 465 SPO0465 K07226 nan Putative heme iron utilization protein, contains PNPOx domain (HugZ) (PDB:1VL7)
Ruegeria pomeroyi DSS-3 466 SPO0466 nan Formate/nitrite transporter FocA, FNT family (FocA) (PDB:3KCU)
Ruegeria pomeroyi DSS-3 467 5.37094E-6 SPO0467 K02043 nan DNA-binding transcriptional regulator, GntR family (MngR) (PDB:2WV0)
Ruegeria pomeroyi DSS-3 468 3.63695E-6 3.63695E-6 SPO0468 K06166 nan Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnG (PhnG) (PDB:4XB6)
Ruegeria pomeroyi DSS-3 469 SPO0469 K06165 nan Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnH (PhnH) (PDB:2FSU)
Ruegeria pomeroyi DSS-3 470 SPO0470 K06164 nan Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnI (PhnI)
Ruegeria pomeroyi DSS-3 471 SPO0471 K06163 nan Alpha-D-ribose 1-methylphosphonate 5-phosphate C-P lyase PhnJ (PhnJ) (PDB:4XB6)
Ruegeria pomeroyi DSS-3 472 SPO0472 K05781 nan ABC-type phosphonate transport system, ATPase component PhnK (PhnK) (PUBMED:19516334)
Ruegeria pomeroyi DSS-3 473 SPO0473 K05780 nan Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL (PhnL)
Ruegeria pomeroyi DSS-3 474 1.20699E-5 SPO0474 K05774 nan Ribose 1,5-bisphosphate kinase PhnN (PhnN)
Ruegeria pomeroyi DSS-3 475 9.67716E-6 2.4408E-5 SPO0475 K05774 nan
Ruegeria pomeroyi DSS-3 476 2.31233E-5 3.99403E-5 5.78083E-6 5.78083E-6 SPO0476 K06162 nan Alpha-D-ribose 1-methylphosphonate 5-triphosphate diphosphatase PhnM (PhnM)
Ruegeria pomeroyi DSS-3 477 SPO0477 nan
Ruegeria pomeroyi DSS-3 478 SPO0478 nan
Ruegeria pomeroyi DSS-3 479 SPO0479 K07488 nan Transposase InsA (InsA)
Ruegeria pomeroyi DSS-3 480 SPO_tRNA-Arg-2 nan
Ruegeria pomeroyi DSS-3 481 SPO0481 K03829 nan Ribosomal protein S18 acetylase RimI and related acetyltransferases (RimI) (PDB:1GHE)
Ruegeria pomeroyi DSS-3 482 0.002476637 5.25079E-4 0.003714511 0.002266029 SPO0482 K03937 NADH dehydrogenase (ubiquinone) Fe-S protein/flavoprotein complex, mitochondria
Ruegeria pomeroyi DSS-3 483 4.08691E-5 2.4408E-5 1.08559E-4 3.4909E-5 SPO0483 nan Phage tail collar domain (MdpB) (PDB:1OCY) (PUBMED:16554069;29204885)
Ruegeria pomeroyi DSS-3 484 0.016460657 0.03886356 0.02271574 0.010892702 SPO0484 K02886 nan Ribosomal protein L2 (RplB) (PDB:1VS6)
Ruegeria pomeroyi DSS-3 485 0.002393704 0.001322097 0.004469043 0.002733956 SPO0485 K02965 nan Ribosomal protein S19 (RpsS) (PDB:4V4H)
Ruegeria pomeroyi DSS-3 486 0.001067848 3.65411E-4 0.003751269 9.02222E-4 SPO0486 K02890 nan Ribosomal protein L22 (RplV) (PDB:1VS6)
Ruegeria pomeroyi DSS-3 487 0.008554338 0.013039588 0.007339523 0.01201728 SPO0487 K02982 nan Ribosomal protein S3 (RpsC) (PDB:1VS6)
Ruegeria pomeroyi DSS-3 488 0.0027018 0.004335924 0.003705287 0.004116837 SPO0488 K02878 nan Ribosomal protein L16/L10AE (RplP) (PDB:1WKI)
Ruegeria pomeroyi DSS-3 489 SPO0489 nan
Ruegeria pomeroyi DSS-3 490 1.64919E-6 SPO0490 nan
Ruegeria pomeroyi DSS-3 491 6.34291E-6 SPO0491 nan Ectoine hydroxylase-related dioxygenase, phytanoyl-CoA dioxygenase (PhyH) family (PhyH) (PDB:2A1X)
Ruegeria pomeroyi DSS-3 492 7.71575E-5 1.29219E-6 4.0848E-5 SPO0491a nan
Ruegeria pomeroyi DSS-3 493 SPO0492 nan cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases (Crp) (PDB:1FT9)
Ruegeria pomeroyi DSS-3 494 7.07276E-4 0.001383117 0.001139962 0.001237039 SPO0493 K02904 nan Ribosomal protein L29 (RpmC) (PDB:1VS6)
Ruegeria pomeroyi DSS-3 495 0.002272589 4.24551E-4 0.001324774 1.49338E-4 SPO0494 K02961 nan Ribosomal protein S17 (RpsQ) (PDB:4V4H)
Ruegeria pomeroyi DSS-3 496 0.003286071 0.003123921 0.005668846 0.00359217 SPO0495 K02874 nan Ribosomal protein L14 (RplN) (PDB:4V4H)
Ruegeria pomeroyi DSS-3 497 0.002628594 6.75876E-4 0.003806929 0.004187267 SPO0496 K02895 nan Ribosomal protein L24 (RplX) (PDB:1VS6)
Ruegeria pomeroyi DSS-3 498 0.003019008 0.002099274 0.005658117 0.003550963 SPO0497 K02931 nan Ribosomal protein L5 (RplE) (PDB:1VS6)
Ruegeria pomeroyi DSS-3 499 0.001731817 0.002115105 0.008710738 0.002967016 SPO0498 K02954 nan Ribosomal protein S14 (RpsN) (PDB:4V4H)
Ruegeria pomeroyi DSS-3 500 0.002302327 0.002680105 0.003307747 0.003204952 SPO0499 K02994 nan Ribosomal protein S8 (RpsH) (PDB:4V4H)
Ruegeria pomeroyi DSS-3 501 0.00815391 0.006272035 0.011806829 0.003235088 SPO0500 K02933 nan Ribosomal protein L6P/L9E (RplF) (PDB:1VS6)
Ruegeria pomeroyi DSS-3 502 0.00160831 0.001757145 0.004936457 0.001910589 SPO0501 K02881 nan Ribosomal protein L18 (RplR) (PDB:1VS6)
Ruegeria pomeroyi DSS-3 503 0.00463189 0.00824377 0.006918691 0.005924388 SPO0502 K02988 nan Ribosomal protein S5 (RpsE) (PDB:4V4H)
Ruegeria pomeroyi DSS-3 504 0.001718399 8.91201E-4 0.004310759 0.002412254 SPO0503 K02907 nan Ribosomal protein L30/L7E (RpmD) (PDB:1VS6)
Ruegeria pomeroyi DSS-3 505 0.001796107 0.002446729 0.0011355 0.001338016 SPO0504 nan
Ruegeria pomeroyi DSS-3 506 2.47894E-5 1.34274E-6 3.68662E-5 9.53437E-6 SPO0504a nan
Ruegeria pomeroyi DSS-3 507 0.024599368 0.007936735 0.03878066 0.020038616 SPO0505 K02876 nan Ribosomal protein L15 (RplO) (PDB:1VS6)
Ruegeria pomeroyi DSS-3 508 6.81947E-5 1.14889E-4 1.44839E-5 3.33933E-5 SPO0506 K03076 nan Preprotein translocase subunit SecY (SecY) (PDB:1RH5)
Ruegeria pomeroyi DSS-3 509 9.41081E-4 9.88347E-4 0.001455883 0.001214381 SPO0507 K00939 Adenine ribonucleotide biosynthesis, IMP => ADP,ATP Adenylate kinase or related kinase (Adk) (PDB:1AK2)
Ruegeria pomeroyi DSS-3 510 5.66164E-6 3.84579E-5 1.53832E-6 SPO0508 nan Predicted dienelactone hydrolase
Ruegeria pomeroyi DSS-3 511 0.016567647 0.009173321 0.006983275 0.00571086 SPO0509 K02952 nan Ribosomal protein S13 (RpsM) (PDB:4V4H)
Ruegeria pomeroyi DSS-3 512 0.008639007 0.005481427 0.009668365 0.006033927 SPO0510 K02948 nan Ribosomal protein S11 (RpsK) (PDB:4V4H)
Ruegeria pomeroyi DSS-3 513 0.01139465 0.02488012 0.017054332 0.009226639 SPO0511 K03040 nan DNA-directed RNA polymerase, alpha subunit/40 kD subunit (RpoA) (PDB:4KN7)
Ruegeria pomeroyi DSS-3 514 0.004589566 0.004095521 0.036326878 0.002419002 SPO0512 K02879 nan Ribosomal protein L17 (RplQ) (PDB:1GD8)
Ruegeria pomeroyi DSS-3 515 1.6272E-5 SPO0513 nan
Ruegeria pomeroyi DSS-3 516 1.45652E-4 6.95878E-4 1.93009E-4 1.18193E-4 SPO0514 K04771 nan Periplasmic serine protease, S1-C subfamily, contain C-terminal PDZ domain (DegQ) (PDB:2HGA) (PUBMED:29686141)
Ruegeria pomeroyi DSS-3 517 3.13458E-5 7.10004E-5 1.21204E-5 5.01533E-6 SPO0515 K07478 nan Replication-associated recombination protein RarA (DNA-dependent ATPase) (RarA) (PDB:3PVS)
Ruegeria pomeroyi DSS-3 518 9.25847E-5 7.44477E-5 2.63775E-5 4.53692E-5 SPO0516 K06179 nan Pseudouridine synthase RluA, 23S rRNA- or tRNA-specific (RluA) (PDB:2I82)
Ruegeria pomeroyi DSS-3 519 9.85074E-6 2.21642E-5 6.15672E-6 SPO0517 K01091 nan Phosphoglycolate phosphatase, HAD superfamily (Gph) (PDB:2NYV)
Ruegeria pomeroyi DSS-3 520 9.80675E-5 1.1107E-5 1.89213E-4 2.23056E-5 SPO0518 K07556 nan Mitochondrial FoF1-type ATP synthase assembly chaperone ATP12 (Atp12) (PDB:2P4X)
Ruegeria pomeroyi DSS-3 521 0.102263615 0.2248151 0.16645178 0.073708 SPO0519 K09969 nan ABC-type amino acid transport/signal transduction system, periplasmic component/domain (HisJ) (PDB:1GGG)
Ruegeria pomeroyi DSS-3 522 2.66781E-5 1.22548E-4 1.17123E-5 4.07763E-5 SPO0520 K09970 nan ABC-type amino acid transport system, permease component (BatB)
Ruegeria pomeroyi DSS-3 523 1.13732E-4 3.10767E-4 7.5402E-5 1.35305E-4 SPO0521 K09971 nan ABC-type amino acid transport system, permease component (HisM) (PDB:4YMS)
Ruegeria pomeroyi DSS-3 524 0.002548566 0.005585391 0.00352268 0.002356806 SPO0522 K09972 nan ABC-type polar amino acid transport system, ATPase component (GlnQ) (PDB:4YMS)
Ruegeria pomeroyi DSS-3 525 2.42093E-4 1.49328E-4 8.12395E-5 3.68286E-5 SPO0523 K08296 nan Phosphohistidine phosphatase SixA (SixA) (PDB:1UJB)
Ruegeria pomeroyi DSS-3 526 2.60274E-6 SPO0524 nan Epoxyqueuosine reductase QueG (queuosine biosynthesis) (QueG) (PDB:5D08) (PUBMED:2150253)
Ruegeria pomeroyi DSS-3 527 SPO0525 nan Sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily (ERG3) (PDB:4ZR0)
Ruegeria pomeroyi DSS-3 528 3.31038E-4 0.001254051 3.83979E-4 5.87449E-4 SPO0526 K00930 Ornithine biosynthesis, glutamate => ornithine N-acetylglutamate kinase (ArgB) (PDB:3S6G)
Ruegeria pomeroyi DSS-3 529 1.56139E-4 4.18661E-4 2.168E-4 2.78538E-4 SPO0527 nan NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family (FabG) (PDB:6L1H)
Ruegeria pomeroyi DSS-3 530 4.72412E-6 SPO0528 nan PepSY-associated TM region (PiuB) (PUBMED:15124630)
Ruegeria pomeroyi DSS-3 531 SPO0529 nan
Ruegeria pomeroyi DSS-3 532 6.32694E-6 3.20458E-5 4.21797E-5 6.32694E-6 SPO0530 K03978 nan GTP-binding protein EngB required for normal cell division (EngB) (PDB:5UCV)
Ruegeria pomeroyi DSS-3 533 3.31749E-4 3.09169E-4 2.52548E-4 2.09211E-4 SPO0531 nan N-hydroxylaminopurine reductase subunit YcbX, contains MOSC domain (YcbX) (PUBMED:18312271;20118259)
Ruegeria pomeroyi DSS-3 534 2.81804E-4 0.002752123 2.46184E-4 2.96382E-4 SPO0532 K03217 nan Membrane protein insertase Oxa1/YidC/SpoIIIJ (YidC) (PDB:3WO6)
Ruegeria pomeroyi DSS-3 535 SPO0533 K21023 nan GGDEF domain, diguanylate cyclase (c-di-GMP synthetase) or its enzymatically inactive variants (GGDEF) (PDB:6D9M)!!!EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant) (EAL) (PDB:2BAS)
Ruegeria pomeroyi DSS-3 536 1.21417E-5 3.66805E-6 8.71713E-6 3.36232E-5 SPO0534 K14058 nan tRNA(Ile)-lysidine synthase TilS/MesJ (TilS) (PDB:1NI5) (PUBMED:21435031)
Ruegeria pomeroyi DSS-3 537 SPO0535 K07301 nan Ca2+/Na+ antiporter (ECM27) (PDB:3V5S)
Ruegeria pomeroyi DSS-3 538 SPO0536 K08998 nan Membrane-anchored protein YidD, putatitve component of membrane protein insertase Oxa1/YidC/SpoIIIJ (YidD)
Ruegeria pomeroyi DSS-3 539 3.89489E-6 SPO0537 K03536 nan RNase P protein component (RnpA) (PDB:1A6F)
Ruegeria pomeroyi DSS-3 540 1.08342E-4 SPO0538 K02914 nan Ribosomal protein L34 (RpmH) (PDB:6SPB)
Ruegeria pomeroyi DSS-3 541 SPO0539 nan Uncharacterized membrane protein YdjX, related to fungal oxalate transporter, TVP38/TMEM64 family (TVP38) (PUBMED:20889782)
Ruegeria pomeroyi DSS-3 542 1.04716E-5 4.7401E-5 4.65406E-6 1.86162E-5 SPO0540 nan Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex or glutathione oxidoreductase (Lpd) (PDB:6QKG)
Ruegeria pomeroyi DSS-3 543 3.6334E-5 1.22806E-4 5.00337E-5 6.4329E-5 SPO0541 nan Signal transduction histidine kinase (BaeS) (PDB:1JOY)
Ruegeria pomeroyi DSS-3 544 SPO_tRNA-Arg-3 nan
Ruegeria pomeroyi DSS-3 545 3.29244E-6 1.13938E-6 1.31698E-6 1.27308E-5 SPO0543 K21060 Hydroxyproline degradation, trans-4-hydroxy-L-proline => 2-oxoglutarate Glycine/D-amino acid oxidase (deaminating) (DadA) (PDB:3AWI)
Ruegeria pomeroyi DSS-3 546 6.77163E-7 SPO0544 K00315 nan Glycine cleavage system protein T (aminomethyltransferase) (GcvT) (PDB:2GAH) (PUBMED:25433025;25505271)!!!Glycine/D-amino acid oxidase (deaminating) (DadA) (PDB:3AWI)
Ruegeria pomeroyi DSS-3 547 2.56959E-4 5.66817E-4 3.02098E-4 1.32793E-4 SPO0545 K03702 nan Excinuclease UvrABC helicase subunit UvrB (UvrB) (PDB:1C4O)
Ruegeria pomeroyi DSS-3 548 SPO0546 nan
Ruegeria pomeroyi DSS-3 549 SPO0547 K07491 nan REP element-mobilizing transposase RayT (RAYT) (PDB:4ER8)
Ruegeria pomeroyi DSS-3 550 SPO0548 nan
Ruegeria pomeroyi DSS-3 551 3.26892E-6 4.7401E-5 1.17681E-4 4.08616E-5 SPO0549 nan
Ruegeria pomeroyi DSS-3 552 8.64849E-6 8.64849E-6 2.16212E-6 SPO0550 nan Predicted glycosyl transferase
Ruegeria pomeroyi DSS-3 553 1.88373E-5 5.51922E-6 1.16405E-4 3.71915E-5 SPO0551 nan Predicted glycosyl transferase
Ruegeria pomeroyi DSS-3 554 5.80318E-5 1.34274E-6 3.39698E-5 9.15295E-5 SPO0552 K02226 Cobalamin biosynthesis, cobyrinate a,c-diamide => cobalamin Broad specificity phosphatase PhoE (PhoE) (PDB:1EBB)
Ruegeria pomeroyi DSS-3 555 3.82436E-6 2.4408E-5 8.66855E-6 1.52974E-5 SPO0553 nan Glycosyltransferase involved in cell wall bisynthesis (RfaB) (PDB:2IV7)
Ruegeria pomeroyi DSS-3 556 2.65304E-5 1.97298E-4 4.04589E-5 2.12243E-5 SPO0554 K16703 nan Glycosyltransferase involved in cell wall bisynthesis (RfaB) (PDB:2IV7)
Ruegeria pomeroyi DSS-3 557 1.01272E-4 1.63643E-4 5.16554E-5 1.76263E-4 SPO0555 nan Predicted glycosyl transferase
Ruegeria pomeroyi DSS-3 558 5.60515E-5 6.19814E-4 4.78642E-5 7.51551E-5 SPO0556 K02474 nan UDP-N-acetyl-D-mannosaminuronate dehydrogenase (WecC) (PDB:3OJL)
Ruegeria pomeroyi DSS-3 559 2.06532E-4 2.35529E-4 1.305E-4 2.02601E-4 SPO0557 K22044 nan Small-conductance mechanosensitive channel (MscS) (PDB:2OAU)
Ruegeria pomeroyi DSS-3 560 1.43389E-6 1.20846E-5 SPO0558 K02034 nan ABC-type dipeptide/oligopeptide/nickel transport system, permease component (DppC)
Ruegeria pomeroyi DSS-3 561 SPO0559 K02033 nan ABC-type dipeptide/oligopeptide/nickel transport system, permease component (DppB)
Ruegeria pomeroyi DSS-3 562 0.001312262 0.001751613 0.001316709 0.001222023 SPO0560 K02035 nan ABC-type transport system, periplasmic component (DdpA) (PDB:3RQT)
Ruegeria pomeroyi DSS-3 563 3.39747E-4 1.49273E-4 4.79368E-4 2.42321E-4 SPO0561 K02032 nan ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain (GsiA)
Ruegeria pomeroyi DSS-3 564 1.98403E-4 1.65277E-4 4.71934E-4 2.29618E-4 SPO0562 nan
Ruegeria pomeroyi DSS-3 565 2.62765E-6 1.29983E-5 2.62765E-6 SPO0563 K00799 nan Glutathione S-transferase (GstA) (PDB:1A0F)
Ruegeria pomeroyi DSS-3 566 1.71191E-6 2.82323E-5 3.19556E-6 6.84763E-6 SPO0564 K00315 nan Glycine cleavage system protein T (aminomethyltransferase) (GcvT) (PDB:2GAH) (PUBMED:25433025;25505271)!!!Glycine/D-amino acid oxidase (deaminating) (DadA) (PDB:3AWI)
Ruegeria pomeroyi DSS-3 567 SPO0565 K14083 Methanogenesis, methylamine/dimethylamine/trimethylamine => methane Trimethylamine:corrinoid methyltransferase (MttB2)
Ruegeria pomeroyi DSS-3 568 9.73721E-7 SPO0566 nan DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA (AcrR) (PDB:2QOP)
Ruegeria pomeroyi DSS-3 569 2.59404E-5 1.57588E-5 2.59404E-5 1.22321E-5 SPO0567 K00303 nan Glycine/D-amino acid oxidase (deaminating) (DadA) (PDB:3AWI)
Ruegeria pomeroyi DSS-3 570 SPO0568 K04090 nan Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, gamma subunit (PorG) (PDB:1B0P)!!!TPP-dependent indolepyruvate ferredoxin oxidoreductase, alpha subunit (IorA)
Ruegeria pomeroyi DSS-3 571 3.61302E-6 3.61302E-6 SPO0569 K03719 nan DNA-binding transcriptional regulator, Lrp family (Lrp) (PDB:1I1G)
Ruegeria pomeroyi DSS-3 572 SPO0570 nan
Ruegeria pomeroyi DSS-3 573 3.38373E-7 1.18155E-5 5.41396E-6 3.27093E-6 SPO0571 nan Uncharacterized conserved protein, PKD repeat domain (PDB:2KZW)
Ruegeria pomeroyi DSS-3 574 9.61784E-7 3.66805E-6 3.84714E-6 9.61784E-7 SPO0572 K01768 nan Methyl-accepting chemotaxis protein (MCP) (Tar) (PDB:1QU7)!!!Adenylate cyclase, class 3 (AcyC) (PDB:1AB8)
Ruegeria pomeroyi DSS-3 575 SPO0573 nan
Ruegeria pomeroyi DSS-3 576 1.58581E-4 0.001149208 1.37649E-4 1.62838E-4 SPO0574 K02021 nan cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases (Crp) (PDB:1FT9)!!!ABC-type multidrug transport system, ATPase and permease component (MdlB) (PDB:2HYD)
Ruegeria pomeroyi DSS-3 577 7.13217E-6 6.10199E-6 1.28379E-5 1.42644E-6 SPO0575 K00249 beta-Oxidation Acyl-CoA dehydrogenase related to the alkylation response protein AidB (CaiA) (PDB:1BUC)
Ruegeria pomeroyi DSS-3 578 2.62765E-6 5.37094E-6 2.62765E-6 SPO0576 nan DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA (AcrR) (PDB:2QOP)
Ruegeria pomeroyi DSS-3 579 SPO0577 nan
Ruegeria pomeroyi DSS-3 580 4.07554E-6 2.54721E-6 SPO0578 K13778 nan Acetyl-CoA carboxylase, carboxyltransferase component (MmdA) (PDB:1OD2)
Ruegeria pomeroyi DSS-3 581 3.32836E-6 1.26608E-5 2.49627E-6 2.49627E-6 SPO0579 K13777 nan Acetyl/propionyl-CoA carboxylase, alpha subunit (PccA) (PDB:3U9S)
Ruegeria pomeroyi DSS-3 582 5.84233E-6 5.84233E-6 1.31452E-5 SPO0580 K00459 nan NAD(P)H-dependent flavin oxidoreductase YrpB, nitropropane dioxygenase family (YrpB)
Ruegeria pomeroyi DSS-3 583 1.04407E-5 2.68895E-5 2.29695E-5 1.46169E-5 SPO0581 nan
Ruegeria pomeroyi DSS-3 584 4.35064E-5 6.90185E-5 2.04456E-5 3.94648E-5 SPO0582 K00249 beta-Oxidation Acyl-CoA dehydrogenase related to the alkylation response protein AidB (CaiA) (PDB:1BUC)
Ruegeria pomeroyi DSS-3 585 SPO0583 K03566 nan DNA-binding transcriptional regulator, LysR family (LysR) (PDB:2FYI)
Ruegeria pomeroyi DSS-3 586 2.27051E-5 5.87329E-5 SPO0584 K00812 nan Aspartate/methionine/tyrosine aminotransferase (AspB) (PDB:2O0R)
Ruegeria pomeroyi DSS-3 587 8.64588E-5 2.11052E-4 7.00079E-5 5.78864E-5 SPO0585 K11381 Leucine degradation, leucine => acetoacetate + acetyl-CoA Pyruvate/2-oxoglutarate/acetoin dehydrogenase complex, dehydrogenase (E1) component, beta subunit (AcoB) (PDB:2OZL)!!!TPP-dependent pyruvate or acetoin dehydrogenase subunit alpha (AcoA) (PDB:1DTW)
Ruegeria pomeroyi DSS-3 588 4.85506E-5 2.24031E-5 4.77547E-5 5.35914E-5 SPO0586 nan Malonyl CoA-acyl carrier protein transacylase (FabD) (PDB:1YXC)
Ruegeria pomeroyi DSS-3 589 4.71648E-5 7.97992E-5 5.42718E-5 5.38411E-5 SPO0587 K09471 GABA biosynthesis, prokaryotes, putrescine => GABA Glycine/D-amino acid oxidase (deaminating) (DadA) (PDB:3AWI)
Ruegeria pomeroyi DSS-3 590 SPO0588 K18297 Imipenem resistance, repression of porin OprD DNA-binding transcriptional regulator, LysR family (LysR) (PDB:2FYI)
Ruegeria pomeroyi DSS-3 591 SPO0589 K18979 nan Ferredoxin (Fdx) (PDB:1KRH)!!!Flavodoxin/ferredoxin--NADP reductase (Fpr) (PDB:3OZU)!!!Epoxyqueuosine reductase QueG (queuosine biosynthesis) (QueG) (PDB:5D08) (PUBMED:2150253)
Ruegeria pomeroyi DSS-3 592 1.36492E-5 4.54807E-6 8.02895E-6 1.39168E-5 SPO0590 K02529 nan DNA-binding transcriptional regulator, LacI/PurR family (PurR) (PDB:1BDH)
Ruegeria pomeroyi DSS-3 593 3.89489E-6 3.60354E-6 SPO0591 K21395 nan TRAP-type C4-dicarboxylate transport system, periplasmic component (DctP) (PDB:2CEX)
Ruegeria pomeroyi DSS-3 594 SPO0592 K21394 nan TRAP-type C4-dicarboxylate transport system, small permease component YiaM (DctM)
Ruegeria pomeroyi DSS-3 595 SPO0593 K11690 nan TRAP-type C4-dicarboxylate transport system, large permease component (DctQ)
Ruegeria pomeroyi DSS-3 596 1.26248E-6 SPO0594 K15509 nan Histidinol dehydrogenase (HisD) (PDB:1K75)
Ruegeria pomeroyi DSS-3 597 SPO0595 nan NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family (FabG) (PDB:6L1H)
Ruegeria pomeroyi DSS-3 598 SPO0596 nan Threonine dehydrogenase or related Zn-dependent dehydrogenase (Tdh) (PDB:4A2C)
Ruegeria pomeroyi DSS-3 599 SPO0597 K14061 nan Nucleotide-binding universal stress protein,  UspA family (UspA) (PDB:1JMV)
Ruegeria pomeroyi DSS-3 600 SPO0598 K15054 nan FMN-dependent dehydrogenase, includes L-lactate dehydrogenase and type II isopentenyl diphosphate isomerase (LldD) (PDB:6AI7)
Ruegeria pomeroyi DSS-3 601 3.11591E-5 1.5255E-4 9.73722E-6 1.7527E-5 SPO0599 K01480 Polyamine biosynthesis, arginine => agmatine => putrescine => spermidine Arginase/agmatinase family enzyme (SpeB) (PDB:1CEV)
Ruegeria pomeroyi DSS-3 602 5.64708E-5 2.17804E-4 5.41177E-5 6.40003E-5 SPO0600 K13747 nan Diaminopimelate decarboxylase (LysA) (PDB:1D7K)
Ruegeria pomeroyi DSS-3 603 0.001832186 0.005416024 0.001752466 0.001132426 SPO0601 K00290 Lysine biosynthesis, AAA pathway, 2-oxoglutarate => 2-aminoadipate => lysine Saccharopine dehydrogenase, NADP-dependent (Lys9) (PDB:1E5L)
Ruegeria pomeroyi DSS-3 604 2.99099E-5 1.74924E-4 5.4004E-6 1.19086E-5 SPO0602 nan Arginine decarboxylase (spermidine biosynthesis) (SpeA) (PDB:3N2O)
Ruegeria pomeroyi DSS-3 605 SPO0603 nan
Ruegeria pomeroyi DSS-3 606 SPO0604 nan
Ruegeria pomeroyi DSS-3 607 SPO0605 nan DNA-binding transcriptional regulator, MarR family (MarR) (PDB:1JGS)
Ruegeria pomeroyi DSS-3 608 9.77187E-7 SPO0606 K09123 nan Mevalonate 5-phosphate dehydratase subunit 1, aconitase superfamily (modified mevalonate pathway) (AcnX1) (PUBMED:30224495)!!!Mevalonate 5-phosphate dehydratase subunit 2, swiveling domain (modified mevalonate pathway) (AcnX2) (PDB:2HI6) (PUBMED:30224495)
Ruegeria pomeroyi DSS-3 609 SPO0607 K22548 nan Proline racemase/hydroxyproline epimerase (PrdF) (PDB:1TM0) (PUBMED:17849014)
Ruegeria pomeroyi DSS-3 610 3.3396E-5 0.008437552 1.02043E-5 5.72061E-5 SPO0608 K17321 nan ABC-type glycerol-3-phosphate transport system, periplasmic component (UgpB) (PDB:2Z8D)
Ruegeria pomeroyi DSS-3 611 2.4408E-5 SPO0609 K17324 nan ABC-type sugar transport system, ATPase component MalK (MalK) (PDB:2ONK)
Ruegeria pomeroyi DSS-3 612 1.74924E-4 7.60634E-6 SPO0610 K17325 nan ABC-type sugar transport system, ATPase component MalK (MalK) (PDB:2ONK)
Ruegeria pomeroyi DSS-3 613 SPO0611 K17322 nan ABC-type sugar transport system, permease component (UgpA) (PDB:3FH6)
Ruegeria pomeroyi DSS-3 614 SPO0612 K17323 nan ABC-type glycerol-3-phosphate transport system, permease component (UgpE) (PDB:1VR4)
Ruegeria pomeroyi DSS-3 615 SPO0613 nan Predicted small integral membrane protein (PUBMED:15071504)
Ruegeria pomeroyi DSS-3 616 4.05246E-5 4.19221E-6 SPO0614 K02171 beta-Lactam resistance, Bla system Transcriptional regulator, CopY/TcrY family (CopY) (PDB:1OKR)
Ruegeria pomeroyi DSS-3 617 SPO0615 nan Signal transducer regulating beta-lactamase production, contains metallopeptidase domain (MecR1)
Ruegeria pomeroyi DSS-3 618 7.07276E-5 3.04115E-5 4.88159E-5 8.98655E-5 SPO0616 K00344 nan NADPH:quinone reductase or related Zn-dependent oxidoreductase (Qor) (PDB:2VCY)
Ruegeria pomeroyi DSS-3 619 SPO_tRNA-Gln-2 nan
Ruegeria pomeroyi DSS-3 620 6.3124E-6 SPO0618 nan AraC-type DNA-binding domain and AraC-containing proteins (AraC) (PDB:1BL0)
Ruegeria pomeroyi DSS-3 621 SPO0619 K00227 Cholesterol biosynthesis, squalene 2,3-epoxide => cholesterol Sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily (ERG3) (PDB:4ZR0)
Ruegeria pomeroyi DSS-3 622 SPO0620 nan Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG (UbiE) (PDB:4OBW)
Ruegeria pomeroyi DSS-3 623 SPO0621 nan Ankyrin repeat (ANKYR) (PDB:6AUN)
Ruegeria pomeroyi DSS-3 624 SPO0622 K07486 nan Transposase
Ruegeria pomeroyi DSS-3 625 SPO0623 nan Heme/copper-type cytochrome/quinol oxidase, subunit 1 (CyoB) (PDB:1AR1)
Ruegeria pomeroyi DSS-3 626 SPO0624 nan Predicted kinase (PDB:4GP6)
Ruegeria pomeroyi DSS-3 627 SPO0628 K07497 nan Transposase InsO and inactivated derivatives (Tra5)!!!Transposase InsE and inactivated derivatives (InsE) (PDB:2JN6) (PUBMED:23818957)
Ruegeria pomeroyi DSS-3 628 2.51013E-4 1.84789E-4 3.18043E-4 2.41306E-4 SPO0628a nan
Ruegeria pomeroyi DSS-3 629 SPO0629 K07488 nan Transposase and inactivated derivatives (PUBMED:22399070)
Ruegeria pomeroyi DSS-3 630 SPO0631 nan SH3-like domain (SH3)
Ruegeria pomeroyi DSS-3 631 0.004415198 0.002334149 0.003831974 0.003197405 SPO0632 K00015 nan Lactate dehydrogenase or related 2-hydroxyacid dehydrogenase (LdhA) (PDB:1DXY)
Ruegeria pomeroyi DSS-3 632 0.001399164 0.008221411 0.002545357 0.001032125 SPO0633 K00681 nan Gamma-glutamyltranspeptidase (Ggt) (PDB:2Z8I) (PUBMED:16618936)
Ruegeria pomeroyi DSS-3 633 1.18103E-6 4.04294E-6 1.18103E-6 SPO0634 K00102 nan FAD/FMN-containing lactate dehydrogenase/glycolate oxidase (GlcD) (PDB:1AHU)
Ruegeria pomeroyi DSS-3 634 7.6622E-4 0.001979466 1.57409E-4 5.56194E-4 SPO0635 K00315 nan Glycine cleavage system protein T (aminomethyltransferase) (GcvT) (PDB:2GAH) (PUBMED:25433025;25505271)!!!Glycine/D-amino acid oxidase (deaminating) (DadA) (PDB:3AWI)
Ruegeria pomeroyi DSS-3 635 SPO0636 nan
Ruegeria pomeroyi DSS-3 636 SPO0637 nan
Ruegeria pomeroyi DSS-3 637 SPO0638 nan Predicted HD phosphohydrolase (PDB:4MLN)
Ruegeria pomeroyi DSS-3 638 SPO0639 K23773 nan DNA-binding transcriptional regulator, LysR family (LysR) (PDB:2FYI)
Ruegeria pomeroyi DSS-3 639 SPO0640 K01607 nan Uncharacterized conserved protein YurZ, alkylhydroperoxidase/carboxymuconolactone decarboxylase family (YurZ) (PDB:3BEY)
Ruegeria pomeroyi DSS-3 640 1.65263E-5 4.27139E-5 4.32225E-5 6.35624E-5 SPO0641 nan Protein-L-isoaspartate O-methyltransferase (Pcm) (PDB:3LBF) (PUBMED:24909784)
Ruegeria pomeroyi DSS-3 641 8.7159E-5 1.14255E-4 1.54778E-4 6.42765E-5 SPO0642 K19746 D-Arginine racemization, D-arginine => L-arginine Glycine/D-amino acid oxidase (deaminating) (DadA) (PDB:3AWI)
Ruegeria pomeroyi DSS-3 642 2.55228E-4 0.001005738 3.48517E-4 4.71144E-4 SPO0643 nan Pyridoxal reductase PdxI or related oxidoreductase, aldo/keto reductase family (PdxI) (PDB:1LQA) (PUBMED:32253339)
Ruegeria pomeroyi DSS-3 643 2.49273E-4 1.5255E-4 5.37494E-4 5.60864E-4 SPO0644 nan
Ruegeria pomeroyi DSS-3 644 8.08439E-4 3.67396E-4 0.00109658 8.70866E-4 SPO0645 nan Multidrug resistance efflux pump EmrA (EmrA) (PDB:4TKO)
Ruegeria pomeroyi DSS-3 645 SPO0646 nan
Ruegeria pomeroyi DSS-3 646 5.43741E-6 SPO0647 nan
Ruegeria pomeroyi DSS-3 647 0.003880403 0.004360491 0.005261554 0.002242865 SPO0648 K07335 nan Lipoprotein Med, regulator of KinD/Spo0A, PBP1-ABC superfamily, includes NupN (Med) (PDB:2FQW) (PUBMED:21622736)
Ruegeria pomeroyi DSS-3 648 SPO0649 K23536 nan ABC-type guanosine uptake system NupNOPQ, permease subunit NupQ (NupQ) (PUBMED:21926227)
Ruegeria pomeroyi DSS-3 649 SPO0650 K23535 nan ABC-type guanosine uptake system NupNOPQ, permease component NupP (NupP) (PUBMED:21926227)
Ruegeria pomeroyi DSS-3 650 7.39487E-5 4.14209E-4 7.86612E-5 8.80861E-5 SPO0651 K23537 nan ABC-type guanosine uptake system NupNOPQ, ATPase component NupO (NupO) (PUBMED:21926227)
Ruegeria pomeroyi DSS-3 651 6.10199E-6 SPO0652 K07402 nan Molybdoenzyme maturation factor PaoD (Mo cofactor insertion), XdhC/CoxF family (XdhC) (PDB:2WE7) (PUBMED:24498065)
Ruegeria pomeroyi DSS-3 652 7.07705E-7 1.27496E-5 4.01033E-6 2.83082E-6 SPO0653 K13482 Purine degradation, xanthine => urea Xanthine dehydrogenase, molybdopterin-binding subunit XdhB (XdhB)
Ruegeria pomeroyi DSS-3 653 5.95639E-6 1.41115E-5 5.95639E-6 2.9782E-6 SPO0654 K13481 Purine degradation, xanthine => urea Xanthine dehydrogenase, Fe-S cluster and FAD-binding subunit XdhA (XdhA)
Ruegeria pomeroyi DSS-3 654 SPO0655 K07090 nan Sulfite exporter TauE/SafE/YfcA and related permeases, UPF0721 family (TauE) (PUBMED:21183667;22797525)
Ruegeria pomeroyi DSS-3 655 1.20292E-4 2.04169E-4 1.34017E-4 1.40186E-4 SPO0656 K02337 nan DNA polymerase III, alpha subunit (DnaE) (PDB:2HNH)
Ruegeria pomeroyi DSS-3 656 SPO0657 K02234 nan Zinc metallochaperone YeiR/ZagA and related GTPases, G3E family (YejR) (PDB:1NIJ) (PUBMED:19822009;31132310)
Ruegeria pomeroyi DSS-3 657 1.00398E-6 SPO0658 nan Predicted amidohydrolase YtcJ (YtcJ) (PDB:3ICJ)
Ruegeria pomeroyi DSS-3 658 SPO0659 nan DNA-binding transcriptional regulator, LysR family (LysR) (PDB:2FYI)
Ruegeria pomeroyi DSS-3 659 4.19221E-6 1.04805E-5 5.24026E-6 SPO0660 K02035 nan ABC-type transport system, periplasmic component (DdpA) (PDB:3RQT)
Ruegeria pomeroyi DSS-3 660 SPO0661 K02033 nan ABC-type dipeptide/oligopeptide/nickel transport system, permease component (DppB)
Ruegeria pomeroyi DSS-3 661 SPO0662 K02034 nan ABC-type dipeptide/oligopeptide/nickel transport system, permease component (DppC)
Ruegeria pomeroyi DSS-3 662 SPO0663 K02031 nan ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component (DppD) (PDB:4FWI)
Ruegeria pomeroyi DSS-3 663 1.65415E-6 SPO0664 K02032 nan ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component (DppD) (PDB:4FWI)
Ruegeria pomeroyi DSS-3 664 5.5776E-5 SPO0665 K03745 nan Uncharacterized coiled-coil protein SlyX (sensitive to lysis X) (SlyX) (PDB:3EFG)
Ruegeria pomeroyi DSS-3 665 SPO0666 K01692 beta-Oxidation Enoyl-CoA hydratase/carnithine racemase (CaiD) (PDB:1DCI)
Ruegeria pomeroyi DSS-3 666 9.34159E-4 0.001840851 0.00125664 0.001115739 SPO0667 K01892 nan Histidyl-tRNA synthetase (HisS) (PDB:1KMM)
Ruegeria pomeroyi DSS-3 667 3.64855E-4 2.70868E-4 4.95576E-4 4.07586E-4 SPO0668 K02502 Histidine biosynthesis, PRPP => histidine ATP phosphoribosyltransferase regulatory subunit HisZ (HisZ) (PDB:3OD1) (PUBMED:9767141)
Ruegeria pomeroyi DSS-3 668 1.01479E-4 9.07103E-5 6.84484E-5 1.32121E-4 SPO0669 K00765 Histidine biosynthesis, PRPP => histidine ATP phosphoribosyltransferase (HisG) (PDB:1H3D)
Ruegeria pomeroyi DSS-3 669 6.10199E-6 SPO0670 K14162 nan DNA polymerase III, alpha subunit (DnaE) (PDB:2HNH)
Ruegeria pomeroyi DSS-3 670 SPO0671 K14161 nan Nucleotidyltransferase/DNA polymerase DinP involved in DNA repair (DinP) (PDB:4R8U) (PUBMED:16544291)
Ruegeria pomeroyi DSS-3 671 SPO0672 K14160 nan Uncharacterized conserved protein
Ruegeria pomeroyi DSS-3 672 0.003101385 0.009524691 0.002217974 0.002625429 SPO0673 K03851 nan Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (BioA) (PDB:1MLY)
Ruegeria pomeroyi DSS-3 673 2.75407E-4 0.001199133 7.33328E-4 1.3675E-4 SPO0674 K15551 nan ABC-type taurine transport system, periplasmic component (TauA) (PDB:6SSY)
Ruegeria pomeroyi DSS-3 674 5.12294E-6 1.45028E-5 8.1967E-6 SPO0675 K10831 nan ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component (TauB)
Ruegeria pomeroyi DSS-3 675 4.7343E-6 1.89372E-6 SPO0676 K15552 nan ABC-type nitrate/sulfonate/bicarbonate transport system, permease component (TauC)
Ruegeria pomeroyi DSS-3 676 4.46841E-4 2.92992E-5 1.58742E-4 4.29954E-4 SPO0677 K00666 nan O-succinylbenzoic acid-CoA ligase MenE or related acyl-CoA synthetase (AMP-forming) (MenE/FadK) (PDB:5EY9) (PUBMED:25151136;27455459)
Ruegeria pomeroyi DSS-3 677 1.54941E-5 1.67933E-4 1.66418E-5 1.72156E-5 SPO0678 K01480 Polyamine biosynthesis, arginine => agmatine => putrescine => spermidine Arginase/agmatinase family enzyme (SpeB) (PDB:1CEV)
Ruegeria pomeroyi DSS-3 678 5.80118E-5 2.28354E-5 1.12586E-4 4.64095E-5 SPO0679 K01800 Tyrosine degradation, tyrosine => homogentisate Glutathione S-transferase (GstA) (PDB:1A0F)
Ruegeria pomeroyi DSS-3 679 6.82339E-5 SPO0680 K08234 nan Catechol 2,3-dioxygenase or related enzyme, vicinal oxygen chelate (VOC) family (GloA) (PDB:3R4Q) (PUBMED:11830595)
Ruegeria pomeroyi DSS-3 680 SPO0681 nan
Ruegeria pomeroyi DSS-3 681 3.32371E-5 3.16445E-4 1.71128E-4 6.74969E-5 SPO0682 K05712 Trans-cinnamate degradation, trans-cinnamate => acetyl-CoA 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases (UbiH) (PDB:1BF3)
Ruegeria pomeroyi DSS-3 682 1.80743E-4 6.59381E-4 1.98122E-4 7.76266E-5 SPO0683 K05555 Type II polyketide backbone biosynthesis, acyl-CoA + malonyl-CoA => polyketide Glyoxylase or a related metal-dependent hydrolase, beta-lactamase superfamily II (GloB) (PDB:1QH3) (PUBMED:25670698)
Ruegeria pomeroyi DSS-3 683 SPO0684 nan Catechol 2,3-dioxygenase or related enzyme, vicinal oxygen chelate (VOC) family (GloA) (PDB:3R4Q) (PUBMED:11830595)
Ruegeria pomeroyi DSS-3 684 3.16733E-4 0.001043089 0.001030314 3.25293E-4 SPO0685 K01555 Tyrosine degradation, tyrosine => homogentisate 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) (YcgM) (PDB:1GTT)
Ruegeria pomeroyi DSS-3 685 3.56784E-4 0.002044198 5.05342E-4 3.27153E-4 SPO0686 K00451 Tyrosine degradation, tyrosine => homogentisate Homogentisate 1,2-dioxygenase (HmgA) (PDB:1EY2)
Ruegeria pomeroyi DSS-3 686 SPO0687 nan DNA-binding transcriptional regulator, MarR family (MarR) (PDB:1JGS)
Ruegeria pomeroyi DSS-3 687 7.01361E-5 8.48177E-4 7.89582E-5 7.89582E-5 SPO0688 K01768 nan Adenylate cyclase, class 3 (AcyC) (PDB:1AB8)
Ruegeria pomeroyi DSS-3 688 3.72584E-4 7.97757E-4 9.3095E-4 4.45059E-4 SPO0689 nan ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ (ParA) (PDB:6NOO)
Ruegeria pomeroyi DSS-3 689 SPO0690 nan Uncharacterized conserved protein, DUF1491 domain (PDB:2KNR)
Ruegeria pomeroyi DSS-3 690 9.12257E-5 2.18192E-4 1.83668E-4 1.25283E-4 SPO0691 K03595 nan GTPase Era, involved in 16S rRNA processing (Era) (PDB:1EGA)
Ruegeria pomeroyi DSS-3 691 1.19128E-6 SPO0692 nan Multicopper oxidase with three cupredoxin domains (includes cell division protein FtsP and spore coat protein CotA) (SufI) (PDB:2YXV)
Ruegeria pomeroyi DSS-3 692 0.01205954 8.43114E-4 0.001801385 0.008851128 SPO0693 K14448 Ethylmalonyl pathway Acyl-CoA dehydrogenase related to the alkylation response protein AidB (CaiA) (PDB:1BUC)
Ruegeria pomeroyi DSS-3 693 SPO0694 nan
Ruegeria pomeroyi DSS-3 694 2.26466E-5 SPO0695 nan
Ruegeria pomeroyi DSS-3 695 SPO_tRNA-Val-2 nan
Ruegeria pomeroyi DSS-3 696 1.69037E-4 1.20578E-4 1.7847E-4 3.35524E-4 SPO0697 K02017 nan ABC-type molybdate transport system, ATPase component ModC (ModC)
Ruegeria pomeroyi DSS-3 697 SPO0698 K02018 nan ABC-type molybdate transport system, permease component ModB (ModB)
Ruegeria pomeroyi DSS-3 698 1.38376E-4 2.4408E-5 2.26302E-4 2.22699E-4 SPO0699 K02020 nan ABC-type molybdate transport system, periplasmic Mo-binding protein ModA (ModA) (PDB:1AMF)
Ruegeria pomeroyi DSS-3 699 SPO0700 K02019 nan DNA-binding transcriptional regulator ModE (molybdenum-dependent) (ModE) (PDB:1B9M) (PUBMED:19779461)
Ruegeria pomeroyi DSS-3 700 1.61049E-5 0.03150623 0.028088111 0.001324901 SPO0701 K00134 Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase (GapA) (PDB:3ZDF)
Ruegeria pomeroyi DSS-3 701 6.6973E-6 3.9663E-5 1.67433E-6 SPO0702 K02032 nan ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component (DppD) (PDB:4FWI)
Ruegeria pomeroyi DSS-3 702 6.6366E-6 2.06214E-5 7.74272E-6 1.65915E-6 SPO0703 K02031 nan ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component (DppD) (PDB:4FWI)
Ruegeria pomeroyi DSS-3 703 1.46839E-6 SPO0704 K02034 nan ABC-type dipeptide/oligopeptide/nickel transport system, permease component (DppC)
Ruegeria pomeroyi DSS-3 704 SPO0705 K02033 nan ABC-type dipeptide/oligopeptide/nickel transport system, permease component (DppB)
Ruegeria pomeroyi DSS-3 705 0.002648029 0.014304064 0.003450095 0.002362251 SPO0706 K02035 nan ABC-type transport system, periplasmic component (DdpA) (PDB:3RQT)
Ruegeria pomeroyi DSS-3 706 4.71803E-5 3.08913E-5 1.69849E-5 7.54885E-6 SPO0707 nan DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family (GlpR)
Ruegeria pomeroyi DSS-3 707 SPO0708 nan Dehydrogenase (flavoprotein) (FixC) (PDB:4OPU)
Ruegeria pomeroyi DSS-3 708 0.01375528 0.004923021 0.009282706 0.006340332 SPO0709 K01610 Gluconeogenesis, oxaloacetate => fructose-6P Phosphoenolpyruvate carboxykinase, ATP-dependent (PckA) (PDB:1AQ2)
Ruegeria pomeroyi DSS-3 709 3.96629E-4 8.17681E-4 6.83735E-4 5.79689E-4 SPO0710 K14981 nan DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain (OmpR) (PDB:1XHF)
Ruegeria pomeroyi DSS-3 710 2.55769E-4 8.53733E-4 2.57377E-4 5.5111E-4 SPO0711 K14980 nan Signal transduction histidine kinase (BaeS) (PDB:1JOY)
Ruegeria pomeroyi DSS-3 711 1.27716E-5 1.59645E-5 SPO0712 K06023 nan Serine kinase of the HPr protein, regulates carbohydrate metabolism (HprK) (PDB:1JB1)
Ruegeria pomeroyi DSS-3 712 2.41717E-5 1.56545E-5 4.38312E-5 3.67409E-5 SPO0713 K06958 nan RNase adaptor protein RapZ for GlmZ sRNA degradation, contains a P-loop ATPase domain (RapZ) (PDB:5O5O) (PUBMED:23475961)
Ruegeria pomeroyi DSS-3 713 3.80201E-5 SPO0714 K02793 nan Phosphotransferase system, mannose/fructose-specific component IIA (ManX) (PDB:1PDO)
Ruegeria pomeroyi DSS-3 714 6.17055E-6 SPO0715 K02784 nan HPr or related phosphotransfer protein (PtsH) (PDB:1CM2)
Ruegeria pomeroyi DSS-3 715 7.52096E-4 0.001105477 3.84735E-4 7.31618E-4 SPO0716 nan Putative hemolysin
Ruegeria pomeroyi DSS-3 716 9.52099E-4 2.60417E-4 6.82542E-4 5.80003E-4 SPO0717 K00074 Phenylacetate degradation, phenylaxetate => acetyl-CoA/succinyl-CoA 3-hydroxyacyl-CoA dehydrogenase (FadB) (PDB:5ZQZ)
Ruegeria pomeroyi DSS-3 717 SPO0718 nan
Ruegeria pomeroyi DSS-3 718 0.02513782 0.040103402 0.060558375 0.0140636 SPO0719 K03522 nan Electron transfer flavoprotein, alpha subunit FixB (FixB) (PDB:1EFP)
Ruegeria pomeroyi DSS-3 719 0.010802698 0.003963646 0.026492797 0.010260783 SPO0720 K03521 nan Electron transfer flavoprotein, alpha and beta subunits (FixA) (PDB:5OL2)
Ruegeria pomeroyi DSS-3 720 1.32652E-6 1.13467E-5 SPO0721 K06996 nan Lactoylglutathione lyase-related enzyme, vicinal oxygen chelate (VOC) family (VOC) (PDB:3OXH) (PUBMED:31710815)
Ruegeria pomeroyi DSS-3 721 7.6596E-4 4.97524E-4 4.52832E-4 6.89846E-4 SPO0722 K00798 Cobalamin biosynthesis, cobyrinate a,c-diamide => cobalamin Cob(II)alamin adenosyltransferase (PduO) (PDB:1NOG)
Ruegeria pomeroyi DSS-3 722 SPO0723 nan
Ruegeria pomeroyi DSS-3 723 7.98806E-6 8.01E-6 1.99701E-6 SPO0724 nan Short-chain dehydrogenase (YqjQ)
Ruegeria pomeroyi DSS-3 724 1.0411E-5 3.12329E-5 SPO0725 nan Uncharacterized conserved protein YgiM, contains N-terminal SH3 domain, DUF1202 family (YgiM) (PDB:2KQ8)
Ruegeria pomeroyi DSS-3 725 3.40603E-4 0.003853606 4.31665E-4 5.62288E-4 SPO0726 K02621 nan DNA gyrase/topoisomerase IV, subunit A (GyrA) (PDB:1SUU)
Ruegeria pomeroyi DSS-3 726 2.07087E-4 4.98479E-4 2.02891E-4 2.05179E-4 SPO0727 nan
Ruegeria pomeroyi DSS-3 727 SPO0728 K02358 nan Translation elongation factor EF-Tu, a GTPase (TufA) (PDB:1EFU)
Ruegeria pomeroyi DSS-3 728 7.18883E-5 2.99272E-5 2.82839E-5 5.49965E-5 SPO0729 nan Uncharacterized conserved protein, lysophospholipid acyltransferase (LPLAT) superfamily
Ruegeria pomeroyi DSS-3 729 SPO_tRNA-Trp-2 nan
Ruegeria pomeroyi DSS-3 730 SPO0731 K02444 nan DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family (GlpR)
Ruegeria pomeroyi DSS-3 731 7.1404E-5 1.04452E-4 9.13548E-5 7.45541E-5 SPO0732 K00111 nan Glycerol-3-phosphate dehydrogenase (GlpA) (PDB:2RGH)
Ruegeria pomeroyi DSS-3 732 9.54727E-5 6.61829E-5 6.87177E-5 1.32929E-4 SPO0733 nan 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase MenH and related esterases, alpha/beta hydrolase fold (MenH) (PDB:4MYS)
Ruegeria pomeroyi DSS-3 733 1.32133E-4 7.57201E-5 9.22183E-5 2.95923E-5 SPO0734 K02616 nan DNA-binding transcriptional regulator PaaX (phenylacetic acid degradation) (PaaX)
Ruegeria pomeroyi DSS-3 734 2.65206E-4 4.8567E-4 3.39735E-4 1.87412E-4 SPO0735 K02618 Phenylacetate degradation, phenylaxetate => acetyl-CoA/succinyl-CoA Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenase (AdhE) (PDB:1A4S)!!!Acyl-CoA dehydratase PaaZ (MaoC) (PDB:5ZY8)
Ruegeria pomeroyi DSS-3 735 SPO0736 K11690 nan TRAP-type C4-dicarboxylate transport system, large permease component (DctQ)
Ruegeria pomeroyi DSS-3 736 SPO0737 K21394 nan TRAP-type C4-dicarboxylate transport system, small permease component YiaM (DctM)
Ruegeria pomeroyi DSS-3 737 5.01387E-6 6.47999E-6 6.47999E-6 SPO0738 K21395 nan TRAP-type C4-dicarboxylate transport system, periplasmic component (DctP) (PDB:2CEX)
Ruegeria pomeroyi DSS-3 738 SPO0739 K07516 beta-Oxidation Enoyl-CoA hydratase/carnithine racemase (CaiD) (PDB:1DCI)!!!3-hydroxyacyl-CoA dehydrogenase (FadB) (PDB:5ZQZ)
Ruegeria pomeroyi DSS-3 739 SPO0740 K15866 Phenylacetate degradation, phenylaxetate => acetyl-CoA/succinyl-CoA Enoyl-CoA hydratase/carnithine racemase (CaiD) (PDB:1DCI)
Ruegeria pomeroyi DSS-3 740 2.51385E-5 2.18367E-5 3.86746E-6 SPO0741 K02614 nan Acyl-CoA thioesterase PaaI, contains HGG motif (PaaI) (PDB:1PSU)
Ruegeria pomeroyi DSS-3 741 9.13197E-5 6.42879E-4 2.52757E-4 1.02866E-4 SPO0742 K01912 Phenylacetate degradation, phenylaxetate => acetyl-CoA/succinyl-CoA Phenylacetate-coenzyme A ligase PaaK, adenylate-forming domain family (PaaK) (PDB:2Y4O)
Ruegeria pomeroyi DSS-3 742 4.43781E-5 1.10212E-4 1.07247E-4 5.17744E-5 SPO0743 nan DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA (AcrR) (PDB:2QOP)
Ruegeria pomeroyi DSS-3 743 1.34274E-6 9.58427E-7 SPO0744 nan DNA-binding transcriptional regulator DnrI/AfsR/EmbR, SARP family, contains BTAD domain (DnrI) (PDB:2FEZ) (PUBMED:12625841)
Ruegeria pomeroyi DSS-3 744 7.44145E-7 SPO0745 nan
Ruegeria pomeroyi DSS-3 745 7.82823E-6 4.23928E-5 4.81736E-6 4.81736E-6 SPO0746 nan Membrane-associated phospholipid phosphatase (PgpB) (PDB:1D2T)
Ruegeria pomeroyi DSS-3 746 0.0 SPO0747 nan
Ruegeria pomeroyi DSS-3 747 SPO0748 nan
Ruegeria pomeroyi DSS-3 748 SPO0749 nan
Ruegeria pomeroyi DSS-3 749 SPO0750 nan Predicted SnoaL-like aldol condensation-catalyzing enzyme (PUBMED:15071504)
Ruegeria pomeroyi DSS-3 750 1.26734E-5 6.10199E-6 3.52038E-6 1.40815E-6 SPO0751 K01768 nan Adenylate cyclase, class 3 (AcyC) (PDB:1AB8)
Ruegeria pomeroyi DSS-3 751 3.48685E-5 2.40381E-5 5.44821E-6 7.33692E-5 SPO0752 K02609 Phenylacetate degradation, phenylaxetate => acetyl-CoA/succinyl-CoA 1,2-phenylacetyl-CoA epoxidase, catalytic subunit (YdbO) (PDB:1OTK)
Ruegeria pomeroyi DSS-3 752 7.48357E-6 6.15326E-6 2.9228E-5 SPO0753 K02613 Phenylacetate degradation, phenylaxetate => acetyl-CoA/succinyl-CoA Ferredoxin (Fdx) (PDB:1KRH)!!!Flavodoxin/ferredoxin--NADP reductase (Fpr) (PDB:3OZU)
Ruegeria pomeroyi DSS-3 753 SPO0754 K02612 Phenylacetate degradation, phenylaxetate => acetyl-CoA/succinyl-CoA Metal-sulfur cluster biosynthetic enzyme (PaaD) (PDB:1UWD)
Ruegeria pomeroyi DSS-3 754 2.30211E-5 2.17067E-6 5.42667E-6 SPO0755 K02611 Phenylacetate degradation, phenylaxetate => acetyl-CoA/succinyl-CoA 1,2-phenylacetyl-CoA epoxidase, catalytic subunit (YdbO) (PDB:1OTK)
Ruegeria pomeroyi DSS-3 755 SPO0756 K02610 Phenylacetate degradation, phenylaxetate => acetyl-CoA/succinyl-CoA 1,2-phenylacetyl-CoA epoxidase, PaaB subunit (PaaB) (PDB:3EGR)
Ruegeria pomeroyi DSS-3 756 1.10945E-5 6.65671E-6 SPO0757 K02609 Phenylacetate degradation, phenylaxetate => acetyl-CoA/succinyl-CoA 1,2-phenylacetyl-CoA epoxidase, catalytic subunit (YdbO) (PDB:1OTK)
Ruegeria pomeroyi DSS-3 757 8.92417E-5 2.56387E-5 2.6086E-5 1.14412E-4 SPO0758 K00632 Ethylmalonyl pathway Acetyl-CoA acetyltransferase (PaaJ) (PDB:1AFW)
Ruegeria pomeroyi DSS-3 758 SPO0759 nan
Ruegeria pomeroyi DSS-3 759 SPO0760 K01607 nan Alkylhydroperoxidase family enzyme, contains CxxC motif (YciW) (PDB:1GU9)
Ruegeria pomeroyi DSS-3 760 3.23046E-5 1.66237E-4 5.0476E-5 3.23046E-5 SPO0761 K07130 Tryptophan metabolism, tryptophan => kynurenine => 2-aminomuconate Kynurenine formamidase (PDB:1R61)
Ruegeria pomeroyi DSS-3 761 2.5425E-5 1.67601E-5 1.017E-5 1.61025E-5 SPO0762 nan DNA-binding transcriptional regulator, GntR family (GntR) (PDB:3FMS)
Ruegeria pomeroyi DSS-3 762 SPO0763 nan GMP synthase, glutamine amidotransferase domain (GuaA1) (PDB:4WIM)
Ruegeria pomeroyi DSS-3 763 1.17962E-5 3.21231E-5 SPO0764 nan Cytochrome P450 (CypX) (PDB:3A4Z)
Ruegeria pomeroyi DSS-3 764 3.7124E-5 1.68111E-4 1.04118E-4 7.97951E-5 SPO0765 K01915 nan Glutamine synthetase (GlnA) (PDB:1F1H)
Ruegeria pomeroyi DSS-3 765 4.75251E-5 2.11223E-5 SPO0766 K04755 nan Ferredoxin (Fdx) (PDB:1KRH)
Ruegeria pomeroyi DSS-3 766 2.91304E-4 5.32907E-4 2.93691E-4 2.90508E-4 SPO0767 nan tRNA1(Val) A37 N6-methylase TrmN6 (TrmN6)
Ruegeria pomeroyi DSS-3 767 5.34221E-6 8.54753E-6 SPO0768 nan DNA-binding transcriptional regulator, IclR family (IclR) (PDB:1MKM)
Ruegeria pomeroyi DSS-3 768 1.03169E-5 3.69265E-5 3.22735E-5 1.58722E-6 SPO0769 K07795 nan Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC (TctC) (PDB:2DVZ)
Ruegeria pomeroyi DSS-3 769 SPO0770 K07794 nan
Ruegeria pomeroyi DSS-3 770 SPO0771 K07793 nan TctA family transporter (PUBMED:14499931)
Ruegeria pomeroyi DSS-3 771 1.20379E-4 7.36689E-4 5.00136E-4 1.54735E-4 SPO0772 K07516 beta-Oxidation Enoyl-CoA hydratase/carnithine racemase (CaiD) (PDB:1DCI)!!!3-hydroxyacyl-CoA dehydrogenase (FadB) (PDB:5ZQZ)
Ruegeria pomeroyi DSS-3 772 7.02275E-4 0.002313371 0.0014818 7.43943E-4 SPO0773 K00626 Ethylmalonyl pathway Acetyl-CoA acetyltransferase (PaaJ) (PDB:1AFW)
Ruegeria pomeroyi DSS-3 773 2.35759E-5 7.48944E-5 1.0586E-4 5.08498E-6 SPO0774 K04118 nan Acyl-CoA dehydrogenase related to the alkylation response protein AidB (CaiA) (PDB:1BUC)
Ruegeria pomeroyi DSS-3 774 1.31235E-4 6.54133E-5 1.31803E-5 SPO0775 nan Acyl-CoA dehydrogenase related to the alkylation response protein AidB (CaiA) (PDB:1BUC)
Ruegeria pomeroyi DSS-3 775 SPO0776 K17362 nan Acyl-CoA thioesterase PaaI, contains HGG motif (PaaI) (PDB:1PSU)
Ruegeria pomeroyi DSS-3 776 1.8306E-5 1.59645E-6 8.61457E-6 5.38411E-6 SPO0777 nan Enoyl-CoA hydratase/carnithine racemase (CaiD) (PDB:1DCI)
Ruegeria pomeroyi DSS-3 777 6.47999E-6 7.1969E-6 SPO0778 nan O-succinylbenzoic acid-CoA ligase MenE or related acyl-CoA synthetase (AMP-forming) (MenE/FadK) (PDB:5EY9) (PUBMED:25151136;27455459)
Ruegeria pomeroyi DSS-3 778 0.00363801 0.001233893 0.001498051 4.92422E-4 SPO0779 K01783 Pentose phosphate pathway (Pentose phosphate cycle) Pentose-5-phosphate-3-epimerase (Rpe) (PDB:1H1Y)
Ruegeria pomeroyi DSS-3 779 SPO0780 K02041 nan ABC-type phosphate/phosphonate transport system, ATPase component (PhnC)
Ruegeria pomeroyi DSS-3 780 SPO0781 K02044 nan ABC-type phosphate/phosphonate transport system, periplasmic component (PhnD) (PDB:3S4U)
Ruegeria pomeroyi DSS-3 781 SPO0782 K02042 nan ABC-type phosphate/phosphonate transport system, permease component (PhnE)
Ruegeria pomeroyi DSS-3 782 SPO0783 K02042 nan ABC-type phosphate/phosphonate transport system, permease component (PhnE)
Ruegeria pomeroyi DSS-3 783 SPO0784 nan Acetyltransferase, isoleucine patch superfamily (WbbJ)
Ruegeria pomeroyi DSS-3 784 2.41717E-5 3.97247E-6 7.73491E-6 3.22288E-5 SPO0785 K00883 D-galactonate degradation, De Ley-Doudoroff pathway, D-galactonate => glycerate-3P 2-keto-3-deoxy-galactonokinase (DgoK) (PDB:3R1X)
Ruegeria pomeroyi DSS-3 785 1.06557E-4 1.24759E-4 8.87978E-5 1.17486E-4 SPO0786 K01075 nan Acyl-CoA thioesterase FadM (FadM) (PDB:2FUJ)
Ruegeria pomeroyi DSS-3 786 5.16429E-5 7.06351E-5 4.28258E-5 4.5345E-5 SPO0787 K01091 nan Phosphoglycolate phosphatase, HAD superfamily (Gph) (PDB:2NYV)
Ruegeria pomeroyi DSS-3 787 SPO0788 K13075 nan Glyoxylase or a related metal-dependent hydrolase, beta-lactamase superfamily II (GloB) (PDB:1QH3) (PUBMED:25670698)
Ruegeria pomeroyi DSS-3 788 SPO0789 nan Hemin uptake protein HemP (HemP) (PDB:2JRA)
Ruegeria pomeroyi DSS-3 789 SPO0790 nan
Ruegeria pomeroyi DSS-3 790 2.24419E-4 0.001082743 2.97067E-4 4.4704E-4 SPO0791 K18201 nan Acetylornithine aminotransferase/4-aminobutyrate aminotransferase (ArgD) (PDB:1SF2)!!!Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain (NlpD) (PDB:2GU1)!!!Ser/Thr protein kinase RdoA involved in Cpx stress response, MazF antagonist (SrkA) (PDB:1ZYL)
Ruegeria pomeroyi DSS-3 791 0.002321702 0.00619258 0.00203133 0.001695511 SPO0792 K00042 nan 3-hydroxyisobutyrate dehydrogenase or related beta-hydroxyacid dehydrogenase (MmsB) (PDB:1I36)
Ruegeria pomeroyi DSS-3 792 1.64919E-6 1.70288E-5 SPO0793 K19591 Multidrug resistance, efflux pump MexPQ-OpmE DNA-binding transcriptional regulator, MerR family (SoxR) (PDB:2VZ4)
Ruegeria pomeroyi DSS-3 793 6.63262E-6 5.77416E-5 4.31119E-6 3.29419E-5 SPO0794 K17686 nan Cation-transporting P-type ATPase (ZntA) (PDB:4BBJ)!!!Copper chaperone CopZ (CopZ) (PDB:1AFI)
Ruegeria pomeroyi DSS-3 794 SPO0795 nan Short-chain dehydrogenase (YqjQ)
Ruegeria pomeroyi DSS-3 795 SPO0796 nan Nucleoside-diphosphate-sugar epimerase (WcaG) (PDB:2X4G)
Ruegeria pomeroyi DSS-3 796 SPO0797 K03453 nan Predicted Na+-dependent transporter YfeH (YfeH) (PDB:4N7X) (PUBMED:21175741)
Ruegeria pomeroyi DSS-3 797 SPO0798 K00485 nan Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD (CzcO) (PDB:4USQ)
Ruegeria pomeroyi DSS-3 798 SPO0799 K23777 nan DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA (AcrR) (PDB:2QOP)
Ruegeria pomeroyi DSS-3 799 2.84844E-6 1.5255E-5 1.02544E-5 1.13938E-6 SPO0800 nan Arylsulfatase A or related enzyme, AlkP superfamily (AslA) (PDB:1E1Z)
Ruegeria pomeroyi DSS-3 800 3.69541E-5 8.01547E-6 8.14359E-5 5.13251E-6 SPO0801 K01904 Monolignol biosynthesis, phenylalanine/tyrosine => monolignol O-succinylbenzoic acid-CoA ligase MenE or related acyl-CoA synthetase (AMP-forming) (MenE/FadK) (PDB:5EY9) (PUBMED:25151136;27455459)
Ruegeria pomeroyi DSS-3 801 0.015195918 0.053746227 0.019611001 0.014782229 SPO0802 K02945 nan Ribosomal protein S1 (RpsA) (PDB:4NNH)
Ruegeria pomeroyi DSS-3 802 SPO0803 K08310 Tetrahydrofolate biosynthesis, GTP => THF 8-oxo-dGTP pyrophosphatase MutT and related house-cleaning NTP pyrophosphohydrolases, NUDIX family (MutT) (PDB:4V14)
Ruegeria pomeroyi DSS-3 803 0.001039935 4.94271E-4 0.001604693 0.001047724 SPO0804 K05788 nan Bacterial nucleoid DNA-binding protein IHF-alpha (HimA) (PDB:1B8Z)
Ruegeria pomeroyi DSS-3 804 1.86162E-5 SPO0805 K08992 nan
Ruegeria pomeroyi DSS-3 805 4.06799E-5 1.2082E-4 5.00024E-5 3.2205E-5 SPO0806 K01817 Tryptophan biosynthesis, chorismate => tryptophan Phosphoribosylanthranilate isomerase (TrpF) (PDB:1DL3)
Ruegeria pomeroyi DSS-3 806 SPO0807 nan
Ruegeria pomeroyi DSS-3 807 8.61393E-4 0.003650633 0.001072395 8.01326E-4 SPO0808 K01696 Tryptophan biosynthesis, chorismate => tryptophan Tryptophan synthase beta chain (TrpB) (PDB:2DH5)
Ruegeria pomeroyi DSS-3 808 4.39343E-6 4.83278E-5 4.39343E-6 SPO0809 K09966 nan Uncharacterized conserved protein, DUF2237 family (PDB:2LQ3)
Ruegeria pomeroyi DSS-3 809 2.05765E-4 1.52103E-4 9.17662E-5 1.06903E-4 SPO0810 nan CubicO group peptidase, beta-lactamase class C family (AmpC) (PDB:1BLS)
Ruegeria pomeroyi DSS-3 810 3.04461E-4 7.58126E-4 4.79478E-4 3.04844E-4 SPO0811 K01056 nan Peptidyl-tRNA hydrolase (Pth) (PDB:1RYB) (PUBMED:11835511)
Ruegeria pomeroyi DSS-3 811 0.001614374 0.001011461 0.002003928 0.00290773 SPO0812 K02897 nan Ribosomal protein L25 (general stress protein Ctc) (RplY) (PDB:1B75)
Ruegeria pomeroyi DSS-3 812 6.03103E-5 6.38595E-5 1.315E-4 9.36581E-5 SPO0813 K00101 nan FMN-dependent dehydrogenase, includes L-lactate dehydrogenase and type II isopentenyl diphosphate isomerase (LldD) (PDB:6AI7)
Ruegeria pomeroyi DSS-3 813 5.97746E-5 4.03143E-5 7.65862E-5 4.23403E-5 SPO0814 nan Acyl-CoA dehydratase PaaZ (MaoC) (PDB:5ZY8)
Ruegeria pomeroyi DSS-3 814 0.001123416 0.002511779 0.001674683 0.001451252 SPO0815 K01695 Tryptophan biosynthesis, chorismate => tryptophan Tryptophan synthase alpha chain (TrpA) (PDB:6HUL)
Ruegeria pomeroyi DSS-3 815 SPO0816 K12976 nan
Ruegeria pomeroyi DSS-3 816 8.72668E-4 0.00229028 8.21511E-4 9.41378E-4 SPO0817 K06942 nan Ribosome-binding ATPase YchF, GTP1/OBG family (GTP1) (PDB:2DWQ) (PUBMED:21527254)
Ruegeria pomeroyi DSS-3 817 2.75969E-6 SPO0818 nan
Ruegeria pomeroyi DSS-3 818 9.62479E-5 5.49179E-5 2.90159E-5 5.5201E-5 SPO0819 K15358 nan Imidazolonepropionase or related amidohydrolase (HutI) (PDB:3OOQ)
Ruegeria pomeroyi DSS-3 819 3.56966E-4 9.73875E-5 4.56165E-4 3.53255E-4 SPO0820 nan Crotonobetainyl-CoA:carnitine CoA-transferase CaiB and related acyl-CoA transferases (CaiB) (PDB:1P5H)
Ruegeria pomeroyi DSS-3 820 1.51498E-5 2.25196E-5 3.4087E-5 1.51498E-5 SPO0821 K22296 nan DNA-binding transcriptional regulator, MarR family (MarR) (PDB:1JGS)
Ruegeria pomeroyi DSS-3 821 2.26E-6 9.03998E-6 SPO0822 K01996 nan ABC-type branched-chain amino acid transport system, ATPase component LivF (LivF) (PDB:1JI0) (PUBMED:26527648;32250026)
Ruegeria pomeroyi DSS-3 822 SPO0823 K01995 nan ABC-type branched-chain amino acid transport system, ATPase component LivG (LivG) (PDB:1G9X) (PUBMED:29514851)
Ruegeria pomeroyi DSS-3 823 SPO0824 K01998 nan Branched-chain amino acid ABC-type transport system, permease component (LivH)!!!ABC-type branched-chain amino acid transport system, permease component (LivM)
Ruegeria pomeroyi DSS-3 824 0.001507093 0.00290263 8.12012E-4 0.001019004 SPO0825 K01999 nan ABC-type branched-chain amino acid transport system, periplasmic component (LivK) (PDB:1USG)
Ruegeria pomeroyi DSS-3 825 2.95931E-4 1.33602E-4 1.25202E-4 1.5745E-4 SPO0826 nan
Ruegeria pomeroyi DSS-3 826 2.54875E-4 8.0017E-5 8.82442E-5 8.44891E-5 SPO0827 nan
Ruegeria pomeroyi DSS-3 827 SPO0828 K09740 nan Uncharacterized conserved protein, UPF0280 family, ApbE superfamily (PDB:2O34)
Ruegeria pomeroyi DSS-3 828 4.41995E-6 SPO0829 K20449 nan Ferredoxin (NapF) (PDB:6FAH)
Ruegeria pomeroyi DSS-3 829 6.00196E-6 1.94063E-5 SPO0830 K07469 nan Aldehyde, CO or xanthine dehydrogenase, Mo-binding subunit (CoxL) (PDB:1DGJ) (PUBMED:10095793)!!!Aldehyde, CO, or xanthine dehydrogenase, Fe-S subunit, CoxS/CutS family (CutS) (PDB:1FFU) (PUBMED:21175741)
Ruegeria pomeroyi DSS-3 830 1.79731E-5 2.4408E-5 1.19821E-5 SPO0831 nan Aldehyde, CO, or xanthine dehydrogenase, FAD-binding subunit (CutB) (PDB:5Y6Q)
Ruegeria pomeroyi DSS-3 831 7.70777E-6 3.08311E-5 8.9924E-6 SPO0832 K11921 nan DNA-binding transcriptional regulator, LysR family (LysR) (PDB:2FYI)
Ruegeria pomeroyi DSS-3 832 1.43348E-4 8.39487E-5 7.74855E-6 4.32628E-5 SPO0833 K22515 nan NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit (chain F) (NuoF) (PDB:2FUG)!!!NADH:ubiquinone oxidoreductase 24 kD subunit (chain E) (NuoE) (PDB:5XF9)
Ruegeria pomeroyi DSS-3 833 2.3303E-4 9.34899E-4 7.3026E-5 7.63903E-5 SPO0834 K00123 nan Predicted molibdopterin-dependent oxidoreductase YjgC (YjgC) (PDB:1AA6)
Ruegeria pomeroyi DSS-3 834 3.59879E-4 2.93672E-4 2.08716E-4 2.69042E-4 SPO0835 K07130 Tryptophan metabolism, tryptophan => kynurenine => 2-aminomuconate Kynurenine formamidase (PDB:1R61)
Ruegeria pomeroyi DSS-3 835 1.18828E-4 3.80366E-5 2.89042E-5 8.02893E-5 SPO0836 K07107 nan Acyl-CoA thioesterase FadM (FadM) (PDB:2FUJ)
Ruegeria pomeroyi DSS-3 836 SPO0837 nan
Ruegeria pomeroyi DSS-3 837 SPO0838 K16566 nan Sugar transferase involved in LPS biosynthesis (colanic, teichoic acid) (WcaJ) (PDB:5W7L)
Ruegeria pomeroyi DSS-3 838 SPO0839 nan Fe-S cluster carrier ATPase, Mrp/ApbC/NBP35 family (Mrp) (PDB:2PH1) (PUBMED:18616280;19114487;31709520)
Ruegeria pomeroyi DSS-3 839 3.21533E-6 1.38097E-5 1.15752E-5 5.14453E-6 SPO0840 K25590 nan Exopolysaccharide export protein/domain GumC/Wzc1 (GumC) (PUBMED:15003255;23089617)
Ruegeria pomeroyi DSS-3 840 SPO0841 nan Membrane protein involved in the export of O-antigen and teichoic acid (RfbX)
Ruegeria pomeroyi DSS-3 841 5.47809E-6 3.66805E-6 5.47809E-6 5.47809E-6 SPO0842 K16703 nan Glycosyltransferase involved in cell wall bisynthesis (RfaB) (PDB:2IV7)
Ruegeria pomeroyi DSS-3 842 1.95437E-5 7.81749E-6 4.88593E-6 SPO0843 nan Glycosyltransferase involved in cell wall bisynthesis (WcaA) (PDB:5MLZ)
Ruegeria pomeroyi DSS-3 843 2.59967E-5 6.10199E-6 7.36573E-6 1.42982E-5 SPO0844 nan Ca2+-binding protein, RTX toxin-related (PDB:1AF0) (PUBMED:15135544)
Ruegeria pomeroyi DSS-3 844 2.17928E-5 6.10199E-6 6.9737E-6 SPO0845 nan
Ruegeria pomeroyi DSS-3 845 2.46269E-6 SPO0846 K02362 nan 4'-phosphopantetheinyl transferase EntD (siderophore biosynthesis) (EntD) (PDB:4QJK)
Ruegeria pomeroyi DSS-3 846 3.05914E-4 0.001263112 2.64088E-4 3.60511E-4 SPO0847 nan Methionyl-tRNA formyltransferase (Fmt) (PDB:1FMT)!!!EntF, seryl-AMP synthase component  of non-ribosomal peptide synthetase (EntF) (PDB:5ES5)!!!Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase) (SsuD) (PDB:1BRL)
Ruegeria pomeroyi DSS-3 847 1.47541E-5 SPO0848 K16870 nan Glycosyltransferase, GT2 family (WcaE) (PDB:2Z86)
Ruegeria pomeroyi DSS-3 848 1.85967E-5 5.66997E-5 4.18105E-5 3.71078E-5 SPO0849 K12444 nan NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family (FabG) (PDB:6L1H)!!!Thioesterase domain of type I polyketide synthase or non-ribosomal peptide synthetase (EntF2) (PDB:5JA1)!!!Acyl transferase domain in polyketide synthase (PKS) enzymes (PksD) (PDB:6IYO)
Ruegeria pomeroyi DSS-3 849 SPO0850 nan Tetratricopeptide (TPR) repeat (TPR) (PDB:3AS4)
Ruegeria pomeroyi DSS-3 850 2.74589E-5 2.57774E-5 2.41639E-5 1.42786E-5 SPO0851 K05946 nan UDP-N-acetyl-D-mannosaminuronic acid transferase, WecB/TagA/CpsF family (WecG)
Ruegeria pomeroyi DSS-3 851 5.10681E-6 2.49627E-5 6.80908E-6 8.90418E-6 SPO0852 nan Nucleoside-diphosphate-sugar epimerase (WcaG) (PDB:2X4G)!!!Predicted dehydrogenase (MviM) (PDB:3UUW)
Ruegeria pomeroyi DSS-3 852 6.84335E-6 1.71084E-6 SPO0853 nan Glycosyltransferase, GT2 family (WcaE) (PDB:2Z86)
Ruegeria pomeroyi DSS-3 853 1.37677E-5 1.30028E-5 SPO0854 nan Glycosyltransferase involved in cell wall bisynthesis (RfaB) (PDB:2IV7)
Ruegeria pomeroyi DSS-3 854 0.002137122 0.00138662 6.23998E-4 SPO0855 K00854 Glucuronate pathway (uronate pathway) Sugar (pentulose or hexulose) kinase (XylB) (PDB:4C23)
Ruegeria pomeroyi DSS-3 855 5.63098E-5 0.031384785 0.007746713 0.004256347 SPO0856 K01805 nan Xylose isomerase (XylA) (PDB:1A0C)
Ruegeria pomeroyi DSS-3 856 0.002671044 7.65201E-4 4.56766E-4 SPO0857 K01785 Galactose degradation, Leloir pathway, galactose => alpha-D-glucose-1P Galactose mutarotase or related enzyme (GalM) (PDB:1LUR)
Ruegeria pomeroyi DSS-3 857 5.46471E-4 6.17826E-4 2.29672E-4 SPO0858 K00428 nan Cytochrome c peroxidase (MauG) (PDB:1EB7)
Ruegeria pomeroyi DSS-3 858 1.10945E-5 1.54648E-5 3.9561E-5 SPO0859 K21162 9-membered enediyne core biosynthesis, malonyl-CoA => 3-hydroxyhexadeca-4,6,8,10,12,14-hexaenoyl-ACP => 9-membered enediyne core Type IV pilus assembly protein PilF/PilW (PilF) (PDB:2VQ2) (PUBMED:16403447)
Ruegeria pomeroyi DSS-3 859 1.24186E-5 0.00109554 9.31397E-4 7.74094E-4 SPO0860 nan Sugar kinase of the NBD/HSP70 family, may contain an N-terminal HTH domain (NagC) (PDB:1WOQ)
Ruegeria pomeroyi DSS-3 860 0.08607017 0.37925565 0.002130878 SPO0861 K10543 nan ABC-type xylose transport system, periplasmic component (XylF) (PDB:4YWH)
Ruegeria pomeroyi DSS-3 861 7.44628E-4 2.38571E-4 SPO0862 K10544 nan ABC-type xylose transport system, permease component (XylH)
Ruegeria pomeroyi DSS-3 862 8.58092E-6 0.012552806 0.005666983 0.001736921 SPO0863 K10545 nan ABC-type sugar transport system, ATPase component (MglA)
Ruegeria pomeroyi DSS-3 863 0.002692817 0.003745865 8.8131E-4 SPO0864 K00845 Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate Glucokinase (Glk) (PDB:1Q18)
Ruegeria pomeroyi DSS-3 864 0.012100148 0.002840753 0.001035119 SPO0865 nan Predicted dehydrogenase (MviM) (PDB:3UUW)
Ruegeria pomeroyi DSS-3 865 4.51506E-5 5.08947E-5 1.75074E-5 3.77791E-5 SPO0866 K00681 nan Gamma-glutamyltranspeptidase (Ggt) (PDB:2Z8I) (PUBMED:16618936)
Ruegeria pomeroyi DSS-3 866 2.76609E-5 1.78111E-4 9.9606E-6 2.07288E-5 SPO0867 K09800 nan Autotransporter translocation and assembly protein TamB (TamB) (PDB:5VTG)
Ruegeria pomeroyi DSS-3 867 2.78702E-5 1.74924E-4 1.85801E-5 5.05622E-5 SPO0868 K07278 nan Outer membrane translocation and assembly module TamA (TamA) (PDB:4BZA)
Ruegeria pomeroyi DSS-3 868 SPO0869 nan Uncharacterized membrane protein
Ruegeria pomeroyi DSS-3 869 8.67594E-5 1.53144E-4 1.87234E-4 1.49668E-4 SPO0870 nan DNA-binding transcriptional regulator, LysR family (LysR) (PDB:2FYI)
Ruegeria pomeroyi DSS-3 870 4.18865E-5 8.01547E-6 7.44649E-5 8.37727E-5 SPO0871 K07127 Purine degradation, xanthine => urea 5-hydroxyisourate hydrolase (purine catabolism), transthyretin-related family (HiuH) (PDB:2IGL)
Ruegeria pomeroyi DSS-3 871 3.38136E-5 1.06176E-5 3.92549E-5 SPO0872 K16842 Purine degradation, xanthine => urea Peptidoglycan/xylan/chitin deacetylase, PgdA/NodB/CDA1 family (CDA1) (PDB:1NY1)!!!2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU) decarboxylase (uric acid degradation) (PucL) (PDB:2O70)
Ruegeria pomeroyi DSS-3 872 SPO0873 K01483 nan Ureidoglycolate hydrolase (allantoin degradation) (AllA) (PDB:1XSQ)
Ruegeria pomeroyi DSS-3 873 SPO0874 nan Xanthine/uracil permease (UraA) (PDB:3QE7)
Ruegeria pomeroyi DSS-3 874 5.48339E-4 4.99289E-4 0.002013096 5.57576E-4 SPO0875 K00134 Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase (GapA) (PDB:3ZDF)
Ruegeria pomeroyi DSS-3 875 1.29806E-5 7.98806E-6 SPO0876 K14977 nan Ureidoglycine aminohydrolase (AllE) (PDB:1RC6) (PUBMED:19935661)
Ruegeria pomeroyi DSS-3 876 9.78973E-5 1.9212E-4 6.19219E-4 2.69814E-4 SPO0876a nan
Ruegeria pomeroyi DSS-3 877 8.58092E-6 8.58092E-6 SPO0877 nan 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase MenH and related esterases, alpha/beta hydrolase fold (MenH) (PDB:4MYS)
Ruegeria pomeroyi DSS-3 878 SPO0878 K02437 Photorespiration Glycine cleavage system protein H (lipoate-binding) (GcvH) (PDB:1DXM)
Ruegeria pomeroyi DSS-3 879 4.25581E-4 0.005311446 9.74982E-4 5.97282E-4 SPO0879 K00249 beta-Oxidation Acyl-CoA dehydrogenase related to the alkylation response protein AidB (CaiA) (PDB:1BUC)
Ruegeria pomeroyi DSS-3 880 1.87932E-5 9.66864E-7 1.5313E-5 4.28067E-5 SPO0880 nan Acyl-CoA thioesterase PaaI, contains HGG motif (PaaI) (PDB:1PSU)
Ruegeria pomeroyi DSS-3 881 6.41897E-5 4.9648E-5 5.70575E-5 1.1887E-4 SPO0881 nan
Ruegeria pomeroyi DSS-3 882 SPO0882 nan
Ruegeria pomeroyi DSS-3 883 SPO0883 K08970 nan ABC-type uncharacterized transport system, periplasmic component
Ruegeria pomeroyi DSS-3 884 SPO0884 K08970 nan ABC-type nickel/cobalt efflux system, permease component RcnA (RcnA)
Ruegeria pomeroyi DSS-3 885 2.20731E-5 1.2586E-4 2.64877E-5 2.64877E-5 SPO0885 K01055 Catechol ortho-cleavage, catechol => 3-oxoadipate 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase MenH and related esterases, alpha/beta hydrolase fold (MenH) (PDB:4MYS)
Ruegeria pomeroyi DSS-3 886 0.013021321 0.007062034 0.027855895 0.016781751 SPO0886 K04078 nan Co-chaperonin GroES (HSP10) (GroES)
Ruegeria pomeroyi DSS-3 887 0.31435814 0.37173694 0.6974525 0.16221665 SPO0887 K04077 nan Chaperonin GroEL (HSP60 family) (GroEL) (PDB:1AON)
Ruegeria pomeroyi DSS-3 888 4.40047E-5 1.6387E-4 1.66631E-4 1.901E-4 SPO0888 K03824 nan Predicted N-acetyltransferase YhbS (yhbS) (PDB:4ZBG)
Ruegeria pomeroyi DSS-3 889 SPO0889 nan Permease of the drug/metabolite transporter (DMT) superfamily (RhaT) (PDB:5I20)
Ruegeria pomeroyi DSS-3 890 1.92319E-5 SPO0890 K01046 Acylglycerol degradation Triacylglycerol esterase/lipase EstA, alpha/beta hydrolase fold (EstA) (PDB:1I6W)
Ruegeria pomeroyi DSS-3 891 2.08458E-5 2.6869E-5 2.73152E-5 2.15646E-5 SPO0891 K06162 nan Alpha-D-ribose 1-methylphosphonate 5-triphosphate diphosphatase PhnM (PhnM)
Ruegeria pomeroyi DSS-3 892 1.20758E-4 1.1287E-4 1.07682E-4 8.51203E-5 SPO0892 K01589 Inosine monophosphate biosynthesis, PRPP + glutamine => IMP Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) (PurK) (PDB:1B6R)
Ruegeria pomeroyi DSS-3 893 2.2035E-4 3.82051E-4 2.1696E-4 2.0001E-4 SPO0893 K01588 Inosine monophosphate biosynthesis, PRPP + glutamine => IMP Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase (PurE) (PDB:1D7A)
Ruegeria pomeroyi DSS-3 894 2.01807E-4 1.608E-4 1.98498E-4 2.55842E-4 SPO0894 K09794 nan Uncharacterized conserved protein, DUF465 domain
Ruegeria pomeroyi DSS-3 895 1.80387E-4 2.80874E-5 3.62779E-4 3.43404E-4 SPO0895 K04080 nan Small heat shock protein IbpA, HSP20 family (IbpA) (PDB:1GME)
Ruegeria pomeroyi DSS-3 896 SPO0896 nan Uncharacterized conserved protein, DUF1150 family
Ruegeria pomeroyi DSS-3 897 1.27891E-4 9.89429E-5 1.25383E-4 1.53595E-4 SPO0897 K06998 Pyocyanine biosynthesis, chorismate => pyocyanine Predicted epimerase YddE/YHI9, PhzF superfamily (YHI9) (PDB:1SDJ) (PUBMED:24914732)
Ruegeria pomeroyi DSS-3 898 1.08492E-4 1.20006E-4 1.06252E-4 9.92107E-5 SPO0898 nan
Ruegeria pomeroyi DSS-3 899 1.40815E-6 1.02291E-5 4.0367E-5 2.34692E-5 SPO0899 nan
Ruegeria pomeroyi DSS-3 900 0.007474238 0.006448721 0.008333235 0.007255789 SPO0900 K00958 Assimilatory sulfate reduction, sulfate => H2S Adenylylsulfate kinase or related kinase (CysC) (PDB:2GKS)!!!ATP sulfurylase (sulfate adenylyltransferase) (MET3) (PDB:1G8F)
Ruegeria pomeroyi DSS-3 901 3.88799E-6 2.21303E-5 9.71998E-7 9.71998E-7 SPO0901 K01768 nan Adenylate cyclase, class 3 (AcyC) (PDB:1AB8)!!!Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF (NqrF) (PDB:4P6V)
Ruegeria pomeroyi DSS-3 902 SPO0902 nan
Ruegeria pomeroyi DSS-3 903 0.00208881 0.003752722 0.001804862 0.001931191 SPO0903 K00384 nan Thioredoxin reductase (TrxB) (PDB:3FBS)
Ruegeria pomeroyi DSS-3 904 3.72185E-4 6.06501E-5 1.09174E-4 3.79353E-4 SPO0904 K03719 nan DNA-binding transcriptional regulator, Lrp family (Lrp) (PDB:1I1G)
Ruegeria pomeroyi DSS-3 905 2.10413E-6 SPO0905 nan Ca2+-binding protein, RTX toxin-related (PDB:1AF0) (PUBMED:15135544)
Ruegeria pomeroyi DSS-3 906 5.30582E-4 4.45228E-4 6.08254E-4 3.36217E-4 SPO0906 K05810 Methionine salvage pathway Copper oxidase (laccase) domain (YfiH) (PDB:1RV9)
Ruegeria pomeroyi DSS-3 907 1.47884E-5 7.73489E-6 1.54698E-6 SPO0907 K18164 nan SAM-dependent methyltransferase, MidA family (MidA) (PDB:1ZKD)
Ruegeria pomeroyi DSS-3 908 SPO0908 K13292 nan Prolipoprotein diacylglyceryltransferase (Lgt) (PDB:5AZB)
Ruegeria pomeroyi DSS-3 909 6.06106E-4 5.31243E-4 0.001305974 9.68877E-4 SPO0909 K09806 nan Ubiquinone biosynthesis accessory factor UbiK (UbiK) (PUBMED:28559279)
Ruegeria pomeroyi DSS-3 910 SPO0910 nan Uncharacterized conserved protein YbjN, helps stabilize unstable proteins (YbjN) (PUBMED:16701556)
Ruegeria pomeroyi DSS-3 911 1.7878E-4 3.19522E-4 2.54176E-4 4.11555E-4 SPO0911 K00286 Proline biosynthesis, glutamate => proline Pyrroline-5-carboxylate reductase (ProC) (PDB:3GT0) (PUBMED:22125496;26507882)
Ruegeria pomeroyi DSS-3 912 4.41304E-5 1.20846E-5 1.22585E-4 3.59581E-5 SPO0912 K06878 nan tRNA-binding EMAP/Myf domain (EMAP) (PDB:1MKH)
Ruegeria pomeroyi DSS-3 913 1.80172E-4 1.68379E-4 5.24925E-4 2.66216E-4 SPO0913 nan Lactate dehydrogenase or related 2-hydroxyacid dehydrogenase (LdhA) (PDB:1DXY)
Ruegeria pomeroyi DSS-3 914 4.43781E-5 3.21293E-5 2.77363E-6 1.75663E-5 SPO0914 K00857 nan Thymidine kinase (Tdk) (PDB:1W4R)
Ruegeria pomeroyi DSS-3 915 3.69072E-4 4.14535E-4 5.00954E-4 3.63167E-4 SPO0915 nan
Ruegeria pomeroyi DSS-3 916 SPO0916 nan Uncharacterized conserved protein, DUF2332 domain
Ruegeria pomeroyi DSS-3 917 SPO0917 nan Lactoylglutathione lyase-related enzyme, vicinal oxygen chelate (VOC) family (VOC) (PDB:3OXH) (PUBMED:31710815)
Ruegeria pomeroyi DSS-3 918 1.96973E-4 7.42409E-4 2.23577E-4 7.12713E-5 SPO0918 K16872 nan 3-oxoacyl-[acyl-carrier-protein] synthase III (FabH) (PDB:1UB7)
Ruegeria pomeroyi DSS-3 919 SPO0919 nan DNA-binding transcriptional regulator, MarR family (MarR) (PDB:1JGS)
Ruegeria pomeroyi DSS-3 920 4.12296E-5 2.09158E-4 6.65172E-5 9.12549E-5 SPO0920 nan Multidrug efflux pump subunit AcrA (membrane-fusion protein) (AcrA) (PDB:1T5E)
Ruegeria pomeroyi DSS-3 921 4.89367E-6 4.93644E-6 1.19623E-5 7.88424E-6 SPO0921 nan Multidrug efflux pump subunit AcrB (AcrB) (PDB:1IWG)
Ruegeria pomeroyi DSS-3 922 6.46093E-5 1.42274E-6 1.61523E-5 SPO0922 nan Catechol 2,3-dioxygenase or related enzyme, vicinal oxygen chelate (VOC) family (GloA) (PDB:3R4Q) (PUBMED:11830595)
Ruegeria pomeroyi DSS-3 923 0.004384131 0.037702773 0.008186616 0.006421934 SPO0923 K01955 Uridine monophosphate biosynthesis, glutamine (+ PRPP) => UMP Carbamoylphosphate synthase large subunit (CarB) (PDB:1C30)
Ruegeria pomeroyi DSS-3 924 SPO0924 nan Anthranilate/para-aminobenzoate synthases component I (TrpE) (PDB:1I1Q)
Ruegeria pomeroyi DSS-3 925 1.02173E-5 1.02173E-5 SPO0925 K02619 nan Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase (IlvE) (PDB:1A3G)
Ruegeria pomeroyi DSS-3 926 0.005071338 0.01592035 0.003525056 0.00571004 SPO0926 K01876 nan Aspartyl-tRNA synthetase (AspS) (PDB:1C0A)
Ruegeria pomeroyi DSS-3 927 SPO0927 nan
Ruegeria pomeroyi DSS-3 928 9.26884E-6 6.10199E-6 3.93926E-5 2.00825E-5 SPO0928 nan
Ruegeria pomeroyi DSS-3 929 SPO0929 nan N6-adenosine-specific RNA methylase IME4 (IME4) (PDB:5IL0)
Ruegeria pomeroyi DSS-3 930 SPO0930 nan
Ruegeria pomeroyi DSS-3 931 1.95315E-5 SPO0931 nan Response regulator c-di-GMP phosphodiesterase, RpfG family, contains REC and HD-GYP domains (RpfG)
Ruegeria pomeroyi DSS-3 932 3.91694E-4 1.99217E-4 2.96126E-5 4.76494E-4 SPO0932 K05606 Ethylmalonyl pathway 4-hydroxyphenylpyruvate dioxygenase and related hemolysins (HppD)
Ruegeria pomeroyi DSS-3 933 SPO0933 nan Predicted secreted protein
Ruegeria pomeroyi DSS-3 934 SPO0934 K06203 nan Sulfate transporter CysZ (CysZ) (PDB:3TX3) (PUBMED:24657232)
Ruegeria pomeroyi DSS-3 935 6.55011E-4 2.09191E-4 5.68248E-4 2.53614E-4 SPO0935 nan Nitroreductase (NfnB) (PDB:1F5V)
Ruegeria pomeroyi DSS-3 936 SPO0936 nan
Ruegeria pomeroyi DSS-3 937 SPO0937 K09131 nan Uncharacterized conserved protein YggU, UPF0235/DUF167 family (YggU) (PDB:1JRM)
Ruegeria pomeroyi DSS-3 938 1.60434E-4 9.90236E-5 1.99515E-4 3.3321E-4 SPO0938 nan
Ruegeria pomeroyi DSS-3 939 4.73032E-4 0.001365725 9.18375E-4 3.89963E-4 SPO0939 nan Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains (BepA) (PDB:6AIT) (PUBMED:24003122)
Ruegeria pomeroyi DSS-3 940 6.10199E-6 1.80059E-5 SPO0940 nan Putative translation regulator, IMPACT (imprinted ancient) protein family (YIH1) (PDB:1VI7) (PUBMED:15126500)
Ruegeria pomeroyi DSS-3 941 SPO0941 nan
Ruegeria pomeroyi DSS-3 942 SPO0942 nan
Ruegeria pomeroyi DSS-3 943 6.17826E-5 1.67554E-4 4.14172E-4 1.85348E-4 SPO0943 K23886 nan Uncharacterized conserved protein, contains Zn-finger domain of CDGSH type (PDB:2QD0)
Ruegeria pomeroyi DSS-3 944 7.36562E-5 8.26336E-4 2.25093E-4 6.52101E-5 SPO0944 K14441 nan tRNA A37 methylthiotransferase MiaB (MiaB) (PDB:4JC0) (PUBMED:17407324;20472640;20584901)
Ruegeria pomeroyi DSS-3 945 0.002142223 0.008138017 0.001853017 0.001424459 SPO0945 K07289 nan Uncharacterized conserved protein AsmA involved in outer membrane biogenesis (AsmA)
Ruegeria pomeroyi DSS-3 946 8.68982E-4 0.003599317 0.001019326 0.00173539 SPO0946 K15778 Glycogen degradation, glycogen => glucose-6P Phosphomannomutase (ManB) (PDB:6MNV)
Ruegeria pomeroyi DSS-3 947 7.93038E-4 0.001484107 8.0229E-4 7.67264E-4 SPO0947 K01627 CMP-KDO biosynthesis 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase (KdsA) (PDB:1G7U)
Ruegeria pomeroyi DSS-3 948 2.38164E-4 0.001004653 2.13414E-4 5.24896E-4 SPO0948 K10107 nan Capsule polysaccharide export protein KpsE/RkpR (KpsE)
Ruegeria pomeroyi DSS-3 949 2.31721E-6 1.13141E-5 SPO0949 K09689 nan ABC-type polysaccharide/polyol phosphate transport system, ATPase component (TagH) (PDB:6JBH)
Ruegeria pomeroyi DSS-3 950 SPO0950 K21929 nan Uracil-DNA glycosylase (Udg4) (PDB:3IKB)
Ruegeria pomeroyi DSS-3 951 1.78169E-5 2.85706E-5 4.29701E-5 3.00441E-5 SPO0951 nan
Ruegeria pomeroyi DSS-3 952 SPO0952 nan
Ruegeria pomeroyi DSS-3 953 2.57663E-4 0.003120704 9.15299E-5 2.79605E-4 SPO0953 K11209 nan Glutathione S-transferase (GstA) (PDB:1A0F)
Ruegeria pomeroyi DSS-3 954 1.1678E-4 3.56375E-4 3.21932E-4 1.8832E-4 SPO0954 nan Heavy metal-bindng TRASH/YHS domain, predicted Cu/Ag metallochaperone (YHS)
Ruegeria pomeroyi DSS-3 955 6.8321E-5 6.99144E-6 1.28519E-4 2.35279E-4 SPO0955 nan Predicted amidohydrolase YtcJ (YtcJ) (PDB:3ICJ)
Ruegeria pomeroyi DSS-3 956 9.43034E-4 5.19253E-4 0.003406943 0.001647537 SPO0956 K13583 nan Uncharacterized conserved protein (PDB:5YIU)
Ruegeria pomeroyi DSS-3 957 SPO0957 nan ABC-type multidrug transport system, permease component (YadH)
Ruegeria pomeroyi DSS-3 958 SPO0958 nan
Ruegeria pomeroyi DSS-3 959 SPO0959 K15270 nan Permease of the drug/metabolite transporter (DMT) superfamily (RhaT) (PDB:5I20)
Ruegeria pomeroyi DSS-3 960 SPO0960 nan DNA-binding transcriptional regulator, MerR family (SoxR) (PDB:2VZ4)
Ruegeria pomeroyi DSS-3 961 2.58437E-5 5.81484E-5 SPO0961 nan
Ruegeria pomeroyi DSS-3 962 4.83868E-4 2.34481E-4 2.92615E-4 8.96103E-4 SPO0962 K00821 Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine Acetylornithine/succinyldiaminopimelate/putrescine aminotransferase (ArgD) (PDB:2E54)
Ruegeria pomeroyi DSS-3 963 4.08318E-4 0.00163071 3.35807E-4 4.04752E-4 SPO0963 K00611 Arginine biosynthesis, ornithine => arginine Ornithine carbamoyltransferase (ArgF) (PDB:1A1S)
Ruegeria pomeroyi DSS-3 964 SPO0964 K00145 Ornithine biosynthesis, glutamate => ornithine N-acetyl-gamma-glutamylphosphate reductase (ArgC) (PDB:3DR3)
Ruegeria pomeroyi DSS-3 965 SPO0965 K09707 nan Ribosomal protein S18 acetylase RimI and related acetyltransferases (RimI) (PDB:1GHE)!!!ACT domain, ACT-7 family (ACT-7) (PDB:1ZHV) (PUBMED:16987805)
Ruegeria pomeroyi DSS-3 966 3.69709E-6 SPO0966 K00077 Pantothenate biosynthesis, valine/L-aspartate => pantothenate Ketopantoate reductase (PanE) (PDB:1BG6)
Ruegeria pomeroyi DSS-3 967 SPO0967 K03306 nan Phosphate/sulfate permease (PitA) (PUBMED:31358606)
Ruegeria pomeroyi DSS-3 968 SPO0968 K07766 nan 8-oxo-dGTP pyrophosphatase MutT and related house-cleaning NTP pyrophosphohydrolases, NUDIX family (MutT) (PDB:4V14)
Ruegeria pomeroyi DSS-3 969 SPO0970 K06188 nan Glycerol uptake facilitator or related aquaporin (Major Intrinsic protein Family) (GlpF) (PDB:1FQY)
Ruegeria pomeroyi DSS-3 970 6.10199E-6 1.02842E-6 6.68476E-6 SPO0971 K00108 Betaine biosynthesis, choline => betaine Choline dehydrogenase or related flavoprotein (BetA) (PDB:1B4V)
Ruegeria pomeroyi DSS-3 971 4.37458E-6 1.12169E-5 1.5255E-5 SPO0972 K03579 nan HrpA-like RNA helicase (HrpA) (PDB:5N8R)
Ruegeria pomeroyi DSS-3 972 8.27993E-5 5.01138E-5 3.03597E-4 7.99829E-5 SPO0973 K07588 nan GTPase of the G3E family (not a periplasmic protein kinase) (ArgK) (PDB:2QM7) (PUBMED:18950999)
Ruegeria pomeroyi DSS-3 973 0.001965483 8.56769E-4 0.005403149 0.001776642 SPO0974 K02902 nan Ribosomal protein L28 (RpmB) (PDB:2JZ6)
Ruegeria pomeroyi DSS-3 974 SPO0975 nan
Ruegeria pomeroyi DSS-3 975 6.37255E-4 2.30584E-4 0.002337176 7.0691E-4 SPO0976 K09796 nan Copper(I)-binding protein (PDB:1X9L)
Ruegeria pomeroyi DSS-3 976 1.59645E-6 SPO0977 nan Ornithine cyclodeaminase/archaeal alanine dehydrogenase, mu-crystallin family (OCDMu) (PDB:2I99)
Ruegeria pomeroyi DSS-3 977 9.4686E-6 1.53865E-5 2.36715E-6 SPO0978 K12410 nan NAD-dependent protein deacetylase, SIR2 family (SIR2) (PDB:1M2N)
Ruegeria pomeroyi DSS-3 978 8.04353E-6 SPO0979 K25307 nan Protein-tyrosine-phosphatase (Wzb) (PDB:4D74) (PUBMED:26641313)
Ruegeria pomeroyi DSS-3 979 1.17066E-4 1.15938E-4 2.09457E-4 2.11752E-4 SPO0980 nan DNA-binding transcriptional regulator, LysR family (LysR) (PDB:2FYI)
Ruegeria pomeroyi DSS-3 980 SPO0981 K15509 nan Histidinol dehydrogenase (HisD) (PDB:1K75)
Ruegeria pomeroyi DSS-3 981 3.17078E-6 2.95854E-5 1.26831E-6 SPO0982 nan
Ruegeria pomeroyi DSS-3 982 6.68366E-4 0.003136638 3.08359E-4 4.31825E-4 SPO0983 K03596 nan Translation elongation factor EF-4, membrane-bound GTPase (LepA) (PDB:3DEG)
Ruegeria pomeroyi DSS-3 983 SPO0984 K09816 nan ABC-type Mn2+/Zn2+ transport system, permease component (ZnuB)
Ruegeria pomeroyi DSS-3 984 2.94954E-5 8.58092E-6 1.82345E-5 SPO0985 K09817 nan ABC-type Mn2+/Zn2+ transport system, ATPase component (ZnuC)
Ruegeria pomeroyi DSS-3 985 3.45396E-6 7.06351E-5 3.10856E-5 2.5329E-5 SPO0986 K09823 nan Fe2+ or Zn2+ uptake regulation protein Fur/Zur (Fur) (PDB:1MZB)
Ruegeria pomeroyi DSS-3 986 SPO0987 K09815 nan ABC-type Zn2+ transport system, periplasmic component/surface adhesin ZnuA (ZnuA) (PDB:2OGW)
Ruegeria pomeroyi DSS-3 987 SPO0988 K07112 nan Uncharacterized membrane protein YedE/YeeE, contains two sulfur transport domains (YedE)
Ruegeria pomeroyi DSS-3 988 4.29046E-6 3.01443E-5 8.00887E-5 3.14633E-5 SPO0989 K22042 nan DNA-binding transcriptional regulator, ArsR family (ArsR) (PDB:3F6V)
Ruegeria pomeroyi DSS-3 989 SPO0990 nan Thiol-disulfide isomerase or thioredoxin (TrxA) (PDB:1XFL)
Ruegeria pomeroyi DSS-3 990 SPO0991 K06196 nan Cytochrome c biogenesis protein CcdA (CcdA) (PDB:5VKV)
Ruegeria pomeroyi DSS-3 991 1.86893E-5 9.24142E-5 1.86893E-5 SPO0992 nan Thioredoxin-related protein SoxW (SoxW) (PDB:4FYB)
Ruegeria pomeroyi DSS-3 992 SPO0993 K17223 Thiosulfate oxidation by SOX complex, thiosulfate => sulfate Cytochrome c2 (Cyc7) (PDB:1YEA)
Ruegeria pomeroyi DSS-3 993 3.64223E-6 3.97956E-6 SPO0994 K17226 Thiosulfate oxidation by SOX complex, thiosulfate => sulfate Sulfur oxidation protein SoxY (SoxY) (PDB:2NNC) (PUBMED:17327392)
Ruegeria pomeroyi DSS-3 994 2.01534E-5 6.04601E-5 1.84739E-5 SPO0995 K17227 Thiosulfate oxidation by SOX complex, thiosulfate => sulfate
Ruegeria pomeroyi DSS-3 995 4.85141E-6 2.64758E-5 5.82168E-5 7.76225E-6 SPO0996 K17222 Thiosulfate oxidation by SOX complex, thiosulfate => sulfate Thiosulfate dehydrogenase TsdA, contains C-terminal cytochrome c domain (TsdA) (PUBMED:32457501)
Ruegeria pomeroyi DSS-3 996 4.84285E-6 1.5255E-5 6.29571E-6 3.87428E-6 SPO0997 K17224 Thiosulfate oxidation by SOX complex, thiosulfate => sulfate 2',3'-cyclic-nucleotide 2'-phosphodiesterase/5'- or 3'-nucleotidase, 5'-nucleotidase family (UshA) (PDB:1HO5)
Ruegeria pomeroyi DSS-3 997 SPO0998 K17225 Thiosulfate oxidation by SOX complex, thiosulfate => sulfate Molybdopterin-dependent catalytic subunit of periplasmic DMSO/TMAO and protein-methionine-sulfoxide reductases (MsrP) (PDB:1OGP) (PUBMED:26641313;32750406)
Ruegeria pomeroyi DSS-3 998 SPO0999 K22622 Thiosulfate oxidation by SOX complex, thiosulfate => sulfate Thiosulfate dehydrogenase TsdA, contains C-terminal cytochrome c domain (TsdA) (PUBMED:32457501)!!!Cytochrome c2 (Cyc7) (PDB:1YEA)
Ruegeria pomeroyi DSS-3 999 SPO1000 K08738 nan Cytochrome c553 (CytC553) (PDB:6Q2U)!!!Cytochrome c2 (Cyc7) (PDB:1YEA)
Ruegeria pomeroyi DSS-3 1000 2.22287E-5 3.17386E-4 4.4065E-4 2.17928E-5 SPO1001 K17229 nan NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase, or a related oxidoreductase (FadH2) (PDB:1VRQ)
Ruegeria pomeroyi DSS-3 1001 6.10199E-6 SPO1002 nan Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH domain (GlxA)
Ruegeria pomeroyi DSS-3 1002 0.001573766 0.004692429 0.002034603 8.35153E-4 SPO1003 K01358 nan ATP-dependent protease ClpP, protease subunit (ClpP) (PDB:1TG6)
Ruegeria pomeroyi DSS-3 1003 0.007475731 0.006882517 0.007994327 0.005455784 SPO1004 K03544 nan ATP-dependent protease Clp, ATPase subunit ClpX (ClpX) (PDB:3HTE)
Ruegeria pomeroyi DSS-3 1004 2.89042E-5 1.92033E-4 6.42317E-5 8.24305E-5 SPO1005 K09022 nan Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family (RidA) (PDB:1J7H) (PUBMED:22094463;32205462)
Ruegeria pomeroyi DSS-3 1005 0.001532944 0.001495057 0.001994918 0.001248265 SPO1006 K11352 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex NADH:ubiquinone oxidoreductase NDUFA12 subunit (Leigh syndrome) (NDUFA12)
Ruegeria pomeroyi DSS-3 1006 7.45574E-5 1.12929E-4 1.4669E-4 9.09237E-5 SPO1007 K02067 nan Periplasmic subunit MlaD of the ABC-type intermembrane phospholipid transporter Mla (MlaD) (PDB:5UW8)
Ruegeria pomeroyi DSS-3 1007 5.99945E-5 2.4408E-5 1.15374E-5 2.76897E-5 SPO1008 nan Uncharacterized conserved protein, DUF2155 domain
Ruegeria pomeroyi DSS-3 1008 2.61514E-6 SPO1009 K00684 nan Leu/Phe-tRNA-protein transferase (Aat) (PDB:2CXA)
Ruegeria pomeroyi DSS-3 1009 0.001734378 0.012183635 0.003451224 0.002337374 SPO1010 K01961 3-Hydroxypropionate bi-cycle Acetyl/propionyl-CoA carboxylase, alpha subunit (PccA) (PDB:3U9S)
Ruegeria pomeroyi DSS-3 1010 0.001187097 0.001899546 0.001529218 0.001341693 SPO1011 K02160 3-Hydroxypropionate bi-cycle Biotin carboxyl carrier protein (AccB) (PDB:1A6X)
Ruegeria pomeroyi DSS-3 1011 3.08527E-6 6.10199E-6 7.71319E-6 3.08527E-6 SPO1012 nan DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains (CitB) (PDB:1A04)
Ruegeria pomeroyi DSS-3 1012 2.25505E-4 9.17148E-5 1.37532E-5 1.04335E-5 SPO1013 K00626 Ethylmalonyl pathway Acetyl-CoA acetyltransferase (PaaJ) (PDB:1AFW)
Ruegeria pomeroyi DSS-3 1013 2.24266E-5 4.37593E-6 SPO1014 nan O-succinylbenzoic acid-CoA ligase MenE or related acyl-CoA synthetase (AMP-forming) (MenE/FadK) (PDB:5EY9) (PUBMED:25151136;27455459)
Ruegeria pomeroyi DSS-3 1014 8.22738E-5 5.14213E-6 SPO1015 nan NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family (FabG) (PDB:6L1H)
Ruegeria pomeroyi DSS-3 1015 3.45342E-5 3.70099E-5 3.20074E-5 4.60456E-5 SPO1016 nan
Ruegeria pomeroyi DSS-3 1016 2.18796E-6 5.46991E-6 SPO1017 K01996 nan ABC-type branched-chain amino acid transport system, ATPase component LivF (LivF) (PDB:1JI0) (PUBMED:26527648;32250026)
Ruegeria pomeroyi DSS-3 1017 2.18796E-6 2.18796E-6 1.23985E-5 SPO1018 K01995 nan ABC-type branched-chain amino acid transport system, ATPase component LivG (LivG) (PDB:1G9X) (PUBMED:29514851)
Ruegeria pomeroyi DSS-3 1018 5.49179E-6 SPO1019 K01998 nan ABC-type branched-chain amino acid transport system, permease component (LivM)
Ruegeria pomeroyi DSS-3 1019 SPO1020 K01997 nan Branched-chain amino acid ABC-type transport system, permease component (LivH)
Ruegeria pomeroyi DSS-3 1020 6.89525E-5 2.17418E-5 3.72221E-5 4.39343E-5 SPO1021 K01999 nan ABC-type branched-chain amino acid transport system, periplasmic component (LivK) (PDB:1USG)
Ruegeria pomeroyi DSS-3 1021 0.001032889 4.91763E-5 4.10189E-4 0.001175056 SPO1022 nan Transcriptional regulator, contains XRE-family HTH domain (HipB) (PDB:1ADR)!!!Predicted transcriptional regulator (PDB:6CYJ)
Ruegeria pomeroyi DSS-3 1022 2.83307E-5 7.40956E-5 2.83307E-5 SPO1023 K03413 nan DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain (OmpR) (PDB:1XHF)
Ruegeria pomeroyi DSS-3 1023 SPO1024 nan
Ruegeria pomeroyi DSS-3 1024 1.53918E-6 SPO1025 nan Na+/proline symporter (PutP) (PDB:5NVA)!!!K+-sensing histidine kinase KdpD (KdpD) (PDB:2KSF)
Ruegeria pomeroyi DSS-3 1025 SPO1026 K02416 nan Flagellar motor switch protein FliM (FliM) (PDB:2HP7)
Ruegeria pomeroyi DSS-3 1026 2.61148E-4 6.02214E-4 3.50757E-4 2.47067E-4 SPO1027 nan Predicted phosphohydrolase, protein tyrosine phosphatase (PTP) superfamily, DUF442 family (PDB:2F46)
Ruegeria pomeroyi DSS-3 1027 SPO1028 K07112 nan Uncharacterized membrane protein YedE/YeeE, contains two sulfur transport domains (YedE)
Ruegeria pomeroyi DSS-3 1028 SPO1029 K07112 nan Uncharacterized membrane protein YedE/YeeE, contains two sulfur transport domains (YedE)
Ruegeria pomeroyi DSS-3 1029 4.50147E-5 1.36023E-4 1.62053E-5 7.20235E-6 SPO1030 K01069 nan Glyoxylase or a related metal-dependent hydrolase, beta-lactamase superfamily II (GloB) (PDB:1QH3) (PUBMED:25670698)
Ruegeria pomeroyi DSS-3 1030 SPO1031 nan
Ruegeria pomeroyi DSS-3 1031 SPO1032 nan
Ruegeria pomeroyi DSS-3 1032 5.23636E-4 4.98329E-4 5.72593E-4 5.57693E-4 SPO1033 nan Uncharacterized conserved protein, UPF0335 family (PDB:6CFY)
Ruegeria pomeroyi DSS-3 1033 8.3981E-4 3.20139E-4 5.25274E-4 6.82542E-4 SPO1034 nan
Ruegeria pomeroyi DSS-3 1034 SPO_tRNA-Thr-2 nan
Ruegeria pomeroyi DSS-3 1035 SPO1036 nan
Ruegeria pomeroyi DSS-3 1036 6.17196E-5 2.26124E-4 4.78642E-5 1.01186E-4 SPO1037 nan
Ruegeria pomeroyi DSS-3 1037 SPO1038 nan
Ruegeria pomeroyi DSS-3 1038 SPO1039 nan
Ruegeria pomeroyi DSS-3 1039 SPO1040 nan
Ruegeria pomeroyi DSS-3 1040 SPO1041 nan
Ruegeria pomeroyi DSS-3 1041 SPO1042 nan
Ruegeria pomeroyi DSS-3 1042 SPO1043 nan
Ruegeria pomeroyi DSS-3 1043 SPO1044 nan
Ruegeria pomeroyi DSS-3 1044 3.53044E-4 4.61495E-5 SPO1044a nan
Ruegeria pomeroyi DSS-3 1045 3.77184E-5 2.4408E-5 3.01747E-6 SPO1045 nan
Ruegeria pomeroyi DSS-3 1046 2.29203E-4 1.96385E-4 5.29511E-5 5.29511E-5 SPO1046 nan
Ruegeria pomeroyi DSS-3 1047 1.10859E-4 2.72555E-4 6.65156E-5 5.51453E-5 SPO1047 K00986 nan Retron-type reverse transcriptase (YkfC)
Ruegeria pomeroyi DSS-3 1048 2.01312E-5 1.22524E-4 8.15986E-5 2.20101E-5 SPO1048 nan
Ruegeria pomeroyi DSS-3 1049 5.88932E-6 2.50783E-4 1.53613E-4 6.13471E-5 SPO1049 K00558 Methionine degradation DNA-cytosine methylase (Dcm) (PDB:3LX6)
Ruegeria pomeroyi DSS-3 1050 SPO1050 nan Site-specific recombinase XerC (XerC)
Ruegeria pomeroyi DSS-3 1051 SPO1051 nan
Ruegeria pomeroyi DSS-3 1052 SPO1052 nan
Ruegeria pomeroyi DSS-3 1053 SPO1053 nan Predicted kinase, contains AAA domain (PDB:2RHM)
Ruegeria pomeroyi DSS-3 1054 SPO1054 nan Uncharacterized membrane protein
Ruegeria pomeroyi DSS-3 1055 SPO1055 nan
Ruegeria pomeroyi DSS-3 1056 SPO1056 K19267 nan Uncharacterized conserved protein YbjT, contains NAD(P)-binding and DUF2867 domains (YbjT) (PDB:5L3Z)
Ruegeria pomeroyi DSS-3 1057 6.61661E-6 6.61661E-6 7.71939E-6 SPO1057 nan AraC-type DNA-binding domain and AraC-containing proteins (AraC) (PDB:1BL0)
Ruegeria pomeroyi DSS-3 1058 SPO1058 K02517 KDO2-lipid A biosynthesis, Raetz pathway, LpxL-LpxM type Palmitoleoyl-ACP: Kdo2-lipid-IV acyltransferase (lipid A biosynthesis) (LpxP) (PDB:5F2T) (PUBMED:11830595)
Ruegeria pomeroyi DSS-3 1059 0.001249308 1.11971E-5 SPO1059 nan Serine/threonine protein kinase (SPS1) (PDB:6G4J)
Ruegeria pomeroyi DSS-3 1060 4.03688E-5 SPO1060 nan ABC-type amino acid transport/signal transduction system, periplasmic component/domain (HisJ) (PDB:1GGG)
Ruegeria pomeroyi DSS-3 1061 3.19678E-4 1.10036E-5 SPO1061 nan ABC-type amino acid transport/signal transduction system, periplasmic component/domain (HisJ) (PDB:1GGG)!!!Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain (XkdP) (PDB:5FIM) (PUBMED:27112601)
Ruegeria pomeroyi DSS-3 1062 0.005062808 1.47856E-4 SPO1062 nan ABC-type amino acid transport/signal transduction system, periplasmic component/domain (HisJ) (PDB:1GGG)
Ruegeria pomeroyi DSS-3 1063 1.80059E-5 SPO1063 nan Forkhead associated (FHA) domain, binds pSer, pThr, pTyr (FHA) (PDB:2FEZ)
Ruegeria pomeroyi DSS-3 1064 3.11201E-4 SPO1064 K20074 nan Serine/threonine protein phosphatase PrpC (PTC1) (PDB:6IHL)
Ruegeria pomeroyi DSS-3 1065 1.07413E-4 SPO1065 nan
Ruegeria pomeroyi DSS-3 1066 2.37659E-5 1.88649E-5 2.02623E-5 SPO1066 nan
Ruegeria pomeroyi DSS-3 1067 SPO1067 nan
Ruegeria pomeroyi DSS-3 1068 5.28839E-5 SPO1068 nan GTPase Era, involved in 16S rRNA processing (Era) (PDB:1EGA)
Ruegeria pomeroyi DSS-3 1069 7.84541E-7 4.52102E-4 7.84541E-7 2.87665E-6 SPO1069 nan Double Era-like domain GTPase Der (Der) (PDB:1MKY)
Ruegeria pomeroyi DSS-3 1070 3.97236E-6 1.98094E-4 3.97236E-6 2.97927E-6 SPO1070 K07077 nan Predicted oxidoreductase
Ruegeria pomeroyi DSS-3 1071 9.00293E-6 3.82625E-5 SPO1071 K01951 Guanine ribonucleotide biosynthesis, IMP => GDP,GTP GMP synthase, glutamine amidotransferase domain (GuaA1) (PDB:4WIM)
Ruegeria pomeroyi DSS-3 1072 5.8155E-4 0.001311595 5.01554E-4 6.80149E-4 SPO1072 K18189 nan Transcriptional and/or translational regulatory protein YebC/TACO1 (TACO1) (PDB:1KON)
Ruegeria pomeroyi DSS-3 1073 1.74898E-6 4.24726E-5 1.22428E-5 1.74898E-6 SPO1073 K07795 nan Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC (TctC) (PDB:2DVZ)
Ruegeria pomeroyi DSS-3 1074 SPO1074 K07794 nan
Ruegeria pomeroyi DSS-3 1075 SPO1075 K07793 nan TctA family transporter (PUBMED:14499931)
Ruegeria pomeroyi DSS-3 1076 1.5797E-5 5.82547E-5 2.41602E-5 2.41602E-5 SPO1076 nan Di- and tricarboxylate antiporter (CitT) (PDB:4F35)!!!Na+/H+ antiporter NhaD or related arsenite permease (ArsB)
Ruegeria pomeroyi DSS-3 1077 2.38773E-6 SPO1077 K17231 nan Nitroreductase (NfnB) (PDB:1F5V)
Ruegeria pomeroyi DSS-3 1078 SPO1078 K05596 nan DNA-binding transcriptional regulator, LysR family (LysR) (PDB:2FYI)
Ruegeria pomeroyi DSS-3 1079 SPO1079 K06895 nan Arginine exporter protein ArgO (ArgO)
Ruegeria pomeroyi DSS-3 1080 SPO1080 K15270 nan Permease of the drug/metabolite transporter (DMT) superfamily (RhaT) (PDB:5I20)
Ruegeria pomeroyi DSS-3 1081 SPO1081 nan Uncharacterized membrane protein
Ruegeria pomeroyi DSS-3 1082 5.97995E-5 SPO1082 K02167 nan DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA (AcrR) (PDB:2QOP)
Ruegeria pomeroyi DSS-3 1083 2.46146E-5 1.86784E-4 1.75037E-5 2.26089E-5 SPO1083 K01133 nan Arylsulfatase A or related enzyme, AlkP superfamily (AslA) (PDB:1E1Z)
Ruegeria pomeroyi DSS-3 1084 SPO1084 nan
Ruegeria pomeroyi DSS-3 1085 9.11883E-4 0.001628947 0.001575815 9.65162E-4 SPO1085 nan 2-Methylisocitrate lyase and related enzymes, PEP mutase family (PrpB) (PDB:1XG3)
Ruegeria pomeroyi DSS-3 1086 4.55278E-5 2.4408E-5 5.83325E-5 2.84549E-6 SPO1086 K02167 nan DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA (AcrR) (PDB:2QOP)
Ruegeria pomeroyi DSS-3 1087 SPO1087 nan Choline-glycine betaine transporter (BetT) (PDB:2WIT)
Ruegeria pomeroyi DSS-3 1088 SPO1088 K00108 Betaine biosynthesis, choline => betaine Choline dehydrogenase or related flavoprotein (BetA) (PDB:1B4V)
Ruegeria pomeroyi DSS-3 1089 4.49715E-5 3.24409E-5 SPO1089 K09794 nan Uncharacterized conserved protein YdcH, DUF465 family (YdcH) (PDB:1ZHC)
Ruegeria pomeroyi DSS-3 1090 5.90515E-5 1.82087E-5 1.3385E-5 4.92096E-5 SPO1090 K21686 nan Transcriptional regulator, contains XRE-family HTH domain (HipB) (PDB:1ADR)!!!Predicted transcriptional regulator (PDB:6CYJ)
Ruegeria pomeroyi DSS-3 1091 SPO1091 K09780 nan YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHis (YciI) (PDB:1MWQ) (PUBMED:15779043;23955343)
Ruegeria pomeroyi DSS-3 1092 1.8306E-6 SPO1092 nan DNA-binding transcriptional regulator, LysR family (LysR) (PDB:2FYI)
Ruegeria pomeroyi DSS-3 1093 SPO1093 K07552 nan Predicted arabinose efflux permease AraJ, MFS family (AraJ) (PDB:4LDS)
Ruegeria pomeroyi DSS-3 1094 0.005281809 1.95287E-4 8.28793E-4 0.002139644 SPO1094 K01966 Ethylmalonyl pathway Acetyl-CoA carboxylase, carboxyltransferase component (MmdA) (PDB:1OD2)
Ruegeria pomeroyi DSS-3 1095 5.04651E-5 3.36434E-5 SPO1094a nan
Ruegeria pomeroyi DSS-3 1096 SPO1095 nan Cupin domain protein related to quercetin dioxygenase (QdoI) (PDB:2H0V)
Ruegeria pomeroyi DSS-3 1097 7.81054E-4 SPO1096 nan
Ruegeria pomeroyi DSS-3 1098 1.84598E-5 SPO1097 nan
Ruegeria pomeroyi DSS-3 1099 SPO1098 nan
Ruegeria pomeroyi DSS-3 1100 SPO1099 nan
Ruegeria pomeroyi DSS-3 1101 SPO1100 nan
Ruegeria pomeroyi DSS-3 1102 0.006484101 0.003352053 0.002651004 0.004398539 SPO1101 K01965 Ethylmalonyl pathway Acetyl/propionyl-CoA carboxylase, alpha subunit (PccA) (PDB:3U9S)
Ruegeria pomeroyi DSS-3 1103 SPO1102 nan
Ruegeria pomeroyi DSS-3 1104 8.50596E-5 2.07594E-5 1.13233E-5 SPO1103 nan
Ruegeria pomeroyi DSS-3 1105 SPO1104 nan
Ruegeria pomeroyi DSS-3 1106 0.006212925 0.003335325 0.002190002 0.003629951 SPO1105 K01847 Ethylmalonyl pathway Methylmalonyl-CoA mutase, N-terminal domain/subunit (Sbm) (PDB:6OXC)!!!Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) (Sbm) (PDB:1B1A)
Ruegeria pomeroyi DSS-3 1107 1.09836E-5 1.99062E-5 6.04097E-5 1.78483E-5 SPO1106 nan
Ruegeria pomeroyi DSS-3 1108 3.01379E-5 5.37094E-6 3.01379E-5 SPO1107 K24217 nan L-amino acid N-acyltransferase MnaT (MnaT) (PDB:3DR6) (PUBMED:27941785)
Ruegeria pomeroyi DSS-3 1109 1.2879E-4 1.37929E-5 4.37399E-5 8.18099E-5 SPO1108 K05801 nan DnaJ domain-containing protein (DjlA) (PUBMED:15489435;11106641)
Ruegeria pomeroyi DSS-3 1110 6.51844E-6 SPO1109 nan Metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family (ElsH) (PUBMED:15178340)
Ruegeria pomeroyi DSS-3 1111 7.32239E-6 5.47597E-6 1.8306E-6 SPO1110 nan DNA-binding transcriptional regulator, LysR family (LysR) (PDB:2FYI)
Ruegeria pomeroyi DSS-3 1112 1.79731E-5 SPO1111 K22210 nan Uncharacterized conserved protein YcsI, UPF0317/DUF1446 family (YcsI) (PDB:2PIF)
Ruegeria pomeroyi DSS-3 1113 7.36218E-4 1.29219E-6 6.36729E-6 1.53876E-5 SPO1112 K21395 nan TRAP-type C4-dicarboxylate transport system, periplasmic component (DctP) (PDB:2CEX)
Ruegeria pomeroyi DSS-3 1114 SPO1113 K21394 nan TRAP-type mannitol/chloroaromatic compound transport system, small permease component (FcbT2)
Ruegeria pomeroyi DSS-3 1115 SPO1114 K11690 nan TRAP-type C4-dicarboxylate transport system, large permease component (DctQ)
Ruegeria pomeroyi DSS-3 1116 SPO1115 nan
Ruegeria pomeroyi DSS-3 1117 SPO1116 nan
Ruegeria pomeroyi DSS-3 1118 1.202E-4 2.36733E-4 5.05729E-5 1.04351E-4 SPO1117 K01524 nan Exopolyphosphatase/pppGpp-phosphohydrolase (GppA) (PDB:1T6C)
Ruegeria pomeroyi DSS-3 1119 1.34274E-6 9.76318E-6 7.24103E-5 SPO1118 nan Chromosomal replication initiation ATPase DnaA (DnaA) (PDB:1L8Q)
Ruegeria pomeroyi DSS-3 1120 2.47517E-5 1.5255E-5 1.00554E-5 SPO1119 nan Predicted PurR-regulated permease PerM (PerM)
Ruegeria pomeroyi DSS-3 1121 SPO1120 nan ATP-, maltotriose- and DNA-dependent transcriptional regulator MalT (MalT)
Ruegeria pomeroyi DSS-3 1122 0.004462079 0.008952149 0.00684935 0.004936298 SPO1121 K01881 nan Prolyl-tRNA synthetase (ProS) (PDB:5XIF)
Ruegeria pomeroyi DSS-3 1123 SPO1122 nan
Ruegeria pomeroyi DSS-3 1124 3.7472E-5 2.034E-4 5.48769E-5 3.31719E-5 SPO1123 K09808 nan ABC-type transport system involved in lipoprotein release, permease component LolC (LolE) (PDB:6F49)
Ruegeria pomeroyi DSS-3 1125 1.95103E-4 7.6189E-4 1.97512E-4 1.74228E-4 SPO1124 K09810 nan ABC-type lipoprotein export system, ATPase component (LolD) (PDB:5GKO)
Ruegeria pomeroyi DSS-3 1126 SPO1125 nan Cytochrome c553 (CytC553) (PDB:6Q2U)
Ruegeria pomeroyi DSS-3 1127 SPO1126 nan Cytochrome c553 (CytC553) (PDB:6Q2U)
Ruegeria pomeroyi DSS-3 1128 9.98507E-6 SPO1127 nan Thiosulfate dehydrogenase TsdA, contains C-terminal cytochrome c domain (TsdA) (PUBMED:32457501)
Ruegeria pomeroyi DSS-3 1129 1.85812E-5 1.82472E-5 9.6347E-6 SPO1128 nan
Ruegeria pomeroyi DSS-3 1130 1.11084E-4 1.01929E-5 4.90933E-5 1.62257E-5 SPO1129 K01246 nan 3-methyladenine DNA glycosylase Tag (Tag) (PDB:1LMZ)
Ruegeria pomeroyi DSS-3 1131 1.6272E-5 4.06799E-6 SPO1130 nan Acyl-CoA thioesterase PaaI, contains HGG motif (PaaI) (PDB:1PSU)
Ruegeria pomeroyi DSS-3 1132 0.001119606 0.00389917 0.001826783 7.62748E-4 SPO1131 K02002 nan ABC-type proline/glycine betaine transport system, periplasmic component (ProX) (PDB:1R9L)
Ruegeria pomeroyi DSS-3 1133 4.07962E-5 1.09583E-4 4.23652E-5 1.15066E-5 SPO1132 K02000 nan ABC-type proline/glycine betaine transport system, ATPase component (ProV)
Ruegeria pomeroyi DSS-3 1134 1.34578E-5 SPO1133 K02001 nan ABC-type proline/glycine betaine transport system, permease component (ProW)
Ruegeria pomeroyi DSS-3 1135 SPO1134 nan Uncharacterized membrane protein
Ruegeria pomeroyi DSS-3 1136 2.19071E-4 8.81013E-5 3.71121E-4 1.8506E-4 SPO1135 nan Nucleoside-triphosphatase THEP1 (THEP1) (PDB:1YE8)
Ruegeria pomeroyi DSS-3 1137 1.92273E-5 1.08153E-5 4.80682E-6 SPO1136 K15785 Ectoine degradation, ectoine => aspartate Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (BioA) (PDB:1MLY)
Ruegeria pomeroyi DSS-3 1138 SPO1137 K15786 Ectoine degradation, ectoine => aspartate Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenase (AdhE) (PDB:1A4S)
Ruegeria pomeroyi DSS-3 1139 SPO1138 K15782 nan DNA-binding transcriptional regulator, Lrp family (Lrp) (PDB:1I1G)
Ruegeria pomeroyi DSS-3 1140 8.15447E-5 1.57214E-5 3.32836E-6 3.27289E-5 SPO1139 K15784 Ectoine degradation, ectoine => aspartate Predicted deacylase (PDB:3CDX)
Ruegeria pomeroyi DSS-3 1141 2.85017E-5 2.19854E-5 1.52936E-5 2.22452E-5 SPO1140 K15783 Ectoine degradation, ectoine => aspartate Xaa-Pro aminopeptidase (PepP) (PDB:1A16)
Ruegeria pomeroyi DSS-3 1142 6.3858E-6 SPO1141 K19244 nan Ornithine cyclodeaminase/archaeal alanine dehydrogenase, mu-crystallin family (OCDMu) (PDB:2I99)
Ruegeria pomeroyi DSS-3 1143 2.4408E-5 1.63934E-6 SPO1142 K01754 Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine Threonine deaminase (IlvA) (PDB:3IAU)
Ruegeria pomeroyi DSS-3 1144 SPO1143 K01799 Nicotinate degradation, nicotinate => fumarate Maleate cis-trans isomerase (PDB:2DGD)
Ruegeria pomeroyi DSS-3 1145 SPO1144 nan Nucleotide-binding universal stress protein,  UspA family (UspA) (PDB:1JMV)
Ruegeria pomeroyi DSS-3 1146 SPO1145 K11690 nan TRAP-type C4-dicarboxylate transport system, large permease component (DctQ)
Ruegeria pomeroyi DSS-3 1147 SPO1146 K11689 nan TRAP-type C4-dicarboxylate transport system, small permease component YiaM (DctM)
Ruegeria pomeroyi DSS-3 1148 5.73647E-6 SPO1147 K21395 nan TRAP-type C4-dicarboxylate transport system, periplasmic component (DctP) (PDB:2CEX)
Ruegeria pomeroyi DSS-3 1149 1.18358E-5 4.7343E-6 7.69325E-6 SPO1148 nan DNA-binding transcriptional regulator, MocR family, contains an aminotransferase domain (ARO8) (PDB:2R2N)
Ruegeria pomeroyi DSS-3 1150 1.45308E-4 1.79643E-4 3.49024E-5 2.08702E-4 SPO1150 K03218 nan tRNA G18 (ribose-2'-O)-methylase SpoU (SpoU) (PDB:1GZ0)
Ruegeria pomeroyi DSS-3 1151 SPO1151 nan
Ruegeria pomeroyi DSS-3 1152 4.51628E-5 4.51628E-5 1.44521E-5 SPO1152 nan Heavy metal-bindng TRASH/YHS domain, predicted Cu/Ag metallochaperone (YHS)
Ruegeria pomeroyi DSS-3 1153 4.60546E-4 6.26527E-4 4.27525E-4 3.71913E-4 SPO1153 K06929 nan Predicted CoA-binding protein (YccU) (PDB:1IUK)
Ruegeria pomeroyi DSS-3 1154 5.90515E-4 2.84412E-4 8.20816E-4 7.57827E-4 SPO1154 nan
Ruegeria pomeroyi DSS-3 1155 1.07221E-4 3.30007E-5 5.05593E-5 3.39968E-5 SPO1155 K01523 Histidine biosynthesis, PRPP => histidine Phosphoribosyl-ATP pyrophosphohydrolase (HisI2) (PDB:6J22)
Ruegeria pomeroyi DSS-3 1156 5.26387E-4 7.37601E-4 5.36155E-4 4.73206E-4 SPO1156 K02500 Histidine biosynthesis, PRPP => histidine Imidazole glycerol phosphate synthase subunit HisF (HisF) (PDB:1OX4)
Ruegeria pomeroyi DSS-3 1157 SPO1157 nan
Ruegeria pomeroyi DSS-3 1158 2.31113E-4 1.04899E-4 2.58572E-4 1.81534E-4 SPO1158 K01814 Histidine biosynthesis, PRPP => histidine Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) (PDB:4U28)
Ruegeria pomeroyi DSS-3 1159 4.16045E-6 1.05728E-4 1.24813E-4 3.7444E-5 SPO1159 nan Uncharacterized conserved protein, DUF2147 family (PDB:4INN)
Ruegeria pomeroyi DSS-3 1160 1.23411E-5 SPO1160 nan Peroxiredoxin (Bcp) (PDB:5IPH)
Ruegeria pomeroyi DSS-3 1161 SPO1161 nan AraC-type DNA-binding domain and AraC-containing proteins (AraC) (PDB:1BL0)
Ruegeria pomeroyi DSS-3 1162 4.77941E-4 9.10512E-4 2.71136E-4 3.13446E-4 SPO1162 K02501 Histidine biosynthesis, PRPP => histidine Imidazoleglycerol phosphate synthase glutamine amidotransferase subunit HisH (HisH) (PDB:1OX4)
Ruegeria pomeroyi DSS-3 1163 7.32239E-5 3.92195E-5 1.07958E-4 1.14529E-4 SPO1163 K01693 Histidine biosynthesis, PRPP => histidine Imidazoleglycerol phosphate dehydratase HisB (HisB2) (PDB:1RHY)
Ruegeria pomeroyi DSS-3 1164 3.38179E-4 9.90856E-5 2.17745E-4 4.06585E-4 SPO1164 nan DNA-binding transcriptional regulator, Lrp family (Lrp) (PDB:1I1G)
Ruegeria pomeroyi DSS-3 1165 SPO1165 K07114 nan vWFA (von Willebrand factor type A) domain of Mg and Co chelatases (ChlD)
Ruegeria pomeroyi DSS-3 1166 9.67776E-4 0.002021289 0.001261484 0.001023914 SPO1166 nan Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (BioA) (PDB:1MLY)
Ruegeria pomeroyi DSS-3 1167 SPO_tRNA-Gly-2 nan
Ruegeria pomeroyi DSS-3 1168 SPO1168 nan
Ruegeria pomeroyi DSS-3 1169 SPO_tRNA-Gly-3 nan
Ruegeria pomeroyi DSS-3 1170 SPO_tRNA-Gly-4 nan
Ruegeria pomeroyi DSS-3 1171 0.029217277 0.057976346 0.02603156 0.026744932 SPO1171 K01958 Reductive citrate cycle (Arnon-Buchanan cycle) Pyruvate carboxylase (PycA) (PDB:5VYW)
Ruegeria pomeroyi DSS-3 1172 7.30077E-4 0.001124449 4.70381E-4 6.25574E-4 SPO1172 nan FMN-dependent dehydrogenase, includes L-lactate dehydrogenase and type II isopentenyl diphosphate isomerase (LldD) (PDB:6AI7)
Ruegeria pomeroyi DSS-3 1173 SPO1173 nan GGDEF domain, diguanylate cyclase (c-di-GMP synthetase) or its enzymatically inactive variants (GGDEF) (PDB:6D9M)
Ruegeria pomeroyi DSS-3 1174 4.47326E-5 4.77981E-4 5.41379E-5 5.18439E-5 SPO1174 K03657 nan Superfamily I DNA or RNA helicase (UvrD) (PDB:6PPR)
Ruegeria pomeroyi DSS-3 1175 SPO1175 nan Permease of the drug/metabolite transporter (DMT) superfamily (RhaT) (PDB:5I20)
Ruegeria pomeroyi DSS-3 1176 2.66075E-5 2.46854E-5 5.3215E-5 3.97339E-5 SPO1176 K03651 nan 3',5'-cyclic AMP phosphodiesterase CpdA (CpdA) (PDB:2ZO9)
Ruegeria pomeroyi DSS-3 1177 SPO1177 nan Uncharacterized conserved protein YjiS, DUF1127 family (YjiS)
Ruegeria pomeroyi DSS-3 1178 4.11062E-5 3.08947E-4 1.77579E-4 5.91929E-5 SPO1178 K03925 nan MraZ, DNA-binding transcriptional regulator and inhibitor of RsmH methyltransferase activity (MraZ) (PDB:1N0E)
Ruegeria pomeroyi DSS-3 1179 3.49252E-4 7.01729E-4 4.93874E-4 1.56513E-4 SPO1179 K03438 nan 16S rRNA C1402 N4-methylase RsmH (RmsH) (PDB:1M6Y)
Ruegeria pomeroyi DSS-3 1180 SPO1180 nan Predicted secreted (periplasmic) protein
Ruegeria pomeroyi DSS-3 1181 3.69196E-6 SPO1181 K03587 nan Cell division protein FtsI, peptidoglycan transpeptidase (Penicillin-binding protein 2) (FtsI) (PDB:6HZQ)
Ruegeria pomeroyi DSS-3 1182 2.86286E-4 5.95915E-4 2.19077E-4 1.71177E-4 SPO1182 K01928 nan UDP-N-acetylmuramyl tripeptide synthase (MurE) (PDB:1E8C)
Ruegeria pomeroyi DSS-3 1183 4.84082E-4 0.001033946 6.45443E-4 3.30612E-4 SPO1183 K01929 nan UDP-N-acetylmuramyl pentapeptide synthase (MurF) (PDB:4CVK)
Ruegeria pomeroyi DSS-3 1184 SPO1184 K01000 nan UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase (Rfe) (PDB:4J72)
Ruegeria pomeroyi DSS-3 1185 9.18738E-5 4.86911E-5 5.09265E-5 4.19798E-5 SPO1185 nan
Ruegeria pomeroyi DSS-3 1186 2.24664E-4 9.15299E-5 1.32155E-4 5.23726E-5 SPO1186 K18169 nan Tetratricopeptide (TPR) repeat (TPR) (PDB:3AS4)
Ruegeria pomeroyi DSS-3 1187 4.71398E-6 1.28256E-4 4.91041E-5 1.61061E-5 SPO1187 K01925 nan UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD) (PDB:1E0D)
Ruegeria pomeroyi DSS-3 1188 1.35266E-6 3.30062E-5 5.41063E-6 SPO1188 nan Predicted flavoprotein YhiN (YhiN) (PDB:3V76)
Ruegeria pomeroyi DSS-3 1189 SPO1189 nan Permease of the drug/metabolite transporter (DMT) superfamily (RhaT) (PDB:5I20)
Ruegeria pomeroyi DSS-3 1190 SPO1190 nan DNA-binding transcriptional regulator, HxlR family (HxlR) (PDB:1YYV)
Ruegeria pomeroyi DSS-3 1191 3.99403E-5 2.42285E-5 SPO1191 K00799 nan Glutathione S-transferase (GstA) (PDB:1A0F)
Ruegeria pomeroyi DSS-3 1192 SPO1192 nan
Ruegeria pomeroyi DSS-3 1193 SPO1193 K01821 Catechol meta-cleavage, catechol => acetyl-CoA / 4-methylcatechol => propanoyl-CoA Phenylpyruvate tautomerase PptA, 4-oxalocrotonate tautomerase family (PptA) (PDB:1BJP)
Ruegeria pomeroyi DSS-3 1194 1.77513E-5 SPO1194 K03588 nan Peptodoglycan polymerase FtsW/RodA/SpoVE (FtsW) (PDB:6BAR) (PUBMED:30692671)
Ruegeria pomeroyi DSS-3 1195 0.001962751 0.004722609 0.003703322 0.002354197 SPO1195 K02563 nan UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase (MurG) (PDB:1F0K)
Ruegeria pomeroyi DSS-3 1196 6.81455E-4 0.002486461 8.76324E-4 7.28302E-4 SPO1196 K01924 nan UDP-N-acetylmuramate-alanine ligase MurC and related ligases, MurC/Mpl family (MurC)
Ruegeria pomeroyi DSS-3 1197 SPO1197 nan Serine transporter YbeC, amino acid:H+ symporter family (PotE) (PDB:3LRB)
Ruegeria pomeroyi DSS-3 1198 SPO1198 nan
Ruegeria pomeroyi DSS-3 1199 SPO1199 nan
Ruegeria pomeroyi DSS-3 1200 1.60474E-5 6.10199E-6 3.62553E-5 2.02079E-5 SPO1200 K00075 nan UDP-N-acetylenolpyruvoylglucosamine reductase (MurB) (PDB:2MBR)
Ruegeria pomeroyi DSS-3 1201 3.051E-4 8.31904E-4 2.97921E-4 2.59634E-4 SPO1201 K01921 nan D-alanine-D-alanine ligase or related ATP-grasp enzyme (DdlA) (PDB:1E4E)
Ruegeria pomeroyi DSS-3 1202 9.52323E-5 6.55736E-6 6.55736E-6 SPO1202 K03589 nan Cell division septal protein FtsQ (FtsQ) (PDB:1YR1)
Ruegeria pomeroyi DSS-3 1203 1.91365E-4 4.15484E-5 1.68662E-5 SPO1203 K03590 nan Cell division ATPase FtsA (FtsA) (PDB:3WT0)
Ruegeria pomeroyi DSS-3 1204 0.001557358 0.019630931 0.009111439 0.004176597 SPO1204 K03531 nan Cell division GTPase FtsZ (FtsZ) (PDB:1FSZ)
Ruegeria pomeroyi DSS-3 1205 7.17881E-6 3.23046E-5 8.37527E-6 SPO1205 K02535 KDO2-lipid A biosynthesis, Raetz pathway, LpxL-LpxM type UDP-3-O-acyl-N-acetylglucosamine deacetylase (LpxC) (PDB:1P42)
Ruegeria pomeroyi DSS-3 1206 4.96969E-4 0.001927219 3.51939E-4 4.66673E-4 SPO1206 K05807 nan Outer membrane protein assembly factor BamD, BamD/ComL family (BamD) (PDB:2YHC)
Ruegeria pomeroyi DSS-3 1207 4.25139E-4 9.98129E-4 4.73154E-4 3.18437E-4 SPO1207 K03631 nan DNA repair ATPase RecN (RecN) (PDB:4AD8)
Ruegeria pomeroyi DSS-3 1208 3.78092E-6 2.1357E-5 9.4523E-7 9.4523E-7 SPO1208 K03281 nan H+/Cl- antiporter ClcA (ClcA) (PDB:1KPK)
Ruegeria pomeroyi DSS-3 1209 7.88448E-4 0.001097419 8.42758E-4 5.72346E-4 SPO1209 nan Microcystin degradation protein MlrC, contains DUF1485 domain (PDB:3IUU)
Ruegeria pomeroyi DSS-3 1210 5.71415E-4 0.005318145 0.002389083 6.13991E-4 SPO1210 K02035 nan ABC-type transport system, periplasmic component (DdpA) (PDB:3RQT)
Ruegeria pomeroyi DSS-3 1211 1.71618E-6 SPO1211 K02033 nan ABC-type dipeptide/oligopeptide/nickel transport system, permease component (DppB)
Ruegeria pomeroyi DSS-3 1212 SPO1212 K02034 nan ABC-type dipeptide/oligopeptide/nickel transport system, permease component (DppC)
Ruegeria pomeroyi DSS-3 1213 6.71658E-5 3.11365E-4 1.74499E-4 1.46843E-4 SPO1213 K02031 nan ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain (GsiA)
Ruegeria pomeroyi DSS-3 1214 4.58826E-5 4.25105E-4 5.1765E-5 6.07061E-5 SPO1214 K01451 nan Metal-dependent amidase/aminoacylase/carboxypeptidase (AbgB) (PDB:3RAM) (PUBMED:17307853)
Ruegeria pomeroyi DSS-3 1215 2.7532E-4 6.55312E-4 3.58816E-4 2.28824E-4 SPO1215 K01295 nan Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase or related deacylase (ArgE) (PDB:1CG2)
Ruegeria pomeroyi DSS-3 1216 SPO1216 nan
Ruegeria pomeroyi DSS-3 1217 SPO1217 nan Transcriptional regulator, contains XRE-family HTH domain (HipB) (PDB:1ADR)
Ruegeria pomeroyi DSS-3 1218 2.59537E-6 4.93644E-6 1.03815E-6 1.03815E-6 SPO1218 nan Site-specific recombinase XerD (XerD) (PDB:1A0P)
Ruegeria pomeroyi DSS-3 1219 SPO1219 nan Site-specific recombinase XerD (XerD) (PDB:1A0P)
Ruegeria pomeroyi DSS-3 1220 2.25722E-4 5.49179E-5 1.86162E-5 5.81757E-5 SPO1220 nan
Ruegeria pomeroyi DSS-3 1221 2.72926E-4 6.44874E-4 3.82484E-4 2.34094E-4 SPO1221 nan
Ruegeria pomeroyi DSS-3 1222 SPO1222 K06400 nan Site-specific DNA recombinase SpoIVCA/DNA invertase PinE (SpoIVCA) (PDB:1GDT)
Ruegeria pomeroyi DSS-3 1223 SPO1223 nan
Ruegeria pomeroyi DSS-3 1224 SPO1224 nan Type IV secretory pathway, VirD4 component, TraG/TraD family ATPase (VirD4) (PDB:1GL6)
Ruegeria pomeroyi DSS-3 1225 SPO1225 nan
Ruegeria pomeroyi DSS-3 1226 SPO1226 nan Predicted periplasmic protein
Ruegeria pomeroyi DSS-3 1227 4.61495E-6 1.15374E-4 SPO1226a nan
Ruegeria pomeroyi DSS-3 1228 SPO1227 nan
Ruegeria pomeroyi DSS-3 1229 SPO1228 nan
Ruegeria pomeroyi DSS-3 1230 SPO1229 nan
Ruegeria pomeroyi DSS-3 1231 7.15077E-7 3.57538E-6 7.15077E-7 SPO1230 nan Ribosomal protein S1 (RpsA) (PDB:4NNH)!!!Type IV secretory pathway, VirD4 component, TraG/TraD family ATPase (VirD4) (PDB:1GL6)
Ruegeria pomeroyi DSS-3 1232 SPO1231 nan
Ruegeria pomeroyi DSS-3 1233 SPO1232 K03746 nan DNA-binding protein H-NS (Hns) (PDB:1HNR)
Ruegeria pomeroyi DSS-3 1234 2.7532E-5 2.66771E-5 1.34817E-5 2.76132E-6 SPO1233 nan Superfamily II DNA or RNA helicase (SSL2) (PDB:6JDE)
Ruegeria pomeroyi DSS-3 1235 2.51128E-4 3.64085E-4 3.35416E-4 6.37233E-5 SPO1234 nan
Ruegeria pomeroyi DSS-3 1236 1.79998E-4 3.56821E-4 2.08467E-4 5.47954E-5 SPO1235 nan Uncharacterized conserved protein YydD, contains DUF2326 domain (YydB)
Ruegeria pomeroyi DSS-3 1237 3.0375E-6 3.33157E-6 3.0375E-6 4.85999E-6 SPO1236 nan
Ruegeria pomeroyi DSS-3 1238 3.14896E-5 1.57244E-5 1.25958E-6 5.87807E-6 SPO1237 K02238 nan DNA uptake channel protein ComEC C-terminal domain, metallo-beta-lactamase superfamily (ComEC)
Ruegeria pomeroyi DSS-3 1239 SPO_tRNA-Cys-2 nan
Ruegeria pomeroyi DSS-3 1240 0.00113885 9.21592E-4 0.001827222 8.47811E-4 SPO1239 K00573 nan Protein-L-isoaspartate O-methyltransferase (Pcm) (PDB:3LBF) (PUBMED:24909784)
Ruegeria pomeroyi DSS-3 1241 0.003342777 0.009282358 0.003591382 0.003219445 SPO1240 K12340 Pertussis pathogenicity signature, T1SS Outer membrane protein TolC (TolC) (PDB:1EK9)
Ruegeria pomeroyi DSS-3 1242 2.2216E-5 5.49179E-5 5.9835E-5 1.30334E-5 SPO1241 nan
Ruegeria pomeroyi DSS-3 1243 2.54773E-5 3.71233E-5 1.01909E-5 2.90631E-5 SPO1242 K02232 Cobalamin biosynthesis, cobyrinate a,c-diamide => cobalamin Cobyric acid synthase (CobQ)
Ruegeria pomeroyi DSS-3 1244 4.44866E-5 1.30506E-4 8.48824E-5 8.48824E-5 SPO1243 nan
Ruegeria pomeroyi DSS-3 1245 6.35814E-4 9.18786E-4 0.00127848 6.84271E-4 SPO1244 K02356 nan Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) (Efp) (PDB:1UEB)
Ruegeria pomeroyi DSS-3 1246 1.59439E-5 SPO1245 nan cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases (Crp) (PDB:1FT9)!!!ABC-type multidrug transport system, ATPase and permease component (MdlB) (PDB:2HYD)
Ruegeria pomeroyi DSS-3 1247 3.82625E-4 1.65741E-4 2.73839E-4 3.25606E-4 SPO1246 K06980 nan Folate-binding protein YgfZ, synthesis and repair of Fe-S clusters (YgfZ) (PDB:1NRK) (PUBMED:27941785;22081392)
Ruegeria pomeroyi DSS-3 1248 1.34274E-6 SPO1247 nan Glycosyltransferase involved in cell wall bisynthesis (WcaA) (PDB:5MLZ)
Ruegeria pomeroyi DSS-3 1249 9.46034E-5 1.40187E-4 7.3998E-5 4.75864E-5 SPO1249 K06192 nan Intermembrane transporter PqiABC subunit PqiB (PqiB) (PDB:5UVN) (PUBMED:27795327;28819315)
Ruegeria pomeroyi DSS-3 1250 4.30438E-5 1.48895E-5 4.35384E-5 1.68217E-5 SPO1250 K09857 nan Intermembrane transporter PqiABC lipoprotein subunit PqiC (PqiC) (PDB:6OSX) (PUBMED:27795327)
Ruegeria pomeroyi DSS-3 1251 SPO1251 nan
Ruegeria pomeroyi DSS-3 1252 SPO1252 nan
Ruegeria pomeroyi DSS-3 1253 SPO1252a K10947 nan DNA-binding transcriptional regulator, PadR family (PadR) (PDB:1XMA) (PUBMED:19096365)
Ruegeria pomeroyi DSS-3 1254 1.33505E-4 0.002681128 2.86101E-4 4.34345E-4 SPO1253 K02622 nan DNA gyrase/topoisomerase IV, subunit B (GyrB) (PDB:1EI1)
Ruegeria pomeroyi DSS-3 1255 3.48464E-5 1.11508E-5 2.78771E-5 SPO1254 nan
Ruegeria pomeroyi DSS-3 1256 2.54976E-4 2.37592E-4 3.16268E-4 3.54678E-4 SPO1255 nan Alkylhydroperoxidase family enzyme, contains CxxC motif (YciW) (PDB:1GU9)
Ruegeria pomeroyi DSS-3 1257 7.79068E-4 0.001527415 4.30509E-4 1.96363E-4 SPO1256 K22468 nan Polyphosphate kinase 2, PPK2 family (PPK2) (PDB:3CZP)
Ruegeria pomeroyi DSS-3 1258 9.73913E-5 1.66717E-4 1.89372E-4 9.91947E-5 SPO1257 K00799 nan Glutathione S-transferase (GstA) (PDB:1A0F)
Ruegeria pomeroyi DSS-3 1259 1.78161E-4 7.03763E-4 2.55916E-4 3.07344E-4 SPO1258 K22369 nan 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase MenH and related esterases, alpha/beta hydrolase fold (MenH) (PDB:4MYS)
Ruegeria pomeroyi DSS-3 1260 2.34247E-5 7.05753E-5 3.03653E-5 1.30137E-5 SPO1259 nan Uncharacterized protein, contains DUF2461 domain
Ruegeria pomeroyi DSS-3 1261 SPO1260 K03327 nan Na+-driven multidrug efflux pump, DinF/NorM/MATE family (NorM) (PDB:3VVN) (PUBMED:29915058)
Ruegeria pomeroyi DSS-3 1262 SPO1261 nan DNA-binding transcriptional regulator, MarR family (MarR) (PDB:1JGS)
Ruegeria pomeroyi DSS-3 1263 SPO1262 nan Permease of the drug/metabolite transporter (DMT) superfamily (RhaT) (PDB:5I20)
Ruegeria pomeroyi DSS-3 1264 8.46479E-4 1.40962E-4 7.41873E-4 6.90947E-4 SPO1263 nan
Ruegeria pomeroyi DSS-3 1265 8.51914E-4 0.003847152 0.001721218 0.001059915 SPO1264 K00812 nan Aspartate/methionine/tyrosine aminotransferase (AspB) (PDB:2O0R)
Ruegeria pomeroyi DSS-3 1266 3.82313E-4 3.20802E-4 7.54769E-4 4.63282E-4 SPO1265 K22300 nan Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains (aMBF1) (PDB:2MEZ) (PUBMED:24825021)
Ruegeria pomeroyi DSS-3 1267 2.4408E-5 SPO1266 K09159 nan Succinate dehydrogenase flavin-adding protein, antitoxin component of the CptAB toxin-antitoxin module (SdhE) (PDB:1PUZ)
Ruegeria pomeroyi DSS-3 1268 SPO1267 nan DNA-binding transcriptional regulator, MarR family (MarR) (PDB:1JGS)
Ruegeria pomeroyi DSS-3 1269 SPO1268 nan
Ruegeria pomeroyi DSS-3 1270 SPO1269 nan
Ruegeria pomeroyi DSS-3 1271 3.48071E-5 2.51385E-5 7.92829E-5 SPO1270 K01759 nan Catechol 2,3-dioxygenase or related enzyme, vicinal oxygen chelate (VOC) family (GloA) (PDB:3R4Q) (PUBMED:11830595)
Ruegeria pomeroyi DSS-3 1272 1.17597E-6 9.10983E-5 4.70389E-6 6.66383E-6 SPO1271 K07280 nan
Ruegeria pomeroyi DSS-3 1273 9.23353E-4 0.007904108 5.68705E-4 0.001238459 SPO1272 nan
Ruegeria pomeroyi DSS-3 1274 0.002063058 0.008284679 0.003310834 0.002830757 SPO1273 K03465 Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP Thymidylate synthase ThyX, FAD-dependent family (ThyX) (PDB:1KQ4)
Ruegeria pomeroyi DSS-3 1275 7.39635E-6 6.10199E-6 1.57172E-5 7.39635E-6 SPO1274 nan
Ruegeria pomeroyi DSS-3 1276 0.006210567 0.002970665 0.005820219 0.003332762 SPO1275 K03704 nan Cold shock protein, CspA family (CspC) (PDB:1C9O)
Ruegeria pomeroyi DSS-3 1277 2.26556E-5 1.04606E-4 2.61514E-5 SPO1276 nan Arsenate reductase or related protein, glutaredoxin family (ArsC) (PDB:1I9D)
Ruegeria pomeroyi DSS-3 1278 SPO1277 nan
Ruegeria pomeroyi DSS-3 1279 2.49627E-5 SPO1278 K15977 nan Uncharacterized membrane protein YphA, DoxX/SURF4 family (DoxX)
Ruegeria pomeroyi DSS-3 1280 8.44891E-6 SPO1279 nan Uncharacterized conserved protein, DUF2063 family (PDB:3DEE)
Ruegeria pomeroyi DSS-3 1281 SPO1280 K09930 nan Uncharacterized conserved protein, UPF0276 family (PDB:3BWW)
Ruegeria pomeroyi DSS-3 1282 2.13273E-5 4.5644E-5 2.50596E-4 7.46457E-5 SPO1281 nan Uncharacterized membrane protein
Ruegeria pomeroyi DSS-3 1283 0.002902258 0.025471464 0.002938277 0.003641418 SPO1282 K01868 nan Threonyl-tRNA synthetase (ThrS) (PDB:1NYQ)
Ruegeria pomeroyi DSS-3 1284 SPO1283 nan Uncharacterized conserved protein, MAPEG superfamily
Ruegeria pomeroyi DSS-3 1285 9.78094E-5 4.00211E-5 1.33404E-5 SPO1284 nan DNA-binding transcriptional regulator, ArsR family (ArsR) (PDB:3F6V)!!!Chalcone/flavanone-binding protein YndB, AHSA1/START/SRPBCC domain (YndB) (PDB:2KTE) (PUBMED:20818668)
Ruegeria pomeroyi DSS-3 1286 1.61196E-4 8.9496E-5 1.60826E-4 9.93114E-5 SPO1285 K06889 nan 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase MenH and related esterases, alpha/beta hydrolase fold (MenH) (PDB:4MYS)
Ruegeria pomeroyi DSS-3 1287 6.65671E-6 6.10199E-6 SPO1286 nan Esterase/lipase (YvaK) (PDB:4DIU)
Ruegeria pomeroyi DSS-3 1288 SPO1287 K07032 nan Catechol 2,3-dioxygenase or related enzyme, vicinal oxygen chelate (VOC) family (GloA) (PDB:3R4Q) (PUBMED:11830595)
Ruegeria pomeroyi DSS-3 1289 3.39968E-5 6.53787E-6 1.04606E-5 SPO1288 nan
Ruegeria pomeroyi DSS-3 1290 1.37295E-4 4.74329E-5 2.23739E-4 6.8843E-5 SPO1289 nan 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase MenH and related esterases, alpha/beta hydrolase fold (MenH) (PDB:4MYS)
Ruegeria pomeroyi DSS-3 1291 2.05234E-4 1.56618E-4 1.36823E-4 1.03796E-4 SPO1290 nan Uncharacterized conserved protein (PDB:1X6M)
Ruegeria pomeroyi DSS-3 1292 0.001256377 0.003416595 0.001320706 0.001079361 SPO1291 K05973 nan Poly-beta-hydroxyalkanoate depolymerase (DepA)
Ruegeria pomeroyi DSS-3 1293 7.98598E-4 0.003816847 0.001170056 7.88682E-4 SPO1292 K03821 nan Poly-beta-hydroxybutyrate synthase (PhaC) (PDB:5XAV)
Ruegeria pomeroyi DSS-3 1294 0.011595838 0.010590304 0.044504516 0.008423217 SPO1293 nan
Ruegeria pomeroyi DSS-3 1295 0.001736593 0.001331669 0.002220464 0.00168019 SPO1294 nan Polyhydroxyalkanoate (PHA) synthesis regulator protein, binds DNA and PHA
Ruegeria pomeroyi DSS-3 1296 7.47139E-5 4.45961E-4 3.78891E-5 1.2133E-4 SPO1295 nan dTDP-4-amino-4,6-dideoxygalactose transaminase (WecE) (PDB:4PIW) (PUBMED:15271350)
Ruegeria pomeroyi DSS-3 1297 SPO1298 nan Pyridoxal reductase PdxI or related oxidoreductase, aldo/keto reductase family (PdxI) (PDB:1LQA) (PUBMED:32253339)
Ruegeria pomeroyi DSS-3 1298 1.99701E-6 SPO1299 nan DNA-binding transcriptional regulator, LysR family (LysR) (PDB:2FYI)
Ruegeria pomeroyi DSS-3 1299 2.55757E-4 3.47832E-4 3.61664E-4 2.0007E-4 SPO1300 K01915 nan Glutamine synthetase (GlnA) (PDB:1F1H)
Ruegeria pomeroyi DSS-3 1300 7.41149E-5 2.66353E-5 4.04999E-5 6.96599E-5 SPO1301 K22314 nan GMP synthase, glutamine amidotransferase domain (GuaA1) (PDB:4WIM)
Ruegeria pomeroyi DSS-3 1301 8.00374E-6 1.51372E-4 4.06343E-5 3.07836E-5 SPO1302 K01915 nan Glutamine synthetase (GlnA) (PDB:1F1H)
Ruegeria pomeroyi DSS-3 1302 5.69461E-5 5.41935E-5 7.07276E-5 6.03265E-5 SPO1303 nan Glycine/D-amino acid oxidase (deaminating) (DadA) (PDB:3AWI)
Ruegeria pomeroyi DSS-3 1303 8.16623E-6 2.04156E-6 8.16623E-6 SPO1304 K02029 nan ABC-type arginine/histidine transport system, permease component (ArtM)
Ruegeria pomeroyi DSS-3 1304 1.67546E-5 1.02485E-4 1.67546E-5 2.9786E-5 SPO1305 nan ABC-type arginine transport system, permease component (ArtQ)
Ruegeria pomeroyi DSS-3 1305 0.002955396 0.004363992 0.004809722 0.002196716 SPO1306 K02030 nan ABC-type amino acid transport/signal transduction system, periplasmic component/domain (HisJ) (PDB:1GGG)
Ruegeria pomeroyi DSS-3 1306 1.44745E-4 1.72884E-4 1.26297E-4 1.14944E-4 SPO1307 K02028 nan ABC-type histidine transport system, ATPase component (HisP) (PDB:1B0U)
Ruegeria pomeroyi DSS-3 1307 1.97704E-5 2.19672E-6 SPO1308 nan ABC-type phosphate/phosphonate transport system, periplasmic component (PhnD) (PDB:3S4U)
Ruegeria pomeroyi DSS-3 1308 3.21933E-4 1.97201E-4 2.65121E-4 6.42602E-4 SPO1309 nan Tellurite resistance protein TerB (TerB2) (PDB:2JXU) (PUBMED:23044854)
Ruegeria pomeroyi DSS-3 1309 2.72721E-4 6.13711E-5 2.95137E-4 2.45325E-4 SPO1310 nan Tellurite resistance protein TerB (TerB2) (PDB:2JXU) (PUBMED:23044854)
Ruegeria pomeroyi DSS-3 1310 3.53853E-4 1.3647E-4 2.50999E-4 3.05728E-4 SPO1310a nan Uncharacterized conserved protein, DUF1330 family
Ruegeria pomeroyi DSS-3 1311 1.30152E-4 1.07037E-5 3.59771E-5 6.93087E-5 SPO1311 K01273 nan Zn-dependent dipeptidase, microsomal dipeptidase homolog (PDB:1ITQ) (PUBMED:14499931)
Ruegeria pomeroyi DSS-3 1312 7.31904E-4 0.001146482 6.74008E-4 6.44558E-4 SPO1312 K01937 Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP CTP synthase (UTP-ammonia lyase) (PyrG) (PDB:1S1M)
Ruegeria pomeroyi DSS-3 1313 4.0848E-5 1.56282E-4 1.22544E-4 4.0848E-5 SPO1313 K03075 nan Protein translocase subunit SecG (SecG) (PDB:2AKH)
Ruegeria pomeroyi DSS-3 1314 5.72062E-4 2.01086E-4 3.08689E-4 4.1009E-4 SPO1314 K01721 nan
Ruegeria pomeroyi DSS-3 1315 1.33617E-4 6.7177E-5 2.45169E-5 1.47919E-4 SPO1315 K20807 nan
Ruegeria pomeroyi DSS-3 1316 SPO1316 nan
Ruegeria pomeroyi DSS-3 1317 SPO1317 nan
Ruegeria pomeroyi DSS-3 1318 0.003729308 0.007353885 0.00505202 0.004149919 SPO1318 K01939 Adenine ribonucleotide biosynthesis, IMP => ADP,ATP Adenylosuccinate synthase (PurA) (PDB:1ADE)
Ruegeria pomeroyi DSS-3 1319 SPO1319 nan
Ruegeria pomeroyi DSS-3 1320 1.68271E-4 0.001374109 2.47543E-4 1.65473E-4 SPO1320 nan Midasin, AAA ATPase with  vWA domain, involved in ribosome maturation (MDN1) (PDB:6HYP)
Ruegeria pomeroyi DSS-3 1321 4.89486E-5 7.1884E-5 1.01478E-4 6.12852E-5 SPO1321 K00949 Thiamine biosynthesis, plants, AIR (+ NAD+) => TMP/thiamine/TPP Thiamine pyrophosphokinase (ThiN) (PDB:1IG0)
Ruegeria pomeroyi DSS-3 1322 SPO1322 K15270 nan Permease of the drug/metabolite transporter (DMT) superfamily (RhaT) (PDB:5I20)
Ruegeria pomeroyi DSS-3 1323 3.6652E-5 1.51207E-4 1.64233E-5 4.40625E-5 SPO1323 K01752 nan L-serine deaminase (SdaA) (PDB:4RQO)
Ruegeria pomeroyi DSS-3 1324 SPO1324 K00799 nan Glutathione S-transferase (GstA) (PDB:1A0F)
Ruegeria pomeroyi DSS-3 1325 SPO1325 nan Flavodoxin/ferredoxin--NADP reductase (Fpr) (PDB:3OZU)
Ruegeria pomeroyi DSS-3 1326 SPO1326 K06075 nan DNA-binding transcriptional regulator, MarR family (MarR) (PDB:1JGS)
Ruegeria pomeroyi DSS-3 1327 3.35376E-5 7.89327E-5 2.86467E-5 1.88649E-5 SPO1327 K01807 Pentose phosphate pathway (Pentose phosphate cycle) Ribose 5-phosphate isomerase (RpiA) (PDB:1KS2)
Ruegeria pomeroyi DSS-3 1328 0.001057656 0.003103936 0.001231603 0.001016548 SPO1328 K00383 nan Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex or glutathione oxidoreductase (Lpd) (PDB:6QKG)
Ruegeria pomeroyi DSS-3 1329 0.00408156 0.006233222 0.006137516 0.003661671 SPO1329 K04088 nan Regulator of protease activity HflC, stomatin/prohibitin superfamily (HflC)
Ruegeria pomeroyi DSS-3 1330 0.00560974 0.007790231 0.007371453 0.004626187 SPO1330 K04087 nan Regulator of protease activity HflC, stomatin/prohibitin superfamily (HflC)
Ruegeria pomeroyi DSS-3 1331 3.20782E-5 1.51794E-4 1.83915E-5 3.29336E-5 SPO1331 nan
Ruegeria pomeroyi DSS-3 1332 SPO1332 K09937 nan Uncharacterized conserved protein YjeT, DUF2065 family (yjeT)
Ruegeria pomeroyi DSS-3 1333 0.002149724 0.008469773 0.002530752 0.001958927 SPO1333 K04771 nan Periplasmic serine protease, S1-C subfamily, contain C-terminal PDZ domain (DegQ) (PDB:2HGA) (PUBMED:29686141)
Ruegeria pomeroyi DSS-3 1334 4.05132E-5 3.60118E-5 1.80059E-5 SPO1334 nan Uncharacterized protein CV0675, UCP033623 family
Ruegeria pomeroyi DSS-3 1335 3.95805E-5 5.49179E-5 5.07125E-5 9.89512E-6 SPO1335 K10914 nan cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases (Crp) (PDB:1FT9)
Ruegeria pomeroyi DSS-3 1336 2.70531E-6 SPO1336 K06190 nan Intracellular septation protein A (YciB)
Ruegeria pomeroyi DSS-3 1337 SPO1337 nan Permease of the drug/metabolite transporter (DMT) superfamily (RhaT) (PDB:5I20)
Ruegeria pomeroyi DSS-3 1338 1.39918E-5 SPO1337a nan
Ruegeria pomeroyi DSS-3 1339 3.41477E-4 1.56763E-4 1.84937E-4 2.06529E-4 SPO1339 K03110 nan Signal recognition particle GTPase FtsY (FtsY) (PDB:4AK9)
Ruegeria pomeroyi DSS-3 1340 SPO1340 nan Uncharacterized membrane protein YhhN (YhhN)
Ruegeria pomeroyi DSS-3 1341 SPO1341 K00496 nan Fatty acid desaturase (DesA)
Ruegeria pomeroyi DSS-3 1342 SPO1342 nan
Ruegeria pomeroyi DSS-3 1343 6.44575E-6 1.03132E-5 4.12529E-5 SPO1343 K00799 nan Glutathione S-transferase (GstA) (PDB:1A0F)
Ruegeria pomeroyi DSS-3 1344 1.93694E-5 2.30573E-5 2.84844E-5 3.8359E-5 SPO1344 K03601 nan Exonuclease VII, large subunit (XseA)
Ruegeria pomeroyi DSS-3 1345 5.23028E-4 0.002302756 0.001299288 6.92576E-4 SPO1345 K01945 Inosine monophosphate biosynthesis, PRPP + glutamine => IMP Phosphoribosylamine-glycine ligase (PurD) (PDB:1GSO)
Ruegeria pomeroyi DSS-3 1346 4.57649E-5 8.29048E-5 2.69205E-5 2.60232E-5 SPO1346 nan DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains (CitB) (PDB:1A04)
Ruegeria pomeroyi DSS-3 1347 SPO1347 nan
Ruegeria pomeroyi DSS-3 1348 6.26167E-4 0.001083734 8.55419E-4 8.67395E-4 SPO1348 K04755 nan Ferredoxin (Fdx) (PDB:1KRH)
Ruegeria pomeroyi DSS-3 1349 1.56908E-5 9.3769E-5 5.02106E-5 8.05462E-5 SPO1349 nan
Ruegeria pomeroyi DSS-3 1350 SPO1350 nan
Ruegeria pomeroyi DSS-3 1351 7.74537E-4 0.001203217 5.81076E-4 3.58723E-4 SPO1351 K10764 nan Cystathionine beta-lyase/cystathionine gamma-synthase (MetC) (PDB:1CL1)
Ruegeria pomeroyi DSS-3 1352 3.06762E-5 4.79835E-4 3.84076E-4 1.16719E-4 SPO1352 K09007 Tetrahydrofolate biosynthesis, GTP => THF GTP cyclohydrolase FolE2 (FolE2) (PDB:2R5R) (PUBMED:19767425)
Ruegeria pomeroyi DSS-3 1353 0.001979775 0.004941861 0.003067513 0.003675352 SPO1352a nan
Ruegeria pomeroyi DSS-3 1354 SPO1353 K03498 nan Trk-type K+ transport system, membrane component (TrkG) (PDB:3PJZ)
Ruegeria pomeroyi DSS-3 1355 8.04861E-4 0.003291955 9.5827E-4 0.001192609 SPO1354 nan Periplasmic serine protease, S1-C subfamily, contain C-terminal PDZ domain (DegQ) (PDB:2HGA) (PUBMED:29686141)
Ruegeria pomeroyi DSS-3 1356 3.22267E-4 2.06994E-4 2.41921E-4 2.18377E-4 SPO1355 K01878 nan Glycyl-tRNA synthetase, alpha subunit (GlyQ) (PDB:1J5W)
Ruegeria pomeroyi DSS-3 1357 6.0217E-6 5.26554E-5 7.22604E-6 7.22604E-6 SPO1356 nan 16S rRNA A1518 and A1519 N6-dimethyltransferase RsmA/KsgA/DIM1 (may also have DNA glycosylase/AP lyase activity) (RsmA) (PDB:1QYR)
Ruegeria pomeroyi DSS-3 1358 6.47021E-5 2.0631E-4 1.02577E-4 7.36446E-5 SPO1356a nan
Ruegeria pomeroyi DSS-3 1359 SPO1357 K03312 nan Na+/glutamate symporter (GltS)
Ruegeria pomeroyi DSS-3 1360 0.001052406 0.003838884 9.56642E-4 0.001362362 SPO1358 K01879 nan Glycyl-tRNA synthetase, beta subunit (GlyS)
Ruegeria pomeroyi DSS-3 1361 0.001563445 0.006247722 0.001573795 0.001475905 SPO1359 K01006 CAM (Crassulacean acid metabolism), light Phosphoenolpyruvate synthase/pyruvate phosphate dikinase (PpsA) (PDB:5HV6)
Ruegeria pomeroyi DSS-3 1362 SPO1360 K01449 nan Cell wall hydrolase CwlJ, involved in spore germination (CwlJ) (PDB:4F55)
Ruegeria pomeroyi DSS-3 1363 1.07917E-5 4.79632E-6 4.79632E-6 SPO1361 K22552 nan Multicopper oxidase with three cupredoxin domains (includes cell division protein FtsP and spore coat protein CotA) (SufI) (PDB:2YXV)
Ruegeria pomeroyi DSS-3 1364 3.051E-5 1.41369E-4 2.15364E-5 2.15364E-5 SPO1362 K01633 Tetrahydrofolate biosynthesis, GTP => THF Dihydroneopterin aldolase (FolB) (PDB:1B9L)
Ruegeria pomeroyi DSS-3 1365 8.32089E-6 1.21365E-5 8.32089E-6 8.32089E-6 SPO1363 K00796 Tetrahydrofolate biosynthesis, GTP => THF Dihydropteroate synthase (FolP) (PDB:1AD1)
Ruegeria pomeroyi DSS-3 1366 4.68886E-4 0.002019319 8.31124E-4 6.50924E-4 SPO1364 K03431 UDP-N-acetyl-D-glucosamine biosynthesis, prokaryotes, glucose => UDP-GlcNAc Phosphomannomutase (ManB) (PDB:6MNV)
Ruegeria pomeroyi DSS-3 1367 3.82634E-5 1.53616E-5 SPO1364a nan Uncharacterized conserved protein, phosphatidylethanolamine-binding protein (PEBP) family (PEBP) (PDB:1A44)
Ruegeria pomeroyi DSS-3 1368 SPO1365 nan Permease of the drug/metabolite transporter (DMT) superfamily (RhaT) (PDB:5I20)
Ruegeria pomeroyi DSS-3 1369 0.003957319 0.025834369 0.011576368 0.006349477 SPO1366 K00053 Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine Ketol-acid reductoisomerase (IlvC) (PDB:1NP3)
Ruegeria pomeroyi DSS-3 1370 1.34274E-6 SPO1367 nan DNA-binding transcriptional regulator, Lrp family (Lrp) (PDB:1I1G)
Ruegeria pomeroyi DSS-3 1371 1.23411E-6 SPO1368 K03719 nan DNA-binding transcriptional regulator, Lrp family (Lrp) (PDB:1I1G)
Ruegeria pomeroyi DSS-3 1372 8.72089E-5 4.97001E-5 5.49965E-5 8.64232E-5 SPO1369 K05836 nan DNA-binding transcriptional regulator, GntR family (MngR) (PDB:2WV0)
Ruegeria pomeroyi DSS-3 1373 7.87889E-4 0.001263695 8.93331E-4 6.58527E-4 SPO1370 nan Archaeal aspartate aminotransferase or a related aminotransferase, includes purine catabolism protein PucG (PucG) (PDB:3NNK)
Ruegeria pomeroyi DSS-3 1374 1.68342E-4 2.61655E-4 5.92874E-4 2.92067E-4 SPO1371 K03185 Ubiquinone biosynthesis, prokaryotes, chorismate (+ polyprenyl-PP) => ubiquinol 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases (UbiH) (PDB:1BF3)
Ruegeria pomeroyi DSS-3 1375 SPO1372 nan
Ruegeria pomeroyi DSS-3 1376 2.63017E-6 1.05207E-6 SPO1373 K02238 nan DNA uptake channel protein ComEC C-terminal domain, metallo-beta-lactamase superfamily (ComEC)
Ruegeria pomeroyi DSS-3 1377 1.66807E-5 5.81946E-5 4.8759E-5 1.79638E-5 SPO1374 K07025 nan FMN and 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB, HAD superfamily (riboflavin biosynthesis) (YigB) (PDB:4JB3) (PUBMED:24123841)
Ruegeria pomeroyi DSS-3 1378 4.64006E-4 4.82834E-4 2.44927E-4 4.98329E-4 SPO1375 K05799 nan DNA-binding transcriptional regulator, GntR family (GntR) (PDB:3FMS)
Ruegeria pomeroyi DSS-3 1379 SPO1376 K20327 nan Glycosyltransferase, catalytic subunit of cellulose synthase and poly-beta-1,6-N-acetylglucosamine synthase (BcsA) (PDB:4HG6)
Ruegeria pomeroyi DSS-3 1380 6.54627E-4 0.002399269 0.001346054 0.00101249 SPO1377 K01956 Uridine monophosphate biosynthesis, glutamine (+ PRPP) => UMP Carbamoylphosphate synthase small subunit (CarA) (PDB:1C30)
Ruegeria pomeroyi DSS-3 1381 2.5732E-4 3.39265E-4 6.88489E-4 6.17107E-4 SPO1378 K09117 nan Uncharacterized conserved protein YqeY, may have tRNA amino acid amidase activity (YqeY) (PDB:1NG6)
Ruegeria pomeroyi DSS-3 1382 SPO1379 K04517 Tyrosine biosynthesis, chorismate => HPP => tyrosine Prephenate dehydrogenase (TyrA) (PDB:2F1K)
Ruegeria pomeroyi DSS-3 1383 SPO1380 nan
Ruegeria pomeroyi DSS-3 1384 SPO1381 nan Uncharacterized membrane protein
Ruegeria pomeroyi DSS-3 1385 SPO1382 nan
Ruegeria pomeroyi DSS-3 1386 6.81501E-5 1.58007E-4 9.60068E-5 1.47243E-4 SPO1383 K02274 Cytochrome c oxidase, prokaryotes Heme/copper-type cytochrome/quinol oxidase, subunit 1 (CyoB) (PDB:1AR1)
Ruegeria pomeroyi DSS-3 1387 1.43576E-5 2.99272E-5 1.43576E-5 1.43576E-5 SPO1384 nan DNA-binding transcriptional regulator, MarR family (MarR) (PDB:1JGS)
Ruegeria pomeroyi DSS-3 1388 1.43764E-6 1.43764E-6 SPO1385 nan Nitroreductase (NfnB) (PDB:1F5V)
Ruegeria pomeroyi DSS-3 1389 4.63619E-4 1.96164E-4 7.54789E-4 4.31119E-4 SPO1386 K02503 nan Purine nucleoside phosphoramidase/Ap4A hydrolase, histidine triade (HIT) family (HinT) (PDB:1AV5) (PUBMED:20934431)
Ruegeria pomeroyi DSS-3 1390 SPO1387 K16264 nan Co/Zn/Cd efflux system component (CzcD)
Ruegeria pomeroyi DSS-3 1391 9.30812E-7 9.30812E-7 9.30812E-7 SPO1388 nan 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase MenH and related esterases, alpha/beta hydrolase fold (MenH) (PDB:4MYS)!!!DNA-binding transcriptional regulator, CsgD family (CsgD)
Ruegeria pomeroyi DSS-3 1392 1.27125E-5 4.06799E-5 2.28825E-5 SPO1389 K03801 Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H Lipoate-protein ligase B (LipB) (PDB:2QHT) (PUBMED:19798051)
Ruegeria pomeroyi DSS-3 1393 6.26917E-5 3.20424E-4 6.51995E-5 2.17331E-5 SPO1390 K07396 nan Predicted dithiol-disulfide isomerase, DsbA/YjbH family (virulence, stress resistance) (FrnE) (PDB:6GHB)
Ruegeria pomeroyi DSS-3 1394 SPO_tRNA-Leu-2 nan
Ruegeria pomeroyi DSS-3 1395 SPO1392 nan Alkylhydroperoxidase family enzyme, contains CxxC motif (YciW) (PDB:1GU9)
Ruegeria pomeroyi DSS-3 1396 3.34865E-6 SPO1393 nan DNA-binding transcriptional regulator, IscR family (IscR) (PDB:1XD7)
Ruegeria pomeroyi DSS-3 1397 SPO1394 K01286 nan CubicO group peptidase, beta-lactamase class C family (AmpC) (PDB:1BLS)!!!Ca2+-binding protein, RTX toxin-related (PDB:1AF0) (PUBMED:15135544)
Ruegeria pomeroyi DSS-3 1398 SPO1395 nan AraC-type DNA-binding domain and AraC-containing proteins (AraC) (PDB:1BL0)
Ruegeria pomeroyi DSS-3 1399 SPO1396 K08217 nan Predicted arabinose efflux permease AraJ, MFS family (AraJ) (PDB:4LDS)
Ruegeria pomeroyi DSS-3 1400 1.52843E-4 9.53063E-5 1.30882E-4 1.38437E-4 SPO1397 nan Multidrug efflux pump subunit AcrB (AcrB) (PDB:1IWG)
Ruegeria pomeroyi DSS-3 1401 0.001212388 0.001442829 0.001660644 9.79522E-4 SPO1398 K03585 Multidrug resistance, efflux pump MexAB-OprM Multidrug efflux pump subunit AcrA (membrane-fusion protein) (AcrA) (PDB:1T5E)
Ruegeria pomeroyi DSS-3 1402 SPO1399 nan Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH domain (GlxA)
Ruegeria pomeroyi DSS-3 1403 SPO1400 K18013 nan Uncharacterized conserved protein, DUF849 family (PDB:3C6C)
Ruegeria pomeroyi DSS-3 1404 1.06091E-5 1.28501E-5 2.08022E-5 1.20653E-5 SPO1401 nan Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (BioA) (PDB:1MLY)
Ruegeria pomeroyi DSS-3 1405 SPO1402 nan
Ruegeria pomeroyi DSS-3 1406 0.002521231 0.012212111 0.002885429 0.002443462 SPO1403 K01874 nan Methionyl-tRNA synthetase (MetG) (PDB:1A8H)
Ruegeria pomeroyi DSS-3 1407 5.38411E-6 8.74916E-6 SPO1404 nan Predicted arabinose efflux permease AraJ, MFS family (AraJ) (PDB:4LDS)
Ruegeria pomeroyi DSS-3 1408 7.04798E-4 4.2522E-4 3.83786E-4 2.95451E-4 SPO1405 K00505 Catecholamine biosynthesis, tyrosine => dopamine => noradrenaline => adrenaline Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases (PGRP) (PDB:4FET)
Ruegeria pomeroyi DSS-3 1409 SPO1406 nan Predicted metal-binding membrane protein
Ruegeria pomeroyi DSS-3 1410 SPO1407 nan
Ruegeria pomeroyi DSS-3 1411 1.04376E-4 1.16347E-4 4.33562E-5 7.60073E-5 SPO1408 K06180 nan Pseudouridine synthase RluA, 23S rRNA- or tRNA-specific (RluA) (PDB:2I82)
Ruegeria pomeroyi DSS-3 1412 0.001363733 0.001609499 0.001155487 6.29651E-4 SPO1409 K03089 nan DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) (RpoD) (PDB:1SIG)
Ruegeria pomeroyi DSS-3 1413 SPO1410 K01273 nan Zn-dependent dipeptidase, microsomal dipeptidase homolog (PDB:1ITQ) (PUBMED:14499931)
Ruegeria pomeroyi DSS-3 1414 SPO1411 K06204 nan RNA polymerase-binding transcription factor DksA (DksA) (PDB:1TJL)
Ruegeria pomeroyi DSS-3 1415 SPO1412 nan DNA-adenine methylase (Dam) (PDB:4GOL)
Ruegeria pomeroyi DSS-3 1416 1.68978E-4 7.58191E-5 1.40815E-4 9.60855E-5 SPO1412a nan
Ruegeria pomeroyi DSS-3 1417 0.002288245 0.007208269 0.002364067 0.002757977 SPO1413 K08602 nan Oligoendopeptidase F (PepF) (PDB:3CE2)
Ruegeria pomeroyi DSS-3 1418 1.73334E-4 1.0504E-4 3.89574E-4 2.31113E-4 SPO1414 K01048 nan Lysophospholipase, alpha-beta hydrolase superfamily (PldB) (PDB:5O7G)
Ruegeria pomeroyi DSS-3 1419 0.001238513 0.001578651 0.006113429 0.00174288 SPO1415 nan Putative sterol carrier protein, contains SCP2 domain (SCP2)
Ruegeria pomeroyi DSS-3 1420 SPO1416 nan Type IV pilus assembly protein PilF/PilW (PilF) (PDB:2VQ2) (PUBMED:16403447)
Ruegeria pomeroyi DSS-3 1421 8.91628E-4 0.009980042 0.002090583 0.001577482 SPO1417 K17675 nan Replicative superfamily II helicase (BRR2) (PDB:2VA8)
Ruegeria pomeroyi DSS-3 1422 SPO1418 K04762 nan Ribosomal 50S subunit-recycling heat shock protein, contains S4 domain (HslR) (PDB:3BBU)
Ruegeria pomeroyi DSS-3 1423 0.001775024 9.77545E-4 0.002736088 0.001949912 SPO1419 K05524 nan NAD-dependent dihydropyrimidine dehydrogenase, PreA subunit (PreA)
Ruegeria pomeroyi DSS-3 1424 1.83601E-4 0.001293991 2.52384E-4 2.37219E-4 SPO1420 K07736 nan RNA polymerase-interacting regulator, CarD/CdnL/TRCF family (CdnL) (PDB:4ILU)
Ruegeria pomeroyi DSS-3 1425 SPO1421 nan Ribosomal protein S27E (RPS27A) (PDB:1QXF)
Ruegeria pomeroyi DSS-3 1426 SPO1422 K02233 Cobalamin biosynthesis, cobyrinate a,c-diamide => cobalamin Cobalamin synthase CobS (adenosylcobinamide-GDP ribazoletransferase) (CobS) (PUBMED:31481610)
Ruegeria pomeroyi DSS-3 1427 1.0624E-4 7.80788E-5 1.14957E-4 5.72063E-5 SPO1423 K00768 Cobalamin biosynthesis, cobyrinate a,c-diamide => cobalamin NaMN:DMB phosphoribosyltransferase (CobT) (PDB:1D0S)
Ruegeria pomeroyi DSS-3 1428 1.49138E-5 5.6862E-5 1.25744E-5 1.63759E-5 SPO1424 K03455 nan Kef-type K+ transport system, membrane component KefB (KefB) (PDB:4BWZ)!!!Voltage-gated potassium channel Kch (Kch) (PDB:3FWZ)
Ruegeria pomeroyi DSS-3 1429 SPO1425 K03719 nan DNA-binding transcriptional regulator, Lrp family (Lrp) (PDB:1I1G)
Ruegeria pomeroyi DSS-3 1430 1.50049E-6 6.00196E-6 1.50049E-6 SPO1426 K00457 Tyrosine degradation, tyrosine => homogentisate 4-hydroxyphenylpyruvate dioxygenase and related hemolysins (HppD)
Ruegeria pomeroyi DSS-3 1431 4.40076E-4 0.001820079 6.6829E-4 4.46177E-4 SPO1427 nan
Ruegeria pomeroyi DSS-3 1432 0.001478286 0.003870617 0.007828166 0.00234269 SPO1429 K09807 nan Uncharacterized conserved protein YggE, contains kinase-interacting SIMPL domain (YggE) (PDB:4HVZ)
Ruegeria pomeroyi DSS-3 1433 SPO1430 K08217 nan MFS-type transporter involved in bile tolerance, Atg22 family (BtlA) (PUBMED:12583894)
Ruegeria pomeroyi DSS-3 1434 0.005494982 0.018514322 0.005812356 0.006163149 SPO1431 K01740 nan O-acetylhomoserine/O-acetylserine sulfhydrylase, pyridoxal phosphate-dependent (MET17) (PDB:2CTZ)
Ruegeria pomeroyi DSS-3 1435 6.65671E-5 9.76318E-5 1.33134E-4 SPO1432 nan Rhodanese-related sulfurtransferase (PspE) (PDB:1TQ1)
Ruegeria pomeroyi DSS-3 1436 3.1562E-4 6.14267E-4 2.93527E-4 4.96575E-4 SPO1433 K23107 nan Pyridoxal reductase PdxI or related oxidoreductase, aldo/keto reductase family (PdxI) (PDB:1LQA) (PUBMED:32253339)
Ruegeria pomeroyi DSS-3 1437 1.66924E-6 1.66924E-6 SPO1434 nan Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH domain (GlxA)
Ruegeria pomeroyi DSS-3 1438 9.12256E-6 1.34465E-5 2.06778E-5 3.04086E-5 SPO1435 K18013 nan Uncharacterized conserved protein, DUF849 family (PDB:3C6C)
Ruegeria pomeroyi DSS-3 1439 1.01491E-5 4.08456E-5 1.09009E-5 8.26964E-6 SPO1436 K17735 nan Acyl-CoA thioesterase FadM (FadM) (PDB:2FUJ)!!!3-hydroxyacyl-CoA dehydrogenase (FadB) (PDB:5ZQZ)
Ruegeria pomeroyi DSS-3 1440 SPO1437 nan NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family (FabG) (PDB:6L1H)
Ruegeria pomeroyi DSS-3 1441 9.87288E-5 3.99403E-5 0.001178575 5.24497E-5 SPO1438 nan
Ruegeria pomeroyi DSS-3 1442 7.76225E-6 SPO1439 nan Transcriptional regulator, contains XRE-family HTH domain (HipB) (PDB:1ADR)
Ruegeria pomeroyi DSS-3 1443 SPO1440 nan Uncharacterized membrane protein, DUF2061 family (PUBMED:15901686)
Ruegeria pomeroyi DSS-3 1444 SPO1441 K02294 nan Fatty acid desaturase (DesA)
Ruegeria pomeroyi DSS-3 1445 SPO1442 nan Permease of the drug/metabolite transporter (DMT) superfamily (RhaT) (PDB:5I20)
Ruegeria pomeroyi DSS-3 1446 0.001405012 0.006601708 0.002878039 0.001651035 SPO1443 K11927 nan Superfamily II DNA and RNA helicase (SrmB) (PDB:3RRM)
Ruegeria pomeroyi DSS-3 1447 2.13191E-5 3.30125E-5 1.70552E-6 1.53497E-5 SPO1444 nan
Ruegeria pomeroyi DSS-3 1448 2.28825E-6 1.46722E-5 3.66119E-5 5.72062E-6 SPO1445 K00059 Fatty acid biosynthesis, elongation NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family (FabG) (PDB:6L1H)
Ruegeria pomeroyi DSS-3 1449 1.0643E-5 2.90909E-5 1.91574E-5 SPO1446 K01475 nan Kynurenine formamidase (PDB:1R61)
Ruegeria pomeroyi DSS-3 1450 5.09679E-6 1.5255E-5 5.09679E-6 7.22046E-6 SPO1447 K07068 nan Short-chain dehydrogenase (YqjQ)!!!Uncharacterized OB-fold protein, contains Zn-ribbon domain (PDB:3IRB)
Ruegeria pomeroyi DSS-3 1451 5.60387E-6 1.26087E-5 6.53785E-6 SPO1448 K00626 Ethylmalonyl pathway Acetyl-CoA acetyltransferase (PaaJ) (PDB:1AFW)
Ruegeria pomeroyi DSS-3 1452 1.5255E-5 2.50082E-6 2.00065E-6 SPO1449 K02182 nan O-succinylbenzoic acid-CoA ligase MenE or related acyl-CoA synthetase (AMP-forming) (MenE/FadK) (PDB:5EY9) (PUBMED:25151136;27455459)
Ruegeria pomeroyi DSS-3 1453 1.39033E-5 3.12823E-5 SPO1450 nan 3-phenylpropionate/cinnamic acid dioxygenase, small subunit (HcaF)
Ruegeria pomeroyi DSS-3 1454 6.60013E-5 1.56618E-4 1.96343E-4 7.18124E-5 SPO1451 nan Phenylpropionate dioxygenase or related ring-hydroxylating dioxygenase, large terminal subunit (HcaE) (PDB:4QDC)
Ruegeria pomeroyi DSS-3 1455 SPO1452 K03863 nan Ferredoxin (Fdx) (PDB:1KRH)!!!Flavodoxin/ferredoxin--NADP reductase (Fpr) (PDB:3OZU)
Ruegeria pomeroyi DSS-3 1456 2.34847E-5 3.36238E-5 2.64955E-5 SPO1453 nan DNA-binding transcriptional regulator, MarR family (MarR) (PDB:1JGS)
Ruegeria pomeroyi DSS-3 1457 4.09951E-5 4.50993E-4 1.49026E-4 1.49541E-5 SPO1454 K21395 nan TRAP-type C4-dicarboxylate transport system, periplasmic component (DctP) (PDB:2CEX)
Ruegeria pomeroyi DSS-3 1458 SPO1455 K21394 nan TRAP-type C4-dicarboxylate transport system, small permease component YiaM (DctM)
Ruegeria pomeroyi DSS-3 1459 SPO1456 K11690 nan TRAP-type C4-dicarboxylate transport system, large permease component (DctQ)
Ruegeria pomeroyi DSS-3 1460 3.84041E-5 5.56393E-5 3.32836E-5 2.17623E-5 SPO1457 K01075 nan Acyl-CoA thioesterase FadM (FadM) (PDB:2FUJ)
Ruegeria pomeroyi DSS-3 1461 SPO1458 nan DNA-binding transcriptional regulator, MarR family (MarR) (PDB:1JGS)
Ruegeria pomeroyi DSS-3 1462 SPO1459 K00179 nan TPP-dependent indolepyruvate ferredoxin oxidoreductase, alpha subunit (IorA)
Ruegeria pomeroyi DSS-3 1463 SPO1460 K00180 nan Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, gamma subunit (PorG) (PDB:1B0P)
Ruegeria pomeroyi DSS-3 1464 2.05685E-6 3.90801E-5 2.05685E-6 SPO1461 K16841 nan Asp/Glu/hydantoin racemase (Dcg1)
Ruegeria pomeroyi DSS-3 1465 5.62412E-5 2.62166E-5 4.1023E-5 3.08775E-5 SPO1462 K03286 nan Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins (OmpA) (PDB:1OAP)
Ruegeria pomeroyi DSS-3 1466 SPO1463 K11690 nan TRAP-type mannitol/chloroaromatic compound transport system, large permease component (FcbT3)
Ruegeria pomeroyi DSS-3 1467 SPO1464 K21394 nan TRAP-type C4-dicarboxylate transport system, small permease component YiaM (DctM)
Ruegeria pomeroyi DSS-3 1468 1.00362E-4 1.46435E-4 1.5255E-4 3.63978E-5 SPO1465 K21395 nan TRAP-type C4-dicarboxylate transport system, periplasmic component (DctP) (PDB:2CEX)
Ruegeria pomeroyi DSS-3 1469 SPO1466 K04940 nan Glycerol-3-phosphate dehydrogenase (GpsA) (PDB:1EVY)
Ruegeria pomeroyi DSS-3 1470 SPO1467 nan 3-hydroxyacyl-CoA dehydrogenase (FadB) (PDB:5ZQZ)
Ruegeria pomeroyi DSS-3 1471 3.79267E-6 9.11925E-6 1.36536E-5 7.07965E-6 SPO1468 K00817 Histidine biosynthesis, PRPP => histidine Histidinol-phosphate/aromatic aminotransferase or cobyric acid decarboxylase (HisC) (PDB:4R2N)
Ruegeria pomeroyi DSS-3 1472 SPO1469 K00244 Citrate cycle (TCA cycle, Krebs cycle) Succinate dehydrogenase/fumarate reductase, flavoprotein subunit (SdhA) (PDB:1KF6)
Ruegeria pomeroyi DSS-3 1473 SPO1470 nan 2-Methylisocitrate lyase and related enzymes, PEP mutase family (PrpB) (PDB:1XG3)
Ruegeria pomeroyi DSS-3 1474 2.66592E-6 SPO1471 K09020 Pyrimidine degradation, uracil => 3-hydroxypropanoate Nicotinamidase-related amidase (PncA) (PDB:1ILW)
Ruegeria pomeroyi DSS-3 1475 SPO1472 K01473 nan N-methylhydantoinase A/oxoprolinase/acetone carboxylase, beta subunit (HyuA)
Ruegeria pomeroyi DSS-3 1476 SPO1473 K01474 nan N-methylhydantoinase B/oxoprolinase/acetone carboxylase, alpha subunit (HyuB) (PDB:5L9W)
Ruegeria pomeroyi DSS-3 1477 SPO1474 K01821 Catechol meta-cleavage, catechol => acetyl-CoA / 4-methylcatechol => propanoyl-CoA Phenylpyruvate tautomerase PptA, 4-oxalocrotonate tautomerase family (PptA) (PDB:1BJP)!!!Limonene-1,2-epoxide hydrolase LimA/EphG (LimA) (PDB:1NU3)
Ruegeria pomeroyi DSS-3 1478 SPO1475 K03710 nan DNA-binding transcriptional regulator, GntR family (MngR) (PDB:2WV0)
Ruegeria pomeroyi DSS-3 1479 1.215E-6 1.215E-6 SPO1476 K01703 Isoleucine biosynthesis, pyruvate => 2-oxobutanoate Homoaconitase/3-isopropylmalate dehydratase large subunit (LeuC) (PDB:4KP1)
Ruegeria pomeroyi DSS-3 1480 SPO1477 K01704 Isoleucine biosynthesis, pyruvate => 2-oxobutanoate 3-isopropylmalate dehydratase small subunit (LeuD) (PDB:3Q3W)
Ruegeria pomeroyi DSS-3 1481 SPO1478 K03088 nan DNA-directed RNA polymerase specialized sigma subunit, sigma24 family (RpoE) (PDB:2Q1Z)
Ruegeria pomeroyi DSS-3 1482 SPO1479 K07167 nan Anti-sigma factor ChrR, cupin superfamily (ChrR) (PDB:2Q1Z)
Ruegeria pomeroyi DSS-3 1483 SPO1480 K07124 nan Short-chain dehydrogenase (YqjQ)
Ruegeria pomeroyi DSS-3 1484 SPO1481 K09701 nan Uncharacterized conserved protein, DUF1365 family
Ruegeria pomeroyi DSS-3 1485 SPO1482 K06954 nan Predicted flavin-containing amine oxidase (Ppro0129)
Ruegeria pomeroyi DSS-3 1486 SPO1483 K00574 nan Cyclopropane fatty-acyl-phospholipid synthase and related methyltransferases (Cfa) (PDB:5Z9O)
Ruegeria pomeroyi DSS-3 1487 SPO1484 nan
Ruegeria pomeroyi DSS-3 1488 SPO1485 nan Na+/melibiose symporter or related transporter (MelB) (PDB:4M64)
Ruegeria pomeroyi DSS-3 1489 SPO1486 nan
Ruegeria pomeroyi DSS-3 1490 SPO1487 nan
Ruegeria pomeroyi DSS-3 1491 9.2299E-6 SPO1488 nan DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains (CitB) (PDB:1A04)
Ruegeria pomeroyi DSS-3 1492 SPO1489 K21801 nan Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase (GatA) (PDB:3H0L)
Ruegeria pomeroyi DSS-3 1493 SPO1490 K11959 nan ABC-type branched-chain amino acid transport system, periplasmic component (LivK) (PDB:1USG)
Ruegeria pomeroyi DSS-3 1494 SPO1491 K11960 nan Branched-chain amino acid ABC-type transport system, permease component (LivH)
Ruegeria pomeroyi DSS-3 1495 SPO1492 K11961 nan ABC-type branched-chain amino acid transport system, ATPase component LivG (LivG) (PDB:1G9X) (PUBMED:29514851)!!!ABC-type branched-chain amino acid transport system, permease component (LivM)
Ruegeria pomeroyi DSS-3 1496 SPO1493 K11963 nan ABC-type branched-chain amino acid transport system, ATPase component LivF (LivF) (PDB:1JI0) (PUBMED:26527648;32250026)
Ruegeria pomeroyi DSS-3 1497 1.20965E-6 4.83858E-6 1.20965E-6 SPO1494 K14584 Naphthalene degradation, naphthalene => salicylate 2-hydroxychromene-2-carboxylate isomerase (NahD)
Ruegeria pomeroyi DSS-3 1498 1.51901E-4 7.82754E-6 1.40995E-4 1.26195E-4 SPO1495 K02003 nan ABC-type lipoprotein export system, ATPase component (LolD) (PDB:5GKO)
Ruegeria pomeroyi DSS-3 1499 4.466E-5 1.55845E-5 2.55865E-5 SPO1496 K02004 nan ABC-type antimicrobial peptide transport system, permease component (SalY)!!!ABC-type transport system involved in lipoprotein release, permease component LolC (LolE) (PDB:6F49)
Ruegeria pomeroyi DSS-3 1500 0.001891763 8.56657E-4 0.001818275 9.40821E-4 SPO1497 K02005 nan Multidrug efflux pump subunit AcrA (membrane-fusion protein) (AcrA) (PDB:1T5E)
Ruegeria pomeroyi DSS-3 1501 0.001948382 0.007511547 0.002287516 0.00206872 SPO1498 K01676 Citrate cycle (TCA cycle, Krebs cycle) Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain (FumA) (PDB:5L2R)!!!Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain (TtdA) (PDB:5L2R) (PUBMED:15613473)
Ruegeria pomeroyi DSS-3 1502 5.63971E-5 1.61098E-4 6.22526E-5 1.84909E-5 SPO1499 nan 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase MenH and related esterases, alpha/beta hydrolase fold (MenH) (PDB:4MYS)
Ruegeria pomeroyi DSS-3 1503 1.46839E-6 4.35623E-5 SPO1500 K06139 nan Radical SAM superfamily maturase, SkfB/NifB/PqqE family (SkfB) (PDB:6Q2P) (PUBMED:23282011)
Ruegeria pomeroyi DSS-3 1504 2.31233E-5 2.4408E-5 8.67125E-5 SPO1501 K06138 nan Radical SAM superfamily maturase, SkfB/NifB/PqqE family (SkfB) (PDB:6Q2P) (PUBMED:23282011)
Ruegeria pomeroyi DSS-3 1505 1.48119E-5 1.47761E-5 3.646E-5 5.01325E-5 SPO1502 K06137 nan Pyrroloquinoline quinone (PQQ) biosynthesis protein C (PqqC) (PDB:1OTV)
Ruegeria pomeroyi DSS-3 1506 6.70184E-5 1.05492E-5 1.52032E-4 SPO1503 K06136 nan Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase (PhnP) (PDB:6B9V)
Ruegeria pomeroyi DSS-3 1507 SPO1504 nan
Ruegeria pomeroyi DSS-3 1508 4.4202E-5 1.86289E-6 4.22254E-6 SPO1505 K20975 nan Signal transduction histidine kinase (BaeS) (PDB:1JOY)
Ruegeria pomeroyi DSS-3 1509 5.64708E-6 SPO1506 nan FIST domain protein MJ1623, contains FIST_N and FIST_C domains (FIST) (PUBMED:17855421)
Ruegeria pomeroyi DSS-3 1510 3.47344E-4 8.19209E-5 5.47615E-5 5.39009E-4 SPO1507 nan DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains (CitB) (PDB:1A04)
Ruegeria pomeroyi DSS-3 1511 1.70826E-4 5.50219E-5 1.63122E-5 5.85428E-4 SPO1508 K00114 nan Glucose dehydrogenase, PQQ-dependent (Gcd) (PDB:1FLG)
Ruegeria pomeroyi DSS-3 1512 SPO1509 K08738 nan Cytochrome c2 (Cyc7) (PDB:1YEA)
Ruegeria pomeroyi DSS-3 1513 SPO1510 nan ABC-type multidrug transport system, permease component (YadH)
Ruegeria pomeroyi DSS-3 1514 9.03998E-6 SPO1511 nan ABC-type multidrug transport system, ATPase component (CcmA) (PDB:5DO7)
Ruegeria pomeroyi DSS-3 1515 SPO1512 nan
Ruegeria pomeroyi DSS-3 1516 6.90791E-6 3.74178E-5 SPO1513 nan DNA-binding beta-propeller fold protein YncE (YncE) (PDB:3VGZ) (PUBMED:22120742;28628661)
Ruegeria pomeroyi DSS-3 1517 3.4935E-5 1.15984E-4 SPO1514 nan ABC-type branched-chain amino acid transport system, periplasmic component (LivK) (PDB:1USG)
Ruegeria pomeroyi DSS-3 1518 6.12923E-5 3.4578E-5 7.68197E-5 4.20874E-4 SPO1515 nan Cytochrome c, mono- and diheme variants (CccA) (PDB:1A2S)
Ruegeria pomeroyi DSS-3 1519 1.80651E-5 SPO1516 nan ABC-type amino acid transport/signal transduction system, periplasmic component/domain (HisJ) (PDB:1GGG)
Ruegeria pomeroyi DSS-3 1520 4.18196E-4 1.87093E-4 2.66173E-4 0.001065744 SPO1517 K09386 nan Carbon monoxide dehydrogenase subunit CoxG (CoxG) (PDB:2NS9)
Ruegeria pomeroyi DSS-3 1521 3.44516E-4 3.46793E-4 5.19616E-4 3.64982E-4 SPO1518 K03518 nan Aldehyde, CO, or xanthine dehydrogenase, Fe-S subunit, CoxS/CutS family (CutS) (PDB:1FFU) (PUBMED:21175741)
Ruegeria pomeroyi DSS-3 1522 0.001941989 0.031099256 0.003485102 0.003871433 SPO1519 K03520 nan Aldehyde, CO or xanthine dehydrogenase, Mo-binding subunit (CoxL) (PDB:1DGJ) (PUBMED:10095793)
Ruegeria pomeroyi DSS-3 1523 7.64626E-4 0.007180604 0.003387307 0.00135605 SPO1520 K03519 nan Aldehyde, CO, or xanthine dehydrogenase, FAD-binding subunit (CutB) (PDB:5Y6Q)
Ruegeria pomeroyi DSS-3 1524 SPO1521 K19339 nan Polyferredoxin NapH (NapH) (PUBMED:27322068)!!!Transcriptional regulator NosR of nitric oxide reductase (NosR)
Ruegeria pomeroyi DSS-3 1525 1.12652E-5 6.10199E-6 2.8163E-6 SPO1522 nan Rhodanese-related sulfurtransferase (PspE) (PDB:1TQ1)
Ruegeria pomeroyi DSS-3 1526 SPO1523 K05555 Type II polyketide backbone biosynthesis, acyl-CoA + malonyl-CoA => polyketide Glyoxylase or a related metal-dependent hydrolase, beta-lactamase superfamily II (GloB) (PDB:1QH3) (PUBMED:25670698)
Ruegeria pomeroyi DSS-3 1527 SPO1524 K17226 Thiosulfate oxidation by SOX complex, thiosulfate => sulfate Sulfur oxidation protein SoxY (SoxY) (PDB:2NNC) (PUBMED:17327392)
Ruegeria pomeroyi DSS-3 1528 SPO1525 nan Multidrug efflux pump subunit AcrB (AcrB) (PDB:1IWG)
Ruegeria pomeroyi DSS-3 1529 SPO1526 nan Multidrug efflux pump subunit AcrA (membrane-fusion protein) (AcrA) (PDB:1T5E)
Ruegeria pomeroyi DSS-3 1530 SPO1527 nan
Ruegeria pomeroyi DSS-3 1531 SPO1528 nan
Ruegeria pomeroyi DSS-3 1532 SPO1529 nan Magnesium uptake protein YhiD/SapB, involved in acid resistance (SapB) (PUBMED:19798051)
Ruegeria pomeroyi DSS-3 1533 SPO1530 nan Lipid II flippase MurJ/MviN (peptidoglycan biosynthesis) (MurJ) (PDB:5T77) (PUBMED:25013077)
Ruegeria pomeroyi DSS-3 1534 SPO1531 nan Acetyltransferase involved in cellulose biosynthesis, CelD/BcsL family (BcsL)
Ruegeria pomeroyi DSS-3 1535 9.34773E-6 9.34773E-6 4.67386E-6 SPO1532 nan
Ruegeria pomeroyi DSS-3 1536 5.78083E-6 1.18756E-5 5.78083E-6 1.44521E-6 SPO1533 nan Glycosyltransferase involved in cell wall bisynthesis (RfaB) (PDB:2IV7)
Ruegeria pomeroyi DSS-3 1537 SPO1534 nan Sugar transferase involved in LPS biosynthesis (colanic, teichoic acid) (WcaJ) (PDB:5W7L)
Ruegeria pomeroyi DSS-3 1538 SPO1535 nan Peptidoglycan/xylan/chitin deacetylase, PgdA/NodB/CDA1 family (CDA1) (PDB:1NY1)
Ruegeria pomeroyi DSS-3 1539 SPO1536 K16703 nan Glycosyltransferase involved in cell wall bisynthesis (RfaB) (PDB:2IV7)
Ruegeria pomeroyi DSS-3 1540 SPO1537 nan Type IV pilus assembly protein PilF/PilW (PilF) (PDB:2VQ2) (PUBMED:16403447)
Ruegeria pomeroyi DSS-3 1541 SPO1538 nan Exopolysaccharide export protein/domain GumC/Wzc1 (GumC) (PUBMED:15003255;23089617)
Ruegeria pomeroyi DSS-3 1542 SPO1539 nan O-antigen ligase (RfaL)
Ruegeria pomeroyi DSS-3 1543 SPO1540 nan Glycosyltransferase, catalytic subunit of cellulose synthase and poly-beta-1,6-N-acetylglucosamine synthase (BcsA) (PDB:4HG6)
Ruegeria pomeroyi DSS-3 1544 7.24989E-6 4.12706E-6 5.43742E-6 SPO1541 nan DNA-binding transcriptional regulator, LysR family (LysR) (PDB:2FYI)
Ruegeria pomeroyi DSS-3 1545 3.90042E-6 6.24067E-6 SPO1542 K01273 nan Zn-dependent dipeptidase, microsomal dipeptidase homolog (PDB:1ITQ) (PUBMED:14499931)
Ruegeria pomeroyi DSS-3 1546 0.001372433 0.006796993 0.001898815 9.74261E-4 SPO1543 K02035 nan ABC-type transport system, periplasmic component (DdpA) (PDB:3RQT)
Ruegeria pomeroyi DSS-3 1547 SPO1544 K02033 nan ABC-type dipeptide/oligopeptide/nickel transport system, permease component (DppB)
Ruegeria pomeroyi DSS-3 1548 SPO1545 K02034 nan ABC-type dipeptide/oligopeptide/nickel transport system, permease component (DppC)
Ruegeria pomeroyi DSS-3 1549 1.93373E-6 6.10199E-6 1.93373E-6 SPO1546 K02031 nan ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component (DppD) (PDB:4FWI)
Ruegeria pomeroyi DSS-3 1550 1.08106E-5 SPO1547 nan ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component (DppF)
Ruegeria pomeroyi DSS-3 1551 SPO1548 K02002 nan ABC-type proline/glycine betaine transport system, periplasmic component (ProX) (PDB:1R9L)
Ruegeria pomeroyi DSS-3 1552 SPO1549 K02000 nan ABC-type proline/glycine betaine transport system, ATPase component (ProV)
Ruegeria pomeroyi DSS-3 1553 0.0 SPO1550 K02001 nan ABC-type proline/glycine betaine transport system, permease component (ProW)
Ruegeria pomeroyi DSS-3 1554 SPO1551 K18277 nan Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD (CzcO) (PDB:4USQ)
Ruegeria pomeroyi DSS-3 1555 8.03978E-6 4.47936E-6 7.00904E-6 2.2264E-5 SPO1552 K01999 nan ABC-type branched-chain amino acid transport system, periplasmic component (LivK) (PDB:1USG)
Ruegeria pomeroyi DSS-3 1556 5.57222E-4 9.5813E-4 7.04665E-4 7.17686E-4 SPO1553 K05799 nan DNA-binding transcriptional regulator, FadR family (FadR) (PDB:1E2X)
Ruegeria pomeroyi DSS-3 1557 SPO1554 K03320 nan Ammonia channel protein AmtB (AmtB) (PDB:1U77)
Ruegeria pomeroyi DSS-3 1558 SPO1555 K22515 nan NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit (chain F) (NuoF) (PDB:2FUG)!!!NADH:ubiquinone oxidoreductase 24 kD subunit (chain E) (NuoE) (PDB:5XF9)
Ruegeria pomeroyi DSS-3 1559 SPO1556 K00123 nan Predicted molibdopterin-dependent oxidoreductase YjgC (YjgC) (PDB:1AA6)
Ruegeria pomeroyi DSS-3 1560 SPO1557 K01938 Reductive acetyl-CoA pathway (Wood-Ljungdahl pathway) Formyltetrahydrofolate synthetase (MIS1) (PDB:1EG7)
Ruegeria pomeroyi DSS-3 1561 SPO1558 K04782 nan Chorismate mutase (PheA) (PDB:1ECM)
Ruegeria pomeroyi DSS-3 1562 2.83866E-4 6.93786E-4 2.70878E-4 3.6179E-4 SPO1559 K01491 Reductive acetyl-CoA pathway (Wood-Ljungdahl pathway) 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase (FolD) (PDB:1A4I)
Ruegeria pomeroyi DSS-3 1563 SPO1560 K01491 Reductive acetyl-CoA pathway (Wood-Ljungdahl pathway) 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase (FolD) (PDB:1A4I)
Ruegeria pomeroyi DSS-3 1564 SPO1561 nan Permease of the drug/metabolite transporter (DMT) superfamily (RhaT) (PDB:5I20)
Ruegeria pomeroyi DSS-3 1565 6.2644E-6 3.46481E-4 3.27141E-5 3.85145E-5 SPO1562 K00605 Photorespiration Glycine cleavage system protein T (aminomethyltransferase) (GcvT) (PDB:2GAH) (PUBMED:25433025;25505271)!!!Uncharacterized conserved protein YcgI, DUF1989 family (YcgI) (PDB:3DI4)
Ruegeria pomeroyi DSS-3 1566 SPO1563 K06886 nan Truncated hemoglobin YjbI (YjbI) (PDB:1DLW)
Ruegeria pomeroyi DSS-3 1567 1.29523E-6 SPO1564 K11529 Formaldehyde assimilation, serine pathway Glycerate-2-kinase (GckA) (PDB:1X3L) (PUBMED:18156253)
Ruegeria pomeroyi DSS-3 1568 1.68978E-6 1.04102E-4 0.001165949 1.23917E-5 SPO1565 K08691 Ethylmalonyl pathway Citrate lyase beta subunit (CitE) (PDB:4ROQ)
Ruegeria pomeroyi DSS-3 1569 3.90348E-5 9.98507E-6 2.96126E-5 2.60232E-5 SPO1566 K07685 nan DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains (CitB) (PDB:1A04)
Ruegeria pomeroyi DSS-3 1570 SPO1567 nan Archaeal aspartate aminotransferase or a related aminotransferase, includes purine catabolism protein PucG (PucG) (PDB:3NNK)
Ruegeria pomeroyi DSS-3 1571 1.37639E-6 SPO1568 K14067 Formaldehyde assimilation, serine pathway Succinyl-CoA synthetase, beta subunit (SucC) (PDB:1SCU)
Ruegeria pomeroyi DSS-3 1572 SPO1569 K08692 Citrate cycle (TCA cycle, Krebs cycle) Succinyl-CoA synthetase, alpha subunit (SucD) (PDB:1CQI)
Ruegeria pomeroyi DSS-3 1573 SPO1570 nan Lactate dehydrogenase or related 2-hydroxyacid dehydrogenase (LdhA) (PDB:1DXY)
Ruegeria pomeroyi DSS-3 1574 SPO1571 K01595 CAM (Crassulacean acid metabolism), dark Phosphoenolpyruvate carboxylase (Ppc) (PDB:1FIY)
Ruegeria pomeroyi DSS-3 1575 SPO1572 K00600 Photorespiration Glycine/serine hydroxymethyltransferase (GlyA) (PDB:1BJ4)
Ruegeria pomeroyi DSS-3 1576 1.98798E-5 6.16073E-5 1.55311E-5 1.98798E-5 SPO1573 K01949 nan Glutamine synthetase (GlnA) (PDB:1F1H)
Ruegeria pomeroyi DSS-3 1577 1.46722E-5 1.5255E-5 7.93259E-6 SPO1574 K22083 nan Glutamate synthase domain 2 (GltB2) (PDB:1EA0)
Ruegeria pomeroyi DSS-3 1578 SPO1575 K22082 nan Glutamate synthase domain 3 (GltB3) (PDB:1EA0)
Ruegeria pomeroyi DSS-3 1579 1.77728E-6 7.10911E-6 SPO1576 K22081 nan Glutamate synthase domain 1 (GltB1) (PDB:1EA0)
Ruegeria pomeroyi DSS-3 1580 SPO1577 nan
Ruegeria pomeroyi DSS-3 1581 SPO1578 K03320 nan Ammonia channel protein AmtB (AmtB) (PDB:1U77)
Ruegeria pomeroyi DSS-3 1582 9.36918E-6 7.84513E-5 1.29727E-5 1.44141E-6 SPO1579 K00605 Photorespiration Glycine cleavage system protein T (aminomethyltransferase) (GcvT) (PDB:2GAH) (PUBMED:25433025;25505271)
Ruegeria pomeroyi DSS-3 1583 2.5783E-6 SPO1580 K22344 nan
Ruegeria pomeroyi DSS-3 1584 1.50689E-5 SPO1581 K22343 nan Ferredoxin (Fdx) (PDB:1KRH)!!!Flavodoxin/ferredoxin--NADP reductase (Fpr) (PDB:3OZU)
Ruegeria pomeroyi DSS-3 1585 1.54698E-6 SPO1582 K22342 nan
Ruegeria pomeroyi DSS-3 1586 8.22503E-5 7.98985E-5 1.5269E-4 8.52028E-5 SPO1583 K23779 nan Transcriptional regulator, contains XRE-family HTH domain (HipB) (PDB:1ADR)!!!Uncharacterized conserved protein, cupin superfamily
Ruegeria pomeroyi DSS-3 1587 SPO1584 nan Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH domain (GlxA)
Ruegeria pomeroyi DSS-3 1588 SPO1585 K00305 nan Sarcosine oxidase gamma subunit (SoxG)
Ruegeria pomeroyi DSS-3 1589 SPO1586 K22086 nan Glycine cleavage system protein T (aminomethyltransferase) (GcvT) (PDB:2GAH) (PUBMED:25433025;25505271)!!!NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase, or a related oxidoreductase (FadH2) (PDB:1VRQ)
Ruegeria pomeroyi DSS-3 1590 SPO1587 K22085 nan Sarcosine oxidase delta subunit (SoxD) (PDB:2GAH)
Ruegeria pomeroyi DSS-3 1591 SPO1588 K22084 nan Glycine/D-amino acid oxidase (deaminating) (DadA) (PDB:3AWI)
Ruegeria pomeroyi DSS-3 1592 3.89182E-5 9.98507E-6 1.08106E-5 SPO1589 K01607 nan Uncharacterized conserved protein YurZ, alkylhydroperoxidase/carboxymuconolactone decarboxylase family (YurZ) (PDB:3BEY)
Ruegeria pomeroyi DSS-3 1593 SPO1590 K22443 nan Phenylpropionate dioxygenase or related ring-hydroxylating dioxygenase, large terminal subunit (HcaE) (PDB:4QDC)
Ruegeria pomeroyi DSS-3 1594 SPO1591 nan DNA-binding transcriptional regulator, MurR/RpiR family, contains HTH and SIS domains (RpiR) (PDB:2O3F)
Ruegeria pomeroyi DSS-3 1595 6.71368E-7 SPO1592 K00315 nan Glycine cleavage system protein T (aminomethyltransferase) (GcvT) (PDB:2GAH) (PUBMED:25433025;25505271)!!!Glycine/D-amino acid oxidase (deaminating) (DadA) (PDB:3AWI)
Ruegeria pomeroyi DSS-3 1596 6.10199E-6 6.20541E-6 SPO1593 K00344 nan NADPH:quinone reductase or related Zn-dependent oxidoreductase (Qor) (PDB:2VCY)
Ruegeria pomeroyi DSS-3 1597 5.96934E-6 SPO1594 K21624 nan L-alanine-DL-glutamate epimerase or related enzyme of enolase superfamily (RspA) (PDB:1BKH)
Ruegeria pomeroyi DSS-3 1598 1.4964E-6 SPO1595 K21624 nan L-alanine-DL-glutamate epimerase or related enzyme of enolase superfamily (RspA) (PDB:1BKH)
Ruegeria pomeroyi DSS-3 1599 2.45901E-5 2.00364E-5 SPO1596 nan Cupin domain protein related to quercetin dioxygenase (QdoI) (PDB:2H0V)
Ruegeria pomeroyi DSS-3 1600 1.06209E-4 1.8306E-5 5.31045E-5 9.36885E-5 SPO1597 K01845 Siroheme biosynthesis, glutamyl-tRNA => siroheme Glutamate-1-semialdehyde aminotransferase (HemL) (PDB:2CFB)
Ruegeria pomeroyi DSS-3 1601 2.93425E-4 5.37094E-6 2.45181E-4 2.57738E-4 SPO1598 K09709 3-Hydroxypropionate bi-cycle Hydroxyacyl-ACP dehydratase HTD2, hotdog domain (HTD2) (PUBMED:10781606)
Ruegeria pomeroyi DSS-3 1602 SPO1599 K17724 nan 2-methylcitrate dehydratase PrpD (PrpD) (PDB:1SZQ)
Ruegeria pomeroyi DSS-3 1603 SPO1600 nan 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) (YcgM) (PDB:1GTT)
Ruegeria pomeroyi DSS-3 1604 SPO1601 K00077 Pantothenate biosynthesis, valine/L-aspartate => pantothenate Ketopantoate reductase (PanE) (PDB:1BG6)
Ruegeria pomeroyi DSS-3 1605 SPO1602 K14083 Methanogenesis, methylamine/dimethylamine/trimethylamine => methane Trimethylamine:corrinoid methyltransferase (MttB2)
Ruegeria pomeroyi DSS-3 1606 SPO1603 nan Malate/lactate/ureidoglycolate dehydrogenase, LDH2 family (AllD) (PDB:1NXU)
Ruegeria pomeroyi DSS-3 1607 SPO1604 K03566 nan DNA-binding transcriptional regulator, LysR family (LysR) (PDB:2FYI)
Ruegeria pomeroyi DSS-3 1608 6.3744E-6 1.30671E-5 2.64783E-5 1.17681E-5 SPO1605 nan Predicted amidohydrolase YtcJ (YtcJ) (PDB:3ICJ)
Ruegeria pomeroyi DSS-3 1609 4.99769E-4 0.001666231 0.001133998 4.17959E-4 SPO1606 K11069 nan Spermidine/putrescine-binding periplasmic protein (PotD) (PDB:1POT)
Ruegeria pomeroyi DSS-3 1610 SPO1607 K11070 nan ABC-type spermidine/putrescine transport system, permease component II (PotC)
Ruegeria pomeroyi DSS-3 1611 SPO1608 K11071 nan ABC-type spermidine/putrescine transport system, permease component I (PotB)
Ruegeria pomeroyi DSS-3 1612 1.50049E-6 6.00196E-6 6.00196E-6 SPO1609 K11072 nan ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component (PotA) (PDB:1Z47)
Ruegeria pomeroyi DSS-3 1613 SPO1610 nan DNA-binding transcriptional regulator, CsgD family (CsgD)
Ruegeria pomeroyi DSS-3 1614 SPO1611 nan
Ruegeria pomeroyi DSS-3 1615 SPO1612 K17218 nan NADH dehydrogenase, FAD-containing subunit (Ndh) (PDB:5NA4)
Ruegeria pomeroyi DSS-3 1616 SPO1613 nan
Ruegeria pomeroyi DSS-3 1617 SPO1614 nan Predicted peroxiredoxin, DsrE/DsrF-like family (PDB:3MC3)
Ruegeria pomeroyi DSS-3 1618 9.80677E-6 9.80677E-6 2.45169E-6 SPO1615 K10914 nan cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases (Crp) (PDB:1FT9)
Ruegeria pomeroyi DSS-3 1619 SPO1616 nan DNA-binding response regulator, LytR/AlgR family (LytT) (PDB:3BS1)
Ruegeria pomeroyi DSS-3 1620 SPO1617 K01406 nan Ca2+-binding protein, RTX toxin-related (PDB:1AF0) (PUBMED:15135544)
Ruegeria pomeroyi DSS-3 1621 SPO1618 nan
Ruegeria pomeroyi DSS-3 1622 SPO1619 nan
Ruegeria pomeroyi DSS-3 1623 5.49179E-5 2.8163E-6 2.8163E-6 SPO1620 nan Catechol-2,3-dioxygenase (CatE)
Ruegeria pomeroyi DSS-3 1624 SPO1621 K07343 nan
Ruegeria pomeroyi DSS-3 1625 1.0345E-4 4.16828E-6 2.57561E-4 5.3215E-5 SPO1622 nan Cytochrome P450 (CypX) (PDB:3A4Z)
Ruegeria pomeroyi DSS-3 1626 1.50542E-5 8.96737E-6 4.81736E-6 1.08391E-5 SPO1623 K02484 nan Signal transduction histidine kinase (BaeS) (PDB:1JOY)
Ruegeria pomeroyi DSS-3 1627 1.37295E-4 8.05941E-5 1.377E-4 6.56099E-5 SPO1624 K02483 nan DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain (OmpR) (PDB:1XHF)
Ruegeria pomeroyi DSS-3 1628 3.60017E-4 SPO1625 K04771 nan Periplasmic serine protease, S1-C subfamily, contain C-terminal PDZ domain (DegQ) (PDB:2HGA) (PUBMED:29686141)!!!Predicted metalloprotease, contains C-terminal PDZ domain (PDB:4FGM)
Ruegeria pomeroyi DSS-3 1629 1.72834E-6 9.98507E-6 1.72834E-6 3.16862E-6 SPO1626 K01406 nan Ca2+-binding protein, RTX toxin-related (PDB:1AF0) (PUBMED:15135544)
Ruegeria pomeroyi DSS-3 1630 1.38682E-5 3.12278E-5 5.54726E-5 3.46704E-5 SPO1627 K07141 nan CTP:molybdopterin cytidylyltransferase MocA (MocA) (PDB:2WAW)
Ruegeria pomeroyi DSS-3 1631 9.92903E-6 3.33157E-6 6.16286E-6 1.75755E-5 SPO1628 K00315 nan Glycine cleavage system protein T (aminomethyltransferase) (GcvT) (PDB:2GAH) (PUBMED:25433025;25505271)!!!Glycine/D-amino acid oxidase (deaminating) (DadA) (PDB:3AWI)
Ruegeria pomeroyi DSS-3 1632 2.11223E-5 1.65305E-5 1.27614E-5 1.27614E-5 SPO1629 nan Uncharacterized membrane protein
Ruegeria pomeroyi DSS-3 1633 1.5255E-5 SPO1630 nan
Ruegeria pomeroyi DSS-3 1634 1.54023E-4 3.85898E-4 1.43923E-4 5.63908E-5 SPO1631 K03699 nan Mg2+ and Co2+ transporter CorB, contains DUF21, CBS pair, and CorC-HlyC domains (CorB) (PUBMED:1779764)
Ruegeria pomeroyi DSS-3 1635 6.36979E-5 5.80112E-5 1.11328E-4 4.30391E-5 SPO1632 K04763 nan Site-specific recombinase XerD (XerD) (PDB:1A0P)
Ruegeria pomeroyi DSS-3 1636 1.86368E-4 6.50889E-4 5.42195E-4 1.97763E-4 SPO1633 nan
Ruegeria pomeroyi DSS-3 1637 2.8163E-6 2.8163E-6 SPO1634 K00891 Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate Shikimate kinase (AroK) (PDB:1E6C)
Ruegeria pomeroyi DSS-3 1638 3.8591E-4 2.35585E-4 2.47872E-4 4.50228E-4 SPO1635 K01735 Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate 3-dehydroquinate synthetase (AroB) (PDB:3ZOK)
Ruegeria pomeroyi DSS-3 1639 1.68148E-4 3.87434E-5 2.2214E-4 7.09613E-5 SPO1636 K06402 nan Zn-dependent protease (includes sporulation protein SpoIVFB) (SpoIVFB) (PDB:3B4R)
Ruegeria pomeroyi DSS-3 1640 0.001167005 0.001172074 0.001345488 0.001143106 SPO1637 K03111 nan Single-stranded DNA-binding protein (Ssb) (PDB:1EQQ)
Ruegeria pomeroyi DSS-3 1641 4.9712E-6 SPO1638 K08309 nan Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain) (MltE) (PDB:153L)
Ruegeria pomeroyi DSS-3 1642 SPO1639 nan NADP-dependent 3-hydroxy acid dehydrogenase YdfG (YdfG) (PDB:3P19)
Ruegeria pomeroyi DSS-3 1643 1.34274E-6 1.77728E-6 1.59955E-5 SPO1640 K03566 nan DNA-binding transcriptional regulator, LysR family (LysR) (PDB:2FYI)
Ruegeria pomeroyi DSS-3 1644 3.44962E-6 2.4408E-5 1.01189E-5 1.24186E-5 SPO1641 nan CubicO group peptidase, beta-lactamase class C family (AmpC) (PDB:1BLS)
Ruegeria pomeroyi DSS-3 1645 SPO1642 nan
Ruegeria pomeroyi DSS-3 1646 1.17849E-5 4.11434E-4 3.45692E-5 5.49966E-6 SPO1643 K17285 nan Uncharacterized secreted protein, contains LVIVD repeats, choice-of-anchor domain
Ruegeria pomeroyi DSS-3 1647 SPO1644 K02032 nan ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain (GsiA)
Ruegeria pomeroyi DSS-3 1648 SPO1645 K02034 nan ABC-type dipeptide/oligopeptide/nickel transport system, permease component (DppC)
Ruegeria pomeroyi DSS-3 1649 SPO1646 K02033 nan ABC-type dipeptide/oligopeptide/nickel transport system, permease component (DppB)
Ruegeria pomeroyi DSS-3 1650 1.18024E-5 8.954E-6 9.94889E-7 SPO1647 K02035 nan ABC-type transport system, periplasmic component (DdpA) (PDB:3RQT)
Ruegeria pomeroyi DSS-3 1651 SPO1648 nan Glycine cleavage system protein T (aminomethyltransferase) (GcvT) (PDB:2GAH) (PUBMED:25433025;25505271)
Ruegeria pomeroyi DSS-3 1652 SPO1649 nan Dehydrogenase (flavoprotein) (FixC) (PDB:4OPU)
Ruegeria pomeroyi DSS-3 1653 SPO1650 nan
Ruegeria pomeroyi DSS-3 1654 SPO1651 nan Dehydrogenase (flavoprotein) (FixC) (PDB:4OPU)
Ruegeria pomeroyi DSS-3 1655 SPO1652 nan Transposase InsO and inactivated derivatives (Tra5)!!!Transposase InsE and inactivated derivatives (InsE) (PDB:2JN6) (PUBMED:23818957)
Ruegeria pomeroyi DSS-3 1656 SPO1655 nan
Ruegeria pomeroyi DSS-3 1657 4.55067E-4 SPO1656 K02031 nan ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain (GsiA)
Ruegeria pomeroyi DSS-3 1658 1.23565E-5 5.51922E-6 8.92415E-6 2.19672E-5 SPO1657 nan ABC-type antimicrobial peptide export system, permease component SapC (SapC)
Ruegeria pomeroyi DSS-3 1659 1.42029E-5 5.15511E-5 1.42029E-5 SPO1658 K02033 nan ABC-type dipeptide/oligopeptide/nickel transport system, permease component (DppB)
Ruegeria pomeroyi DSS-3 1660 1.64844E-4 0.002966817 5.82298E-4 4.59455E-4 SPO1659 K02035 nan ABC-type transport system, periplasmic component (DdpA) (PDB:3RQT)
Ruegeria pomeroyi DSS-3 1661 SPO1660 K18954 nan AraC-type DNA-binding domain and AraC-containing proteins (AraC) (PDB:1BL0)
Ruegeria pomeroyi DSS-3 1662 4.24623E-5 7.29099E-6 6.35362E-5 3.5857E-5 SPO1661 K00791 nan tRNA A37 N6-isopentenylltransferase MiaA (MiaA) (PDB:2ZM5)
Ruegeria pomeroyi DSS-3 1663 0.002184682 0.002535838 0.001231823 0.002203279 SPO1662 K09903 Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP Uridylate kinase (PyrH) (PDB:2BND)
Ruegeria pomeroyi DSS-3 1664 SPO1663 nan
Ruegeria pomeroyi DSS-3 1665 0.001135068 6.6827E-4 0.003013142 0.001799271 SPO1664 K02838 nan Ribosome recycling factor (Frr) (PDB:1DD5)
Ruegeria pomeroyi DSS-3 1666 2.28259E-4 6.23656E-5 9.11532E-5 2.06413E-4 SPO1665 K00806 nan Undecaprenyl pyrophosphate synthase (UppS) (PDB:1X07)
Ruegeria pomeroyi DSS-3 1667 5.28057E-6 SPO1666 K00981 Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE CDP-diglyceride synthetase (CdsA) (PDB:4Q2E)
Ruegeria pomeroyi DSS-3 1668 3.47582E-5 3.94533E-5 7.87851E-6 2.31721E-5 SPO1667 K00099 C5 isoprenoid biosynthesis, non-mevalonate pathway 1-deoxy-D-xylulose 5-phosphate reductoisomerase (Dxr) (PDB:1JVS)
Ruegeria pomeroyi DSS-3 1669 2.55922E-4 0.001996373 2.9988E-4 5.49179E-4 SPO1668 K11749 nan Membrane-associated protease RseP, regulator of RpoE activity (RseP)
Ruegeria pomeroyi DSS-3 1670 SPO1669 nan
Ruegeria pomeroyi DSS-3 1671 0.004807932 0.041134223 0.004383429 0.004698143 SPO1670 K07277 nan Outer membrane protein assembly factor BamA (BamA) (PDB:5EKQ)
Ruegeria pomeroyi DSS-3 1672 3.61302E-5 2.95854E-5 2.89042E-6 2.89042E-6 SPO1671 K06142 nan Periplasmic chaperone for outer membrane proteins, Skp family (HlpA) (PDB:1SG2)
Ruegeria pomeroyi DSS-3 1673 7.87038E-5 1.44343E-4 1.39918E-5 5.59673E-5 SPO1672 K02372 Fatty acid biosynthesis, elongation 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratase (FabA) (PDB:1MKA)
Ruegeria pomeroyi DSS-3 1674 0.00323721 0.002392087 0.002445003 0.002578967 SPO1673 K00677 KDO2-lipid A biosynthesis, Raetz pathway, LpxL-LpxM type Acyl-[acyl carrier protein]--UDP-N-acetylglucosamine O-acyltransferase (LpxA) (PDB:1J2Z)
Ruegeria pomeroyi DSS-3 1675 8.74734E-4 2.42812E-4 0.00152619 0.001071315 SPO1674 K09949 KDO2-lipid A biosynthesis, Raetz pathway, LpxL-LpxM type Uncharacterized conserved protein, DUF1009 family (PDB:4GGM)
Ruegeria pomeroyi DSS-3 1676 1.54071E-4 7.41206E-5 2.21863E-4 1.77582E-4 SPO1675 K00748 KDO2-lipid A biosynthesis, Raetz pathway, LpxL-LpxM type Lipid A disaccharide synthetase (LpxB) (PDB:5W8N)
Ruegeria pomeroyi DSS-3 1677 2.90742E-5 2.4408E-5 2.36901E-5 3.23046E-6 SPO1676 K03790 nan Protein N-acetyltransferase, RimJ/RimL family (RimL) (PDB:1S7F)
Ruegeria pomeroyi DSS-3 1678 1.47913E-4 8.4004E-4 7.90818E-5 1.82571E-4 SPO1677 K00566 nan tRNA U34 2-thiouridine synthase MnmA/TrmU, contains the PP-loop ATPase domain (MnmA) (PDB:2HMA) (PUBMED:25825430)
Ruegeria pomeroyi DSS-3 1679 SPO1678 nan
Ruegeria pomeroyi DSS-3 1680 5.21489E-4 2.08563E-4 8.46073E-5 2.70743E-4 SPO1679 K13584 nan DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain (OmpR) (PDB:1XHF)
Ruegeria pomeroyi DSS-3 1681 5.8262E-4 0.001579647 4.09717E-4 8.47673E-4 SPO1680 K01972 nan NAD-dependent DNA ligase (Lig) (PDB:5TT5)
Ruegeria pomeroyi DSS-3 1682 1.5781E-5 5.30823E-5 3.57703E-5 2.26195E-5 SPO1681 K03655 nan RecG-like helicase (RecG) (PDB:1GM5)
Ruegeria pomeroyi DSS-3 1683 SPO1682 nan
Ruegeria pomeroyi DSS-3 1684 4.57649E-5 6.30783E-5 7.20034E-5 6.95627E-5 SPO1683 nan Fe-S cluster assembly scaffold protein IscU, NifU family (IscU) (PDB:1Q48)
Ruegeria pomeroyi DSS-3 1685 4.15345E-5 2.50767E-6 1.84598E-5 1.15374E-5 SPO1684 K01496 Histidine biosynthesis, PRPP => histidine Phosphoribosyl-AMP cyclohydrolase (HisI1) (PDB:1ZPS)
Ruegeria pomeroyi DSS-3 1686 1.77154E-5 7.10911E-6 1.27945E-5 1.77154E-5 SPO1685 nan Glutamyl- or glutaminyl-tRNA synthetase (GlnS) (PDB:1EUQ)
Ruegeria pomeroyi DSS-3 1687 1.77352E-4 2.82929E-4 2.07522E-4 2.42177E-4 SPO1686 K04094 nan Folate-dependent tRNA-U54 methylase TrmFO/GidA (TrmFO) (PUBMED:16027442)
Ruegeria pomeroyi DSS-3 1688 1.94633E-4 3.65557E-4 2.72134E-4 1.36068E-4 SPO1687 K01692 beta-Oxidation Enoyl-CoA hydratase/carnithine racemase (CaiD) (PDB:1DCI)
Ruegeria pomeroyi DSS-3 1689 1.49436E-5 1.48895E-5 SPO1688 nan Acyl-CoA thioesterase PaaI, contains HGG motif (PaaI) (PDB:1PSU)
Ruegeria pomeroyi DSS-3 1690 SPO1689 nan Uncharacterized conserved protein YjiS, DUF1127 family (YjiS)
Ruegeria pomeroyi DSS-3 1691 1.17597E-6 1.17597E-6 1.17597E-6 SPO1690 nan DNA-binding transcriptional regulator, MocR family, contains an aminotransferase domain (ARO8) (PDB:2R2N)
Ruegeria pomeroyi DSS-3 1692 0.004682473 0.003777176 0.00363831 0.004645138 SPO1691 K02871 nan Ribosomal protein L13 (RplM) (PDB:1VS6)
Ruegeria pomeroyi DSS-3 1693 0.006015225 0.001573595 0.004705776 5.01126E-4 SPO1692 K02996 nan Ribosomal protein S9 (RpsI) (PDB:4V4H)
Ruegeria pomeroyi DSS-3 1694 2.01159E-4 6.66309E-5 1.44104E-4 1.4893E-4 SPO1693 nan Predicted ATPase
Ruegeria pomeroyi DSS-3 1695 5.23436E-5 4.47479E-5 1.54457E-5 2.34545E-5 SPO1694 nan ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase (RfaE) (PDB:5X9Q)
Ruegeria pomeroyi DSS-3 1696 3.14265E-6 1.02136E-5 2.35699E-6 SPO1695 K01473 nan N-methylhydantoinase A/oxoprolinase/acetone carboxylase, beta subunit (HyuA)
Ruegeria pomeroyi DSS-3 1697 2.50082E-6 2.50082E-6 SPO1696 K01474 nan N-methylhydantoinase B/oxoprolinase/acetone carboxylase, alpha subunit (HyuB) (PDB:5L9W)
Ruegeria pomeroyi DSS-3 1698 1.5255E-6 SPO1697 K00817 Histidine biosynthesis, PRPP => histidine Histidinol-phosphate/aromatic aminotransferase or cobyric acid decarboxylase (HisC) (PDB:4R2N)
Ruegeria pomeroyi DSS-3 1699 1.23411E-6 2.27875E-6 SPO1698 K01799 Nicotinate degradation, nicotinate => fumarate Maleate cis-trans isomerase (PDB:2DGD)
Ruegeria pomeroyi DSS-3 1700 SPO1699 nan 2-methylcitrate dehydratase PrpD (PrpD) (PDB:1SZQ)
Ruegeria pomeroyi DSS-3 1701 5.20185E-5 5.16987E-5 5.00287E-5 6.82212E-5 SPO1700 K17064 nan Phosphoglycerate dehydrogenase or related dehydrogenase (SerA) (PDB:3OET)
Ruegeria pomeroyi DSS-3 1702 1.84909E-5 1.34274E-6 4.74599E-5 2.52709E-5 SPO1701 K01714 Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine 4-hydroxy-tetrahydrodipicolinate synthase/N-acetylneuraminate lyase (DapA) (PDB:2R91) (PUBMED:27574185)
Ruegeria pomeroyi DSS-3 1703 SPO1702 nan
Ruegeria pomeroyi DSS-3 1704 SPO1703 K01796 Bile acid biosynthesis, cholesterol => cholate/chenodeoxycholate Crotonobetainyl-CoA:carnitine CoA-transferase CaiB and related acyl-CoA transferases (CaiB) (PDB:1P5H)
Ruegeria pomeroyi DSS-3 1705 SPO1704 nan Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH domain (GlxA)
Ruegeria pomeroyi DSS-3 1706 SPO1705 nan Uncharacterized protein, contains phage Mu head morphogenesis gpF-like domain
Ruegeria pomeroyi DSS-3 1707 SPO1707 K11963 nan ABC-type branched-chain amino acid transport system, ATPase component LivF (LivF) (PDB:1JI0) (PUBMED:26527648;32250026)
Ruegeria pomeroyi DSS-3 1708 SPO1707a K11962 nan ABC-type uncharacterized transport system, ATPase component (PUBMED:10686096)
Ruegeria pomeroyi DSS-3 1709 SPO1708 K11961 nan ABC-type branched-chain amino acid transport system, permease component (LivM)
Ruegeria pomeroyi DSS-3 1710 SPO1709 K11960 nan Branched-chain amino acid ABC-type transport system, permease component (LivH)
Ruegeria pomeroyi DSS-3 1711 SPO1710 K11959 nan ABC-type branched-chain amino acid transport system, periplasmic component (LivK) (PDB:1USG)
Ruegeria pomeroyi DSS-3 1712 SPO1711 K03190 nan Urease accessory protein UreH (UreH) (PDB:3SF5)
Ruegeria pomeroyi DSS-3 1713 SPO1712 K01430 nan Urease gamma subunit (UreA) (PDB:1A5K)
Ruegeria pomeroyi DSS-3 1714 SPO1713 K01429 nan Urease beta subunit (UreB)
Ruegeria pomeroyi DSS-3 1715 SPO1714 K01428 nan Urease alpha subunit (UreC) (PDB:5A6T)
Ruegeria pomeroyi DSS-3 1716 SPO1715 K03187 nan Urease accessory protein UreE (UreE) (PDB:1EAR)
Ruegeria pomeroyi DSS-3 1717 SPO1716 K03188 nan Urease accessory protein UreF (UreF) (PDB:3SF5)
Ruegeria pomeroyi DSS-3 1718 SPO1717 K03189 nan Hydrogenase/urease maturation factor HypB, Ni2+-binding GTPase (HypB) (PDB:2HF8) (PUBMED:24338018;23899293)
Ruegeria pomeroyi DSS-3 1719 SPO1718 nan
Ruegeria pomeroyi DSS-3 1720 SPO3897 nan Site-specific DNA recombinase SpoIVCA/DNA invertase PinE (SpoIVCA) (PDB:1GDT)
Ruegeria pomeroyi DSS-3 1721 SPO1719 K11690 nan TRAP-type C4-dicarboxylate transport system, large permease component (DctQ)
Ruegeria pomeroyi DSS-3 1722 SPO1720 K21394 nan TRAP-type C4-dicarboxylate transport system, small permease component YiaM (DctM)
Ruegeria pomeroyi DSS-3 1723 7.18779E-4 0.001296889 0.001461247 7.85003E-4 SPO1721 K21395 nan TRAP-type C4-dicarboxylate transport system, periplasmic component (DctP) (PDB:2CEX)
Ruegeria pomeroyi DSS-3 1724 1.13702E-6 SPO1722 K22293 nan DNA-binding transcriptional regulator, GntR family (GntR) (PDB:3FMS)
Ruegeria pomeroyi DSS-3 1725 6.10199E-6 SPO1723 K01686 D-Glucuronate degradation, D-glucuronate => pyruvate + D-glyceraldehyde 3P D-mannonate dehydratase (UxuA) (PDB:1TZ9)
Ruegeria pomeroyi DSS-3 1726 SPO1724 K00040 D-Glucuronate degradation, D-glucuronate => pyruvate + D-glyceraldehyde 3P Mannitol-1-phosphate/altronate dehydrogenases (MtlD) (PDB:1LJ8)
Ruegeria pomeroyi DSS-3 1727 2.22339E-5 2.17848E-4 2.44573E-5 1.44521E-5 SPO1725 nan Tetratricopeptide (TPR) repeat (TPR) (PDB:3AS4)
Ruegeria pomeroyi DSS-3 1728 3.38164E-5 1.36442E-5 2.70531E-6 1.53301E-5 SPO3896 nan DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA (AcrR) (PDB:2QOP)
Ruegeria pomeroyi DSS-3 1729 5.08128E-4 4.58001E-4 3.77066E-4 3.51523E-4 SPO1727 K22468 nan Polyphosphate kinase 2, PPK2 family (PPK2) (PDB:3CZP)
Ruegeria pomeroyi DSS-3 1730 5.66613E-5 4.35965E-5 7.75823E-5 8.01975E-5 SPO1728 nan 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase MenH and related esterases, alpha/beta hydrolase fold (MenH) (PDB:4MYS)
Ruegeria pomeroyi DSS-3 1731 9.83066E-4 7.60782E-4 8.94763E-4 0.001049659 SPO1729 K00651 Methionine biosynthesis, aspartate => homoserine => methionine Homoserine O-succinyltransferase (MetA) (PDB:2GHR)
Ruegeria pomeroyi DSS-3 1732 SPO_tRNA-Glu-2 nan
Ruegeria pomeroyi DSS-3 1733 SPO_tRNA-Glu-3 nan
Ruegeria pomeroyi DSS-3 1734 2.04323E-5 5.01655E-5 2.55818E-5 2.02661E-5 SPO1732 K07462 nan ssDNA-specific exonuclease RecJ, DHH superfamily, may be involved in archaeal DNA replication intiation (RecJ) (PDB:1IR6)
Ruegeria pomeroyi DSS-3 1735 0.003776687 0.005169998 0.003421541 0.00290008 SPO1733 K11532 Gluconeogenesis, oxaloacetate => fructose-6P Fructose-1,6-bisphosphatase/sedoheptulose 1,7-bisphosphatase or related protein (GlpX) (PDB:1NI9)
Ruegeria pomeroyi DSS-3 1736 0.001864386 0.004526482 0.00257481 0.00223136 SPO1734 K00003 Threonine biosynthesis, aspartate => homoserine => threonine Homoserine dehydrogenase (ThrA) (PDB:5AVO) (PUBMED:29124164)
Ruegeria pomeroyi DSS-3 1737 1.97902E-5 4.47936E-6 1.66568E-4 9.23544E-5 SPO1735 nan
Ruegeria pomeroyi DSS-3 1738 2.83082E-6 1.34274E-6 1.13233E-5 SPO1736 K22108 nan DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA (AcrR) (PDB:2QOP)
Ruegeria pomeroyi DSS-3 1739 9.06235E-5 9.41621E-5 1.47414E-4 9.96859E-5 SPO1737 K06911 nan Redox-sensitive bicupin YhaK, pirin superfamily (YhaK) (PDB:1J1L) (PUBMED:18561187)
Ruegeria pomeroyi DSS-3 1740 SPO1738 K18979 nan Epoxyqueuosine reductase QueG (queuosine biosynthesis) (QueG) (PDB:5D08) (PUBMED:2150253)
Ruegeria pomeroyi DSS-3 1741 2.8163E-5 4.15882E-5 6.19586E-5 2.06529E-5 SPO1739 nan
Ruegeria pomeroyi DSS-3 1742 1.15011E-5 SPO1740 nan Flp pilus assembly protein TadG, includes N-terminal TadE domain (TadG) (PUBMED:12010986)
Ruegeria pomeroyi DSS-3 1743 SPO1741 nan Flp pilus assembly protein TadG, includes N-terminal TadE domain (TadG) (PUBMED:12010986)
Ruegeria pomeroyi DSS-3 1744 8.32089E-6 9.84192E-7 SPO1742 nan Flp pilus assembly protein TadG, includes N-terminal TadE domain (TadG) (PUBMED:12010986)
Ruegeria pomeroyi DSS-3 1745 0.017338362 0.036970343 0.023293568 0.023971966 SPO1743 K00261 Methylaspartate cycle Glutamate dehydrogenase/leucine dehydrogenase (GdhA) (PDB:1B3B) (PUBMED:24391520)
Ruegeria pomeroyi DSS-3 1746 4.74111E-5 3.7255E-6 3.07294E-5 2.98514E-5 SPO1744 K22084 nan Glycine/D-amino acid oxidase (deaminating) (DadA) (PDB:3AWI)
Ruegeria pomeroyi DSS-3 1747 9.73721E-7 SPO1745 K22085 nan Sarcosine oxidase delta subunit (SoxD) (PDB:2GAH)
Ruegeria pomeroyi DSS-3 1748 2.30745E-4 8.55763E-4 2.67001E-4 1.97487E-4 SPO1746 K22086 nan Glycine cleavage system protein T (aminomethyltransferase) (GcvT) (PDB:2GAH) (PUBMED:25433025;25505271)!!!NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase, or a related oxidoreductase (FadH2) (PDB:1VRQ)
Ruegeria pomeroyi DSS-3 1749 7.26425E-6 3.0182E-4 2.90571E-6 1.356E-5 SPO1747 K22087 nan Sarcosine oxidase gamma subunit (SoxG)
Ruegeria pomeroyi DSS-3 1750 2.01739E-4 1.57216E-4 2.6525E-4 2.05475E-4 SPO1748 nan
Ruegeria pomeroyi DSS-3 1751 4.4002E-5 8.12449E-5 2.2001E-5 3.1027E-5 SPO1749 K02316 nan DNA primase (bacterial type) (DnaG) (PDB:3B39) (PUBMED:28128549)
Ruegeria pomeroyi DSS-3 1752 0.001887595 0.012586939 0.002395585 0.002037509 SPO1750 K03086 nan DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) (RpoD) (PDB:1SIG)
Ruegeria pomeroyi DSS-3 1753 1.22263E-4 4.83168E-4 2.15129E-4 1.60344E-4 SPO1751 nan
Ruegeria pomeroyi DSS-3 1754 SPO1752 nan Thiamin phosphate synthase YjbQ, UPF0047 family (YjbQ) (PDB:1VE0)
Ruegeria pomeroyi DSS-3 1755 0.00121277 6.45028E-4 0.00357201 0.002085237 SPO1753 K07738 nan Transcriptional regulator NrdR, contains Zn-ribbon and ATP-cone domains (NrdR)
Ruegeria pomeroyi DSS-3 1756 3.92271E-5 1.14743E-4 8.24774E-5 4.87824E-5 SPO1754 K11752 Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD Riboflavin biosynthesis protein RibD, pyrimidine deaminase domain (RibD1) (PDB:2O7P)!!!Pyrimidine reductase, riboflavin biosynthesis (RibD) (PDB:2O7P)
Ruegeria pomeroyi DSS-3 1757 5.35182E-6 4.96096E-5 1.86627E-5 9.60582E-6 SPO1755 K07266 nan Capsule polysaccharide export protein KpsC/LpsZ (KpsC) (PDB:5FA0)
Ruegeria pomeroyi DSS-3 1758 0.001364207 0.004231383 0.001758732 0.00193208 SPO1756 K01991 nan Periplasmic protein Wza involved in polysaccharide export, contains SLBB domain of the beta-grasp fold (Wza) (PDB:2J58) (PUBMED:17250770)
Ruegeria pomeroyi DSS-3 1759 6.10199E-6 SPO1757 K07265 nan Capsule polysaccharide modification protein KpsS (KpsS)
Ruegeria pomeroyi DSS-3 1760 SPO1758 nan
Ruegeria pomeroyi DSS-3 1761 1.12652E-5 1.46528E-4 5.72648E-5 1.12652E-5 SPO1759 K00793 Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD Riboflavin synthase alpha chain (RibC) (PDB:1I8D)
Ruegeria pomeroyi DSS-3 1762 SPO1760 nan
Ruegeria pomeroyi DSS-3 1763 0.002918893 0.002484851 0.002293889 0.002729208 SPO1761 K14652 Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD 3,4-dihydroxy-2-butanone 4-phosphate synthase (RibB) (PDB:1G57)!!!GTP cyclohydrolase II (RibA) (PDB:2BZ0)
Ruegeria pomeroyi DSS-3 1764 1.95064E-4 3.17673E-4 2.00065E-4 1.98065E-4 SPO1762 K00794 Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD 6,7-dimethyl-8-ribityllumazine synthase (Riboflavin synthase beta chain) (RibE) (PDB:1C2Y)
Ruegeria pomeroyi DSS-3 1765 4.15317E-4 1.71112E-4 2.87175E-4 3.27219E-4 SPO1763 K03625 nan Transcription antitermination protein NusB (NusB) (PDB:1EY1) (PUBMED:21652641)
Ruegeria pomeroyi DSS-3 1766 2.1286E-6 SPO1764 nan DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains (CitB) (PDB:1A04)
Ruegeria pomeroyi DSS-3 1767 SPO1765 nan
Ruegeria pomeroyi DSS-3 1768 SPO1766 nan Uncharacterized conserved protein (PDB:3DNX)
Ruegeria pomeroyi DSS-3 1769 4.29046E-5 3.08033E-5 7.03636E-5 2.51707E-5 SPO1767 nan Ribosomal protein S18 acetylase RimI and related acetyltransferases (RimI) (PDB:1GHE)
Ruegeria pomeroyi DSS-3 1770 SPO_tRNA-His-1 nan
Ruegeria pomeroyi DSS-3 1771 9.83378E-6 2.02572E-4 4.99253E-5 7.41316E-5 SPO1769 nan
Ruegeria pomeroyi DSS-3 1772 1.58309E-4 3.15788E-4 2.18551E-4 1.02738E-4 SPO1770 nan
Ruegeria pomeroyi DSS-3 1773 SPO1771 K11690 nan TRAP-type C4-dicarboxylate transport system, large permease component (DctQ)
Ruegeria pomeroyi DSS-3 1774 SPO1772 K21394 nan TRAP-type C4-dicarboxylate transport system, small permease component YiaM (DctM)
Ruegeria pomeroyi DSS-3 1775 5.75211E-4 0.001369669 0.001106195 3.87952E-4 SPO1773 K21395 nan TRAP-type C4-dicarboxylate transport system, periplasmic component (DctP) (PDB:2CEX)
Ruegeria pomeroyi DSS-3 1776 3.05099E-6 SPO1774 K00452 Tryptophan metabolism, tryptophan => kynurenine => 2-aminomuconate Cupin domain protein related to quercetin dioxygenase (QdoI) (PDB:2H0V)
Ruegeria pomeroyi DSS-3 1777 2.29782E-6 5.49179E-5 4.67223E-5 9.19128E-6 SPO1775 nan Anti-sigma factor ChrR, cupin superfamily (ChrR) (PDB:2Q1Z)
Ruegeria pomeroyi DSS-3 1778 6.98843E-5 4.56575E-4 1.01013E-4 1.03487E-4 SPO1776 K17722 Pyrimidine degradation, uracil => beta-alanine, thymine => 3-aminoisobutanoate NADPH-dependent glutamate synthase beta chain or related oxidoreductase (GltD) (PDB:1H7X)
Ruegeria pomeroyi DSS-3 1779 8.22503E-6 5.67285E-5 5.56771E-5 1.72936E-5 SPO1777 K17723 Pyrimidine degradation, uracil => beta-alanine, thymine => 3-aminoisobutanoate Dihydroorotate dehydrogenase (PyrD) (PDB:1GT8)!!!Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfB subunit (RnfB) (PUBMED:24045950)
Ruegeria pomeroyi DSS-3 1780 SPO1778 nan
Ruegeria pomeroyi DSS-3 1781 SPO1779 nan Predicted arabinose efflux permease AraJ, MFS family (AraJ) (PDB:4LDS)
Ruegeria pomeroyi DSS-3 1782 1.7413E-5 1.7413E-5 6.9652E-5 SPO1780 K09017 nan DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA (AcrR) (PDB:2QOP)
Ruegeria pomeroyi DSS-3 1783 1.22113E-4 5.73435E-4 1.24533E-4 1.00331E-4 SPO1781 K06016 Pyrimidine degradation, uracil => beta-alanine, thymine => 3-aminoisobutanoate Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase or related deacylase (ArgE) (PDB:1CG2)
Ruegeria pomeroyi DSS-3 1784 SPO1782 nan
Ruegeria pomeroyi DSS-3 1785 1.52613E-4 0.001452643 2.48492E-4 6.27849E-5 SPO1783 K01464 Pyrimidine degradation, uracil => beta-alanine, thymine => 3-aminoisobutanoate Dihydroorotase or related cyclic amidohydrolase (AllB) (PDB:1J79)
Ruegeria pomeroyi DSS-3 1786 8.21764E-5 3.38054E-5 3.87498E-5 6.0129E-5 SPO1784 nan Uncharacterized conserved protein, RmlC-like cupin domain (RmlC)
Ruegeria pomeroyi DSS-3 1787 3.49664E-5 1.15044E-5 3.42808E-5 2.57106E-5 SPO1785 K02049 nan ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component (TauB)
Ruegeria pomeroyi DSS-3 1788 6.65671E-6 1.66418E-6 SPO1786 K02050 nan ABC-type nitrate/sulfonate/bicarbonate transport system, permease component (TauC)
Ruegeria pomeroyi DSS-3 1789 SPO1787 K02050 nan ABC-type nitrate/sulfonate/bicarbonate transport system, permease component (TauC)
Ruegeria pomeroyi DSS-3 1790 0.001113445 0.001989651 0.002383296 0.00160328 SPO1788 K02051 nan ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component (TauA) (PDB:2X26)
Ruegeria pomeroyi DSS-3 1791 SPO1789 K05773 nan ABC-type tungstate transport system, periplasmic component (TupA)
Ruegeria pomeroyi DSS-3 1792 SPO1790 nan ABC-type phosphate transport system, ATPase component (PstB)
Ruegeria pomeroyi DSS-3 1793 SPO1791 K05772 nan ABC-type tungstate transport system, permease component TupA (TupB)
Ruegeria pomeroyi DSS-3 1794 8.04831E-5 9.42458E-5 6.12303E-5 5.68116E-5 SPO1792 K07219 nan Periplasmic molybdate-binding protein/domain (YvgK)
Ruegeria pomeroyi DSS-3 1795 SPO1793 K08738 nan WD40 repeat (WD40) (PDB:3UVN)!!!Cytochrome c2 (Cyc7) (PDB:1YEA)
Ruegeria pomeroyi DSS-3 1796 2.23584E-5 SPO1794 K00127 nan Cytochrome b subunit of formate dehydrogenase (FdnI) (PDB:1KQF)
Ruegeria pomeroyi DSS-3 1797 0.00337726 0.001886351 8.3631E-6 SPO1795 K00124 nan Fe-S-cluster-containing dehydrogenase component (DMSO reductase) (HybA) (PDB:2VPW)
Ruegeria pomeroyi DSS-3 1798 5.69688E-7 0.012286022 0.005200489 1.02544E-5 SPO1796 K00123 nan Anaerobic selenocysteine-containing dehydrogenase (BisC) (PDB:1EU1)
Ruegeria pomeroyi DSS-3 1799 SPO1797 nan
Ruegeria pomeroyi DSS-3 1800 SPO1798 K23349 nan Cytoplasmic chaperone TorD involved in molybdoenzyme TorA maturation (TorD) (PDB:1N1C)
Ruegeria pomeroyi DSS-3 1801 SPO1799 nan
Ruegeria pomeroyi DSS-3 1802 2.40742E-4 8.13699E-5 9.27994E-5 2.25651E-4 SPO1800 nan Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, delta subunit (PorD) (PDB:5C4I)!!!Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits (DsrA)
Ruegeria pomeroyi DSS-3 1803 SPO1801 nan
Ruegeria pomeroyi DSS-3 1804 1.09084E-4 6.11341E-5 1.42937E-4 1.52968E-4 SPO1802 nan
Ruegeria pomeroyi DSS-3 1805 0.001385393 0.004145035 0.003050302 0.001163699 SPO1803 K03593 nan Fe-S cluster carrier ATPase, Mrp/ApbC/NBP35 family (Mrp) (PDB:2PH1) (PUBMED:18616280;19114487;31709520)
Ruegeria pomeroyi DSS-3 1806 1.09696E-4 1.71375E-5 2.02534E-5 SPO1804 nan Biotin-(acetyl-CoA carboxylase) ligase (BirA2) (PDB:1BIA) (PUBMED:32188788)
Ruegeria pomeroyi DSS-3 1807 1.95149E-4 3.47269E-5 1.20888E-4 5.52633E-5 SPO1805 nan
Ruegeria pomeroyi DSS-3 1808 1.32332E-5 1.32332E-5 2.1504E-5 SPO1806 nan FMN reductase RutF, DIM6/NTAB family (RutF) (PDB:1EJE)
Ruegeria pomeroyi DSS-3 1809 2.25514E-4 1.44111E-4 2.41483E-5 SPO1807 K02342 nan DNA polymerase III, alpha subunit (gram-positive type) (PolC)
Ruegeria pomeroyi DSS-3 1810 1.95064E-4 2.4408E-5 8.30271E-5 2.23573E-4 SPO1808 nan
Ruegeria pomeroyi DSS-3 1811 0.003002389 0.001217784 0.001622807 SPO1809 K07182 nan Signal-transduction protein containing cAMP-binding, CBS, and nucleotidyltransferase domains
Ruegeria pomeroyi DSS-3 1812 7.81239E-4 1.3811E-4 6.51803E-4 8.01271E-4 SPO1810 K14393 nan Na+(or H+)/acetate symporter ActP (ActP)
Ruegeria pomeroyi DSS-3 1813 SPO1811 nan Uncharacterized membrane protein, DUF4212 domain
Ruegeria pomeroyi DSS-3 1814 0.005023656 0.001161169 0.004028925 0.00552324 SPO1812 K00939 Adenine ribonucleotide biosynthesis, IMP => ADP,ATP Adenylate kinase or related kinase (Adk) (PDB:1AK2)
Ruegeria pomeroyi DSS-3 1815 0.008542083 0.01786891 0.010099349 0.006655365 SPO1813 K01895 Methanogenesis, acetate => methane Acyl-coenzyme A synthetase/AMP-(fatty) acid ligase (Acs) (PDB:4B2O) (PUBMED:14638756)
Ruegeria pomeroyi DSS-3 1816 8.19426E-4 SPO1814 K21395 nan TRAP-type C4-dicarboxylate transport system, periplasmic component (DctP) (PDB:2CEX)
Ruegeria pomeroyi DSS-3 1817 SPO1815 K21394 nan TRAP-type mannitol/chloroaromatic compound transport system, small permease component (FcbT2)
Ruegeria pomeroyi DSS-3 1818 SPO1816 K11690 nan TRAP-type C4-dicarboxylate transport system, large permease component (DctQ)
Ruegeria pomeroyi DSS-3 1819 SPO1817 K07090 nan Sulfite exporter TauE/SafE/YfcA and related permeases, UPF0721 family (TauE) (PUBMED:21183667;22797525)
Ruegeria pomeroyi DSS-3 1820 SPO1818 K07090 nan Sulfite exporter TauE/SafE/YfcA and related permeases, UPF0721 family (TauE) (PUBMED:21183667;22797525)
Ruegeria pomeroyi DSS-3 1821 SPO1819 K03651 nan 3',5'-cyclic AMP phosphodiesterase CpdA (CpdA) (PDB:2ZO9)
Ruegeria pomeroyi DSS-3 1822 SPO1820 K02027 nan ABC-type glycerol-3-phosphate transport system, periplasmic component (UgpB) (PDB:2Z8D)
Ruegeria pomeroyi DSS-3 1823 SPO1821 nan ABC-type glycerol-3-phosphate transport system, permease component (UgpE) (PDB:1VR4)
Ruegeria pomeroyi DSS-3 1824 SPO1822 nan ABC-type sugar transport system, permease component (UgpA) (PDB:3FH6)
Ruegeria pomeroyi DSS-3 1825 SPO1823 nan ABC-type sugar transport system, ATPase component MalK (MalK) (PDB:2ONK)
Ruegeria pomeroyi DSS-3 1826 SPO1824 nan DNA-binding transcriptional regulator, LysR family (LysR) (PDB:2FYI)
Ruegeria pomeroyi DSS-3 1827 5.07325E-6 1.58539E-5 3.80494E-6 SPO1825 K01915 nan Glutamine synthetase (GlnA) (PDB:1F1H)
Ruegeria pomeroyi DSS-3 1828 3.66805E-6 SPO1826 nan DNA-binding transcriptional regulator, MurR/RpiR family, contains HTH and SIS domains (RpiR) (PDB:2O3F)
Ruegeria pomeroyi DSS-3 1829 SPO1827 nan Predicted N-formylglutamate amidohydrolase (HutG2) (PDB:2ODF)
Ruegeria pomeroyi DSS-3 1830 SPO1828 K09020 Pyrimidine degradation, uracil => 3-hydroxypropanoate Nicotinamidase-related amidase (PncA) (PDB:1ILW)
Ruegeria pomeroyi DSS-3 1831 SPO1829 K01995 nan ABC-type branched-chain amino acid transport system, ATPase component LivG (LivG) (PDB:1G9X) (PUBMED:29514851)
Ruegeria pomeroyi DSS-3 1832 1.92356E-4 1.17645E-4 2.09756E-4 1.25853E-4 SPO1830 K01999 nan ABC-type branched-chain amino acid transport system, periplasmic component (LivK) (PDB:1USG)
Ruegeria pomeroyi DSS-3 1833 SPO1831 K01996 nan ABC-type branched-chain amino acid transport system, ATPase component LivF (LivF) (PDB:1JI0) (PUBMED:26527648;32250026)
Ruegeria pomeroyi DSS-3 1834 SPO1832 K01997 nan Branched-chain amino acid ABC-type transport system, permease component (LivH)
Ruegeria pomeroyi DSS-3 1835 SPO1833 K01998 nan ABC-type branched-chain amino acid transport system, permease component (LivM)
Ruegeria pomeroyi DSS-3 1836 1.14412E-5 3.30125E-5 1.76019E-6 SPO1834 K01455 nan Acetamidase/formamidase (FmdA) (PDB:2F4L)
Ruegeria pomeroyi DSS-3 1837 8.24594E-5 2.50366E-4 1.15993E-4 2.45179E-4 SPO1835 nan ABC-type sugar transport system, ATPase component MalK (MalK) (PDB:2ONK)
Ruegeria pomeroyi DSS-3 1838 4.01446E-6 2.12666E-5 1.60579E-5 6.42314E-6 SPO1836 nan Predicted dehydrogenase (MviM) (PDB:3UUW)
Ruegeria pomeroyi DSS-3 1839 SPO1837 K10119 nan ABC-type glycerol-3-phosphate transport system, permease component (UgpE) (PDB:1VR4)
Ruegeria pomeroyi DSS-3 1840 SPO1838 nan ABC-type sugar transport system, permease component (UgpA) (PDB:3FH6)
Ruegeria pomeroyi DSS-3 1841 9.67004E-4 0.002497235 0.001222891 8.33449E-4 SPO1839 K10117 nan ABC-type glycerol-3-phosphate transport system, periplasmic component (UgpB) (PDB:2Z8D)
Ruegeria pomeroyi DSS-3 1842 7.27389E-6 6.10199E-6 1.81847E-6 SPO1840 K07106 nan N-acetylmuramic acid 6-phosphate (MurNAc-6-P) etherase (MurQ) (PDB:4S12) (PUBMED:10095793)
Ruegeria pomeroyi DSS-3 1843 4.63834E-5 2.4408E-5 3.3396E-5 5.0094E-5 SPO1841 K18676 nan BadF-type ATPase, related to human N-acetylglucosamine kinase (BadF) (PUBMED:17954692;12761179;12761179)
Ruegeria pomeroyi DSS-3 1844 9.04653E-5 5.93383E-6 7.02437E-5 6.38579E-5 SPO1842 K24967 nan DNA-binding transcriptional regulator, GntR family (MngR) (PDB:2WV0)
Ruegeria pomeroyi DSS-3 1845 1.6011E-6 1.5255E-5 1.6011E-6 3.14884E-5 SPO1843 K00820 UDP-N-acetyl-D-glucosamine biosynthesis, eukaryotes, glucose => UDP-GlcNAc Fructoselysine-6-P-deglycase FrlB or related protein, duplicated sugar isomerase (SIS) domain (AgaS) (PDB:3C3J) (PUBMED:16153181)
Ruegeria pomeroyi DSS-3 1846 2.09005E-5 2.30626E-5 1.39337E-5 SPO1844 K01443 nan N-acetylglucosamine-6-phosphate deacetylase (NagA) (PDB:1O12)
Ruegeria pomeroyi DSS-3 1847 2.07903E-5 6.73021E-5 4.55034E-5 8.89148E-6 SPO1845 nan Anaerobic selenocysteine-containing dehydrogenase (BisC) (PDB:1EU1)
Ruegeria pomeroyi DSS-3 1848 1.91359E-4 0.003032394 0.001215971 1.19036E-4 SPO1846 K01999 nan ABC-type branched-chain amino acid transport system, periplasmic component (LivK) (PDB:1USG)
Ruegeria pomeroyi DSS-3 1849 1.66834E-5 7.8704E-6 SPO1847 K01897 beta-Oxidation, acyl-CoA synthesis Long-chain acyl-CoA synthetase (AMP-forming) (FAA1)
Ruegeria pomeroyi DSS-3 1850 1.62E-6 SPO1848 K01996 nan ABC-type branched-chain amino acid transport system, ATPase component LivF (LivF) (PDB:1JI0) (PUBMED:26527648;32250026)
Ruegeria pomeroyi DSS-3 1851 SPO1849 K01995 nan ABC-type branched-chain amino acid transport system, ATPase component LivG (LivG) (PDB:1G9X) (PUBMED:29514851)
Ruegeria pomeroyi DSS-3 1852 SPO1850 K01998 nan ABC-type branched-chain amino acid transport system, permease component (LivM)
Ruegeria pomeroyi DSS-3 1853 SPO1851 K01997 nan Branched-chain amino acid ABC-type transport system, permease component (LivH)
Ruegeria pomeroyi DSS-3 1854 7.78807E-4 0.001842713 5.1974E-4 5.12246E-4 SPO1852 nan NADPH:quinone reductase or related Zn-dependent oxidoreductase (Qor) (PDB:2VCY)
Ruegeria pomeroyi DSS-3 1855 SPO1853 nan DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA (AcrR) (PDB:2QOP)
Ruegeria pomeroyi DSS-3 1856 SPO1854 nan
Ruegeria pomeroyi DSS-3 1857 0.001069326 0.002000963 0.001591086 0.001071745 SPO1855 nan
Ruegeria pomeroyi DSS-3 1858 SPO1856 K07058 nan Uncharacterized membrane protein, BrkB/YihY/UPF0761 family (not an RNase) (BrkB)
Ruegeria pomeroyi DSS-3 1859 SPO1857 nan
Ruegeria pomeroyi DSS-3 1860 9.42796E-6 5.15014E-5 1.4142E-5 3.22122E-5 SPO1858 K02427 nan 23S rRNA U2552 (ribose-2'-O)-methylase RlmE/FtsJ (RlmE) (PDB:1EIZ) (PUBMED:10769117)
Ruegeria pomeroyi DSS-3 1861 5.93707E-6 2.85893E-5 3.71067E-6 1.08846E-5 SPO1859 K01524 nan Exopolyphosphatase/pppGpp-phosphohydrolase (GppA) (PDB:1T6C)
Ruegeria pomeroyi DSS-3 1862 0.002172629 0.002390888 0.002391162 0.001463309 SPO1860 K07093 nan Secreted phosphatase, PhoX family (PhoX) (PDB:3ZWU)
Ruegeria pomeroyi DSS-3 1863 5.60387E-6 1.15938E-4 7.99485E-4 1.06474E-4 SPO1861 nan
Ruegeria pomeroyi DSS-3 1864 8.82715E-5 SPO1862 nan 5,10-methylenetetrahydrofolate reductase (MetF) (PDB:1B5T)
Ruegeria pomeroyi DSS-3 1865 0.001186258 0.006883781 0.005856871 0.001226448 SPO1863 nan Methionine synthase I, cobalamin-binding domain (MetH2) (PDB:4DJD)
Ruegeria pomeroyi DSS-3 1866 SPO1864 nan
Ruegeria pomeroyi DSS-3 1867 0.003455013 0.008588189 0.004067841 0.003987871 SPO1865 K00615 Pentose phosphate pathway (Pentose phosphate cycle) Transketolase (TktA) (PDB:1AY0)
Ruegeria pomeroyi DSS-3 1868 8.43449E-4 0.003778558 9.35291E-4 6.27276E-4 SPO1866 nan
Ruegeria pomeroyi DSS-3 1869 6.0787E-4 6.95535E-4 0.001478451 0.001017309 SPO1867 K09888 nan Cell division protein ZapA, inhibits GTPase activity of FtsZ (ZapA) (PDB:1T3U)
Ruegeria pomeroyi DSS-3 1870 0.001070899 0.002234451 0.002132645 0.001015981 SPO1868 K07390 nan Glutaredoxin-related protein (GrxD) (PDB:1YKA)
Ruegeria pomeroyi DSS-3 1871 3.52038E-4 3.19736E-4 0.001748454 5.39791E-4 SPO1869 nan DNA-binding global transcriptional regulator BolA, affects cell shape, cell division and biofilm formation (BolA) (PDB:2DHM) (PUBMED:19111750;2569159)
Ruegeria pomeroyi DSS-3 1872 0.00184078 0.00962594 0.002000417 0.002045227 SPO1870 K23269 Inosine monophosphate biosynthesis, PRPP + glutamine => IMP Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain (PurL1) (PDB:3VIU)
Ruegeria pomeroyi DSS-3 1873 7.92936E-4 0.006274872 6.74443E-4 8.80476E-4 SPO1871 K22044 nan Small-conductance mechanosensitive channel (MscS) (PDB:2OAU)
Ruegeria pomeroyi DSS-3 1874 5.54477E-4 4.60315E-4 1.83648E-4 4.3381E-4 SPO1872 K03566 nan DNA-binding transcriptional regulator, LysR family (LysR) (PDB:2FYI)
Ruegeria pomeroyi DSS-3 1875 1.65139E-4 0.008926849 0.002595461 4.26068E-4 SPO1873 K04090 nan Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, gamma subunit (PorG) (PDB:1B0P)!!!TPP-dependent indolepyruvate ferredoxin oxidoreductase, alpha subunit (IorA)
Ruegeria pomeroyi DSS-3 1876 SPO1874 nan Putative hemolysin
Ruegeria pomeroyi DSS-3 1877 3.47065E-4 9.19301E-4 0.001565875 7.41085E-4 SPO1875 K01776 nan Glutamate racemase (MurI) (PDB:1B73)
Ruegeria pomeroyi DSS-3 1878 1.16419E-4 8.36078E-4 1.6379E-4 2.15175E-4 SPO1876 K00145 Ornithine biosynthesis, glutamate => ornithine N-acetyl-gamma-glutamylphosphate reductase (ArgC) (PDB:3DR3)
Ruegeria pomeroyi DSS-3 1879 1.86796E-4 6.14341E-4 2.62759E-4 2.41589E-4 SPO1877 K02197 nan Cytochrome c biogenesis protein CcmE (CcmE) (PDB:1J6Q)
Ruegeria pomeroyi DSS-3 1880 SPO1878 nan Lysozyme family protein (ZliS) (PDB:2IKB)
Ruegeria pomeroyi DSS-3 1881 SPO1879 nan
Ruegeria pomeroyi DSS-3 1882 3.10698E-5 7.82584E-5 9.51687E-6 2.51917E-5 SPO1880 K02198 nan Cytochrome c biogenesis protein CcmF (CcmF)
Ruegeria pomeroyi DSS-3 1883 1.46448E-4 1.22207E-4 1.50109E-4 1.47668E-4 SPO1881 K02200 nan Cytochrome c-type biogenesis protein CcmH/NrfF (NrfF) (PDB:2HL7)
Ruegeria pomeroyi DSS-3 1884 4.12949E-4 1.64959E-4 5.28603E-4 3.6399E-4 SPO1882 K15866 Phenylacetate degradation, phenylaxetate => acetyl-CoA/succinyl-CoA Enoyl-CoA hydratase/carnithine racemase (CaiD) (PDB:1DCI)
Ruegeria pomeroyi DSS-3 1885 4.24897E-6 4.24897E-6 SPO1883 nan Periplasmic serine protease, S1-C subfamily, contain C-terminal PDZ domain (DegQ) (PDB:2HGA) (PUBMED:29686141)
Ruegeria pomeroyi DSS-3 1886 0.001498497 0.002441552 0.003126054 0.001709096 SPO1884 K00548 Methionine biosynthesis, aspartate => homoserine => methionine Methionine synthase I (cobalamin-dependent), methyltransferase domain (MetH1) (PDB:1LT7)
Ruegeria pomeroyi DSS-3 1887 SPO1885 nan Predicted membrane flippase AglD2/YbhN, UPF0104 family (AglD2) (PUBMED:25583072)!!!Lysylphosphatidylglycerol synthetase MprF, lysyl-tRNA-binding C-terminal domain (MprF2) (PDB:5VRV) (PUBMED:14702396;30563904)
Ruegeria pomeroyi DSS-3 1888 0.002390236 0.00199572 0.008370184 0.001664971 SPO1886 nan Uncharacterized conserved protein, DUF1476 domain (PUBMED:16468998)
Ruegeria pomeroyi DSS-3 1889 0.001614717 0.002021591 0.002107009 0.002410407 SPO1887 K01923 Inosine monophosphate biosynthesis, PRPP + glutamine => IMP Phosphoribosylaminoimidazole-succinocarboxamide synthase (PurC) (PDB:1A48)
Ruegeria pomeroyi DSS-3 1890 0.001228426 8.25063E-4 0.001457251 0.001004419 SPO1888 K23264 Inosine monophosphate biosynthesis, PRPP + glutamine => IMP Phosphoribosylformylglycinamidine (FGAM) synthase, PurS subunit (PurS) (PDB:1GTD)
Ruegeria pomeroyi DSS-3 1891 1.4323E-4 7.24438E-5 3.88804E-4 2.92262E-4 SPO1889 nan D-arabinose 1-dehydrogenase, Zn-dependent alcohol dehydrogenase family (AdhP) (PDB:5O8Q)
Ruegeria pomeroyi DSS-3 1892 0.001424897 0.001701893 0.00107362 9.94459E-4 SPO1890 K23265 Inosine monophosphate biosynthesis, PRPP + glutamine => IMP Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain (PurL2) (PDB:1T3T)
Ruegeria pomeroyi DSS-3 1893 1.23542E-4 4.31812E-4 9.38607E-5 1.5975E-4 SPO1891 K10125 nan Signal transduction histidine kinase regulating C4-dicarboxylate transport system (PDB:4GCZ)
Ruegeria pomeroyi DSS-3 1894 0.010708988 0.02071233 0.025373137 0.014630752 SPO1892 nan DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains (AtoC) (PDB:1ZY2)
Ruegeria pomeroyi DSS-3 1895 0.002779907 0.010766871 0.00313008 0.003602201 SPO1893 K08300 nan Ribonuclease G or E (CafA) (PDB:1SLJ)
Ruegeria pomeroyi DSS-3 1896 SPO1895 K04085 nan Sulfur carrier protein TusA (tRNA thiolation, molybdenum cofactor biosynthesis) (TusA) (PDB:1DCJ) (PUBMED:23894086)
Ruegeria pomeroyi DSS-3 1897 SPO1896 K06196 nan Cytochrome c biogenesis protein CcdA (CcdA) (PDB:5VKV)
Ruegeria pomeroyi DSS-3 1898 1.20551E-5 2.13413E-6 7.59026E-6 1.8306E-5 SPO1897 nan
Ruegeria pomeroyi DSS-3 1899 4.88159E-6 3.24289E-5 3.051E-6 1.2204E-6 SPO1898 K21164 9-membered enediyne core biosynthesis, malonyl-CoA => 3-hydroxyhexadeca-4,6,8,10,12,14-hexaenoyl-ACP => 9-membered enediyne core Cytochrome P450 (CypX) (PDB:3A4Z)
Ruegeria pomeroyi DSS-3 1900 0.008786862 0.009032134 0.005939754 0.006224652 SPO1899 K01623 Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate Fructose-bisphosphate aldolase class 1 (Fba1)
Ruegeria pomeroyi DSS-3 1901 1.08748E-5 4.23217E-5 3.0812E-5 2.44684E-5 SPO1900 K01246 nan 3-methyladenine DNA glycosylase Tag (Tag) (PDB:1LMZ)
Ruegeria pomeroyi DSS-3 1902 2.05249E-4 1.25747E-4 4.53026E-4 5.93557E-4 SPO1901 K09780 nan YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHis (YciI) (PDB:1MWQ) (PUBMED:15779043;23955343)
Ruegeria pomeroyi DSS-3 1903 1.0351E-4 4.3658E-5 2.87528E-5 2.77944E-5 SPO1902 K16137 nan DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA (AcrR) (PDB:2QOP)
Ruegeria pomeroyi DSS-3 1904 SPO1903 nan Predicted DNA-binding protein, contains ribbon-helix-helix (RHH) domain (PDB:3KK4)
Ruegeria pomeroyi DSS-3 1905 SPO1904 nan
Ruegeria pomeroyi DSS-3 1906 8.6401E-4 0.001683946 7.54726E-4 5.71667E-4 SPO1905 K01679 Citrate cycle (TCA cycle, Krebs cycle) Fumarate hydratase class II (FumC) (PDB:1KQ7)
Ruegeria pomeroyi DSS-3 1907 2.19071E-4 8.07111E-5 1.64054E-4 7.00227E-5 SPO1906 nan
Ruegeria pomeroyi DSS-3 1908 2.63679E-4 5.70941E-5 5.27358E-5 1.3093E-4 SPO1907 K09985 nan SspB-like protein, predicted to bind SsrA peptide (SspB2)
Ruegeria pomeroyi DSS-3 1909 SPO1908 K07240 nan Chromate transport protein ChrA (ChrA)
Ruegeria pomeroyi DSS-3 1910 SPO1909 K06893 nan Ketosteroid isomerase-related protein (YesE) (PDB:1Z1S)
Ruegeria pomeroyi DSS-3 1911 SPO_SptmRNA1 nan
Ruegeria pomeroyi DSS-3 1912 SPO1911 nan
Ruegeria pomeroyi DSS-3 1913 SPO1912 K05799 nan DNA-binding transcriptional regulator, FadR family (FadR) (PDB:1E2X)
Ruegeria pomeroyi DSS-3 1914 1.50873E-5 9.89054E-5 9.80677E-6 3.39465E-5 SPO1913 K17486 nan Glycine cleavage system protein T (aminomethyltransferase) (GcvT) (PDB:2GAH) (PUBMED:25433025;25505271)
Ruegeria pomeroyi DSS-3 1915 1.68082E-4 3.69534E-4 2.04694E-4 1.42565E-4 SPO1914 K19745 nan NADPH:quinone reductase or related Zn-dependent oxidoreductase (Qor) (PDB:2VCY)
Ruegeria pomeroyi DSS-3 1916 SPO1915 K06996 nan Lactoylglutathione lyase-related enzyme, vicinal oxygen chelate (VOC) family (VOC) (PDB:3OXH) (PUBMED:31710815)
Ruegeria pomeroyi DSS-3 1917 0.002698668 0.001706497 0.004135259 0.002233597 SPO1916 nan Selenocysteine lyase/Cysteine desulfurase (CsdA) (PDB:4LW2)
Ruegeria pomeroyi DSS-3 1918 1.14174E-6 SPO1917 K01669 nan Deoxyribodipyrimidine photolyase (PhrB) (PDB:1TEZ)
Ruegeria pomeroyi DSS-3 1919 5.02961E-5 3.33059E-4 1.96653E-4 6.61553E-5 SPO1918 K00574 nan Cyclopropane fatty-acyl-phospholipid synthase and related methyltransferases (Cfa) (PDB:5Z9O)
Ruegeria pomeroyi DSS-3 1920 SPO1919 nan
Ruegeria pomeroyi DSS-3 1921 1.1028E-4 6.14477E-4 1.05099E-4 1.5E-4 SPO1920 K01515 nan 8-oxo-dGTP pyrophosphatase MutT and related house-cleaning NTP pyrophosphohydrolases, NUDIX family (MutT) (PDB:4V14)
Ruegeria pomeroyi DSS-3 1922 0.005380038 0.011333894 0.006532675 0.006437952 SPO1921 K01738 Cysteine biosynthesis, serine => cysteine Cysteine synthase (CysK) (PDB:1FCJ)
Ruegeria pomeroyi DSS-3 1923 1.95942E-4 8.30566E-4 1.58426E-4 2.71651E-4 SPO1922 K05802 nan Small-conductance mechanosensitive channel MscK (MscK)
Ruegeria pomeroyi DSS-3 1924 4.17605E-4 1.69194E-4 9.53436E-5 2.7459E-4 SPO1923 nan Ser-tRNA(Ala) deacylase AlaX (editing enzyme) (AlaX) (PDB:2E1B)
Ruegeria pomeroyi DSS-3 1925 SPO_tRNA-Ser-2 nan
Ruegeria pomeroyi DSS-3 1926 1.70793E-4 8.84927E-4 1.89979E-4 7.61176E-5 SPO1925 nan
Ruegeria pomeroyi DSS-3 1927 2.9963E-4 7.45214E-4 2.9005E-4 3.1528E-4 SPO1926 K07317 nan Type II restriction/modification system, endonuclease and methylase domains (YeeA) (PDB:5HR4)
Ruegeria pomeroyi DSS-3 1928 SPO3898 K07733 nan DNA-binding transcriptional regulator AlpA (AlpA)
Ruegeria pomeroyi DSS-3 1929 SPO1927 nan Integrase/recombinase, includes phage integrase (FimB)
Ruegeria pomeroyi DSS-3 1930 2.18578E-5 SPO1928 K08640 nan Uncharacterized conserved protein YcbK, DUF882 family (YcbK)
Ruegeria pomeroyi DSS-3 1931 1.76924E-4 3.32414E-4 7.84054E-5 2.2124E-4 SPO1929 K21470 nan Murein L,D-transpeptidase YcbB/YkuD (YcbB) (PDB:6NTW) (PUBMED:18456808)
Ruegeria pomeroyi DSS-3 1932 4.91689E-5 1.14693E-4 1.13971E-4 6.95929E-5 SPO1930 K02536 KDO2-lipid A biosynthesis, Raetz pathway, LpxL-LpxM type UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase (LpxD) (PDB:6P83)
Ruegeria pomeroyi DSS-3 1933 SPO1931 K02078 Aurachin biosynthesis, anthranilate => aurachin A Acyl carrier protein (AcpP) (PDB:1ACP)
Ruegeria pomeroyi DSS-3 1934 1.01776E-4 3.39774E-4 7.55916E-5 9.51727E-5 SPO1932 K14660 nan 3-oxoacyl-(acyl-carrier-protein) synthase (FabB) (PDB:2UV8) (PUBMED:21652641)
Ruegeria pomeroyi DSS-3 1935 0.002512984 0.003661078 0.003201092 0.003900641 SPO1933 nan Invasion protein IalB, involved in pathogenesis (IalB) (PDB:3DTD)
Ruegeria pomeroyi DSS-3 1936 5.23685E-4 5.22147E-4 4.5818E-4 3.948E-4 SPO1934 K06915 nan Archaeal DNA helicase HerA or a related bacterial ATPase, contains HAS-barrel and ATPase domains (HerA) (PDB:4D2I)
Ruegeria pomeroyi DSS-3 1937 5.06156E-6 SPO1935 K01998 nan ABC-type branched-chain amino acid transport system, permease component (LivM)
Ruegeria pomeroyi DSS-3 1938 1.47101E-5 SPO1936 K01997 nan Branched-chain amino acid ABC-type transport system, permease component (LivH)
Ruegeria pomeroyi DSS-3 1939 2.48723E-5 4.11436E-4 5.57139E-5 9.41828E-5 SPO1937 K01996 nan ABC-type branched-chain amino acid transport system, ATPase component LivF (LivF) (PDB:1JI0) (PUBMED:26527648;32250026)
Ruegeria pomeroyi DSS-3 1940 1.85533E-5 5.19306E-5 2.31917E-5 3.80344E-5 SPO1938 K01995 nan ABC-type branched-chain amino acid transport system, ATPase component LivG (LivG) (PDB:1G9X) (PUBMED:29514851)
Ruegeria pomeroyi DSS-3 1941 0.017585482 0.07140364 0.027779413 0.009988508 SPO1939 K01999 nan ABC-type branched-chain amino acid transport system, periplasmic component (LivK) (PDB:1USG)
Ruegeria pomeroyi DSS-3 1942 3.71067E-5 5.51528E-5 6.82763E-5 1.08846E-5 SPO1940 K21430 nan Glucose/arabinose dehydrogenase, beta-propeller fold (YliI) (PDB:1C9U)
Ruegeria pomeroyi DSS-3 1943 1.56305E-4 1.5655E-4 9.74442E-5 1.37999E-4 SPO1941 K21826 nan Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH domain (GlxA)
Ruegeria pomeroyi DSS-3 1944 0.003983614 0.011689978 0.003628911 0.00429265 SPO1942 K01626 Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase, class II (AroG2) (PDB:6BMC)
Ruegeria pomeroyi DSS-3 1945 SPO1943 nan Uncharacterized conserved protein
Ruegeria pomeroyi DSS-3 1946 5.27843E-4 4.99869E-4 3.72922E-4 2.39338E-4 SPO1944 nan Uncharacterized stationary-phase protein YicC, UPF0701 family (YicC) (PUBMED:1925027)
Ruegeria pomeroyi DSS-3 1947 1.50831E-4 2.04906E-4 2.86191E-4 1.26337E-4 SPO1945 K00942 Guanine ribonucleotide biosynthesis, IMP => GDP,GTP Guanylate kinase (Gmk) (PDB:1EX6)
Ruegeria pomeroyi DSS-3 1948 4.54493E-4 4.58019E-4 1.31508E-4 2.71433E-4 SPO1946 K01726 nan Carbonic anhydrase or acetyltransferase, isoleucine patch superfamily (PaaY) (PDB:6IVE)
Ruegeria pomeroyi DSS-3 1949 1.67279E-4 1.53616E-5 1.0205E-4 9.04777E-5 SPO1947 K07636 nan Sensor histidine kinase WalK (WalK) (PDB:4I5S)
Ruegeria pomeroyi DSS-3 1950 3.25381E-5 6.05665E-5 8.14773E-5 7.8832E-5 SPO1948 K02040 nan ABC-type phosphate transport system, periplasmic component (PstS) (PDB:2Q9T)
Ruegeria pomeroyi DSS-3 1951 4.47396E-6 SPO1949 K02037 nan ABC-type phosphate transport system, permease component (PstC)
Ruegeria pomeroyi DSS-3 1952 1.95264E-5 6.89015E-6 7.93259E-6 1.58652E-5 SPO1950 K02038 nan ABC-type phosphate transport system, permease component (PstA)
Ruegeria pomeroyi DSS-3 1953 2.24664E-4 3.92993E-4 3.28841E-4 2.53621E-4 SPO1951 K02036 nan ABC-type phosphate transport system, ATPase component (PstB)
Ruegeria pomeroyi DSS-3 1954 2.65162E-4 2.5094E-4 3.59048E-4 4.12473E-4 SPO1952 K02039 nan Phosphate uptake regulator PhoU (PhoU) (PDB:1T8B)
Ruegeria pomeroyi DSS-3 1955 1.07917E-4 4.88327E-5 3.03767E-5 1.68671E-4 SPO1953 K07657 nan DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain (OmpR) (PDB:1XHF)
Ruegeria pomeroyi DSS-3 1956 SPO1954 K03566 nan DNA-binding transcriptional regulator, LysR family (LysR) (PDB:2FYI)
Ruegeria pomeroyi DSS-3 1957 7.13394E-5 5.64552E-4 8.88379E-5 1.18451E-4 SPO1955 K00252 Lysine degradation, lysine => saccharopine => acetoacetyl-CoA Acyl-CoA dehydrogenase related to the alkylation response protein AidB (CaiA) (PDB:1BUC)
Ruegeria pomeroyi DSS-3 1958 SPO1956 K03321 nan Sulfate permease or related transporter, MFS superfamily (SUL1) (PDB:3NY7)
Ruegeria pomeroyi DSS-3 1959 8.58092E-6 2.71729E-5 2.68154E-5 SPO1957 nan Short-chain dehydrogenase (YqjQ)
Ruegeria pomeroyi DSS-3 1960 SPO1958 K10805 nan Acyl-CoA thioesterase (TesB) (PDB:1C8U)
Ruegeria pomeroyi DSS-3 1961 2.56508E-5 3.96985E-5 2.63516E-5 2.63516E-5 SPO1959 K01907 nan Acyl-coenzyme A synthetase/AMP-(fatty) acid ligase (Acs) (PDB:4B2O) (PUBMED:14638756)
Ruegeria pomeroyi DSS-3 1962 7.28229E-5 1.82511E-5 3.47413E-5 1.67025E-5 SPO1960 nan CubicO group peptidase, beta-lactamase class C family (AmpC) (PDB:1BLS)
Ruegeria pomeroyi DSS-3 1963 SPO1961 K20329 nan DNA-binding transcriptional regulator, IclR family (IclR) (PDB:1MKM)
Ruegeria pomeroyi DSS-3 1964 1.54958E-4 2.189E-4 7.38661E-5 9.68824E-5 SPO1962 nan Predicted  kinase, aminoglycoside phosphotransferase (APT) family (YcbJ)
Ruegeria pomeroyi DSS-3 1965 1.017E-5 SPO1963 nan Broad specificity phosphatase PhoE (PhoE) (PDB:1EBB)
Ruegeria pomeroyi DSS-3 1966 6.59674E-6 1.13538E-5 6.04701E-5 1.48427E-5 SPO1964 K00459 nan NAD(P)H-dependent flavin oxidoreductase YrpB, nitropropane dioxygenase family (YrpB)
Ruegeria pomeroyi DSS-3 1967 2.31046E-5 1.29454E-4 3.96925E-5 1.30334E-5 SPO1965 K00059 Fatty acid biosynthesis, elongation NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family (FabG) (PDB:6L1H)
Ruegeria pomeroyi DSS-3 1968 2.01904E-5 2.57442E-5 4.71109E-5 2.75935E-5 SPO1966 nan NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family (FabG) (PDB:6L1H)
Ruegeria pomeroyi DSS-3 1969 9.62174E-6 4.57535E-5 1.67764E-5 2.66448E-5 SPO1967 nan Acyl-CoA dehydrogenase related to the alkylation response protein AidB (CaiA) (PDB:1BUC)
Ruegeria pomeroyi DSS-3 1970 9.27183E-6 7.61344E-5 1.80682E-5 2.80533E-5 SPO1968 nan Acyl-CoA dehydrogenase related to the alkylation response protein AidB (CaiA) (PDB:1BUC)
Ruegeria pomeroyi DSS-3 1971 4.16045E-6 2.83728E-5 7.76616E-6 4.16045E-6 SPO1969 K00344 nan NADPH:quinone reductase or related Zn-dependent oxidoreductase (Qor) (PDB:2VCY)
Ruegeria pomeroyi DSS-3 1972 1.63746E-4 3.73319E-5 4.71924E-4 3.47645E-4 SPO1970 K15634 Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate Broad specificity phosphatase PhoE (PhoE) (PDB:1EBB)
Ruegeria pomeroyi DSS-3 1973 8.01721E-6 3.1935E-5 1.00215E-5 SPO1971 K15866 Phenylacetate degradation, phenylaxetate => acetyl-CoA/succinyl-CoA Enoyl-CoA hydratase/carnithine racemase (CaiD) (PDB:1DCI)
Ruegeria pomeroyi DSS-3 1974 SPO1972 nan Acyl-CoA dehydratase PaaZ (MaoC) (PDB:5ZY8)
Ruegeria pomeroyi DSS-3 1975 3.31719E-5 3.82009E-5 1.47431E-5 1.47431E-5 SPO1973 K03786 Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate 3-dehydroquinate dehydratase (AroQ) (PDB:1D0I)
Ruegeria pomeroyi DSS-3 1976 5.51384E-5 6.62101E-5 3.52886E-5 8.60157E-5 SPO1974 nan DNA-binding transcriptional regulator, CsgD family (CsgD)
Ruegeria pomeroyi DSS-3 1977 0.031124854 0.09102119 0.04715201 0.03242294 SPO1975 K02357 nan Translation elongation factor EF-Ts (Tsf) (PDB:1EFU)
Ruegeria pomeroyi DSS-3 1978 0.009258045 0.014099191 0.016862143 0.011646012 SPO1976 K02967 nan Ribosomal protein S2 (RpsB) (PDB:4V4H)
Ruegeria pomeroyi DSS-3 1979 6.25845E-6 1.55738E-5 3.91153E-6 1.56461E-6 SPO1977 nan
Ruegeria pomeroyi DSS-3 1980 2.25304E-5 1.20008E-4 2.53467E-5 1.40815E-6 SPO1978 nan
Ruegeria pomeroyi DSS-3 1981 1.9826E-6 2.89727E-6 7.93038E-6 1.28869E-5 SPO1979 K22617 nan 1-acyl-sn-glycerol-3-phosphate acyltransferase (PlsC) (PDB:1IUQ)
Ruegeria pomeroyi DSS-3 1982 5.68871E-5 5.31612E-5 8.97064E-5 6.49097E-5 SPO1980 K22310 nan Putative hemolysin
Ruegeria pomeroyi DSS-3 1983 SPO1981 nan
Ruegeria pomeroyi DSS-3 1984 2.78065E-5 SPO1982 nan
Ruegeria pomeroyi DSS-3 1985 0.001066461 1.82722E-4 4.26215E-4 4.01252E-4 SPO1983 K13588 nan Histidine phosphotransfer protein ChpT, HPt domain (HPt) (PDB:4FMT) (PUBMED:23932593)
Ruegeria pomeroyi DSS-3 1986 0.001575762 0.005553266 0.001775722 0.001375801 SPO1984 K00147 Proline biosynthesis, glutamate => proline Gamma-glutamyl phosphate reductase (ProA) (PDB:4GHK)
Ruegeria pomeroyi DSS-3 1987 1.38041E-4 3.26762E-4 2.09424E-4 2.05444E-4 SPO1985 K00931 Proline biosynthesis, glutamate => proline Glutamate 5-kinase (ProB) (PDB:2W21)
Ruegeria pomeroyi DSS-3 1988 1.54058E-4 2.87966E-4 2.32017E-4 3.16629E-4 SPO1986 K03979 nan GTPase involved in cell partioning and DNA repair (Obg) (PDB:1LNZ)
Ruegeria pomeroyi DSS-3 1989 4.93644E-5 6.87985E-4 1.39866E-4 2.26254E-5 SPO1987 K03790 nan Protein N-acetyltransferase, RimJ/RimL family (RimL) (PDB:1S7F)
Ruegeria pomeroyi DSS-3 1990 SPO1988 K11249 nan Threonine/homoserine/homoserine lactone efflux protein (RhtB)
Ruegeria pomeroyi DSS-3 1991 0.004050966 0.001629829 0.006180834 0.003620056 SPO1989 K02899 nan Ribosomal protein L27 (RpmA) (PDB:1VS6)
Ruegeria pomeroyi DSS-3 1992 0.01409654 0.00555419 0.025240414 0.008256653 SPO1990 K02888 nan Ribosomal protein L21 (RplU) (PDB:1VS6)!!!Predicted 5' DNA nuclease, flap endonuclease-1-like, helix-3-turn-helix (H3TH) domain (H3TH)
Ruegeria pomeroyi DSS-3 1993 2.97131E-5 1.13561E-4 2.59562E-5 4.43988E-5 SPO1991 nan
Ruegeria pomeroyi DSS-3 1994 4.42886E-5 1.98926E-5 3.34625E-5 1.27945E-5 SPO1992 K09924 nan
Ruegeria pomeroyi DSS-3 1995 SPO_tRNA-Ser-3 nan
Ruegeria pomeroyi DSS-3 1996 1.26248E-5 5.02681E-6 5.02681E-6 SPO1994 K12537 nan Multidrug resistance efflux pump EmrA (EmrA) (PDB:4TKO)
Ruegeria pomeroyi DSS-3 1997 1.14222E-5 3.24541E-5 2.61949E-5 2.01031E-5 SPO1995 K12536 nan ABC-type protease/lipase transport system, ATPase and permease components (ArpD) (PDB:5L22)
Ruegeria pomeroyi DSS-3 1998 7.67092E-4 4.53613E-4 8.16928E-4 4.27357E-4 SPO1996 nan
Ruegeria pomeroyi DSS-3 1999 SPO1997 nan
Ruegeria pomeroyi DSS-3 2000 SPO1998 nan
Ruegeria pomeroyi DSS-3 2001 SPO1999 nan
Ruegeria pomeroyi DSS-3 2002 4.22445E-5 5.84227E-5 1.17346E-5 SPO2000 K09022 nan Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family (RidA) (PDB:1J7H) (PUBMED:22094463;32205462)
Ruegeria pomeroyi DSS-3 2003 SPO2001 K19746 D-Arginine racemization, D-arginine => L-arginine Glycine/D-amino acid oxidase (deaminating) (DadA) (PDB:3AWI)
Ruegeria pomeroyi DSS-3 2004 SPO2002 nan Acetoin utilization deacetylase AcuC or a related deacetylase (AcuC) (PDB:1C3P)
Ruegeria pomeroyi DSS-3 2005 SPO2003 K00657 GABA biosynthesis, eukaryotes, putrescine => GABA Ribosomal protein S18 acetylase RimI and related acetyltransferases (RimI) (PDB:1GHE)
Ruegeria pomeroyi DSS-3 2006 SPO2004 K18013 nan Uncharacterized conserved protein, DUF849 family (PDB:3C6C)
Ruegeria pomeroyi DSS-3 2007 SPO2005 nan Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (BioA) (PDB:1MLY)
Ruegeria pomeroyi DSS-3 2008 SPO2006 K02052 nan ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component (PotA) (PDB:1Z47)
Ruegeria pomeroyi DSS-3 2009 6.95436E-5 3.20838E-5 5.49657E-5 3.48912E-5 SPO2007 nan Spermidine/putrescine-binding periplasmic protein (PotD) (PDB:1POT)
Ruegeria pomeroyi DSS-3 2010 SPO2008 K11070 nan ABC-type spermidine/putrescine transport system, permease component II (PotC)
Ruegeria pomeroyi DSS-3 2011 SPO2009 K11071 nan ABC-type spermidine/putrescine transport system, permease component I (PotB)
Ruegeria pomeroyi DSS-3 2012 1.53616E-5 SPO2010 K21699 nan DNA-binding transcriptional regulator, LysR family (LysR) (PDB:2FYI)
Ruegeria pomeroyi DSS-3 2013 SPO_tRNA-Thr-3 nan
Ruegeria pomeroyi DSS-3 2014 SPO_tRNA-Arg-4 nan
Ruegeria pomeroyi DSS-3 2015 1.23411E-6 1.10277E-6 SPO2013 K00797 Methionine salvage pathway Spermidine synthase (polyamine aminopropyltransferase) (SpeE) (PDB:6BQ2)
Ruegeria pomeroyi DSS-3 2016 6.18165E-4 7.01365E-4 0.001111884 4.10306E-4 SPO2014 K11717 nan Selenocysteine lyase/Cysteine desulfurase (CsdA) (PDB:4LW2)
Ruegeria pomeroyi DSS-3 2017 SPO2015 nan
Ruegeria pomeroyi DSS-3 2018 4.93644E-6 SPO2016 nan
Ruegeria pomeroyi DSS-3 2019 5.1695E-4 0.001367709 7.4513E-4 6.43287E-4 SPO2017 K09015 nan Fe-S cluster assembly scaffold protein SufB (SufB) (PDB:1VH4)
Ruegeria pomeroyi DSS-3 2020 0.002689007 0.005938211 0.006176622 0.003222141 SPO2018 K09013 nan Fe-S cluster assembly ATPase SufC (SufC) (PDB:2D3W)
Ruegeria pomeroyi DSS-3 2021 1.82731E-4 1.44556E-4 2.1796E-4 2.02814E-4 SPO2019 K13665 nan Glycosyltransferase involved in cell wall bisynthesis (RfaB) (PDB:2IV7)!!!Glycosyltransferase, GT2 family (WcaE) (PDB:2Z86)!!!Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB (EnvC)
Ruegeria pomeroyi DSS-3 2022 2.57706E-4 1.18613E-4 2.87919E-4 1.14931E-4 SPO2020 nan Glycosyltransferase involved in cell wall bisynthesis (RfaB) (PDB:2IV7)
Ruegeria pomeroyi DSS-3 2023 6.60071E-5 5.64945E-6 8.97695E-5 4.75251E-5 SPO2021 nan Uncharacterized pentameric protein YbjQ, UPF0145 family (YbjQ) (PDB:1VR4) (PUBMED:23935051)
Ruegeria pomeroyi DSS-3 2024 4.37157E-5 7.37701E-5 7.37701E-5 SPO2022 nan Glycosyltransferase, GT2 family (WcaE) (PDB:2Z86)!!!Predicted O-linked N-acetylglucosamine transferase, SPINDLY family (Spy) (PDB:2JLB)
Ruegeria pomeroyi DSS-3 2025 8.51987E-4 0.003353876 0.001027449 6.53009E-4 SPO2023 K09014 nan Fe-S cluster assembly scaffold protein SufB (SufB) (PDB:1VH4)
Ruegeria pomeroyi DSS-3 2026 1.03169E-5 9.55608E-6 4.07387E-5 3.49189E-5 SPO2024 K04487 nan Cysteine desulfurase/Cysteine sulfinate desulfinase IscS or related enzyme, NifS family (NifS) (PDB:4IXO) (PUBMED:22773787;25825430)
Ruegeria pomeroyi DSS-3 2027 2.11362E-4 3.95438E-5 5.98557E-4 1.21638E-4 SPO2025 K13643 nan DNA-binding transcriptional regulator, IscR family (IscR) (PDB:1XD7)
Ruegeria pomeroyi DSS-3 2028 7.71887E-5 4.85462E-5 4.21797E-5 4.04925E-5 SPO2026 K07018 nan Alpha/beta superfamily hydrolase (PDB:2FUK)
Ruegeria pomeroyi DSS-3 2029 2.78065E-5 6.25647E-5 6.95163E-6 SPO2027 nan
Ruegeria pomeroyi DSS-3 2030 5.69097E-6 1.42274E-6 SPO2028 K07023 nan 5'-deoxynucleotidase YfbR and related HD superfamily hydrolases (YfbR) (PDB:2PAQ)
Ruegeria pomeroyi DSS-3 2031 2.08022E-6 1.23288E-5 9.7077E-6 1.8722E-5 SPO2029 K18802 nan Predicted glutamine amidotransferase YafJ (YafJ) (PDB:1TE5)
Ruegeria pomeroyi DSS-3 2032 SPO2030 K03297 nan Multidrug transporter EmrE and related cation transporters (EmrE) (PDB:2I68)
Ruegeria pomeroyi DSS-3 2033 4.64445E-4 0.003659855 4.67014E-4 5.17763E-4 SPO2031 K06207 nan Predicted membrane GTPase TypA/BipA involved in stress response (TypA) (PDB:5A9V)
Ruegeria pomeroyi DSS-3 2034 7.22604E-5 2.96109E-4 7.11042E-4 8.47855E-5 SPO2032 nan Uncharacterized conserved protein, DUF1330 family
Ruegeria pomeroyi DSS-3 2035 0.011685787 0.039743714 0.012448878 0.011712731 SPO2033 K01872 nan Alanyl-tRNA synthetase (AlaS) (PDB:2ZZE)
Ruegeria pomeroyi DSS-3 2036 0.001843785 0.003223774 0.001297244 0.001376904 SPO2034 K03553 nan RecA/RadA recombinase (RecA) (PDB:1B22)
Ruegeria pomeroyi DSS-3 2037 1.81201E-5 1.58725E-4 6.13297E-5 7.15514E-5 SPO2035 nan
Ruegeria pomeroyi DSS-3 2038 4.46923E-5 5.49179E-5 1.45399E-5 1.64468E-5 SPO2036 K13587 nan Signal transduction histidine kinase (BaeS) (PDB:1JOY)!!!DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains (AtoC) (PDB:1ZY2)
Ruegeria pomeroyi DSS-3 2039 4.56479E-5 4.3275E-5 1.12832E-4 2.34091E-5 SPO2037 K03500 nan 16S rRNA C967 or C1407 C5-methylase, RsmB/RsmF family (RsmB) (PDB:2FRX)
Ruegeria pomeroyi DSS-3 2040 3.04048E-4 5.7294E-5 5.03589E-4 1.9849E-4 SPO2038 K13075 nan Glyoxylase or a related metal-dependent hydrolase, beta-lactamase superfamily II (GloB) (PDB:1QH3) (PUBMED:25670698)
Ruegeria pomeroyi DSS-3 2041 0.007698759 0.007556284 0.008976758 0.007179963 SPO2039 K00088 Guanine ribonucleotide biosynthesis, IMP => GDP,GTP IMP dehydrogenase/GMP reductase (GuaB) (PDB:1B3O)!!!Signal-transduction protein containing cAMP-binding, CBS, and nucleotidyltransferase domains
Ruegeria pomeroyi DSS-3 2042 1.28379E-5 1.94946E-5 2.71023E-5 SPO2040 K18702 nan Crotonobetainyl-CoA:carnitine CoA-transferase CaiB and related acyl-CoA transferases (CaiB) (PDB:1P5H)
Ruegeria pomeroyi DSS-3 2043 2.92788E-4 7.91182E-4 2.53695E-4 3.57222E-4 SPO2041 nan Uncharacterized 2Fe-2S and 4Fe-4S clusters-containing protein, contains DUF4445 domain (PDB:4C1N)
Ruegeria pomeroyi DSS-3 2044 1.92694E-6 6.48702E-6 SPO2042 K07755 nan Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG (UbiE) (PDB:4OBW)
Ruegeria pomeroyi DSS-3 2045 SPO_tRNA-Gly-5 nan
Ruegeria pomeroyi DSS-3 2046 3.55583E-5 1.58037E-5 SPO2044 nan
Ruegeria pomeroyi DSS-3 2047 2.06324E-4 0.007537788 0.001448515 6.24237E-4 SPO2045 K20034 nan O-succinylbenzoic acid-CoA ligase MenE or related acyl-CoA synthetase (AMP-forming) (MenE/FadK) (PDB:5EY9) (PUBMED:25151136;27455459)
Ruegeria pomeroyi DSS-3 2048 4.94159E-4 0.00680199 0.003652702 0.00238385 SPO2046 K01810 Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate Glucose-6-phosphate isomerase (Pgi) (PDB:1B0Z)
Ruegeria pomeroyi DSS-3 2049 3.57089E-5 2.22447E-4 2.45448E-4 1.02612E-4 SPO2047 K01057 Pentose phosphate pathway (Pentose phosphate cycle) 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase (NagB) (PDB:2RI0) (PUBMED:24163345)
Ruegeria pomeroyi DSS-3 2050 2.23069E-4 0.006151686 0.001569028 7.96027E-4 SPO2048 K00036 Pentose phosphate pathway (Pentose phosphate cycle) Glucose-6-phosphate 1-dehydrogenase (Zwf) (PDB:5B7W) (PUBMED:18950999)
Ruegeria pomeroyi DSS-3 2051 SPO2049 nan Radical SAM superfamily maturase, SkfB/NifB/PqqE family (SkfB) (PDB:6Q2P) (PUBMED:23282011)
Ruegeria pomeroyi DSS-3 2052 SPO2050 nan Usg protein (tryptophan operon, function unknown) (Usg)
Ruegeria pomeroyi DSS-3 2053 0.001723711 0.006166046 0.001811728 0.001911889 SPO2051 K02469 nan DNA gyrase/topoisomerase IV, subunit A (GyrA) (PDB:1SUU)
Ruegeria pomeroyi DSS-3 2054 SPO2052 nan
Ruegeria pomeroyi DSS-3 2055 9.45621E-4 0.002436824 0.001093117 8.23956E-4 SPO2053 K01299 nan Zn-dependent carboxypeptidase, M32 family (YpwA) (PDB:1K9X)
Ruegeria pomeroyi DSS-3 2056 7.00927E-5 3.80212E-5 2.40868E-5 7.80412E-5 SPO2054 K02259 Cytochrome c oxidase Heme A synthase (CtaA) (PDB:6A2J)
Ruegeria pomeroyi DSS-3 2057 2.87876E-5 9.39193E-5 9.22679E-5 1.40247E-5 SPO2055 K02533 nan tRNA C32,U32 (ribose-2'-O)-methylase TrmJ or a related methyltransferase (TrmJ) (PDB:3ONP)
Ruegeria pomeroyi DSS-3 2058 7.94443E-4 4.75797E-4 6.29157E-4 4.78088E-4 SPO2056 nan Thiamine monophosphate synthase (ThiE) (PDB:1G4T) (PUBMED:19060138)
Ruegeria pomeroyi DSS-3 2059 SPO2057 nan Hydrogenase/urease accessory protein HupE (HupE)
Ruegeria pomeroyi DSS-3 2060 3.12278E-5 1.6105E-6 2.94331E-5 2.94331E-5 SPO2058 K10094 nan Uncharacterized protein, contains GH25 family domain
Ruegeria pomeroyi DSS-3 2061 1.22584E-4 2.10479E-4 1.3468E-4 1.47756E-4 SPO2059 nan Glutathione S-transferase (GstA) (PDB:1A0F)
Ruegeria pomeroyi DSS-3 2062 2.68118E-5 4.96124E-5 6.00954E-5 1.78745E-5 SPO2060 K16328 nan Sugar or nucleoside kinase, ribokinase family (RbsK) (PDB:2QCV)
Ruegeria pomeroyi DSS-3 2063 8.12929E-4 3.2871E-4 6.09998E-4 6.92496E-4 SPO2061 K16329 nan Pseudouridine-5'-phosphate glycosidase (pseudoU degradation) (PsuG) (PDB:1VKM) (PUBMED:18591240)
Ruegeria pomeroyi DSS-3 2064 1.38521E-4 4.78525E-5 5.02597E-5 9.07127E-5 SPO2062 nan Uncharacterized membrane protein (PUBMED:19363116)
Ruegeria pomeroyi DSS-3 2065 2.94203E-5 5.23028E-5 2.1248E-5 SPO2063 K22441 nan Ribosomal protein S18 acetylase RimI and related acetyltransferases (RimI) (PDB:1GHE)
Ruegeria pomeroyi DSS-3 2066 4.88337E-4 4.3217E-4 3.33564E-4 4.28562E-4 SPO2064 K07001 nan Predicted acylesterase/phospholipase RssA, containd patatin domain (RssA) (PDB:5FQU)
Ruegeria pomeroyi DSS-3 2067 0.001780023 4.55139E-4 0.00479659 0.002651872 SPO2065 K00019 Ketone body biosynthesis, acetyl-CoA => acetoacetate/3-hydroxybutyrate/acetone NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family (FabG) (PDB:6L1H)
Ruegeria pomeroyi DSS-3 2068 2.53222E-4 8.44704E-4 6.45255E-4 4.30069E-4 SPO2066 K02035 nan ABC-type oligopeptide transport system, periplasmic component (OppA) (PDB:1B05)
Ruegeria pomeroyi DSS-3 2069 SPO2067 nan
Ruegeria pomeroyi DSS-3 2070 1.32652E-5 7.49912E-5 7.1632E-5 7.95915E-6 SPO2068 nan Transcriptional regulator, contains XRE-family HTH domain (HipB) (PDB:1ADR)
Ruegeria pomeroyi DSS-3 2071 3.31683E-5 4.1487E-5 8.33736E-5 7.24988E-5 SPO2069 nan O-succinylbenzoic acid-CoA ligase MenE or related acyl-CoA synthetase (AMP-forming) (MenE/FadK) (PDB:5EY9) (PUBMED:25151136;27455459)
Ruegeria pomeroyi DSS-3 2072 2.54436E-4 7.81108E-5 1.14202E-4 2.26725E-4 SPO2070 K07396 nan Predicted dithiol-disulfide isomerase, DsbA/YjbH family (virulence, stress resistance) (FrnE) (PDB:6GHB)
Ruegeria pomeroyi DSS-3 2073 SPO2071 K07552 nan Predicted arabinose efflux permease AraJ, MFS family (AraJ) (PDB:4LDS)
Ruegeria pomeroyi DSS-3 2074 1.36555E-4 1.70054E-4 1.76815E-4 9.6624E-5 SPO2072 nan Type IV pilus assembly protein PilF/PilW (PilF) (PDB:2VQ2) (PUBMED:16403447)
Ruegeria pomeroyi DSS-3 2075 2.3774E-6 7.80579E-6 2.13966E-5 2.13966E-5 SPO2073 nan
Ruegeria pomeroyi DSS-3 2076 1.08201E-4 6.67023E-4 6.04321E-5 2.19287E-4 SPO2074 K03723 nan Transcription-repair coupling factor (superfamily II helicase) (Mfd) (PDB:2EYQ)
Ruegeria pomeroyi DSS-3 2077 2.05153E-5 1.13278E-5 2.84058E-5 SPO2075 nan
Ruegeria pomeroyi DSS-3 2078 6.29405E-4 5.72826E-4 5.6958E-4 5.10582E-4 SPO2076 K01698 Siroheme biosynthesis, glutamyl-tRNA => siroheme Delta-aminolevulinic acid dehydratase, porphobilinogen synthase (HemB) (PDB:1I8J)
Ruegeria pomeroyi DSS-3 2079 0.003261834 0.003515306 0.004097645 0.002610045 SPO2077 nan Lipid-binding SYLF domain, Ysc84/FYVE family (SYLF) (PUBMED:21624956)
Ruegeria pomeroyi DSS-3 2080 2.17133E-4 8.51068E-4 1.74152E-4 2.63009E-4 SPO2078 K01434 nan Acyl-homoserine lactone (AHL) acylase PvdQ (PvdQ) (PDB:4HST)
Ruegeria pomeroyi DSS-3 2081 SPO2079 nan NhaP-type Na+/H+ or K+/H+ antiporter (NhaP) (PDB:4CZB)
Ruegeria pomeroyi DSS-3 2082 1.17219E-4 8.71394E-5 7.38284E-5 3.8857E-5 SPO2080 K03665 nan 50S ribosomal subunit-associated GTPase HflX (HflX) (PDB:2QTF) (PUBMED:22905870)
Ruegeria pomeroyi DSS-3 2083 0.001101834 4.10485E-4 0.001214218 0.0012791 SPO2081 K03666 nan sRNA-binding regulator protein Hfq (Hfq) (PDB:1HK9)
Ruegeria pomeroyi DSS-3 2084 9.67243E-6 2.4836E-5 6.09005E-6 6.98564E-6 SPO2082 K03498 nan Trk-type K+ transport system, membrane component (TrkG) (PDB:3PJZ)
Ruegeria pomeroyi DSS-3 2085 1.73867E-4 1.028E-4 4.83629E-5 1.15512E-4 SPO2083 K03499 nan Trk/Ktr K+ transport system regulatory component TrkA/KtrA/KtrC, RCK domain (TrkA) (PDB:4XTT) (PUBMED:23815639;25957408;31868587;32095817)
Ruegeria pomeroyi DSS-3 2086 1.44521E-4 3.07983E-5 1.72354E-4 7.92188E-5 SPO2084 nan
Ruegeria pomeroyi DSS-3 2087 3.78583E-4 0.001967745 0.001206246 8.05852E-4 SPO2085 K13599 nan DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains (AtoC) (PDB:1ZY2)
Ruegeria pomeroyi DSS-3 2088 1.24846E-4 2.96156E-4 2.02544E-4 6.30245E-5 SPO2086 K13598 nan Signal transduction histidine kinase NtrY involved in nitrogen fixation and metabolism regulation (NtrY)
Ruegeria pomeroyi DSS-3 2089 4.44631E-5 1.19804E-4 4.60653E-5 7.21021E-5 SPO2087 nan DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains (AtoC) (PDB:1ZY2)
Ruegeria pomeroyi DSS-3 2090 1.52975E-6 SPO2088 K07708 nan Signal transduction histidine kinase NtrB, nitrogen specific (NtrB) (PUBMED:23893111)
Ruegeria pomeroyi DSS-3 2091 SPO2089 K05540 nan tRNA-dihydrouridine synthase (DusA) (PDB:1VHN)
Ruegeria pomeroyi DSS-3 2092 3.38447E-5 1.04786E-4 3.44833E-5 3.15033E-5 SPO2090 K12506 C5 isoprenoid biosynthesis, non-mevalonate pathway 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (IspF) (PDB:1GX1)!!!2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (IspD) (PDB:1H3M)
Ruegeria pomeroyi DSS-3 2093 SPO2091 K01095 nan Phosphatidylglycerophosphatase A (PgpA) (PDB:1RFZ)
Ruegeria pomeroyi DSS-3 2094 5.40544E-4 2.74495E-4 2.69409E-4 3.54606E-4 SPO2092 K03743 nan Nicotinamide mononucleotide (NMN) deamidase PncC (PncC) (PDB:2A9S)
Ruegeria pomeroyi DSS-3 2095 SPO2093 K03320 nan Ammonia channel protein AmtB (AmtB) (PDB:1U77)
Ruegeria pomeroyi DSS-3 2096 1.29219E-5 SPO2094 nan Ribosomal protein S18 acetylase RimI and related acetyltransferases (RimI) (PDB:1GHE)
Ruegeria pomeroyi DSS-3 2097 1.84121E-4 2.88962E-4 1.06608E-4 1.33366E-4 SPO2095 nan 2-methylcitrate dehydratase PrpD (PrpD) (PDB:1SZQ)
Ruegeria pomeroyi DSS-3 2098 3.08528E-6 SPO2096 K18588 nan Ribosome association toxin PasT (RatA) of the RatAB toxin-antitoxin module (PasT) (PDB:1T17) (PUBMED:21323758)
Ruegeria pomeroyi DSS-3 2099 7.6275E-6 1.38274E-6 1.2204E-5 3.81374E-5 SPO2097 K00760 nan Hypoxanthine-guanine phosphoribosyltransferase (HptA) (PDB:1G9S)
Ruegeria pomeroyi DSS-3 2100 3.03414E-6 1.94056E-6 SPO2098 nan DNA-binding transcriptional regulator, LysR family (LysR) (PDB:2FYI)
Ruegeria pomeroyi DSS-3 2101 1.39033E-5 2.82009E-5 7.91328E-4 3.47582E-5 SPO2099 nan Cytochrome c556 (CytC556) (PDB:1E83)
Ruegeria pomeroyi DSS-3 2102 SPO2100 nan Cytochrome c, mono- and diheme variants (CccA) (PDB:1A2S)
Ruegeria pomeroyi DSS-3 2103 2.96416E-4 1.18659E-5 1.22978E-4 3.79732E-4 SPO2101 nan Metal-dependent amidase/aminoacylase/carboxypeptidase (AbgB) (PDB:3RAM) (PUBMED:17307853)
Ruegeria pomeroyi DSS-3 2104 0.001759632 7.62713E-4 8.27823E-4 0.00201018 SPO2102 K03644 Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H Lipoate synthase (LipA) (PDB:4U0O) (PUBMED:27941785)
Ruegeria pomeroyi DSS-3 2105 3.01747E-5 3.02688E-5 3.77184E-5 5.73319E-5 SPO2103 K24157 nan Peroxiredoxin (AHP1) (PDB:1H4O)
Ruegeria pomeroyi DSS-3 2106 SPO2104 nan Uncharacterized conserved protein, cupin superfamily
Ruegeria pomeroyi DSS-3 2107 1.11204E-5 6.84335E-6 6.84335E-6 SPO2105 K04761 nan DNA-binding transcriptional regulator, LysR family (LysR) (PDB:2FYI)
Ruegeria pomeroyi DSS-3 2108 SPO2106 nan
Ruegeria pomeroyi DSS-3 2109 SPO2107 nan
Ruegeria pomeroyi DSS-3 2110 5.34221E-5 6.35502E-5 6.0545E-6 6.62432E-5 SPO2108 K14083 Methanogenesis, methylamine/dimethylamine/trimethylamine => methane Trimethylamine:corrinoid methyltransferase (MttB2)
Ruegeria pomeroyi DSS-3 2111 0.001017939 9.57007E-4 8.94841E-4 8.116E-4 SPO2109 K01951 Guanine ribonucleotide biosynthesis, IMP => GDP,GTP GMP synthase, glutamine amidotransferase domain (GuaA1) (PDB:4WIM)!!!GMP synthase, PP-ATPase domain/subunit (GuaA2) (PDB:4WIM)
Ruegeria pomeroyi DSS-3 2112 SPO2110 K15270 nan Permease of the drug/metabolite transporter (DMT) superfamily (RhaT) (PDB:5I20)
Ruegeria pomeroyi DSS-3 2113 SPO2111 K06076 nan Long-chain fatty acid transport protein (FadL) (PDB:1T16)
Ruegeria pomeroyi DSS-3 2114 SPO2112 nan Permease of the drug/metabolite transporter (DMT) superfamily (RhaT) (PDB:5I20)
Ruegeria pomeroyi DSS-3 2115 8.94429E-5 2.42072E-5 6.61877E-5 5.12805E-5 SPO2113 nan
Ruegeria pomeroyi DSS-3 2116 SPO_tRNA-Asn-1 nan
Ruegeria pomeroyi DSS-3 2117 SPO_tRNA-Leu-3 nan
Ruegeria pomeroyi DSS-3 2118 SPO2116 K03975 nan Uncharacterized membrane protein YqaA, VTT domain (YgaA)
Ruegeria pomeroyi DSS-3 2119 SPO2117 K03611 nan Disulfide bond formation protein DsbB (DsbB) (PDB:2LTQ)
Ruegeria pomeroyi DSS-3 2120 SPO2118 nan DNA-binding transcriptional regulator, Lrp family (Lrp) (PDB:1I1G)
Ruegeria pomeroyi DSS-3 2121 6.10199E-6 SPO2119 K01476 Urea cycle Arginase/agmatinase family enzyme (SpeB) (PDB:1CEV)
Ruegeria pomeroyi DSS-3 2122 SPO2120 nan Uncharacterized conserved protein
Ruegeria pomeroyi DSS-3 2123 2.6373E-5 1.13486E-4 1.39622E-5 2.6373E-5 SPO2121 K01750 nan Ornithine cyclodeaminase/archaeal alanine dehydrogenase, mu-crystallin family (OCDMu) (PDB:2I99)
Ruegeria pomeroyi DSS-3 2124 SPO2122 K06193 nan Uncharacterized Zn-ribbon-containing protein (PhnA) (PDB:2AKK)
Ruegeria pomeroyi DSS-3 2125 SPO2123 K07451 nan 5-methylcytosine-specific restriction endonuclease McrA (McrA)
Ruegeria pomeroyi DSS-3 2126 1.78483E-5 1.09836E-5 5.62908E-5 SPO2124 K06181 nan Pseudouridylate synthase RsuA, specific for 16S rRNA U516  and 23S rRNA U2605 (RsuA) (PDB:1KSK)
Ruegeria pomeroyi DSS-3 2127 SPO2125 nan L-amino acid N-acyltransferase MnaT (MnaT) (PDB:3DR6) (PUBMED:27941785)
Ruegeria pomeroyi DSS-3 2128 1.80161E-4 7.40655E-5 2.34416E-4 2.20334E-4 SPO2126 K06999 nan Predicted esterase (YpfH)
Ruegeria pomeroyi DSS-3 2129 SPO2127 K01247 nan 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase (AlkA) (PDB:1DIZ)
Ruegeria pomeroyi DSS-3 2130 SPO2128 nan Predicted arabinose efflux permease AraJ, MFS family (AraJ) (PDB:4LDS)
Ruegeria pomeroyi DSS-3 2131 2.55079E-6 3.06273E-5 SPO2129 nan Phytoene/squalene synthetase (ERG9) (PDB:3WEK)
Ruegeria pomeroyi DSS-3 2132 3.88161E-4 0.001775906 4.45871E-4 7.01617E-4 SPO2130 K01649 Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate Isopropylmalate/homocitrate/citramalate synthases (LeuA) (PDB:4JN6)
Ruegeria pomeroyi DSS-3 2133 1.09245E-4 2.14257E-4 3.88165E-4 3.27933E-4 SPO2131 K01883 nan Cysteinyl-tRNA synthetase (CysS) (PDB:1LI5)
Ruegeria pomeroyi DSS-3 2134 2.78065E-5 2.36356E-5 SPO2132 K12252 nan Aspartate/methionine/tyrosine aminotransferase (AspB) (PDB:2O0R)
Ruegeria pomeroyi DSS-3 2135 0.026483998 0.12784603 0.009019286 0.06272261 SPO2133 K16079 nan Opacity protein LomR and related surface antigens (LomR) (PDB:1Q9F)
Ruegeria pomeroyi DSS-3 2136 1.06844E-6 6.65935E-6 SPO2134 K14083 Methanogenesis, methylamine/dimethylamine/trimethylamine => methane Trimethylamine:corrinoid methyltransferase (MttB2)
Ruegeria pomeroyi DSS-3 2137 SPO2135 nan
Ruegeria pomeroyi DSS-3 2138 7.82605E-5 0.011317024 0.001976863 7.82603E-4 SPO2136 K00525 Pyrimidine deoxyribonucleotide biosynthesis, CDP => dCTP Ribonucleotide reductase alpha subunit (NrdA) (PDB:1R1R)
Ruegeria pomeroyi DSS-3 2139 SPO2137 nan
Ruegeria pomeroyi DSS-3 2140 SPO_tRNA-Pro-4 nan
Ruegeria pomeroyi DSS-3 2141 1.41724E-5 8.85775E-6 1.41724E-5 SPO2139 K09005 nan Uncharacterized conserved membrane protein, UPF0127 family (PDB:3M7A)
Ruegeria pomeroyi DSS-3 2142 1.25527E-5 5.48954E-5 3.92271E-5 1.7783E-5 SPO2140 K03704 nan Cold shock protein, CspA family (CspC) (PDB:1C9O)
Ruegeria pomeroyi DSS-3 2143 8.42894E-4 3.00903E-4 2.8142E-4 5.95627E-4 SPO2141 K00275 Pyridoxal-P biosynthesis, erythrose-4P => pyridoxal-P Pyridoxine/pyridoxamine 5'-phosphate oxidase (PdxH) (PDB:1CI0)
Ruegeria pomeroyi DSS-3 2144 0.00265778 0.002065799 0.003181686 0.00218647 SPO2142 K00208 Fatty acid biosynthesis, elongation Enoyl-[acyl-carrier-protein] reductase FabI (FabI) (PDB:1C14)
Ruegeria pomeroyi DSS-3 2145 0.002095551 6.999E-4 0.001466618 0.001663595 SPO2143 K00769 nan Hypoxanthine phosphoribosyltransferase (Hpt1) (PDB:2JKZ)
Ruegeria pomeroyi DSS-3 2146 5.99041E-4 5.74519E-4 7.87484E-4 7.50966E-4 SPO2144 nan Aspartate/methionine/tyrosine aminotransferase (AspB) (PDB:2O0R)
Ruegeria pomeroyi DSS-3 2147 0.001812112 0.0095911 0.001731016 0.00183805 SPO2145 K03770 nan Peptidyl-prolyl isomerase, parvulin family (SurA) (PDB:2ZR5)
Ruegeria pomeroyi DSS-3 2148 9.6352E-4 0.001639468 9.69888E-4 9.69525E-4 SPO2146 K01657 Tryptophan biosynthesis, chorismate => tryptophan Anthranilate/para-aminobenzoate synthases component I (TrpE) (PDB:1I1Q)
Ruegeria pomeroyi DSS-3 2149 SPO2147 K09975 nan Various environmental stresses-induced protein Ves (function unknown) (Ves) (PDB:1YLL) (PUBMED:14499931)
Ruegeria pomeroyi DSS-3 2150 4.16736E-4 0.001290567 7.95415E-4 6.64495E-4 SPO2148 K09798 nan Uncharacterized conserved protein YibQ, putative polysaccharide deacetylase 2 family (YibQ) (PDB:2NLY)
Ruegeria pomeroyi DSS-3 2151 4.55278E-5 4.86358E-5 7.30343E-5 6.63949E-5 SPO2149 K01658 Tryptophan biosynthesis, chorismate => tryptophan Anthranilate/para-aminobenzoate synthase component II (glutamine amidotransferase) (PabA) (PDB:1I1Q)
Ruegeria pomeroyi DSS-3 2152 2.1465E-4 1.06063E-4 5.29199E-4 2.90519E-4 SPO2150 K00766 Tryptophan biosynthesis, chorismate => tryptophan Anthranilate phosphoribosyltransferase, glycosyltransferase domain (TrpD) (PDB:1KGZ)
Ruegeria pomeroyi DSS-3 2153 0.002656399 0.002300663 0.00400426 0.002475373 SPO2151 K01609 Tryptophan biosynthesis, chorismate => tryptophan Indole-3-glycerol phosphate synthase (TrpC) (PDB:6BMA)
Ruegeria pomeroyi DSS-3 2154 2.67593E-4 9.83504E-5 1.8889E-4 3.32306E-4 SPO2152 K03637 Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor Molybdenum cofactor biosynthesis enzyme MoaC (MoaC) (PDB:1EKR) (PUBMED:32239579)
Ruegeria pomeroyi DSS-3 2155 5.11061E-4 2.16349E-4 4.00943E-4 4.08943E-4 SPO2153 K03750 Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor Molybdopterin Mo-transferase (molybdopterin biosynthesis) (MoeA) (PDB:2NQU) (PUBMED:18801996;32239579)
Ruegeria pomeroyi DSS-3 2156 4.39819E-4 4.43622E-4 7.16389E-4 3.18571E-4 SPO2154 K01356 nan SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase) (LexA) (PDB:1AY9)
Ruegeria pomeroyi DSS-3 2157 SPO2155 K02238 nan DNA uptake channel protein ComEC, N-terminal domain (ComEC)
Ruegeria pomeroyi DSS-3 2158 0.001448049 0.004533917 0.001523932 0.001621329 SPO2156 K01885 Heme biosynthesis, plants and bacteria, glutamate => heme Glutamyl- or glutaminyl-tRNA synthetase (GlnS) (PDB:1EUQ)
Ruegeria pomeroyi DSS-3 2159 0.007575101 0.015358915 0.00898861 0.006936304 SPO2157 K01647 Citrate cycle (TCA cycle, Krebs cycle) Citrate synthase (GltA) (PDB:3TQG) (PUBMED:25211225)
Ruegeria pomeroyi DSS-3 2160 SPO2158 nan
Ruegeria pomeroyi DSS-3 2161 SPO2159 nan DNA repair photolyase (SplB)
Ruegeria pomeroyi DSS-3 2162 5.83503E-4 1.89586E-4 1.34139E-4 2.56441E-4 SPO2160 nan Methanogenic corrinoid protein MtbC1 (MtbC1) (PDB:1Y80)
Ruegeria pomeroyi DSS-3 2163 5.714E-5 3.01573E-5 4.07387E-5 SPO2161 nan Ca2+-binding protein, RTX toxin-related (PDB:1AF0) (PUBMED:15135544)
Ruegeria pomeroyi DSS-3 2164 2.24664E-5 2.70748E-5 2.8291E-5 5.49179E-5 SPO2162 nan
Ruegeria pomeroyi DSS-3 2165 SPO2163 K00799 nan Glutathione S-transferase (GstA) (PDB:1A0F)
Ruegeria pomeroyi DSS-3 2166 SPO2164 nan Predicted DNA-binding transcriptional regulator YobV, contains HTH and WYL domains (YobV)
Ruegeria pomeroyi DSS-3 2167 2.62475E-5 5.49179E-5 8.88378E-5 6.46093E-5 SPO2165 K02426 nan Sulfur transfer protein SufE, Fe-S cluster assembly (SufE) (PDB:1MZG)
Ruegeria pomeroyi DSS-3 2168 6.70693E-4 3.39377E-4 5.98626E-4 7.24874E-4 SPO2166 nan
Ruegeria pomeroyi DSS-3 2169 7.22491E-4 0.002715983 0.001335622 6.73754E-4 SPO2167 K03684 nan Ribonuclease D (Rnd) (PDB:5C0Y) (PUBMED:18821773)
Ruegeria pomeroyi DSS-3 2170 1.80286E-5 7.67372E-5 4.43781E-5 SPO2168 K11175 Inosine monophosphate biosynthesis, PRPP + glutamine => IMP Folate-dependent phosphoribosylglycinamide formyltransferase PurN (PurN) (PDB:1C2T) (PUBMED:25013077)
Ruegeria pomeroyi DSS-3 2171 9.50806E-4 0.001060527 8.25872E-4 7.10145E-4 SPO2169 K01933 Inosine monophosphate biosynthesis, PRPP + glutamine => IMP Phosphoribosylaminoimidazole (AIR) synthetase (PurM) (PDB:1CLI)
Ruegeria pomeroyi DSS-3 2172 SPO2170 K13075 nan Glyoxylase or a related metal-dependent hydrolase, beta-lactamase superfamily II (GloB) (PDB:1QH3) (PUBMED:25670698)
Ruegeria pomeroyi DSS-3 2173 7.15543E-6 7.15543E-6 1.78886E-6 SPO2171 K03566 nan DNA-binding transcriptional regulator, LysR family (LysR) (PDB:2FYI)
Ruegeria pomeroyi DSS-3 2174 SPO_tRNA-Met-2 nan
Ruegeria pomeroyi DSS-3 2175 4.98121E-6 2.4408E-5 1.2453E-6 SPO2173 K07638 nan Signal transduction histidine kinase (BaeS) (PDB:1JOY)
Ruegeria pomeroyi DSS-3 2176 3.33108E-5 1.40708E-5 1.02033E-5 3.00098E-5 SPO2174 K16639 nan Glyoxylase or a related metal-dependent hydrolase, beta-lactamase superfamily II (GloB) (PDB:1QH3) (PUBMED:25670698)
Ruegeria pomeroyi DSS-3 2177 SPO_tRNA-Asn-2 nan
Ruegeria pomeroyi DSS-3 2178 SPO2176 K11744 nan Predicted PurR-regulated permease PerM (PerM)
Ruegeria pomeroyi DSS-3 2179 SPO2177 K04768 nan Acetoin utilization deacetylase AcuC or a related deacetylase (AcuC) (PDB:1C3P)
Ruegeria pomeroyi DSS-3 2180 3.04875E-5 SPO2178 K06131 nan Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthase (Cls) (PDB:1BYR)
Ruegeria pomeroyi DSS-3 2181 SPO2179 nan
Ruegeria pomeroyi DSS-3 2182 1.11467E-4 6.49377E-5 2.17497E-5 1.63122E-4 SPO2180 nan
Ruegeria pomeroyi DSS-3 2183 2.0961E-6 2.0961E-6 SPO2181 nan ABC-type lipoprotein export system, ATPase component (LolD) (PDB:5GKO)
Ruegeria pomeroyi DSS-3 2184 SPO2182 K02004 nan ABC-type antimicrobial peptide transport system, permease component (SalY)
Ruegeria pomeroyi DSS-3 2185 SPO2183 nan Predicted lipocalin, contains AttH/CrtC domain (CrtC) (PDB:2ICH) (PUBMED:20944205)
Ruegeria pomeroyi DSS-3 2186 4.78571E-5 2.03175E-5 6.01483E-5 1.9875E-5 SPO2184 nan Catalase (KatE) (PDB:6RJR)
Ruegeria pomeroyi DSS-3 2187 1.38242E-4 2.66383E-4 7.70113E-5 SPO2185 K14061 nan Nucleotide-binding universal stress protein,  UspA family (UspA) (PDB:1JMV)
Ruegeria pomeroyi DSS-3 2188 3.15984E-5 2.61478E-4 5.11892E-5 4.08672E-5 SPO2186 nan TRAP-type uncharacterized transport system, fused permease components
Ruegeria pomeroyi DSS-3 2189 0.022008386 0.022137446 0.026339147 0.011310117 SPO2187 K07080 nan TRAP-type uncharacterized transport system, periplasmic component (Imp) (PDB:1US4)
Ruegeria pomeroyi DSS-3 2190 SPO2188 nan L-amino acid N-acyltransferase MnaT (MnaT) (PDB:3DR6) (PUBMED:27941785)
Ruegeria pomeroyi DSS-3 2191 3.5661E-6 8.91525E-6 SPO2189 K03719 nan DNA-binding transcriptional regulator, Lrp family (Lrp) (PDB:1I1G)
Ruegeria pomeroyi DSS-3 2192 9.42796E-6 2.35699E-6 SPO2190 K05836 nan DNA-binding transcriptional regulator, GntR family (MngR) (PDB:2WV0)
Ruegeria pomeroyi DSS-3 2193 1.26248E-6 3.1562E-6 SPO2191 K01468 Histidine degradation, histidine => N-formiminoglutamate => glutamate Imidazolonepropionase or related amidohydrolase (HutI) (PDB:3OOQ)
Ruegeria pomeroyi DSS-3 2194 4.29046E-6 9.81422E-6 1.07262E-6 1.07262E-6 SPO2192 K01745 Histidine degradation, histidine => N-formiminoglutamate => glutamate Histidine ammonia-lyase (HutH) (PDB:1B8F)
Ruegeria pomeroyi DSS-3 2195 2.02649E-6 6.10199E-6 8.10596E-6 SPO2192a K01458 Histidine degradation, histidine => N-formiminoglutamate => glutamate N-formylglutamate amidohydrolase (HutG)
Ruegeria pomeroyi DSS-3 2196 2.54976E-5 3.92329E-4 3.9554E-5 9.25105E-5 SPO2193 K01712 Histidine degradation, histidine => N-formiminoglutamate => glutamate Urocanate hydratase (HutU) (PDB:1UWK)
Ruegeria pomeroyi DSS-3 2197 SPO2194 K05603 Histidine degradation, histidine => N-formiminoglutamate => glutamate Cytosine/adenosine deaminase or related metal-dependent hydrolase (SsnA) (PDB:3O7U)
Ruegeria pomeroyi DSS-3 2198 SPO2195 nan Metal-dependent amidase/aminoacylase/carboxypeptidase (AbgB) (PDB:3RAM) (PUBMED:17307853)
Ruegeria pomeroyi DSS-3 2199 1.24499E-5 3.84041E-6 2.83582E-5 1.65999E-5 SPO2196 K01751 nan Threonine deaminase (IlvA) (PDB:3IAU)
Ruegeria pomeroyi DSS-3 2200 1.51614E-5 1.7667E-5 2.10575E-5 3.70611E-5 SPO2197 K09781 nan Membrane protein MutK/YedI, may be involved in DNA repair (MutK) (PUBMED:9922251;10411738;31497001)
Ruegeria pomeroyi DSS-3 2201 0.001745664 1.64919E-6 3.62821E-5 SPO2198 K00134 Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase (GapA) (PDB:3ZDF)
Ruegeria pomeroyi DSS-3 2202 SPO2199 nan
Ruegeria pomeroyi DSS-3 2203 0.001334671 4.22877E-5 8.75358E-4 0.001085044 SPO2200 K00954 Coenzyme A biosynthesis, pantothenate => CoA Phosphopantetheine adenylyltransferase (CoaD) (PDB:3F3M)
Ruegeria pomeroyi DSS-3 2204 0.006569171 0.003587585 0.005318899 0.002859035 SPO2201 nan Signal-transduction protein containing cAMP-binding, CBS, and nucleotidyltransferase domains
Ruegeria pomeroyi DSS-3 2205 2.70929E-4 6.52352E-4 2.08078E-4 1.64754E-4 SPO2202 nan DNA-binding transcriptional regulator, LysR family (LysR) (PDB:2FYI)
Ruegeria pomeroyi DSS-3 2206 0.005921007 0.010253855 0.004276772 0.002276689 SPO2203 K00140 Malonate semialdehyde pathway, propanoyl-CoA => acetyl-CoA Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenase (AdhE) (PDB:1A4S)
Ruegeria pomeroyi DSS-3 2207 SPO2204 nan Predicted peroxiredoxin, DsrE/DsrF-like family (PDB:3MC3)
Ruegeria pomeroyi DSS-3 2208 8.05666E-6 1.017E-5 5.08499E-6 SPO2205 nan Lipoprotein-anchoring transpeptidase ErfK/SrfK (ErfK) (PDB:4LZH)
Ruegeria pomeroyi DSS-3 2209 1.23411E-6 SPO2206 nan
Ruegeria pomeroyi DSS-3 2210 SPO2207 nan
Ruegeria pomeroyi DSS-3 2211 4.88593E-5 5.49501E-5 3.97389E-5 1.86317E-4 SPO2208 nan Trans-aconitate methyltransferase (Tam) (PDB:2P35)
Ruegeria pomeroyi DSS-3 2212 3.57538E-6 6.10199E-6 2.28825E-5 8.10421E-6 SPO2209 K06048 nan Gamma-glutamyl:cysteine ligase YbdK, ATP-grasp superfamily (YbdK) (PDB:1R8G) (PUBMED:15211520)
Ruegeria pomeroyi DSS-3 2213 0.005370985 0.006596814 0.00550355 0.004793555 SPO2210 nan
Ruegeria pomeroyi DSS-3 2214 7.08152E-5 6.51927E-5 7.37055E-5 3.56485E-5 SPO2211 K11538 beta-Oxidation Acyl-CoA dehydrogenase related to the alkylation response protein AidB (CaiA) (PDB:1BUC)
Ruegeria pomeroyi DSS-3 2215 1.5781E-6 6.68169E-6 1.02577E-5 1.34139E-5 SPO2212 K01692 beta-Oxidation Enoyl-CoA hydratase/carnithine racemase (CaiD) (PDB:1DCI)
Ruegeria pomeroyi DSS-3 2216 4.02416E-4 0.001426675 9.02042E-4 4.27349E-4 SPO2213 K00020 nan 3-hydroxyisobutyrate dehydrogenase or related beta-hydroxyacid dehydrogenase (MmsB) (PDB:1I36)
Ruegeria pomeroyi DSS-3 2217 6.61127E-4 0.00269988 0.001608109 9.58951E-4 SPO2213a nan Periplasmic regulator RcnB of Ni and Co efflux (RcnB) (PDB:2L1S)
Ruegeria pomeroyi DSS-3 2218 1.76443E-5 2.48497E-6 9.92492E-6 2.75693E-6 SPO2214 nan Arylsulfatase A or related enzyme, AlkP superfamily (AslA) (PDB:1E1Z)
Ruegeria pomeroyi DSS-3 2219 SPO2215 K08234 nan Catechol 2,3-dioxygenase or related enzyme, vicinal oxygen chelate (VOC) family (GloA) (PDB:3R4Q) (PUBMED:11830595)
Ruegeria pomeroyi DSS-3 2220 2.10413E-6 SPO2216 nan Transcriptional regulator, contains XRE-family HTH domain (HipB) (PDB:1ADR)
Ruegeria pomeroyi DSS-3 2221 SPO2217 nan
Ruegeria pomeroyi DSS-3 2222 9.05494E-4 0.005703267 7.94452E-4 9.34151E-4 SPO2218 K03701 nan Excinuclease UvrABC ATPase subunit (UvrA) (PDB:2R6F)
Ruegeria pomeroyi DSS-3 2223 SPO2219 K03972 nan Rhodanese-related sulfurtransferase (PspE) (PDB:1TQ1)
Ruegeria pomeroyi DSS-3 2224 SPO2220 nan 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase (UbiG) (PDB:1BHJ)
Ruegeria pomeroyi DSS-3 2225 1.5552E-5 8.15164E-5 4.34159E-5 3.75839E-5 SPO2221 K07114 nan vWFA (von Willebrand factor type A) domain of Mg and Co chelatases (ChlD)
Ruegeria pomeroyi DSS-3 2226 0.001475327 0.003487322 0.001855057 0.001561136 SPO2222 K00382 Pyruvate oxidation, pyruvate => acetyl-CoA Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex or glutathione oxidoreductase (Lpd) (PDB:6QKG)
Ruegeria pomeroyi DSS-3 2227 2.49627E-4 6.16563E-5 6.42629E-4 1.9074E-4 SPO2223 nan
Ruegeria pomeroyi DSS-3 2228 2.57517E-4 5.6134E-4 3.97419E-4 3.07313E-4 SPO2224 nan Uncharacterized conserved protein, DUF924 family (PDB:2I6H)
Ruegeria pomeroyi DSS-3 2229 SPO2225 nan Predicted arabinose efflux permease AraJ, MFS family (AraJ) (PDB:4LDS)
Ruegeria pomeroyi DSS-3 2230 2.51773E-5 5.59589E-5 2.62263E-5 2.9898E-5 SPO2226 K07568 nan S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) (QueA) (PDB:1VKY)
Ruegeria pomeroyi DSS-3 2231 4.33562E-6 2.17481E-5 1.92694E-6 2.72983E-6 SPO2227 nan Uncharacterized conserved protein YhdP, contains DUF3971 and AsmA2 domains (YhdR)
Ruegeria pomeroyi DSS-3 2232 5.20464E-4 1.44126E-4 8.14795E-4 7.05916E-4 SPO2228 K03564 nan Peroxiredoxin (Bcp) (PDB:5IPH)
Ruegeria pomeroyi DSS-3 2233 7.90185E-6 1.47613E-5 2.8315E-5 2.23886E-5 SPO2229 nan Uncharacterized protein, contains ferritin-like DUF455 domain
Ruegeria pomeroyi DSS-3 2234 2.01661E-4 4.10867E-4 1.88953E-4 1.28915E-4 SPO2230 K19304 nan Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain (NlpD) (PDB:2GU1)!!!Chromosome segregation ATPase Smc (Smc) (PDB:5XG3)
Ruegeria pomeroyi DSS-3 2235 0.042201668 0.04820654 0.021369804 0.008805061 SPO2231 nan Cytoskeletal protein CcmA, bactofilin family (CcmA) (PDB:2N3D)
Ruegeria pomeroyi DSS-3 2236 1.67433E-6 6.6973E-6 SPO2232 nan Uncharacterized conserved protein YurZ, alkylhydroperoxidase/carboxymuconolactone decarboxylase family (YurZ) (PDB:3BEY)
Ruegeria pomeroyi DSS-3 2237 0.002556261 0.008488393 0.006103673 0.002327184 SPO2233 K03768 nan Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family (PpiB) (PDB:4DGD)
Ruegeria pomeroyi DSS-3 2238 0.008711677 0.014535802 0.02580487 0.010779815 SPO2234 K03768 nan Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family (PpiB) (PDB:4DGD)
Ruegeria pomeroyi DSS-3 2239 0.002080809 0.0027273 0.00359266 0.002149801 SPO2235 K00927 Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate 3-phosphoglycerate kinase (Pgk) (PDB:13PK)
Ruegeria pomeroyi DSS-3 2240 SPO2236 nan
Ruegeria pomeroyi DSS-3 2241 SPO2237 nan
Ruegeria pomeroyi DSS-3 2242 SPO2238 K04761 nan DNA-binding transcriptional regulator, LysR family (LysR) (PDB:2FYI)
Ruegeria pomeroyi DSS-3 2243 SPO2239 nan Cell division protein FtsB (FtsB) (PDB:4IFF)
Ruegeria pomeroyi DSS-3 2244 0.00176819 0.003702845 0.002574484 0.001878303 SPO2240 K00161 Pyruvate oxidation, pyruvate => acetyl-CoA TPP-dependent pyruvate or acetoin dehydrogenase subunit alpha (AcoA) (PDB:1DTW)
Ruegeria pomeroyi DSS-3 2245 0.005863891 0.018034033 0.004828148 0.004658648 SPO2241 K00162 Pyruvate oxidation, pyruvate => acetyl-CoA Pyruvate/2-oxoglutarate/acetoin dehydrogenase complex, dehydrogenase (E1) component, beta subunit (AcoB) (PDB:2OZL)!!!Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component (AceF) (PDB:1B5S)
Ruegeria pomeroyi DSS-3 2246 0.003170031 0.013017491 0.004960623 0.003197051 SPO2242 K00627 Pyruvate oxidation, pyruvate => acetyl-CoA Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component (AceF) (PDB:1B5S)
Ruegeria pomeroyi DSS-3 2247 3.87779E-5 8.9496E-5 2.62013E-5 1.57208E-5 SPO2243 nan
Ruegeria pomeroyi DSS-3 2248 SPO2244 nan
Ruegeria pomeroyi DSS-3 2249 5.39734E-6 3.37334E-6 1.34933E-6 SPO2245 K18897 nan Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG (UbiE) (PDB:4OBW)
Ruegeria pomeroyi DSS-3 2250 0.040447645 0.010924826 0.0242554 0.01075346 SPO2246 K01738 Cysteine biosynthesis, serine => cysteine Cysteine synthase (CysK) (PDB:1FCJ)
Ruegeria pomeroyi DSS-3 2251 9.96658E-5 3.9862E-4 1.41702E-4 1.20006E-4 SPO2247 K00640 Cysteine biosynthesis, serine => cysteine Serine acetyltransferase (CysE) (PDB:1T3D)
Ruegeria pomeroyi DSS-3 2252 SPO2248 K06204 nan RNA polymerase-binding transcription factor DksA (DksA) (PDB:1TJL)
Ruegeria pomeroyi DSS-3 2253 SPO2249 nan
Ruegeria pomeroyi DSS-3 2254 SPO2250 nan Phage large terminase packaging protein
Ruegeria pomeroyi DSS-3 2255 SPO2251 nan Cell wall-associated hydrolase, NlpC_P60 family (NlpC) (PDB:2EVR)
Ruegeria pomeroyi DSS-3 2256 SPO2252 nan Uncharacterized conserved protein, DUF2163 domain
Ruegeria pomeroyi DSS-3 2257 SPO2253 nan Uncharacterized conserved protein, DUF2460 domain
Ruegeria pomeroyi DSS-3 2258 SPO2255 nan Phage-related minor tail protein
Ruegeria pomeroyi DSS-3 2259 SPO2256 nan
Ruegeria pomeroyi DSS-3 2260 SPO2257 nan Phage tail protein, TP901-1 family (LmaA)
Ruegeria pomeroyi DSS-3 2261 SPO2258 nan
Ruegeria pomeroyi DSS-3 2262 SPO2259 nan Phage head-tail adaptor (PDB:2Y3D)
Ruegeria pomeroyi DSS-3 2263 SPO2260 nan
Ruegeria pomeroyi DSS-3 2264 1.04372E-4 5.60387E-6 3.50242E-6 SPO2261 nan Predicted phage phi-C31 gp36 major capsid-like protein (gp36)
Ruegeria pomeroyi DSS-3 2265 SPO2262 K06904 nan Phage head maturation protease
Ruegeria pomeroyi DSS-3 2266 SPO2263 nan
Ruegeria pomeroyi DSS-3 2267 SPO2264 nan Phage portal protein BeeE (BeeE)
Ruegeria pomeroyi DSS-3 2268 SPO2266 K06909 nan Phage large terminase packaging protein
Ruegeria pomeroyi DSS-3 2269 SPO2267 nan
Ruegeria pomeroyi DSS-3 2270 SPO2268 nan Predicted Zn-dependent protease, minimal metalloprotease (MMP)-like domain (PDB:3E11)
Ruegeria pomeroyi DSS-3 2271 SPO2269 nan
Ruegeria pomeroyi DSS-3 2272 4.38342E-4 0.001391769 2.35499E-4 6.04955E-4 SPO2270 K07082 nan Endolytic transglycosylase MltG, terminates peptidoglycan polymerization (MltG) (PDB:2R1F) (PUBMED:26507882)
Ruegeria pomeroyi DSS-3 2273 0.005870736 0.013108413 0.008497272 0.004002092 SPO2271 K09458 Fatty acid biosynthesis, elongation 3-oxoacyl-(acyl-carrier-protein) synthase (FabB) (PDB:2UV8) (PUBMED:21652641)
Ruegeria pomeroyi DSS-3 2274 9.8941E-5 7.28398E-5 1.23028E-4 4.15034E-5 SPO2272 K01814 Histidine biosynthesis, PRPP => histidine Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) (PDB:4U28)
Ruegeria pomeroyi DSS-3 2275 3.06804E-5 3.76858E-4 2.24989E-5 1.27835E-4 SPO2273 K03790 nan Protein N-acetyltransferase, RimJ/RimL family (RimL) (PDB:1S7F)
Ruegeria pomeroyi DSS-3 2276 6.41897E-5 SPO2274 K02078 Aurachin biosynthesis, anthranilate => aurachin A Acyl carrier protein (AcpP) (PDB:1ACP)
Ruegeria pomeroyi DSS-3 2277 0.00368174 0.005587387 0.003315247 0.00403852 SPO2275 K00059 Fatty acid biosynthesis, elongation NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family (FabG) (PDB:6L1H)
Ruegeria pomeroyi DSS-3 2278 0.001670419 0.004235758 0.002719492 0.00239503 SPO2276 K00645 Fatty acid biosynthesis, initiation Malonyl CoA-acyl carrier protein transacylase (FabD) (PDB:1YXC)
Ruegeria pomeroyi DSS-3 2279 3.39E-6 SPO2277 K12262 nan Polyisoprenoid-binding periplasmic protein YceI (YceI) (PDB:1WUB) (PUBMED:15741337;20236316)!!!Cytochrome b561 (CybB) (PDB:5OC0)
Ruegeria pomeroyi DSS-3 2280 1.12077E-6 4.22445E-6 4.48309E-6 SPO2278 nan
Ruegeria pomeroyi DSS-3 2281 5.86363E-5 1.06589E-4 4.76718E-5 1.02971E-4 SPO2279 nan Polyisoprenoid-binding periplasmic protein YceI (YceI) (PDB:1WUB) (PUBMED:15741337;20236316)
Ruegeria pomeroyi DSS-3 2282 2.4408E-5 2.27875E-6 SPO2280 nan
Ruegeria pomeroyi DSS-3 2283 0.002518244 0.002648474 0.00589233 0.003171469 SPO2281 K02990 nan Ribosomal protein S6 (RpsF) (PDB:4V4H)
Ruegeria pomeroyi DSS-3 2284 0.00135098 9.75684E-4 0.00215034 0.001803748 SPO2282 K02963 nan Ribosomal protein S18 (RpsR) (PDB:4V4H)
Ruegeria pomeroyi DSS-3 2285 0.012940028 0.051059682 0.032132458 0.019714607 SPO2283 K02939 nan Ribosomal protein L9 (RplI) (PDB:1VS6) (PUBMED:27112601)
Ruegeria pomeroyi DSS-3 2286 5.59673E-5 0.001086836 3.05488E-4 1.73732E-4 SPO2284 nan Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain) (MltE) (PDB:153L)
Ruegeria pomeroyi DSS-3 2287 SPO2285 K22300 nan Transcriptional regulator, contains XRE-family HTH domain (HipB) (PDB:1ADR)
Ruegeria pomeroyi DSS-3 2288 2.00344E-5 9.42796E-6 5.10682E-5 SPO2286 nan DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains (CitB) (PDB:1A04)
Ruegeria pomeroyi DSS-3 2289 1.92021E-5 2.43293E-5 7.42479E-5 4.32047E-5 SPO2287 nan N-acyl-homoserine lactone synthase LasI (autoinducer biosynthesis) (LasI) (PDB:1K4J)
Ruegeria pomeroyi DSS-3 2290 0.02190827 0.02630245 0.037499122 0.03245321 SPO2288 K03545 nan FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) (Tig) (PDB:5OWI)
Ruegeria pomeroyi DSS-3 2291 4.83801E-5 8.04105E-4 1.96135E-5 1.15938E-4 SPO2289 nan
Ruegeria pomeroyi DSS-3 2292 0.004271806 0.008172283 0.002263373 0.002933431 SPO2290 nan Outer membrane porin OmpC/OmpF/PhoE (OmpC) (PDB:1PHO)
Ruegeria pomeroyi DSS-3 2293 SPO_tRNA-Leu-4 nan
Ruegeria pomeroyi DSS-3 2294 SPO2292 nan Ca2+-binding protein, RTX toxin-related (PDB:1AF0) (PUBMED:15135544)
Ruegeria pomeroyi DSS-3 2295 1.23466E-5 2.03542E-5 1.41575E-5 9.87731E-6 SPO2293 K23997 nan NAD(P)H-hydrate repair enzyme Nnr, NAD(P)H-hydrate epimerase domain (Nnr1) (PDB:3RRB)!!!NAD(P)H-hydrate repair enzyme Nnr, NAD(P)H-hydrate dehydratase domain (Nnr2) (PDB:1KYH)
Ruegeria pomeroyi DSS-3 2296 5.71245E-4 4.47459E-4 8.07424E-4 4.00443E-4 SPO2294 K04752 nan Nitrogen regulatory protein PII (GlnK) (PDB:2GW8) (PUBMED:24610711)
Ruegeria pomeroyi DSS-3 2297 0.005228934 0.021718912 0.007465156 0.005937312 SPO2295 K01915 nan Glutamine synthetase (GlnA) (PDB:1F1H)
Ruegeria pomeroyi DSS-3 2298 4.90338E-5 2.1532E-5 1.3468E-4 4.44574E-5 SPO2296 K08305 nan Membrane-bound lytic murein transglycosylase B (MltB) (PDB:1D0K)
Ruegeria pomeroyi DSS-3 2299 2.58542E-5 SPO2297 nan
Ruegeria pomeroyi DSS-3 2300 1.12077E-5 5.16322E-6 8.96619E-6 SPO2298 nan
Ruegeria pomeroyi DSS-3 2301 1.3974E-6 5.58961E-6 SPO2299 nan Xaa-Pro aminopeptidase (PepP) (PDB:1A16)
Ruegeria pomeroyi DSS-3 2302 SPO2300 nan
Ruegeria pomeroyi DSS-3 2303 2.27923E-4 4.52524E-5 1.36168E-4 2.40773E-4 SPO2301 K06889 nan Dipeptidyl aminopeptidase/acylaminoacyl peptidase (DAP2) (PDB:2JBW)!!!Uncharacterized OsmC-related protein (YhfA) (PDB:1LQL)
Ruegeria pomeroyi DSS-3 2304 SPO2302 K03523 nan Biotin transporter BioY (BioY) (PDB:4DVE)
Ruegeria pomeroyi DSS-3 2305 SPO2303 nan
Ruegeria pomeroyi DSS-3 2306 SPO2304 nan
Ruegeria pomeroyi DSS-3 2307 0.005528485 0.005839962 0.004270688 0.004584083 SPO2305 K01756 Inosine monophosphate biosynthesis, PRPP + glutamine => IMP Adenylosuccinate lyase (PurB) (PDB:2HVG)
Ruegeria pomeroyi DSS-3 2308 SPO2306 nan
Ruegeria pomeroyi DSS-3 2309 SPO2307 nan Tetratricopeptide (TPR) repeat (TPR) (PDB:3AS4)
Ruegeria pomeroyi DSS-3 2310 SPO2308 K02410 nan Flagellar motor switch protein FliG (FliG) (PDB:4FHR)
Ruegeria pomeroyi DSS-3 2311 SPO2309 K15270 nan Permease of the drug/metabolite transporter (DMT) superfamily (RhaT) (PDB:5I20)
Ruegeria pomeroyi DSS-3 2312 1.04308E-4 1.67156E-4 1.06389E-4 1.34323E-4 SPO2310 K02517 KDO2-lipid A biosynthesis, Raetz pathway, LpxL-LpxM type Palmitoleoyl-ACP: Kdo2-lipid-IV acyltransferase (lipid A biosynthesis) (LpxP) (PDB:5F2T) (PUBMED:11830595)
Ruegeria pomeroyi DSS-3 2313 7.47182E-6 1.34274E-6 SPO2311 nan Uncharacterized conserved protein, DUF1223 domain (PDB:2AXO)
Ruegeria pomeroyi DSS-3 2314 0.020621484 0.038829606 0.014545068 0.020406244 SPO2312 K01681 Citrate cycle (TCA cycle, Krebs cycle) Aconitase A (AcnA) (PDB:1ACO)
Ruegeria pomeroyi DSS-3 2315 SPO2313 nan Quinol monooxygenase YgiN (YgiN) (PDB:1R6Y) (PUBMED:15613473)
Ruegeria pomeroyi DSS-3 2316 2.28569E-4 1.35263E-4 2.63852E-4 2.87373E-4 SPO2314 K02199 nan Thiol-disulfide isomerase or thioredoxin (TrxA) (PDB:1XFL)
Ruegeria pomeroyi DSS-3 2317 1.38897E-5 3.59079E-5 SPO2315 K02195 nan ABC-type transport system involved in cytochrome c biogenesis, permease component (CcmC)
Ruegeria pomeroyi DSS-3 2318 SPO2316 K02194 nan ABC-type transport system involved in cytochrome c biogenesis, permease component (CcmB)
Ruegeria pomeroyi DSS-3 2319 4.30729E-5 3.80713E-6 1.74983E-5 4.30729E-5 SPO2317 K02193 nan ABC-type transport system involved in cytochrome c biogenesis, ATPase component (CcmA)
Ruegeria pomeroyi DSS-3 2320 3.05099E-5 4.69384E-6 1.87753E-5 SPO2318 K09008 nan Uncharacterized protein, contains Mth938-like domain
Ruegeria pomeroyi DSS-3 2321 SPO2319 K07090 nan Sulfite exporter TauE/SafE/YfcA and related permeases, UPF0721 family (TauE) (PUBMED:21183667;22797525)
Ruegeria pomeroyi DSS-3 2322 1.10859E-4 3.74549E-4 1.69984E-4 2.20581E-4 SPO2320 K03074 nan Preprotein translocase subunit SecF (SecF) (PDB:2FYH) (PUBMED:28830929)
Ruegeria pomeroyi DSS-3 2323 3.9823E-4 0.001264046 3.44603E-4 4.94559E-4 SPO2321 K03072 nan Preprotein translocase subunit SecD (SecD) (PDB:3AQP) (PUBMED:26100040)
Ruegeria pomeroyi DSS-3 2324 0.001400179 0.002250851 0.009128775 0.001473554 SPO2322 K03210 nan Protein translocase subunit YajC (YajC)
Ruegeria pomeroyi DSS-3 2325 5.1039E-6 6.63506E-6 2.55195E-6 SPO2323 nan Small-conductance mechanosensitive channel MscK (MscK)
Ruegeria pomeroyi DSS-3 2326 SPO2324 nan SET domain-containing protein (function unknown) (SET) (PDB:6BX3)
Ruegeria pomeroyi DSS-3 2327 0.0026897 0.008477684 0.004605865 0.003189921 SPO2325 K01875 nan Seryl-tRNA synthetase (SerS) (PDB:1SER)
Ruegeria pomeroyi DSS-3 2328 0.002308684 0.001264841 0.002884522 0.001896355 SPO2326 nan
Ruegeria pomeroyi DSS-3 2329 SPO2327 K10255 nan Fatty acid desaturase (DesA)
Ruegeria pomeroyi DSS-3 2330 3.27026E-4 0.001285513 2.03734E-4 3.02593E-4 SPO2328 K03977 nan Double Era-like domain GTPase Der (Der) (PDB:1MKY)
Ruegeria pomeroyi DSS-3 2331 0.002597939 0.007809265 0.003215389 0.003426015 SPO2329 K17713 nan Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat (PQQ) (PDB:6TJG)
Ruegeria pomeroyi DSS-3 2332 0.001560264 0.002074958 0.001084877 0.002107315 SPO2330 nan TPR-like repeat domain (TPR1)
Ruegeria pomeroyi DSS-3 2333 4.58071E-4 0.001483986 4.6271E-4 6.55472E-4 SPO2331 K18990 nan Multidrug efflux pump subunit AcrA (membrane-fusion protein) (AcrA) (PDB:1T5E)
Ruegeria pomeroyi DSS-3 2334 1.74481E-5 6.42853E-4 1.75935E-5 5.67063E-5 SPO2332 K18989 nan Multidrug efflux pump subunit AcrB (AcrB) (PDB:1IWG)
Ruegeria pomeroyi DSS-3 2335 SPO2333 nan
Ruegeria pomeroyi DSS-3 2336 2.53312E-6 1.01325E-6 4.05298E-6 SPO2334 K07052 nan Membrane protease YdiL, CAAX protease family (YdiL)
Ruegeria pomeroyi DSS-3 2337 1.46538E-4 5.91781E-4 9.76919E-5 1.10918E-4 SPO2335 K24821 nan ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components (ATM1) (PDB:4MRN)
Ruegeria pomeroyi DSS-3 2338 2.4126E-4 9.89081E-4 2.59334E-4 2.16886E-4 SPO2336 nan Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain (XkdP) (PDB:5FIM) (PUBMED:27112601)
Ruegeria pomeroyi DSS-3 2339 1.69556E-4 2.09299E-5 9.90323E-5 1.62053E-4 SPO2337 K22522 nan Nucleotide monophosphate nucleosidase PpnN/YdgH, Lonely Guy (LOG) family (PpnN) (PDB:2PMB) (PUBMED:25728768;27941785;31023582;31420341)
Ruegeria pomeroyi DSS-3 2340 SPO2338 K05786 nan Membrane protein RarD, contains two EamA domains, drug/metabolite transporter family (RarD) (PUBMED:26335199)
Ruegeria pomeroyi DSS-3 2341 2.17067E-5 2.4408E-5 1.23005E-4 9.04446E-5 SPO2339 nan Enoyl-CoA hydratase/carnithine racemase (CaiD) (PDB:1DCI)
Ruegeria pomeroyi DSS-3 2342 0.002497523 0.001726276 0.003901286 0.002500282 SPO2340 K04564 nan Superoxide dismutase (SodA) (PDB:1AP5)
Ruegeria pomeroyi DSS-3 2343 2.19672E-6 4.22445E-6 1.42786E-5 SPO2341 nan Predicted RNA methylase
Ruegeria pomeroyi DSS-3 2344 1.42786E-4 2.34036E-4 1.77202E-4 2.26994E-4 SPO2341a nan
Ruegeria pomeroyi DSS-3 2345 SPO2342 nan
Ruegeria pomeroyi DSS-3 2346 3.68576E-6 SPO2343 nan
Ruegeria pomeroyi DSS-3 2347 1.65046E-4 1.64505E-4 2.12271E-4 8.76349E-5 SPO2344 K00305 nan Sarcosine oxidase gamma subunit (SoxG)
Ruegeria pomeroyi DSS-3 2348 0.001390075 0.004303102 0.001362435 0.001153819 SPO2345 K00302 nan Glycine cleavage system protein T (aminomethyltransferase) (GcvT) (PDB:2GAH) (PUBMED:25433025;25505271)!!!NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase, or a related oxidoreductase (FadH2) (PDB:1VRQ)
Ruegeria pomeroyi DSS-3 2349 2.01534E-5 4.5345E-5 4.5345E-5 SPO2346 K00304 nan Sarcosine oxidase delta subunit (SoxD) (PDB:2GAH)
Ruegeria pomeroyi DSS-3 2350 1.34274E-6 SPO2347 nan Transcriptional regulator of competence genes, TfoX/Sxy family (TfoX) (PDB:2OD0)
Ruegeria pomeroyi DSS-3 2351 6.47342E-4 7.73565E-4 5.39893E-4 5.56696E-4 SPO2348 K00303 nan Glycine/D-amino acid oxidase (deaminating) (DadA) (PDB:3AWI)
Ruegeria pomeroyi DSS-3 2352 6.79458E-4 9.78127E-4 0.001257811 5.22455E-4 SPO2349 K02200 nan Cytochrome c-type biogenesis protein CcmH/NrfG (NrfG)
Ruegeria pomeroyi DSS-3 2353 3.20949E-5 8.6045E-6 3.20949E-5 3.20949E-5 SPO2350 K07447 nan YqgF/RuvX protein, pre-16S rRNA maturation RNase/Holliday junction resolvase/anti-termination factor (YqgF) (PDB:1IV0) (PUBMED:25545592;26817626)
Ruegeria pomeroyi DSS-3 2354 6.41897E-5 7.13219E-6 SPO2351 K06938 nan Predicted Fe-S protein YdhL, DUF1289 family (YdhL)
Ruegeria pomeroyi DSS-3 2355 SPO2352 K01406 nan Ca2+-binding protein, RTX toxin-related (PDB:1AF0) (PUBMED:15135544)
Ruegeria pomeroyi DSS-3 2356 3.36661E-5 3.12141E-5 1.89372E-5 5.26033E-6 SPO2353 nan
Ruegeria pomeroyi DSS-3 2357 SPO2354 K07090 nan Sulfite exporter TauE/SafE/YfcA and related permeases, UPF0721 family (TauE) (PUBMED:21183667;22797525)
Ruegeria pomeroyi DSS-3 2358 5.43033E-5 1.70152E-5 6.62567E-5 5.12296E-5 SPO2355 nan DNA-binding transcriptional regulator, IclR family (IclR) (PDB:1MKM)
Ruegeria pomeroyi DSS-3 2359 SPO2356 K11690 nan TRAP-type C4-dicarboxylate transport system, large permease component (DctQ)
Ruegeria pomeroyi DSS-3 2360 SPO2357 K21394 nan TRAP-type C4-dicarboxylate transport system, small permease component YiaM (DctM)
Ruegeria pomeroyi DSS-3 2361 3.05205E-5 1.60735E-5 1.33946E-6 SPO2358 K21395 nan TRAP-type C4-dicarboxylate transport system, periplasmic component (DctP) (PDB:2CEX)
Ruegeria pomeroyi DSS-3 2362 SPO2359 K00108 Betaine biosynthesis, choline => betaine Choline dehydrogenase or related flavoprotein (BetA) (PDB:1B4V)
Ruegeria pomeroyi DSS-3 2363 6.84572E-6 3.12141E-5 7.60636E-7 6.84572E-6 SPO2361 nan K+-sensing histidine kinase KdpD (KdpD) (PDB:2KSF)
Ruegeria pomeroyi DSS-3 2364 8.24595E-6 6.59674E-6 SPO2362 K09969 nan ABC-type amino acid transport/signal transduction system, periplasmic component/domain (HisJ) (PDB:1GGG)
Ruegeria pomeroyi DSS-3 2365 SPO2363 K01079 Serine biosynthesis, glycerate-3P => serine Phosphoserine phosphatase (SerB) (PDB:3N28)
Ruegeria pomeroyi DSS-3 2366 SPO2364 K09969 nan ABC-type amino acid transport/signal transduction system, periplasmic component/domain (HisJ) (PDB:1GGG)
Ruegeria pomeroyi DSS-3 2367 SPO2365 K09970 nan ABC-type amino acid transport system, permease component (BatB)
Ruegeria pomeroyi DSS-3 2368 SPO2366 K09971 nan ABC-type amino acid transport system, permease component (HisM) (PDB:4YMS)
Ruegeria pomeroyi DSS-3 2369 SPO2367 K09972 nan ABC-type polar amino acid transport system, ATPase component (GlnQ) (PDB:4YMS)
Ruegeria pomeroyi DSS-3 2370 SPO2368 K03324 nan Na+/phosphate symporter (NptA)
Ruegeria pomeroyi DSS-3 2371 2.24664E-5 3.22999E-5 1.99701E-5 SPO2369 nan DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains (CitB) (PDB:1A04)
Ruegeria pomeroyi DSS-3 2372 4.16045E-6 1.76687E-4 1.97621E-5 SPO2370 K03310 nan Na+/alanine symporter (AlsT) (PDB:6CSE)
Ruegeria pomeroyi DSS-3 2373 2.76497E-4 6.05756E-4 7.28425E-4 9.78862E-5 SPO2371 nan Nucleotide-binding universal stress protein,  UspA family (UspA) (PDB:1JMV)
Ruegeria pomeroyi DSS-3 2374 SPO2372 K03719 nan DNA-binding transcriptional regulator, Lrp family (Lrp) (PDB:1I1G)
Ruegeria pomeroyi DSS-3 2375 1.59182E-5 SPO2373 nan Catechol 2,3-dioxygenase or related enzyme, vicinal oxygen chelate (VOC) family (GloA) (PDB:3R4Q) (PUBMED:11830595)
Ruegeria pomeroyi DSS-3 2376 2.14723E-4 9.49152E-5 1.62306E-4 1.81995E-4 SPO2374 K05539 nan tRNA-dihydrouridine synthase (DusA) (PDB:1VHN)
Ruegeria pomeroyi DSS-3 2377 SPO2376 K06929 nan Predicted CoA-binding protein (YccU) (PDB:1IUK)
Ruegeria pomeroyi DSS-3 2378 SPO2377 K02639 nan Ferredoxin (Fdx) (PDB:1KRH)
Ruegeria pomeroyi DSS-3 2379 6.11556E-6 SPO2378 K17285 nan Uncharacterized secreted protein, contains LVIVD repeats, choice-of-anchor domain
Ruegeria pomeroyi DSS-3 2380 SPO2380 K00249 beta-Oxidation Acyl-CoA dehydrogenase related to the alkylation response protein AidB (CaiA) (PDB:1BUC)
Ruegeria pomeroyi DSS-3 2381 SPO2381 K19338 nan DNA-binding transcriptional regulator, LysR family (LysR) (PDB:2FYI)
Ruegeria pomeroyi DSS-3 2382 SPO2382 K07795 nan Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC (TctC) (PDB:2DVZ)
Ruegeria pomeroyi DSS-3 2383 SPO2383 K07794 nan
Ruegeria pomeroyi DSS-3 2384 SPO2384 K07793 nan TctA family transporter (PUBMED:14499931)
Ruegeria pomeroyi DSS-3 2385 SPO2385 nan Acetolactate synthase large subunit or other thiamine pyrophosphate-requiring enzyme (IlvB) (PDB:1BFD)
Ruegeria pomeroyi DSS-3 2386 SPO2386 nan 5-hydroxyisourate hydrolase (purine catabolism), transthyretin-related family (HiuH) (PDB:2IGL)
Ruegeria pomeroyi DSS-3 2387 SPO2387 nan FAD/FMN-containing lactate dehydrogenase/glycolate oxidase (GlcD) (PDB:1AHU)
Ruegeria pomeroyi DSS-3 2388 SPO2388 K05834 nan Threonine/homoserine/homoserine lactone efflux protein (RhtB)
Ruegeria pomeroyi DSS-3 2389 7.51508E-5 5.14601E-4 6.31074E-5 8.33403E-5 SPO2389 K08351 nan Anaerobic selenocysteine-containing dehydrogenase (BisC) (PDB:1EU1)
Ruegeria pomeroyi DSS-3 2390 SPO2390 nan Site-specific recombinase XerD (XerD) (PDB:1A0P)
Ruegeria pomeroyi DSS-3 2391 SPO2392 nan Transposase and inactivated derivatives, IS30 family (Tra8)!!!Site-specific recombinase XerD (XerD) (PDB:1A0P)
Ruegeria pomeroyi DSS-3 2392 1.46448E-5 SPO2393 K09386 nan Carbon monoxide dehydrogenase subunit CoxG (CoxG) (PDB:2NS9)
Ruegeria pomeroyi DSS-3 2393 SPO2394 K07402 nan Molybdoenzyme maturation factor PaoD (Mo cofactor insertion), XdhC/CoxF family (XdhC) (PDB:2WE7) (PUBMED:24498065)
Ruegeria pomeroyi DSS-3 2394 SPO2395 K07161 nan Uncharacterized protein CoxE, contains von Willebrand factor type A (vWA) domain (CoxE)
Ruegeria pomeroyi DSS-3 2395 SPO2396 nan MoxR-like ATPase (MoxR) (PDB:2R44)
Ruegeria pomeroyi DSS-3 2396 1.96863E-5 2.36048E-4 2.60221E-5 1.21738E-4 SPO2397 K03520 nan Aldehyde, CO or xanthine dehydrogenase, Mo-binding subunit (CoxL) (PDB:1DGJ) (PUBMED:10095793)
Ruegeria pomeroyi DSS-3 2397 3.01379E-5 5.25058E-5 3.79514E-5 9.04133E-5 SPO2398 K03518 nan Aldehyde, CO, or xanthine dehydrogenase, Fe-S subunit, CoxS/CutS family (CutS) (PDB:1FFU) (PUBMED:21175741)
Ruegeria pomeroyi DSS-3 2398 7.73491E-6 7.33803E-5 5.02769E-5 6.96142E-5 SPO2399 K03519 nan Aldehyde, CO, or xanthine dehydrogenase, FAD-binding subunit (CutB) (PDB:5Y6Q)
Ruegeria pomeroyi DSS-3 2399 9.57016E-6 3.97529E-5 2.50296E-5 SPO2400 nan DNA-binding response regulator, LytR/AlgR family (LytT) (PDB:3BS1)!!!MHYT domain, NO-binding membrane sensor (MHYT)
Ruegeria pomeroyi DSS-3 2400 5.04296E-7 SPO2401 K01406 nan Ca2+-binding protein, RTX toxin-related (PDB:1AF0) (PUBMED:15135544)
Ruegeria pomeroyi DSS-3 2401 SPO2403 nan Transposase and inactivated derivatives, IS30 family (Tra8)!!!Site-specific recombinase XerD (XerD) (PDB:1A0P)
Ruegeria pomeroyi DSS-3 2402 SPO2405 nan Site-specific recombinase XerD (XerD) (PDB:1A0P)
Ruegeria pomeroyi DSS-3 2403 SPO2406 K07499 nan Transposase!!!CRISPR-associated protein Csa3, CARF domain (Csa3) (PDB:2WTE) (PUBMED:21093452)
Ruegeria pomeroyi DSS-3 2404 SPO2407 K07494 nan Transposase!!!CRISPR-associated protein Csa3, CARF domain (Csa3) (PDB:2WTE) (PUBMED:21093452)
Ruegeria pomeroyi DSS-3 2405 SPO2408 nan Site-specific DNA recombinase SpoIVCA/DNA invertase PinE (SpoIVCA) (PDB:1GDT)
Ruegeria pomeroyi DSS-3 2406 2.15364E-6 2.95712E-5 3.58941E-5 2.4408E-5 SPO2409 nan NADP-dependent 3-hydroxy acid dehydrogenase YdfG (YdfG) (PDB:3P19)
Ruegeria pomeroyi DSS-3 2407 4.12116E-5 0.001938446 4.95773E-4 8.33491E-5 SPO2410 K22186 nan Dihydroxyacid dehydratase/phosphogluconate dehydratase (IlvD) (PDB:2GP4)
Ruegeria pomeroyi DSS-3 2408 SPO2411 nan
Ruegeria pomeroyi DSS-3 2409 5.94349E-5 SPO2412 K10218 nan RNA degradosome component RraA (regulator of RNase E activity) (RraA) (PDB:1J3L) (PUBMED:20471400)
Ruegeria pomeroyi DSS-3 2410 4.49399E-5 8.78686E-6 2.19672E-6 SPO2413 K21883 nan NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family (FabG) (PDB:6L1H)
Ruegeria pomeroyi DSS-3 2411 SPO2414 K18983 nan L-alanine-DL-glutamate epimerase or related enzyme of enolase superfamily (RspA) (PDB:1BKH)
Ruegeria pomeroyi DSS-3 2412 4.73988E-6 4.51628E-6 1.80651E-6 SPO2415 K00477 nan Ectoine hydroxylase-related dioxygenase, phytanoyl-CoA dioxygenase (PhyH) family (PhyH) (PDB:2A1X)
Ruegeria pomeroyi DSS-3 2413 SPO2416 K00020 nan 3-hydroxyisobutyrate dehydrogenase or related beta-hydroxyacid dehydrogenase (MmsB) (PDB:1I36)
Ruegeria pomeroyi DSS-3 2414 2.48497E-6 1.23004E-5 4.34134E-6 SPO2417 K00046 Fatty acid biosynthesis, elongation NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family (FabG) (PDB:6L1H)
Ruegeria pomeroyi DSS-3 2415 SPO2418 nan Threonine/homoserine/homoserine lactone efflux protein (RhtB)
Ruegeria pomeroyi DSS-3 2416 1.86405E-5 9.53738E-6 4.73183E-5 2.81998E-5 SPO2419 nan Fumarylacetoacetate (FAA) hydrolase family protein (PDB:2Q18)
Ruegeria pomeroyi DSS-3 2417 1.14412E-5 1.80651E-6 SPO2420 K00874 Semi-phosphorylative Entner-Doudoroff pathway, gluconate => glycerate-3P Sugar or nucleoside kinase, ribokinase family (RbsK) (PDB:2QCV)
Ruegeria pomeroyi DSS-3 2418 2.13191E-5 4.6469E-5 5.11657E-5 1.93293E-5 SPO2421 K22025 nan Nucleoside-diphosphate-sugar epimerase (WcaG) (PDB:2X4G)
Ruegeria pomeroyi DSS-3 2419 2.19321E-5 6.4268E-5 9.7086E-5 1.93002E-5 SPO2422 K15919 Photorespiration Lactate dehydrogenase or related 2-hydroxyacid dehydrogenase (LdhA) (PDB:1DXY)
Ruegeria pomeroyi DSS-3 2420 SPO2423 nan
Ruegeria pomeroyi DSS-3 2421 1.41622E-5 4.71887E-5 3.09471E-5 1.9932E-5 SPO2424 K00098 nan Threonine dehydrogenase or related Zn-dependent dehydrogenase (Tdh) (PDB:4A2C)
Ruegeria pomeroyi DSS-3 2422 SPO2425 K00014 Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate Shikimate 5-dehydrogenase (AroE) (PDB:1NPD)
Ruegeria pomeroyi DSS-3 2423 SPO2426 K15270 nan Permease of the drug/metabolite transporter (DMT) superfamily (RhaT) (PDB:5I20)
Ruegeria pomeroyi DSS-3 2424 3.62638E-5 2.51707E-5 2.28825E-6 SPO2427 K18335 nan NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family (FabG) (PDB:6L1H)
Ruegeria pomeroyi DSS-3 2425 4.54618E-6 6.81388E-5 6.9102E-5 1.63663E-5 SPO2428 K00020 nan 3-hydroxyisobutyrate dehydrogenase or related beta-hydroxyacid dehydrogenase (MmsB) (PDB:1I36)
Ruegeria pomeroyi DSS-3 2426 SPO2429 nan Predicted dehydrogenase (MviM) (PDB:3UUW)
Ruegeria pomeroyi DSS-3 2427 SPO2430 K01685 D-Galacturonate degradation (bacteria), D-galacturonate => pyruvate + D-glyceraldehyde 3P Altronate dehydratase (UxaA) (PDB:6U7L)
Ruegeria pomeroyi DSS-3 2428 SPO2431 K11690 nan TRAP-type mannitol/chloroaromatic compound transport system, large permease component (FcbT3)
Ruegeria pomeroyi DSS-3 2429 SPO2432 K21394 nan TRAP-type C4-dicarboxylate transport system, small permease component YiaM (DctM)
Ruegeria pomeroyi DSS-3 2430 8.3133E-4 4.77363E-4 9.153E-6 SPO2433 K21395 nan TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component (FcbT1) (PDB:2HZK)
Ruegeria pomeroyi DSS-3 2431 4.32332E-5 9.94407E-5 2.64852E-5 1.71375E-5 SPO2434 nan DNA-binding transcriptional regulator, GntR family (GntR) (PDB:3FMS)
Ruegeria pomeroyi DSS-3 2432 0.001125719 0.003595138 0.002581727 0.001358289 SPO2435 K18336 nan 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) (YcgM) (PDB:1GTT)
Ruegeria pomeroyi DSS-3 2433 SPO2436 nan Glycine cleavage system protein T (aminomethyltransferase) (GcvT) (PDB:2GAH) (PUBMED:25433025;25505271)!!!Glycine/D-amino acid oxidase (deaminating) (DadA) (PDB:3AWI)
Ruegeria pomeroyi DSS-3 2434 SPO2437 K01799 Nicotinate degradation, nicotinate => fumarate Maleate cis-trans isomerase (PDB:2DGD)
Ruegeria pomeroyi DSS-3 2435 6.10199E-6 SPO2438 K00477 nan Ectoine hydroxylase-related dioxygenase, phytanoyl-CoA dioxygenase (PhyH) family (PhyH) (PDB:2A1X)
Ruegeria pomeroyi DSS-3 2436 4.22445E-6 SPO2439 K03710 nan DNA-binding transcriptional regulator, GntR family (MngR) (PDB:2WV0)
Ruegeria pomeroyi DSS-3 2437 9.29601E-6 2.38359E-5 3.57538E-6 SPO2440 K01271 nan Xaa-Pro aminopeptidase (PepP) (PDB:1A16)
Ruegeria pomeroyi DSS-3 2438 1.695E-6 SPO2441 K02002 nan ABC-type proline/glycine betaine transport system, periplasmic component (ProX) (PDB:1R9L)
Ruegeria pomeroyi DSS-3 2439 SPO2442 K02001 nan ABC-type proline/glycine betaine transport system, permease component (ProW)
Ruegeria pomeroyi DSS-3 2440 2.4408E-5 1.55575E-6 1.55575E-6 SPO2443 K02000 nan ABC-type proline/glycine betaine transport system, ATPase component (ProV)
Ruegeria pomeroyi DSS-3 2441 0.002090802 0.002684608 0.004661483 0.003548742 SPO2444 K00940 Adenine ribonucleotide biosynthesis, IMP => ADP,ATP Nucleoside diphosphate kinase (Ndk) (PDB:1B4S)
Ruegeria pomeroyi DSS-3 2442 SPO2445 K07552 nan Predicted arabinose efflux permease AraJ, MFS family (AraJ) (PDB:4LDS)
Ruegeria pomeroyi DSS-3 2443 1.64486E-4 2.69138E-4 6.32982E-5 1.28974E-4 SPO2446 K06158 nan ATPase components of ABC transporters with duplicated ATPase domains (Uup) (PDB:5ZXD)
Ruegeria pomeroyi DSS-3 2444 SPO2447 nan L-amino acid N-acyltransferase MnaT (MnaT) (PDB:3DR6) (PUBMED:27941785)
Ruegeria pomeroyi DSS-3 2445 SPO2448 K05595 nan Small neutral amino acid transporter SnatA, MarC family (MarC) (PUBMED:17954692;12761179)
Ruegeria pomeroyi DSS-3 2446 1.13819E-5 2.06529E-5 1.84957E-5 1.61244E-5 SPO2449 K06985 nan Predicted aspartyl protease (PDB:5C9F)
Ruegeria pomeroyi DSS-3 2447 8.78686E-6 4.18789E-5 8.78686E-6 2.12349E-5 SPO2450 K01799 Nicotinate degradation, nicotinate => fumarate Maleate cis-trans isomerase (PDB:2DGD)
Ruegeria pomeroyi DSS-3 2448 SPO2451 K00655 Triacylglycerol biosynthesis 1-acyl-sn-glycerol-3-phosphate acyltransferase (PlsC) (PDB:1IUQ)
Ruegeria pomeroyi DSS-3 2449 3.20949E-5 2.02079E-5 1.42644E-5 SPO2452 K02339 nan DNA polymerase III, chi subunit (HolC) (PDB:1EM8)
Ruegeria pomeroyi DSS-3 2450 0.003685514 0.014765077 0.005026156 0.003508952 SPO2453 K01255 nan Leucyl aminopeptidase (PepB) (PDB:3H8E) (PUBMED:19553197;23825549)
Ruegeria pomeroyi DSS-3 2451 4.58903E-5 5.68913E-5 4.58903E-5 5.51687E-5 SPO2454 K11720 nan Lipopolysaccharide export LptBFGC system, permease protein LptF (LptF) (PDB:6S8H)
Ruegeria pomeroyi DSS-3 2452 3.25071E-5 4.02533E-4 8.92351E-6 7.16432E-5 SPO2455 K04744 nan LPS assembly outer membrane protein LptD (organic solvent tolerance protein OstA) (LptD) (PDB:4N4R)
Ruegeria pomeroyi DSS-3 2453 0.00122099 0.003532894 0.001511575 0.001202328 SPO2456 K03771 nan Peptidyl-prolyl isomerase, parvulin family (SurA) (PDB:2ZR5)
Ruegeria pomeroyi DSS-3 2454 8.43566E-5 6.12546E-5 5.79593E-5 6.94364E-5 SPO2457 K00097 Pyridoxal-P biosynthesis, erythrose-4P => pyridoxal-P 4-hydroxy-L-threonine phosphate dehydrogenase PdxA (PdxA) (PDB:1PS6)
Ruegeria pomeroyi DSS-3 2455 3.14941E-5 4.01114E-5 3.47748E-5 3.67431E-5 SPO2458 K02528 nan 16S rRNA A1518 and A1519 N6-dimethyltransferase RsmA/KsgA/DIM1 (may also have DNA glycosylase/AP lyase activity) (RsmA) (PDB:1QYR)
Ruegeria pomeroyi DSS-3 2456 6.74838E-4 0.002534812 0.00322759 0.001307015 SPO2459 nan
Ruegeria pomeroyi DSS-3 2457 SPO2460 K02493 nan Methylase of polypeptide chain release factors (HemK) (PDB:1NV8)
Ruegeria pomeroyi DSS-3 2458 1.81495E-4 1.04896E-4 4.90245E-5 5.58045E-5 SPO2461 K02835 nan Protein chain release factor RF1 (PrfA) (PDB:1RQ0)
Ruegeria pomeroyi DSS-3 2459 SPO2462 nan
Ruegeria pomeroyi DSS-3 2460 4.09835E-6 1.02459E-5 1.63934E-5 SPO2463 nan Uncharacterized conserved protein, DUF1499 family
Ruegeria pomeroyi DSS-3 2461 5.66613E-5 7.0613E-5 7.7873E-5 8.89145E-5 SPO2464 K01480 Polyamine biosynthesis, arginine => agmatine => putrescine => spermidine Arginase/agmatinase family enzyme (SpeB) (PDB:1CEV)
Ruegeria pomeroyi DSS-3 2462 SPO2465 nan DNA-binding transcriptional regulator, HxlR family (HxlR) (PDB:1YYV)
Ruegeria pomeroyi DSS-3 2463 SPO2466 nan Lactoylglutathione lyase-related enzyme, vicinal oxygen chelate (VOC) family (VOC) (PDB:3OXH) (PUBMED:31710815)
Ruegeria pomeroyi DSS-3 2464 2.03213E-4 2.85747E-4 1.226E-4 2.18328E-4 SPO2467 K01480 Polyamine biosynthesis, arginine => agmatine => putrescine => spermidine Arginase/agmatinase family enzyme (SpeB) (PDB:1CEV)
Ruegeria pomeroyi DSS-3 2465 4.88869E-4 0.001362308 1.65085E-4 4.60724E-4 SPO2468 K01451 nan Metal-dependent amidase/aminoacylase/carboxypeptidase (AbgB) (PDB:3RAM) (PUBMED:17307853)
Ruegeria pomeroyi DSS-3 2466 6.53785E-5 1.08435E-4 9.85706E-5 7.44309E-5 SPO2469 K04765 nan Uncharacterized conserved protein YabN, contains tetrapyrrole methylase and MazG-like pyrophosphatase domain (YabN)
Ruegeria pomeroyi DSS-3 2467 3.0354E-4 7.60958E-4 2.73127E-4 2.95937E-4 SPO2470 nan Inosine-uridine nucleoside N-ribohydrolase (URH1) (PDB:1EZR)
Ruegeria pomeroyi DSS-3 2468 3.68576E-6 SPO2471 nan Ribosomal protein S18 acetylase RimI and related acetyltransferases (RimI) (PDB:1GHE)
Ruegeria pomeroyi DSS-3 2469 SPO2472 nan
Ruegeria pomeroyi DSS-3 2470 9.65949E-5 4.6469E-5 4.92018E-5 4.12427E-5 SPO2473 K01560 nan FMN and 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB, HAD superfamily (riboflavin biosynthesis) (YigB) (PDB:4JB3) (PUBMED:24123841)
Ruegeria pomeroyi DSS-3 2471 0.002875113 0.023876948 0.009254203 0.004999035 SPO2474 K01689 Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate Enolase (Eno) (PDB:1E9I)
Ruegeria pomeroyi DSS-3 2472 SPO2475 K15270 nan Permease of the drug/metabolite transporter (DMT) superfamily (RhaT) (PDB:5I20)
Ruegeria pomeroyi DSS-3 2473 6.53785E-5 6.10199E-6 1.30757E-4 4.70725E-5 SPO2476 nan
Ruegeria pomeroyi DSS-3 2474 1.00215E-4 4.12129E-5 6.81462E-5 9.35341E-5 SPO2477 K03711 nan Fe2+ or Zn2+ uptake regulation protein Fur/Zur (Fur) (PDB:1MZB)
Ruegeria pomeroyi DSS-3 2475 8.49919E-6 3.04786E-4 4.79442E-5 2.41464E-4 SPO2478 K11927 nan Superfamily II DNA and RNA helicase (SrmB) (PDB:3RRM)
Ruegeria pomeroyi DSS-3 2476 3.45637E-5 2.4408E-5 1.53616E-5 9.601E-6 SPO2479 K09705 nan Predicted sugar epimerase, cupin superfamily (CFF1) (PDB:1XE7) (PUBMED:15608122)
Ruegeria pomeroyi DSS-3 2477 1.15316E-4 2.40101E-4 1.54516E-4 1.42337E-4 SPO2480 K08997 nan Protein adenylyltransferase (AMPylase) SelO/YdiU (selenoprotein O) (SelO) (PDB:6EAC) (PUBMED:30270044)
Ruegeria pomeroyi DSS-3 2478 SPO2481 K15268 nan Permease of the drug/metabolite transporter (DMT) superfamily (RhaT) (PDB:5I20)
Ruegeria pomeroyi DSS-3 2479 2.35699E-6 9.42796E-6 9.42796E-6 SPO2482 nan Metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family (ElsH) (PUBMED:15178340)
Ruegeria pomeroyi DSS-3 2480 1.5255E-6 6.10199E-6 SPO2483 K09001 nan 1,6-Anhydro-N-acetylmuramate kinase (AnmK) (PDB:3CQY) (PUBMED:15901686)
Ruegeria pomeroyi DSS-3 2481 0.00263672 0.004622614 0.002858818 0.00296689 SPO2484 K01866 nan Tyrosyl-tRNA synthetase (TyrS) (PDB:4OUD)
Ruegeria pomeroyi DSS-3 2482 SPO2485 nan
Ruegeria pomeroyi DSS-3 2483 SPO2486 nan Lipid II:glycine glycyltransferase (Peptidoglycan interpeptide bridge formation enzyme) (FmhB) (PDB:1LRZ)
Ruegeria pomeroyi DSS-3 2484 5.68871E-5 7.54921E-4 2.13691E-4 3.06315E-5 SPO2487 K08683 nan NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family (FabG) (PDB:6L1H)
Ruegeria pomeroyi DSS-3 2485 1.68768E-5 2.18501E-4 1.73329E-5 2.00696E-5 SPO2488 K15738 nan ATPase components of ABC transporters with duplicated ATPase domains (Uup) (PDB:5ZXD)
Ruegeria pomeroyi DSS-3 2486 2.08813E-6 SPO2489 K22310 nan Putative hemolysin
Ruegeria pomeroyi DSS-3 2487 2.30301E-4 1.19925E-4 3.69662E-4 4.1336E-4 SPO2490 nan Outer membrane protein assembly factor BamE, lipoprotein component of the BamABCDE complex (BamE) (PDB:2KM7)
Ruegeria pomeroyi DSS-3 2488 7.06864E-5 2.27428E-4 9.96861E-5 1.45904E-4 SPO2491 K07040 nan 23S rRNA accumulation protein YceD (essential in plants, uncharacterized in bacteria) (YceD) (PUBMED:27574185)
Ruegeria pomeroyi DSS-3 2489 0.001437557 9.93896E-4 7.32238E-4 0.001502166 SPO2492 K02911 nan Ribosomal protein L32 (RpmF) (PDB:1VS6) (PUBMED:17114934)
Ruegeria pomeroyi DSS-3 2490 6.93505E-4 0.001149364 8.12173E-4 6.41942E-4 SPO2493 K03621 nan Acyl-ACP:phosphate acyltransferase (fatty acid/phospholipid biosynthesis) (PlsX) (PDB:2GK3) (PUBMED:18992246)
Ruegeria pomeroyi DSS-3 2491 9.26633E-4 0.002209361 0.001080222 0.001008245 SPO2494 K00648 Fatty acid biosynthesis, initiation 3-oxoacyl-[acyl-carrier-protein] synthase III (FabH) (PDB:1UB7)
Ruegeria pomeroyi DSS-3 2492 7.27662E-4 3.23568E-4 0.005874384 4.86938E-4 SPO2495 K04764 nan Bacterial nucleoid DNA-binding protein IHF-alpha (HimA) (PDB:1B8Z)
Ruegeria pomeroyi DSS-3 2493 1.2769E-4 2.20688E-4 2.15453E-4 1.28067E-4 SPO2496 nan DNA-binding transcriptional regulator, MerR family (SoxR) (PDB:2VZ4)
Ruegeria pomeroyi DSS-3 2494 SPO_tRNA-Pro-5 nan
Ruegeria pomeroyi DSS-3 2495 5.53768E-4 0.001546903 7.8374E-4 5.31842E-4 SPO2498 K01494 nan dCTP deaminase (Dcd) (PDB:1XS1)
Ruegeria pomeroyi DSS-3 2496 7.73494E-5 0.004747881 0.003155845 3.14553E-4 SPO2499 nan
Ruegeria pomeroyi DSS-3 2497 9.32091E-5 2.03128E-4 8.98502E-5 1.08324E-4 SPO2500 K06024 nan Chromosome segregation and condensation protein ScpB (ScpB) (PDB:1T6S)
Ruegeria pomeroyi DSS-3 2498 7.81749E-6 1.1064E-5 7.81749E-6 9.12042E-6 SPO2501 K05896 nan Chromatin segregation and condensation protein Rec8/ScpA/Scc1, kleisin family (ScpA) (PDB:3W6J)
Ruegeria pomeroyi DSS-3 2499 1.39344E-4 1.30589E-4 2.51912E-4 1.44262E-4 SPO2502 K01207 nan Periplasmic beta-glucosidase and related glycosidases (BglX) (PDB:2X40)
Ruegeria pomeroyi DSS-3 2500 5.38411E-6 2.37492E-4 1.52549E-5 6.01226E-5 SPO2503 nan Cell division protein FtsN (FtsN) (PDB:1UTA)
Ruegeria pomeroyi DSS-3 2501 0.003086177 0.008201441 0.002534478 0.003304526 SPO2504 K01887 nan Arginyl-tRNA synthetase (ArgS) (PDB:1BS2)
Ruegeria pomeroyi DSS-3 2502 7.56015E-5 6.45387E-5 9.5096E-5 1.67369E-4 SPO2505 K01129 nan dGTP triphosphohydrolase (Dgt) (PDB:6OI7)
Ruegeria pomeroyi DSS-3 2503 6.41564E-5 6.92044E-5 1.65951E-4 1.47132E-4 SPO2506 nan Fe-S cluster assembly iron-binding protein IscA (IscA) (PDB:1R94)
Ruegeria pomeroyi DSS-3 2504 SPO2507 K15270 nan Permease of the drug/metabolite transporter (DMT) superfamily (RhaT) (PDB:5I20)
Ruegeria pomeroyi DSS-3 2505 SPO2508 nan
Ruegeria pomeroyi DSS-3 2506 7.92007E-4 1.76232E-4 6.03824E-4 6.97403E-4 SPO2509 K01142 nan Exonuclease III (XthA) (PDB:1AKO)
Ruegeria pomeroyi DSS-3 2507 1.41541E-5 3.75084E-5 8.49247E-6 SPO2510 nan 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases (UbiH) (PDB:1BF3)
Ruegeria pomeroyi DSS-3 2508 1.12964E-4 3.92776E-4 7.809E-4 1.79584E-4 SPO2511 K06204 nan RNA polymerase-binding transcription factor DksA (DksA) (PDB:1TJL)
Ruegeria pomeroyi DSS-3 2509 2.13027E-4 0.001488931 2.48205E-4 3.02928E-4 SPO2512 nan MoxR-like ATPase (MoxR) (PDB:2R44)
Ruegeria pomeroyi DSS-3 2510 1.14174E-6 9.73721E-7 SPO2513 nan
Ruegeria pomeroyi DSS-3 2511 SPO2514 nan
Ruegeria pomeroyi DSS-3 2512 1.39386E-6 1.77732E-5 2.78771E-6 1.53324E-5 SPO2515 K09989 nan Uncharacterized CoxE-like protein,  contains von Willebrand factor type A (vWA) domain (CoxE2)
Ruegeria pomeroyi DSS-3 2513 SPO2516 nan
Ruegeria pomeroyi DSS-3 2514 6.26257E-5 9.60455E-5 9.63472E-6 5.2991E-5 SPO2517 nan Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains (BepA) (PDB:6AIT) (PUBMED:24003122)
Ruegeria pomeroyi DSS-3 2515 5.34381E-5 2.2812E-4 3.3433E-5 3.3433E-5 SPO2518 nan Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase) (SsuD) (PDB:1BRL)
Ruegeria pomeroyi DSS-3 2516 1.32339E-5 4.77547E-5 SPO2519 K07063 nan Predicted nucleic acid-binding protein, contains PIN domain
Ruegeria pomeroyi DSS-3 2517 9.87978E-5 7.08216E-5 1.64436E-4 1.04022E-4 SPO2520 K06969 nan 23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI (RlmK) (PDB:2B78)
Ruegeria pomeroyi DSS-3 2518 3.16194E-5 2.1286E-6 1.91574E-5 SPO2521 nan
Ruegeria pomeroyi DSS-3 2519 2.41397E-5 SPO2522 nan
Ruegeria pomeroyi DSS-3 2520 2.25146E-4 1.64577E-4 2.40352E-4 1.98363E-4 SPO2523 K00982 nan Glutamine synthetase adenylyltransferase (GlnE1) (PDB:1V4A)
Ruegeria pomeroyi DSS-3 2521 SPO2524 nan Cys-tRNA(Pro) deacylase, prolyl-tRNA editing enzyme YbaK/EbsC (EbsC) (PDB:1DBU)
Ruegeria pomeroyi DSS-3 2522 SPO2525 nan
Ruegeria pomeroyi DSS-3 2523 SPO2526 nan
Ruegeria pomeroyi DSS-3 2524 5.73256E-6 1.68978E-5 4.58604E-6 5.73256E-6 SPO2527 K01426 nan Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase (GatA) (PDB:3H0L)
Ruegeria pomeroyi DSS-3 2525 9.61784E-7 9.61784E-7 SPO2528 K00666 beta-Oxidation, acyl-CoA synthesis O-succinylbenzoic acid-CoA ligase MenE or related acyl-CoA synthetase (AMP-forming) (MenE/FadK) (PDB:5EY9) (PUBMED:25151136;27455459)
Ruegeria pomeroyi DSS-3 2526 SPO2529 nan Predicted amidohydrolase YtcJ (YtcJ) (PDB:3ICJ)
Ruegeria pomeroyi DSS-3 2527 SPO2530 K01998 nan ABC-type branched-chain amino acid transport system, permease component (LivM)
Ruegeria pomeroyi DSS-3 2528 SPO2531 K01997 nan Branched-chain amino acid ABC-type transport system, permease component (LivH)
Ruegeria pomeroyi DSS-3 2529 SPO2532 K01996 nan ABC-type branched-chain amino acid transport system, ATPase component LivF (LivF) (PDB:1JI0) (PUBMED:26527648;32250026)
Ruegeria pomeroyi DSS-3 2530 SPO2533 nan ABC-type branched-chain amino acid transport system, ATPase component LivG (LivG) (PDB:1G9X) (PUBMED:29514851)
Ruegeria pomeroyi DSS-3 2531 1.25098E-6 4.22445E-6 SPO2534 K01999 nan ABC-type branched-chain amino acid transport system, periplasmic component (LivK) (PDB:1USG)
Ruegeria pomeroyi DSS-3 2532 SPO2535 nan Acetoin utilization deacetylase AcuC or a related deacetylase (AcuC) (PDB:1C3P)
Ruegeria pomeroyi DSS-3 2533 SPO2536 nan DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains (CitB) (PDB:1A04)
Ruegeria pomeroyi DSS-3 2534 SPO2537 nan
Ruegeria pomeroyi DSS-3 2535 SPO2538 K00249 beta-Oxidation Acyl-CoA dehydrogenase related to the alkylation response protein AidB (CaiA) (PDB:1BUC)
Ruegeria pomeroyi DSS-3 2536 1.06637E-6 1.68978E-5 9.5973E-6 1.06637E-6 SPO2539 nan O-succinylbenzoic acid-CoA ligase MenE or related acyl-CoA synthetase (AMP-forming) (MenE/FadK) (PDB:5EY9) (PUBMED:25151136;27455459)
Ruegeria pomeroyi DSS-3 2537 SPO2540 nan Acetyl/propionyl-CoA carboxylase, alpha subunit (PccA) (PDB:3U9S)
Ruegeria pomeroyi DSS-3 2538 SPO2541 nan Acetyl-CoA carboxylase, carboxyltransferase component (MmdA) (PDB:1OD2)
Ruegeria pomeroyi DSS-3 2539 SPO2542 nan Biotin carboxyl carrier protein (AccB) (PDB:1A6X)
Ruegeria pomeroyi DSS-3 2540 1.64313E-4 1.62722E-4 8.38103E-5 1.45566E-4 SPO2543 K22293 nan DNA-binding transcriptional regulator, GntR family (GntR) (PDB:3FMS)
Ruegeria pomeroyi DSS-3 2541 7.29806E-6 7.29806E-6 7.29806E-6 SPO2544 K07046 nan Predicted metal-dependent hydrolase, TIM-barrel fold
Ruegeria pomeroyi DSS-3 2542 SPO2545 K21395 nan TRAP-type C4-dicarboxylate transport system, periplasmic component (DctP) (PDB:2CEX)
Ruegeria pomeroyi DSS-3 2543 SPO2546 K21394 nan TRAP-type C4-dicarboxylate transport system, small permease component YiaM (DctM)
Ruegeria pomeroyi DSS-3 2544 SPO2547 K11690 nan TRAP-type C4-dicarboxylate transport system, large permease component (DctQ)
Ruegeria pomeroyi DSS-3 2545 6.65671E-6 1.49776E-5 SPO2548 K00344 nan NADPH:quinone reductase or related Zn-dependent oxidoreductase (Qor) (PDB:2VCY)
Ruegeria pomeroyi DSS-3 2546 SPO2549 nan Predicted  kinase, aminoglycoside phosphotransferase (APT) family (YcbJ)
Ruegeria pomeroyi DSS-3 2547 2.08549E-5 3.14863E-5 1.69929E-5 4.63442E-5 SPO2550 K05799 nan DNA-binding transcriptional regulator, FadR family (FadR) (PDB:1E2X)
Ruegeria pomeroyi DSS-3 2548 SPO2551 K02032 nan ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component (DppD) (PDB:4FWI)
Ruegeria pomeroyi DSS-3 2549 SPO2552 K02031 nan ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component (DppD) (PDB:4FWI)!!!ABC-type dipeptide/oligopeptide/nickel transport system, permease component (DppC)
Ruegeria pomeroyi DSS-3 2550 SPO2553 K02033 nan ABC-type dipeptide/oligopeptide/nickel transport system, permease component (DppB)
Ruegeria pomeroyi DSS-3 2551 SPO2554 K02035 nan ABC-type transport system, periplasmic component (DdpA) (PDB:3RQT)
Ruegeria pomeroyi DSS-3 2552 SPO2555 nan Uncharacterized conserved protein, Ntn-hydrolase superfamily (PDB:2IMH)
Ruegeria pomeroyi DSS-3 2553 SPO2556 K02083 nan Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase or related deacylase (ArgE) (PDB:1CG2)
Ruegeria pomeroyi DSS-3 2554 SPO2559 K01053 Ascorbate biosynthesis, animals, glucose-1P => ascorbate Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component (AraH)!!!Sugar lactone lactonase YvrE (YvrE) (PDB:1E1A)
Ruegeria pomeroyi DSS-3 2555 2.2959E-5 2.48497E-6 4.5918E-6 1.46937E-5 SPO2560 K08319 nan 3-hydroxyisobutyrate dehydrogenase or related beta-hydroxyacid dehydrogenase (MmsB) (PDB:1I36)
Ruegeria pomeroyi DSS-3 2556 5.35785E-5 1.30757E-6 1.67433E-5 1.47341E-5 SPO2561 K21948 nan D-threonate/D-erythronate kinase OtnK and related C4-acid sugar kinases, YgbK/DUF1537 family (OtnK) (PDB:1YZY) (PUBMED:27402745)
Ruegeria pomeroyi DSS-3 2557 7.79068E-5 2.05563E-5 9.87672E-5 7.49267E-5 SPO2562 K22130 nan 5-methylthioribulose/5-deoxyribulose/Fuculose 1-phosphate aldolase (methionine salvage, sugar degradation) (AraD) (PDB:1FUA) (PUBMED:31950558)
Ruegeria pomeroyi DSS-3 2558 3.46793E-4 3.95873E-5 1.1815E-4 1.41488E-4 SPO2563 K01816 nan Hydroxypyruvate/dehydroerythronate isomerase, Hyi/OtnI family (Hyi) (PDB:1K77) (PUBMED:27402745)
Ruegeria pomeroyi DSS-3 2559 SPO2564 nan
Ruegeria pomeroyi DSS-3 2560 SPO2565 K06949 nan Ribosome biogenesis GTPase RsgA (RsgA) (PDB:1T9H)
Ruegeria pomeroyi DSS-3 2561 8.41653E-6 SPO2566 K06996 nan Lactoylglutathione lyase-related enzyme, vicinal oxygen chelate (VOC) family (VOC) (PDB:3OXH) (PUBMED:31710815)
Ruegeria pomeroyi DSS-3 2562 4.14649E-4 9.59108E-5 4.76692E-4 1.19173E-4 SPO2567 nan
Ruegeria pomeroyi DSS-3 2563 1.89372E-5 1.1064E-5 3.78744E-6 9.46862E-6 SPO2568 nan
Ruegeria pomeroyi DSS-3 2564 4.78379E-6 7.37524E-6 1.24378E-5 1.33946E-5 SPO2569 K21420 nan Arginyl-tRNA--protein-N-Asp/Glu arginylyltransferase (Ate1)
Ruegeria pomeroyi DSS-3 2565 1.08964E-4 1.74343E-5 3.92271E-5 SPO2570 nan Catechol 2,3-dioxygenase or related enzyme, vicinal oxygen chelate (VOC) family (GloA) (PDB:3R4Q) (PUBMED:11830595)
Ruegeria pomeroyi DSS-3 2566 5.13454E-4 5.29565E-4 6.21095E-5 2.04074E-4 SPO2571 nan TRAP-type mannitol/chloroaromatic compound transport system, large permease component (FcbT3)
Ruegeria pomeroyi DSS-3 2567 7.08465E-4 2.82398E-4 6.18124E-5 4.82612E-4 SPO2572 nan TRAP-type mannitol/chloroaromatic compound transport system, small permease component (FcbT2)
Ruegeria pomeroyi DSS-3 2568 0.19023496 0.048697975 0.07435213 0.070401385 SPO2573 K21395 nan TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component (FcbT1) (PDB:2HZK)
Ruegeria pomeroyi DSS-3 2569 1.68978E-5 1.02842E-6 2.57106E-6 SPO2574 K02480 nan Signal transduction histidine kinase (PDB:2QHK)
Ruegeria pomeroyi DSS-3 2570 3.17812E-5 1.49107E-5 9.91573E-5 5.84773E-5 SPO2575 nan DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains (CitB) (PDB:1A04)
Ruegeria pomeroyi DSS-3 2571 SPO2576 nan DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA (AcrR) (PDB:2QOP)
Ruegeria pomeroyi DSS-3 2572 SPO2577 K07148 nan Uncharacterized membrane protein YeiB (YeiB)
Ruegeria pomeroyi DSS-3 2573 0.001096945 0.007317209 7.49194E-4 0.001836562 SPO2578 K01652 Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine Acetolactate synthase large subunit or other thiamine pyrophosphate-requiring enzyme (IlvB) (PDB:1BFD)
Ruegeria pomeroyi DSS-3 2574 0.001649012 0.002089344 8.85772E-4 0.001524513 SPO2579 K01653 Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine Acetolactate synthase, small subunit (IlvH) (PDB:2F1F)
Ruegeria pomeroyi DSS-3 2575 4.50147E-6 1.80059E-5 SPO2580 nan
Ruegeria pomeroyi DSS-3 2576 5.18093E-5 2.32345E-4 5.31909E-5 9.80922E-5 SPO2581 nan Transcriptional regulator, contains XRE-family HTH domain (HipB) (PDB:1ADR)
Ruegeria pomeroyi DSS-3 2577 8.48153E-6 1.90834E-5 SPO2582 nan Uncharacterized membrane protein
Ruegeria pomeroyi DSS-3 2578 0.001023684 0.001490126 9.24314E-4 6.43649E-4 SPO2583 K01426 nan Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase (GatA) (PDB:3H0L)
Ruegeria pomeroyi DSS-3 2579 1.53616E-5 SPO2584 K08234 nan Catechol 2,3-dioxygenase or related enzyme, vicinal oxygen chelate (VOC) family (GloA) (PDB:3R4Q) (PUBMED:11830595)
Ruegeria pomeroyi DSS-3 2580 0.001154008 0.001417985 0.001537701 0.001037338 SPO2585 K02836 nan Protein chain release factor PrfB (PrfB) (PDB:1GQE)
Ruegeria pomeroyi DSS-3 2581 SPO2586 nan Ca2+-binding protein, RTX toxin-related (PDB:1AF0) (PUBMED:15135544)
Ruegeria pomeroyi DSS-3 2582 9.4614E-4 0.004399146 0.001153408 9.74991E-4 SPO2587 K05366 nan Membrane carboxypeptidase/penicillin-binding protein (MrcA) (PDB:3D0F)
Ruegeria pomeroyi DSS-3 2583 1.09836E-4 4.88174E-5 9.03999E-5 1.6498E-4 SPO2588 K01448 nan N-acetylmuramoyl-L-alanine amidase (AmiC) (PDB:1JWQ)
Ruegeria pomeroyi DSS-3 2584 6.96003E-4 0.001564255 5.28943E-4 5.76944E-4 SPO2589 K19793 Methanofuran biosynthesis Aspartate/methionine/tyrosine aminotransferase (AspB) (PDB:2O0R)
Ruegeria pomeroyi DSS-3 2585 7.95026E-5 6.79197E-4 5.01478E-5 1.76129E-4 SPO2590 K01423 nan Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains (BepA) (PDB:6AIT) (PUBMED:24003122)
Ruegeria pomeroyi DSS-3 2586 0.001901423 0.00273423 0.002642015 0.002150951 SPO2591 nan Protein thiol-disulfide isomerase DsbC (DsbG) (PDB:2HI7)
Ruegeria pomeroyi DSS-3 2587 SPO2592 K17838 nan Beta-lactamase class D (YbxI) (PDB:5CTN)
Ruegeria pomeroyi DSS-3 2588 SPO2593 nan
Ruegeria pomeroyi DSS-3 2589 3.88087E-4 7.15978E-4 3.4464E-4 3.21209E-4 SPO2594 K03526 C5 isoprenoid biosynthesis, non-mevalonate pathway 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase IspG/GcpE (IspG) (PDB:2Y0F)
Ruegeria pomeroyi DSS-3 2590 2.32819E-4 2.70596E-4 5.44614E-4 2.83491E-4 SPO2595 K15539 nan Cytoskeletal protein RodZ, contains Xre-like HTH and DUF4115 domains (RodZ) (PDB:3FYM)
Ruegeria pomeroyi DSS-3 2591 1.2144E-5 1.98549E-4 3.036E-5 2.96853E-5 SPO2596 K00643 Heme biosynthesis, animals and fungi, glycine => heme 7-keto-8-aminopelargonate synthetase or related enzyme (BioF) (PDB:1BS0)
Ruegeria pomeroyi DSS-3 2592 0.002668629 0.008171433 0.00366674 0.003785214 SPO2597 K23980 nan Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase or related deacylase (ArgE) (PDB:1CG2)
Ruegeria pomeroyi DSS-3 2593 1.54941E-5 7.04075E-6 2.7545E-5 1.72156E-5 SPO2598 nan Arylsulfatase A or related enzyme, AlkP superfamily (AslA) (PDB:1E1Z)
Ruegeria pomeroyi DSS-3 2594 SPO_tRNA-Asp-1 nan
Ruegeria pomeroyi DSS-3 2595 SPO_tRNA-Asp-2 nan
Ruegeria pomeroyi DSS-3 2596 SPO2601 K06911 nan Redox-sensitive bicupin YhaK, pirin superfamily (YhaK) (PDB:1J1L) (PUBMED:18561187)
Ruegeria pomeroyi DSS-3 2597 7.57488E-6 SPO2602 nan DNA-binding transcriptional regulator, MurR/RpiR family, contains HTH and SIS domains (RpiR) (PDB:2O3F)
Ruegeria pomeroyi DSS-3 2598 9.07475E-6 SPO2603 nan Predicted N-formylglutamate amidohydrolase (HutG2) (PDB:2ODF)
Ruegeria pomeroyi DSS-3 2599 SPO2604 nan TRAP-type mannitol/chloroaromatic compound transport system, small permease component (FcbT2)
Ruegeria pomeroyi DSS-3 2600 SPO2605 K11690 nan TRAP-type mannitol/chloroaromatic compound transport system, large permease component (FcbT3)
Ruegeria pomeroyi DSS-3 2601 7.41551E-4 7.815E-4 8.18979E-4 0.001290996 SPO2606 K21395 nan TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component (FcbT1) (PDB:2HZK)
Ruegeria pomeroyi DSS-3 2602 5.14475E-4 0.001441349 3.26747E-4 4.29845E-4 SPO2607 K01915 nan Glutamine synthetase (GlnA) (PDB:1F1H)
Ruegeria pomeroyi DSS-3 2603 6.9067E-4 0.001402917 7.42631E-4 5.85951E-4 SPO2608 nan Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenase (AdhE) (PDB:1A4S)
Ruegeria pomeroyi DSS-3 2604 0.00121223 0.002213184 9.58541E-4 0.001328504 SPO2609 nan Alcohol dehydrogenase, class IV (EutG) (PDB:6AHC)
Ruegeria pomeroyi DSS-3 2605 5.24026E-5 2.40738E-4 4.71623E-5 1.75374E-4 SPO2610 nan
Ruegeria pomeroyi DSS-3 2606 SPO_tRNA-Val-3 nan
Ruegeria pomeroyi DSS-3 2607 6.59685E-4 0.001609723 0.001667629 0.001042547 SPO2612 nan Bacterial nucleoid DNA-binding protein IHF-alpha (HimA) (PDB:1B8Z)
Ruegeria pomeroyi DSS-3 2608 0.004420787 0.02402662 0.006916143 0.005478794 SPO2613 K01338 nan ATP-dependent Lon protease, bacterial type (Lon) (PDB:6ON2)
Ruegeria pomeroyi DSS-3 2609 2.41929E-6 SPO2614 nan
Ruegeria pomeroyi DSS-3 2610 0.053654622 0.00651055 0.01525531 0.027765237 SPO2615 K10680 nan 2,4-dienoyl-CoA reductase or related NADH-dependent reductase, Old Yellow Enzyme (OYE) family (FadH) (PDB:1BWK)
Ruegeria pomeroyi DSS-3 2611 1.46058E-5 2.08093E-4 7.25423E-5 1.82573E-5 SPO2616 K00773 nan Queuine/archaeosine tRNA-ribosyltransferase (Tgt) (PDB:1XW8) (PUBMED:15805528)
Ruegeria pomeroyi DSS-3 2612 0.002038084 0.001128064 6.31432E-4 0.001386553 SPO2617 nan Regulator of protease activity HflC, stomatin/prohibitin superfamily (HflC)
Ruegeria pomeroyi DSS-3 2613 SPO2618 nan
Ruegeria pomeroyi DSS-3 2614 4.57649E-6 SPO2619 nan Metal-sulfur cluster biosynthetic enzyme (PaaD) (PDB:1UWD)
Ruegeria pomeroyi DSS-3 2615 1.1515E-4 1.3031E-4 7.08618E-5 1.77154E-4 SPO2620 K13628 nan Fe-S cluster assembly iron-binding protein IscA (IscA) (PDB:1R94)
Ruegeria pomeroyi DSS-3 2616 9.29884E-5 2.2011E-4 1.22526E-4 2.29007E-4 SPO2621 K01803 Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate Triosephosphate isomerase (TpiA) (PDB:1HG3)
Ruegeria pomeroyi DSS-3 2617 1.28463E-5 8.02894E-6 3.21157E-6 SPO2622 nan Ribosomal protein S18 acetylase RimI and related acetyltransferases (RimI) (PDB:1GHE)
Ruegeria pomeroyi DSS-3 2618 SPO2623 K05834 nan Threonine/homoserine/homoserine lactone efflux protein (RhtB)
Ruegeria pomeroyi DSS-3 2619 1.45478E-5 SPO2624 K03719 nan DNA-binding transcriptional regulator, Lrp family (Lrp) (PDB:1I1G)
Ruegeria pomeroyi DSS-3 2620 SPO2625 nan 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase (UbiG) (PDB:1BHJ)
Ruegeria pomeroyi DSS-3 2621 SPO2626 K11690 nan TRAP-type C4-dicarboxylate transport system, large permease component (DctQ)
Ruegeria pomeroyi DSS-3 2622 0.001035559 1.72358E-5 2.21642E-5 3.07836E-5 SPO2627 K11689 nan TRAP-type C4-dicarboxylate transport system, small permease component YiaM (DctM)
Ruegeria pomeroyi DSS-3 2623 0.004991261 0.00441737 0.002145041 0.001010401 SPO2628 K11688 nan TRAP-type C4-dicarboxylate transport system, periplasmic component (DctP) (PDB:2CEX)
Ruegeria pomeroyi DSS-3 2624 4.96812E-5 2.69654E-5 7.31793E-5 2.73023E-5 SPO2629 K10126 nan DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains (AtoC) (PDB:1ZY2)
Ruegeria pomeroyi DSS-3 2625 3.59559E-5 8.55123E-6 6.01753E-6 SPO2630 K10125 nan Signal transduction histidine kinase regulating C4-dicarboxylate transport system (PDB:4GCZ)
Ruegeria pomeroyi DSS-3 2626 6.55066E-4 0.00171067 2.46473E-4 6.14985E-4 SPO2631 K05800 nan DNA-binding transcriptional regulator, Lrp family (Lrp) (PDB:1I1G)
Ruegeria pomeroyi DSS-3 2627 1.56097E-5 5.3215E-6 SPO2632 K02303 Siroheme biosynthesis, glutamyl-tRNA => siroheme Uroporphyrinogen-III methylase (siroheme synthase) (CysG) (PDB:1PJQ)
Ruegeria pomeroyi DSS-3 2628 3.43237E-4 3.82105E-4 0.001499681 5.50939E-4 SPO2633 nan
Ruegeria pomeroyi DSS-3 2629 0.001432425 0.018256677 0.005527475 0.001952526 SPO2634 K00381 Assimilatory sulfate reduction, sulfate => H2S Sulfite reductase, beta subunit (hemoprotein) (CysI) (PDB:1AOP)
Ruegeria pomeroyi DSS-3 2630 2.17067E-6 4.25257E-5 1.49053E-4 2.09831E-5 SPO2635 K00390 Assimilatory sulfate reduction, sulfate => H2S 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme (CysD) (PDB:1ZUN)
Ruegeria pomeroyi DSS-3 2631 1.46448E-4 0.00104537 6.65795E-4 8.4072E-5 SPO2636 nan Uncharacterized conserved protein, DUF934 family
Ruegeria pomeroyi DSS-3 2632 0.001056724 0.002412511 9.42394E-4 0.001637624 SPO2637 K00528 nan Flavodoxin/ferredoxin--NADP reductase (Fpr) (PDB:3OZU)
Ruegeria pomeroyi DSS-3 2633 4.61673E-4 8.57877E-4 0.001652566 7.14134E-4 SPO2638 K02520 nan Translation initiation factor IF-3 (InfC) (PDB:2IFE)
Ruegeria pomeroyi DSS-3 2634 9.92013E-5 1.42428E-5 9.57623E-5 8.99425E-5 SPO2639 nan Molybdopterin Mo-transferase (molybdopterin biosynthesis) (MoeA) (PDB:2NQU) (PUBMED:18801996;32239579)
Ruegeria pomeroyi DSS-3 2635 2.49321E-4 6.15553E-4 1.08937E-4 3.20635E-4 SPO2640 K07402 nan Molybdoenzyme maturation factor PaoD (Mo cofactor insertion), XdhC/CoxF family (XdhC) (PDB:2WE7) (PUBMED:24498065)
Ruegeria pomeroyi DSS-3 2636 SPO2641 nan Rhodanese-related sulfurtransferase (PspE) (PDB:1TQ1)
Ruegeria pomeroyi DSS-3 2637 SPO2642 K07112 nan Uncharacterized membrane protein YedE/YeeE, contains two sulfur transport domains (YedE)
Ruegeria pomeroyi DSS-3 2638 SPO2643 nan
Ruegeria pomeroyi DSS-3 2639 6.53784E-6 1.45902E-5 6.10198E-6 2.35362E-5 SPO2644 K07161 nan Uncharacterized protein CoxE, contains von Willebrand factor type A (vWA) domain (CoxE)
Ruegeria pomeroyi DSS-3 2640 3.10698E-4 2.96265E-4 2.04333E-4 4.81442E-5 SPO2645 K01318 nan V8-like Glu-specific endopeptidase (eMpr)
Ruegeria pomeroyi DSS-3 2641 4.54618E-5 1.28131E-5 2.90956E-5 1.72755E-4 SPO2646 nan MoxR-like ATPase (MoxR) (PDB:2R44)
Ruegeria pomeroyi DSS-3 2642 1.14999E-5 2.26E-5 5.42399E-6 SPO2647 nan Precorrin-6B methylase 2 (CobL) (PDB:1F38)
Ruegeria pomeroyi DSS-3 2643 9.59264E-6 5.77019E-5 8.4735E-5 3.99693E-5 SPO2648 nan Predicted O-linked N-acetylglucosamine transferase, SPINDLY family (Spy) (PDB:2JLB)
Ruegeria pomeroyi DSS-3 2644 2.77013E-6 1.56461E-4 7.34085E-5 3.71659E-5 SPO2649 nan Precorrin-6B methylase 2 (CobL) (PDB:1F38)
Ruegeria pomeroyi DSS-3 2645 1.38478E-4 1.46448E-4 2.21723E-4 1.91739E-4 SPO2650 nan Protein-L-isoaspartate O-methyltransferase (Pcm) (PDB:3LBF) (PUBMED:24909784)
Ruegeria pomeroyi DSS-3 2646 8.949E-5 2.17644E-4 9.12747E-5 1.16261E-4 SPO2651 nan Precorrin-6B methylase 2 (CobL) (PDB:1F38)
Ruegeria pomeroyi DSS-3 2647 1.73878E-4 3.30848E-4 9.526E-5 1.85355E-4 SPO2652 nan
Ruegeria pomeroyi DSS-3 2648 1.25527E-5 1.29154E-5 5.02106E-5 3.13817E-6 SPO2652a nan
Ruegeria pomeroyi DSS-3 2649 4.98388E-4 0.001926479 0.001050212 6.19546E-4 SPO2653 nan Dihydroorotase (PyrC) (PDB:2Y3D)
Ruegeria pomeroyi DSS-3 2650 5.13788E-4 5.7131E-4 4.06799E-4 5.0199E-4 SPO2654 K00762 Uridine monophosphate biosynthesis, glutamine (+ PRPP) => UMP Orotate phosphoribosyltransferase (PyrE) (PDB:4WML)
Ruegeria pomeroyi DSS-3 2651 8.02732E-5 4.40508E-4 5.8867E-4 3.73132E-4 SPO2655 K02314 nan Replicative DNA helicase (DnaB) (PDB:1B79)
Ruegeria pomeroyi DSS-3 2652 SPO2656 K21645 nan DNA-binding transcriptional regulator, LysR family (LysR) (PDB:2FYI)
Ruegeria pomeroyi DSS-3 2653 SPO2657 K17950 nan 1-aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase, PLP-dependent ACC family (Acd) (PDB:4D97)
Ruegeria pomeroyi DSS-3 2654 7.65406E-6 3.06162E-5 SPO2658 K10001 nan ABC-type amino acid transport/signal transduction system, periplasmic component/domain (HisJ) (PDB:1GGG)
Ruegeria pomeroyi DSS-3 2655 SPO2659 K10003 nan ABC-type amino acid transport system, permease component (HisM) (PDB:4YMS)
Ruegeria pomeroyi DSS-3 2656 SPO2660 K10002 nan ABC-type amino acid transport system, permease component (HisM) (PDB:4YMS)
Ruegeria pomeroyi DSS-3 2657 SPO2661 K10004 nan ABC-type polar amino acid transport system, ATPase component (GlnQ) (PDB:4YMS)
Ruegeria pomeroyi DSS-3 2658 SPO2662 K01779 nan Amino acid racemase YgeA (RacX) (PDB:5ELL)
Ruegeria pomeroyi DSS-3 2659 SPO2663 K01744 nan Aspartate ammonia-lyase (AspA) (PDB:6WNG)
Ruegeria pomeroyi DSS-3 2660 SPO2664 K02028 nan ABC-type polar amino acid transport system, ATPase component (GlnQ) (PDB:4YMS)
Ruegeria pomeroyi DSS-3 2661 SPO2665 K02029 nan ABC-type amino acid transport system, permease component (HisM) (PDB:4YMS)
Ruegeria pomeroyi DSS-3 2662 SPO2666 K02029 nan ABC-type amino acid transport system, permease component (HisM) (PDB:4YMS)
Ruegeria pomeroyi DSS-3 2663 SPO2667 K02030 nan ABC-type amino acid transport/signal transduction system, periplasmic component/domain (HisJ) (PDB:1GGG)
Ruegeria pomeroyi DSS-3 2664 SPO2668 K21645 nan DNA-binding transcriptional regulator, LysR family (LysR) (PDB:2FYI)
Ruegeria pomeroyi DSS-3 2665 1.73243E-5 3.8527E-5 1.73243E-6 9.81707E-6 SPO2669 nan Isopenicillin N synthase and related dioxygenases (PcbC) (PDB:1BK0)
Ruegeria pomeroyi DSS-3 2666 2.27975E-4 0.001229969 3.79715E-4 3.76802E-4 SPO2670 K01775 nan Alanine racemase (Alr) (PDB:1BD0)
Ruegeria pomeroyi DSS-3 2667 8.44891E-6 SPO2671 K02066 nan Permease subunit MlaE of the ABC-type intermembrane phospholipid transporter Mla (MlaE) (PDB:6IC4)
Ruegeria pomeroyi DSS-3 2668 9.92494E-5 3.39606E-4 1.94087E-4 8.38102E-5 SPO2672 K02065 nan ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla (MlaF) (PDB:6IC4)
Ruegeria pomeroyi DSS-3 2669 SPO2673 K03808 nan Intermembrane transporter PqiABC subunit PqiA (PqiA) (PUBMED:27795327)
Ruegeria pomeroyi DSS-3 2670 1.74573E-4 7.36509E-5 6.26363E-5 1.3295E-4 SPO2674 K04485 nan DNA repair protein RadA/Sms, contains AAA+ ATPase domain (Sms) (PDB:5LKM) (PUBMED:30877841)
Ruegeria pomeroyi DSS-3 2671 4.77547E-5 4.39343E-6 3.38262E-5 1.19387E-5 SPO2675 K03558 nan Colicin V production accessory protein CvpA, regulator of purF expression and biofilm formation (CvpA) (PUBMED:27795353)
Ruegeria pomeroyi DSS-3 2672 SPO2676 nan
Ruegeria pomeroyi DSS-3 2673 0.001065295 0.004536537 0.001325875 0.001425997 SPO2677 K00764 Inosine monophosphate biosynthesis, PRPP + glutamine => IMP Glutamine phosphoribosylpyrophosphate amidotransferase (PurF) (PDB:1ECB)
Ruegeria pomeroyi DSS-3 2674 SPO2678 nan
Ruegeria pomeroyi DSS-3 2675 1.48843E-4 2.56504E-4 2.99397E-4 1.96747E-4 SPO2679 nan NADP-dependent 3-hydroxy acid dehydrogenase YdfG (YdfG) (PDB:3P19)
Ruegeria pomeroyi DSS-3 2676 2.68705E-4 9.94055E-4 4.87069E-4 5.87752E-4 SPO2680 K06923 nan Predicted ATPase, AAA+ superfamily (Atu1564)
Ruegeria pomeroyi DSS-3 2677 7.04075E-6 SPO2681 K03118 nan Twin-arginine protein secretion pathway component TatC (TatC) (PDB:4B4A)
Ruegeria pomeroyi DSS-3 2678 9.57451E-5 3.28826E-4 5.79288E-4 3.29989E-4 SPO2682 K03117 nan Twin-arginine protein secretion pathway components TatA and TatB (TatA) (PDB:2L16)
Ruegeria pomeroyi DSS-3 2679 1.93373E-5 1.84931E-4 1.28915E-4 1.90795E-4 SPO2683 K03116 nan Twin-arginine protein secretion pathway components TatA and TatB (TatA) (PDB:2L16)
Ruegeria pomeroyi DSS-3 2680 SPO2684 nan
Ruegeria pomeroyi DSS-3 2681 2.48497E-6 SPO2685 nan Predicted DNA-binding transcriptional regulator YobV, contains HTH and WYL domains (YobV)
Ruegeria pomeroyi DSS-3 2682 0.003085665 0.011508449 0.004560774 0.003290451 SPO2686 K06194 nan Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain (NlpD) (PDB:2GU1)
Ruegeria pomeroyi DSS-3 2683 3.11627E-4 1.387E-4 2.09454E-4 2.12009E-4 SPO2687 K00573 nan Protein-L-isoaspartate O-methyltransferase (Pcm) (PDB:3LBF) (PUBMED:24909784)
Ruegeria pomeroyi DSS-3 2684 2.46074E-4 1.35633E-4 1.4504E-4 3.05569E-4 SPO2688 K03787 nan Broad specificity polyphosphatase and 5'/3'-nucleotidase SurE (SurE) (PDB:2V4N)
Ruegeria pomeroyi DSS-3 2685 1.69268E-4 1.4602E-4 1.1435E-4 1.06827E-4 SPO2689 nan ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component (PotA) (PDB:1Z47)
Ruegeria pomeroyi DSS-3 2686 7.58839E-5 2.16385E-4 1.38729E-4 1.46552E-4 SPO2690 K07755 nan 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase (UbiG) (PDB:1BHJ)
Ruegeria pomeroyi DSS-3 2687 5.52164E-5 1.94012E-5 3.83032E-5 5.07394E-5 SPO2691 nan 3-methylpurine DNA glycosylase AlkC (AlkC)
Ruegeria pomeroyi DSS-3 2688 7.63338E-4 8.42742E-4 0.001487801 9.07524E-4 SPO2692 nan NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family (FabG) (PDB:6L1H)
Ruegeria pomeroyi DSS-3 2689 4.33132E-5 1.659E-5 1.64536E-4 4.79442E-5 SPO2693 nan Ca2+-binding protein, RTX toxin-related (PDB:1AF0) (PUBMED:15135544)
Ruegeria pomeroyi DSS-3 2690 SPO2694 nan Cytochrome c556 (CytC556) (PDB:1E83)
Ruegeria pomeroyi DSS-3 2691 3.14623E-4 8.01013E-4 2.96317E-4 3.51406E-4 SPO2695 K02837 nan Peptide chain release factor RF-3 (PrfC) (PDB:3UOQ)
Ruegeria pomeroyi DSS-3 2692 SPO2696 nan CubicO group peptidase, beta-lactamase class C family (AmpC) (PDB:1BLS)
Ruegeria pomeroyi DSS-3 2693 SPO2697 K24012 nan Acyl-CoA synthetase (NDP forming) (PatZN) (PDB:4YAK) (PUBMED:26251518)
Ruegeria pomeroyi DSS-3 2694 5.69097E-6 SPO2698 K00249 beta-Oxidation Acyl-CoA dehydrogenase related to the alkylation response protein AidB (CaiA) (PDB:1BUC)
Ruegeria pomeroyi DSS-3 2695 SPO2699 K02053 nan ABC-type spermidine/putrescine transport system, permease component II (PotC)
Ruegeria pomeroyi DSS-3 2696 SPO2700 K02054 nan ABC-type spermidine/putrescine transport system, permease component I (PotB)
Ruegeria pomeroyi DSS-3 2697 SPO2701 K02055 nan Spermidine/putrescine-binding periplasmic protein (PotD) (PDB:1POT)
Ruegeria pomeroyi DSS-3 2698 SPO2702 K02052 nan ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component (PotA) (PDB:1Z47)
Ruegeria pomeroyi DSS-3 2699 SPO2703 K18013 nan Uncharacterized conserved protein, DUF849 family (PDB:3C6C)
Ruegeria pomeroyi DSS-3 2700 SPO2704 nan Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH domain (GlxA)
Ruegeria pomeroyi DSS-3 2701 SPO2705 K17735 nan 3-hydroxyacyl-CoA dehydrogenase (FadB) (PDB:5ZQZ)
Ruegeria pomeroyi DSS-3 2702 SPO2706 K08299 beta-Oxidation Enoyl-CoA hydratase/carnithine racemase (CaiD) (PDB:1DCI)
Ruegeria pomeroyi DSS-3 2703 1.59645E-6 6.39429E-5 6.3858E-6 SPO2707 K23464 nan Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase) (SsuD) (PDB:1BRL)
Ruegeria pomeroyi DSS-3 2704 SPO2708 K23463 nan Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenase (AdhE) (PDB:1A4S)
Ruegeria pomeroyi DSS-3 2705 SPO2709 K09022 nan Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family (RidA) (PDB:1J7H) (PUBMED:22094463;32205462)
Ruegeria pomeroyi DSS-3 2706 SPO2710 K23465 Catechol ortho-cleavage, catechol => 3-oxoadipate 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase MenH and related esterases, alpha/beta hydrolase fold (MenH) (PDB:4MYS)
Ruegeria pomeroyi DSS-3 2707 SPO2711 K23462 nan Crotonobetainyl-CoA:carnitine CoA-transferase CaiB and related acyl-CoA transferases (CaiB) (PDB:1P5H)!!!FMN reductase RutF, DIM6/NTAB family (RutF) (PDB:1EJE)
Ruegeria pomeroyi DSS-3 2708 1.83059E-4 1.16759E-4 1.87546E-4 2.03698E-4 SPO2712 nan
Ruegeria pomeroyi DSS-3 2709 2.90179E-6 8.42299E-7 SPO2713 K03070 nan Preprotein translocase subunit SecA (ATPase, RNA helicase) (SecA) (PDB:2FSF)
Ruegeria pomeroyi DSS-3 2710 3.07233E-6 1.92021E-6 SPO2714 K16922 nan Multidrug efflux pump subunit AcrA (membrane-fusion protein) (AcrA) (PDB:1T5E)
Ruegeria pomeroyi DSS-3 2711 1.28171E-4 1.53913E-4 2.64057E-5 1.39149E-4 SPO2715 nan Multidrug resistance efflux pump EmrA (EmrA) (PDB:4TKO)
Ruegeria pomeroyi DSS-3 2712 2.11223E-6 6.78585E-8 SPO2716 nan Ca2+-binding protein, RTX toxin-related (PDB:1AF0) (PUBMED:15135544)!!!Autotransporter adhesin (Hia) (PDB:2GR7)
Ruegeria pomeroyi DSS-3 2713 1.57361E-4 5.99884E-4 1.3659E-4 2.85151E-4 SPO2717 nan
Ruegeria pomeroyi DSS-3 2714 1.68978E-5 SPO2718 nan Multidrug resistance efflux pump EmrA (EmrA) (PDB:4TKO)
Ruegeria pomeroyi DSS-3 2715 1.97546E-6 SPO2719 nan Predicted restriction endonuclease
Ruegeria pomeroyi DSS-3 2716 SPO2720 nan
Ruegeria pomeroyi DSS-3 2717 1.47002E-4 6.33956E-4 9.66148E-4 1.43304E-4 SPO2721 nan
Ruegeria pomeroyi DSS-3 2718 SPO2722 nan
Ruegeria pomeroyi DSS-3 2719 1.53728E-4 1.95017E-4 1.62916E-4 2.53032E-4 SPO2723 nan
Ruegeria pomeroyi DSS-3 2720 1.45371E-4 6.78686E-5 1.3336E-4 9.44292E-5 SPO2723a nan
Ruegeria pomeroyi DSS-3 2721 1.47699E-4 7.63931E-4 1.10026E-4 1.82516E-4 SPO2724 nan
Ruegeria pomeroyi DSS-3 2722 SPO2725 nan
Ruegeria pomeroyi DSS-3 2723 SPO2726 nan
Ruegeria pomeroyi DSS-3 2724 SPO2729 nan Cell wall-associated hydrolase, NlpC_P60 family (NlpC) (PDB:2EVR)
Ruegeria pomeroyi DSS-3 2725 SPO2730 nan Uncharacterized conserved protein, DUF2163 domain
Ruegeria pomeroyi DSS-3 2726 SPO2731 K07492 nan Transposase
Ruegeria pomeroyi DSS-3 2727 4.97007E-4 0.001854519 5.37992E-4 4.58056E-4 SPO2733 K03427 nan Type I restriction-modification system, DNA methylase subunit (HsdM) (PDB:2AR0) (PUBMED:26872910)
Ruegeria pomeroyi DSS-3 2728 2.02462E-5 5.54857E-5 1.22321E-5 2.10898E-5 SPO2734 K01154 nan Restriction endonuclease S subunit (HsdS) (PDB:1YDX)
Ruegeria pomeroyi DSS-3 2729 3.71561E-4 9.06942E-4 2.06775E-4 2.08399E-4 SPO2735 K01153 nan Type I site-specific restriction-modification system, R (restriction) subunit and related helicases ... (PDB:2W00)
Ruegeria pomeroyi DSS-3 2730 2.31721E-6 1.36442E-5 3.70754E-5 SPO3899 nan UTP pyrophosphatase, metal-dependent hydrolase family (YgjP) (PDB:4JIU) (PUBMED:27941785)
Ruegeria pomeroyi DSS-3 2731 5.36858E-5 1.5255E-4 2.55227E-5 1.5255E-5 SPO2736 nan
Ruegeria pomeroyi DSS-3 2732 SPO_tRNA-Ser-4 nan
Ruegeria pomeroyi DSS-3 2733 5.43556E-4 6.79093E-4 0.001636291 7.13495E-4 SPO2738 K03642 nan Cell division protein FtsN (FtsN) (PDB:1UTA)
Ruegeria pomeroyi DSS-3 2734 0.003139378 0.008123434 0.002674652 0.003977301 SPO2739 K07258 nan D-alanyl-D-alanine carboxypeptidase (DacC) (PDB:1HD8)
Ruegeria pomeroyi DSS-3 2735 3.14932E-4 8.34182E-4 4.19909E-4 2.44658E-4 SPO2740 K00943 Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP Thymidylate kinase (Tmk) (PDB:3LV8)
Ruegeria pomeroyi DSS-3 2736 3.31274E-4 2.4599E-4 2.64529E-4 5.05009E-4 SPO2741 K02341 nan DNA polymerase III, delta prime subunit (HolB) (PDB:1A5T)
Ruegeria pomeroyi DSS-3 2737 1.17536E-4 9.27256E-5 1.18888E-4 1.33748E-4 SPO2742 K03424 nan 3'->5' ssDNA/RNA exonuclease TatD (TatD) (PDB:1J6O) (PUBMED:10747959;25114049)
Ruegeria pomeroyi DSS-3 2738 1.1252E-4 8.11935E-5 1.58285E-4 2.72525E-4 SPO2743 K06167 nan Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase (PhnP) (PDB:6B9V)
Ruegeria pomeroyi DSS-3 2739 SPO2744 K13936 nan Predicted permease, AEC (auxin efflux carrier) family (YfdV)
Ruegeria pomeroyi DSS-3 2740 8.61457E-6 1.68978E-5 1.93828E-5 6.46093E-6 SPO2745 K03795 Cobalamin biosynthesis, anaerobic, uroporphyrinogen III => sirohydrochlorin => cobyrinate a,c-diamide Sirohydrochlorin ferrochelatase (SirB) (PDB:1TJN)
Ruegeria pomeroyi DSS-3 2741 0.001057939 0.002140631 4.57222E-4 7.301E-4 SPO2746 nan Uncharacterized conserved protein, contains caspase domain (PDB:3UO8)
Ruegeria pomeroyi DSS-3 2742 1.39228E-5 SPO2747 nan GGDEF domain, diguanylate cyclase (c-di-GMP synthetase) or its enzymatically inactive variants (GGDEF) (PDB:6D9M)
Ruegeria pomeroyi DSS-3 2743 2.8163E-6 1.12652E-5 SPO2748 nan
Ruegeria pomeroyi DSS-3 2744 6.04004E-6 9.29238E-6 8.36313E-6 SPO2749 nan
Ruegeria pomeroyi DSS-3 2745 4.70876E-5 4.86223E-5 1.76358E-5 4.86748E-5 SPO2750 K14083 Methanogenesis, methylamine/dimethylamine/trimethylamine => methane Trimethylamine:corrinoid methyltransferase (MttB2)
Ruegeria pomeroyi DSS-3 2746 1.94251E-4 6.199E-4 2.86181E-4 1.9585E-4 SPO2751 K01091 nan Phosphoglycolate phosphatase, HAD superfamily (Gph) (PDB:2NYV)
Ruegeria pomeroyi DSS-3 2747 SPO2752 nan
Ruegeria pomeroyi DSS-3 2748 1.1471E-4 1.1887E-6 SPO2753 K02488 nan Two-component response regulator, PleD family, consists of two REC domains and a diguanylate cyclase (GGDEF) domain (PleD) (PDB:1W25)
Ruegeria pomeroyi DSS-3 2749 1.40815E-5 1.40815E-5 3.52038E-6 SPO2754 nan Ni/Co/Cd-binding protein CnrX (heavy-metal resistance) (CnrX) (PUBMED:18992246)
Ruegeria pomeroyi DSS-3 2750 SPO2755 nan
Ruegeria pomeroyi DSS-3 2751 SPO2756 K03088 nan DNA-directed RNA polymerase specialized sigma subunit, sigma24 family (RpoE) (PDB:2Q1Z)
Ruegeria pomeroyi DSS-3 2752 SPO2757 nan
Ruegeria pomeroyi DSS-3 2753 SPO2758 nan Uncharacterized conserved protein, DUF983 family
Ruegeria pomeroyi DSS-3 2754 1.32037E-4 3.95478E-4 1.9786E-4 1.2931E-4 SPO2759 nan 8-oxo-dGTP pyrophosphatase MutT and related house-cleaning NTP pyrophosphohydrolases, NUDIX family (MutT) (PDB:4V14)
Ruegeria pomeroyi DSS-3 2755 4.79914E-4 0.001178024 7.88311E-4 4.99044E-4 SPO2760 K12574 nan mRNA degradation ribonuclease J1/J2 (RnjA) (PDB:3T3N)
Ruegeria pomeroyi DSS-3 2756 1.90834E-5 7.70827E-5 4.02872E-5 2.12038E-5 SPO2761 K03525 Coenzyme A biosynthesis, pantothenate => CoA Pantothenate kinase type III (CoaX) (PDB:2F9T)
Ruegeria pomeroyi DSS-3 2757 1.08071E-4 1.5255E-5 4.19052E-5 1.45566E-4 SPO2762 K03524 nan Biotin-(acetyl-CoA carboxylase) ligase (BirA2) (PDB:1BIA) (PUBMED:32188788)
Ruegeria pomeroyi DSS-3 2758 3.48958E-5 2.39837E-4 1.14412E-6 2.17384E-5 SPO2763 K00343 NADH:quinone oxidoreductase, prokaryotes NADH:ubiquinone oxidoreductase subunit 2 (chain N) (NuoN) (PDB:4HE8)
Ruegeria pomeroyi DSS-3 2759 1.71284E-5 1.31079E-4 9.63472E-6 2.74768E-5 SPO2764 K00342 NADH:quinone oxidoreductase, prokaryotes NADH:ubiquinone oxidoreductase subunit 4 (chain M) (NuoM) (PDB:6HUM)
Ruegeria pomeroyi DSS-3 2760 4.6469E-5 1.92289E-5 9.61446E-6 SPO2765 K00341 NADH:quinone oxidoreductase, prokaryotes Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit (NuoL) (PDB:3RKO)
Ruegeria pomeroyi DSS-3 2761 1.75737E-5 2.17497E-5 SPO2766 K00340 NADH:quinone oxidoreductase, prokaryotes NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) (NuoK) (PDB:4HE8)
Ruegeria pomeroyi DSS-3 2762 1.86721E-4 8.07797E-6 2.56283E-4 1.4004E-4 SPO2767 K00339 NADH:quinone oxidoreductase, prokaryotes NADH:ubiquinone oxidoreductase subunit 6 (chain J) (NuoJ) (PDB:4HE8)
Ruegeria pomeroyi DSS-3 2763 2.94344E-4 3.60302E-4 3.02904E-4 4.60942E-4 SPO2768 K01607 nan Uncharacterized conserved protein YurZ, alkylhydroperoxidase/carboxymuconolactone decarboxylase family (YurZ) (PDB:3BEY)
Ruegeria pomeroyi DSS-3 2764 1.55822E-4 1.02219E-4 2.52103E-4 2.97709E-4 SPO2769 nan
Ruegeria pomeroyi DSS-3 2765 0.001153611 0.001459522 0.002119697 0.001529218 SPO2770 K00338 NADH:quinone oxidoreductase, prokaryotes Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) (NuoI) (PDB:1B0P)
Ruegeria pomeroyi DSS-3 2766 6.96142E-5 2.22387E-5 3.86746E-5 6.96142E-5 SPO2771 nan
Ruegeria pomeroyi DSS-3 2767 2.54692E-5 2.04886E-4 3.97956E-6 1.85713E-5 SPO2772 K00337 NADH:quinone oxidoreductase, prokaryotes NADH:ubiquinone oxidoreductase subunit 1 (chain H) (NuoH) (PDB:6HUM)
Ruegeria pomeroyi DSS-3 2768 SPO2773 nan
Ruegeria pomeroyi DSS-3 2769 0.00626178 0.016947823 0.012058034 0.010613384 SPO2774 K00336 NADH:quinone oxidoreductase, prokaryotes NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) (NuoG) (PDB:1C4A)
Ruegeria pomeroyi DSS-3 2770 1.63446E-5 6.71486E-5 1.85239E-5 3.26892E-6 SPO2775 nan
Ruegeria pomeroyi DSS-3 2771 9.36199E-4 4.52519E-4 0.001166104 0.001180518 SPO2776 nan
Ruegeria pomeroyi DSS-3 2772 0.004281562 0.009882057 0.005679086 0.005579081 SPO2777 K00335 NADH:quinone oxidoreductase, prokaryotes NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit (chain F) (NuoF) (PDB:2FUG)
Ruegeria pomeroyi DSS-3 2773 SPO2778 nan
Ruegeria pomeroyi DSS-3 2774 1.48427E-5 2.69489E-5 SPO2779 nan
Ruegeria pomeroyi DSS-3 2775 0.006660452 0.009661112 0.012989716 0.008484858 SPO2780 K00334 NADH:quinone oxidoreductase, prokaryotes NADH:ubiquinone oxidoreductase 24 kD subunit (chain E) (NuoE) (PDB:5XF9)!!!Predicted 5' DNA nuclease, flap endonuclease-1-like, helix-3-turn-helix (H3TH) domain (H3TH)
Ruegeria pomeroyi DSS-3 2776 3.01249E-4 2.06493E-4 1.10191E-4 4.3721E-4 SPO2781 nan
Ruegeria pomeroyi DSS-3 2777 0.001662453 0.002629777 0.002090044 0.002185868 SPO2782 K00333 NADH:quinone oxidoreductase, prokaryotes NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) (NuoD) (PDB:2FUG)
Ruegeria pomeroyi DSS-3 2778 SPO2783 nan
Ruegeria pomeroyi DSS-3 2779 0.002474051 0.001330614 0.004050194 0.002586632 SPO2784 K00332 NADH:quinone oxidoreductase, prokaryotes NADH:ubiquinone oxidoreductase 27 kD subunit (chain C) (NuoC)
Ruegeria pomeroyi DSS-3 2780 0.001068882 0.002004823 7.82916E-4 0.001051817 SPO2785 K00331 NADH:quinone oxidoreductase, prokaryotes NADH:ubiquinone oxidoreductase 20 kD subunit (chain B) or related Fe-S oxidoreductase (NuoB) (PDB:2FUG) (PUBMED:25941396)
Ruegeria pomeroyi DSS-3 2781 2.4408E-5 4.53867E-6 SPO2786 K00330 NADH:quinone oxidoreductase, prokaryotes NADH:ubiquinone oxidoreductase subunit 3 (chain A) (NuoA) (PDB:3RKO)
Ruegeria pomeroyi DSS-3 2782 1.36247E-4 3.29664E-4 6.7774E-5 2.24982E-4 SPO2787 K13766 Leucine degradation, leucine => acetoacetate + acetyl-CoA Enoyl-CoA hydratase/carnithine racemase (CaiD) (PDB:1DCI)
Ruegeria pomeroyi DSS-3 2783 9.37858E-4 5.69036E-4 5.2404E-4 9.76533E-4 SPO2788 K01640 Ketone body biosynthesis, acetyl-CoA => acetoacetate/3-hydroxybutyrate/acetone Isopropylmalate/homocitrate/citramalate synthases (LeuA) (PDB:4JN6)
Ruegeria pomeroyi DSS-3 2784 2.0988E-4 0.001420769 1.98953E-4 1.59787E-4 SPO2789 K01968 Leucine degradation, leucine => acetoacetate + acetyl-CoA Acetyl/propionyl-CoA carboxylase, alpha subunit (PccA) (PDB:3U9S)
Ruegeria pomeroyi DSS-3 2785 SPO3900 K01174 nan Endonuclease YncB, thermonuclease family (YncB)
Ruegeria pomeroyi DSS-3 2786 1.74832E-5 1.5474E-4 5.55349E-5 2.63962E-5 SPO2790 K01969 Leucine degradation, leucine => acetoacetate + acetyl-CoA Acetyl-CoA carboxylase, carboxyltransferase component (MmdA) (PDB:1OD2)
Ruegeria pomeroyi DSS-3 2787 4.30729E-6 SPO2791 nan Acyl-coenzyme A synthetase/AMP-(fatty) acid ligase (Acs) (PDB:4B2O) (PUBMED:14638756)
Ruegeria pomeroyi DSS-3 2788 SPO2792 K07275 nan Outer membrane protein OmpW (OmpW) (PDB:2F1T)
Ruegeria pomeroyi DSS-3 2789 8.01773E-5 3.78974E-4 1.25824E-4 5.77087E-5 SPO2793 K00253 beta-Oxidation Acyl-CoA dehydrogenase related to the alkylation response protein AidB (CaiA) (PDB:1BUC)
Ruegeria pomeroyi DSS-3 2790 SPO2794 nan
Ruegeria pomeroyi DSS-3 2791 2.84297E-5 1.08584E-4 1.34059E-5 2.31136E-5 SPO2795 nan dTDP-4-amino-4,6-dideoxygalactose transaminase (WecE) (PDB:4PIW) (PUBMED:15271350)
Ruegeria pomeroyi DSS-3 2792 9.23619E-5 1.07828E-4 4.07724E-5 1.34798E-4 SPO2796 K01091 nan Phosphoglycolate phosphatase, HAD superfamily (Gph) (PDB:2NYV)
Ruegeria pomeroyi DSS-3 2793 9.25672E-4 0.005196077 9.18959E-4 0.001130495 SPO2797 K04042 UDP-N-acetyl-D-glucosamine biosynthesis, prokaryotes, glucose => UDP-GlcNAc Bifunctional protein GlmU, N-acetylglucosamine-1-phosphate-uridyltransferase/glucosamine-1-phosphate-acetyltransferase (GlmU) (PDB:3FWW)
Ruegeria pomeroyi DSS-3 2794 7.34648E-5 2.80535E-4 9.31355E-5 8.43036E-5 SPO2798 nan 3-methyladenine DNA glycosylase AlkD (AlkD) (PDB:3JX7)
Ruegeria pomeroyi DSS-3 2795 2.00819E-4 5.67485E-4 1.53552E-4 1.99453E-4 SPO2799 K03639 Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor GTP 3',8-cyclase (molybdenum cofactor biosynthesis protein MoaA) (MoaA) (PDB:1TV7)
Ruegeria pomeroyi DSS-3 2796 2.60606E-5 7.67783E-5 2.373E-5 2.96624E-5 SPO2800 K02527 KDO2-lipid A biosynthesis, Raetz pathway, LpxL-LpxM type 3-deoxy-D-manno-octulosonic-acid transferase (KdtA) (PDB:2XCI)
Ruegeria pomeroyi DSS-3 2797 3.20746E-5 6.26022E-5 2.55553E-5 1.14738E-5 SPO2801 K12989 nan Glycosyltransferase involved in cell wall bisynthesis (RfaB) (PDB:2IV7)
Ruegeria pomeroyi DSS-3 2798 1.017E-4 7.22626E-5 1.27255E-4 3.54645E-5 SPO2802 K07335 nan Lipoprotein Med, regulator of KinD/Spo0A, PBP1-ABC superfamily, includes NupN (Med) (PDB:2FQW) (PUBMED:21622736)
Ruegeria pomeroyi DSS-3 2799 4.63125E-5 1.08748E-6 4.34993E-6 SPO2803 K23537 nan ABC-type guanosine uptake system NupNOPQ, ATPase component NupO (NupO) (PUBMED:21926227)
Ruegeria pomeroyi DSS-3 2800 SPO2804 K23535 nan ABC-type guanosine uptake system NupNOPQ, permease component NupP (NupP) (PUBMED:21926227)
Ruegeria pomeroyi DSS-3 2801 SPO2805 K23536 nan ABC-type guanosine uptake system NupNOPQ, permease subunit NupQ (NupQ) (PUBMED:21926227)
Ruegeria pomeroyi DSS-3 2802 3.32062E-5 2.2963E-4 1.02173E-5 1.61773E-5 SPO2806 K01485 nan Cytosine/adenosine deaminase or related metal-dependent hydrolase (SsnA) (PDB:3O7U)
Ruegeria pomeroyi DSS-3 2803 SPO2807 nan
Ruegeria pomeroyi DSS-3 2804 0.001244522 0.004050243 5.95535E-4 0.001616317 SPO2808 K01451 nan Metal-dependent amidase/aminoacylase/carboxypeptidase (AbgB) (PDB:3RAM) (PUBMED:17307853)
Ruegeria pomeroyi DSS-3 2805 1.8353E-4 8.56469E-4 2.40001E-5 1.76001E-4 SPO2809 K01451 nan Metal-dependent amidase/aminoacylase/carboxypeptidase (AbgB) (PDB:3RAM) (PUBMED:17307853)
Ruegeria pomeroyi DSS-3 2806 1.16364E-4 3.86477E-4 1.07376E-4 1.61774E-4 SPO2810 K01451 nan Metal-dependent amidase/aminoacylase/carboxypeptidase (AbgB) (PDB:3RAM) (PUBMED:17307853)
Ruegeria pomeroyi DSS-3 2807 5.23702E-5 5.4142E-5 5.16625E-5 8.44527E-5 SPO2811 K01451 nan Metal-dependent amidase/aminoacylase/carboxypeptidase (AbgB) (PDB:3RAM) (PUBMED:17307853)
Ruegeria pomeroyi DSS-3 2808 3.06436E-4 2.35349E-4 3.83576E-4 2.30712E-4 SPO2812 K01438 Ornithine biosynthesis, glutamate => ornithine Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase or related deacylase (ArgE) (PDB:1CG2)
Ruegeria pomeroyi DSS-3 2809 6.48226E-4 0.002596097 5.28544E-4 4.18885E-4 SPO2813 K02031 nan ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain (GsiA)
Ruegeria pomeroyi DSS-3 2810 0.026626071 0.12985794 0.042265687 0.022242224 SPO2814 K02035 nan ABC-type transport system, periplasmic component (DdpA) (PDB:3RQT)
Ruegeria pomeroyi DSS-3 2811 1.47541E-5 6.55736E-6 1.20219E-5 SPO2815 K02033 nan ABC-type dipeptide/oligopeptide/nickel transport system, permease component (DppB)
Ruegeria pomeroyi DSS-3 2812 2.26558E-5 1.06826E-4 2.26558E-5 SPO2816 K02034 nan ABC-type dipeptide/oligopeptide/nickel transport system, permease component (DppC)
Ruegeria pomeroyi DSS-3 2813 SPO2817 K07112 nan Uncharacterized membrane protein YedE/YeeE, contains two sulfur transport domains (YedE)
Ruegeria pomeroyi DSS-3 2814 1.28915E-6 1.6673E-4 7.30521E-6 SPO2818 nan Uncharacterized membrane-anchored protein
Ruegeria pomeroyi DSS-3 2815 7.71959E-4 4.34915E-4 0.001125989 4.80867E-4 SPO2819 K00325 nan NAD/NADP transhydrogenase beta subunit (PntB) (PDB:1D4O)
Ruegeria pomeroyi DSS-3 2816 0.014753276 0.012033551 0.009200234 0.010199186 SPO2820 K00324 nan NAD/NADP transhydrogenase alpha subunit (PntA) (PDB:1F8G)
Ruegeria pomeroyi DSS-3 2817 3.95409E-5 2.39575E-5 SPO2821 nan Protein-S-isoprenylcysteine O-methyltransferase Ste14 (STE14) (PDB:5V7P)
Ruegeria pomeroyi DSS-3 2818 SPO2822 K05555 Type II polyketide backbone biosynthesis, acyl-CoA + malonyl-CoA => polyketide Glyoxylase or a related metal-dependent hydrolase, beta-lactamase superfamily II (GloB) (PDB:1QH3) (PUBMED:25670698)
Ruegeria pomeroyi DSS-3 2819 4.50327E-5 7.48511E-4 6.51693E-5 3.29507E-5 SPO2823 nan NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family (FabG) (PDB:6L1H)
Ruegeria pomeroyi DSS-3 2820 2.58155E-4 3.05907E-4 1.37865E-4 2.47427E-4 SPO2824 K01556 Tryptophan metabolism, tryptophan => kynurenine => 2-aminomuconate Kynureninase (Bna5)
Ruegeria pomeroyi DSS-3 2821 SPO2825 nan DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA (AcrR) (PDB:2QOP)
Ruegeria pomeroyi DSS-3 2822 2.4408E-5 SPO2826 K07302 nan Aldehyde, CO, or xanthine dehydrogenase, Fe-S subunit, CoxS/CutS family (CutS) (PDB:1FFU) (PUBMED:21175741)
Ruegeria pomeroyi DSS-3 2823 8.57632E-5 4.44416E-4 1.44779E-4 1.24903E-4 SPO2827 K07303 nan Aldehyde, CO or xanthine dehydrogenase, Mo-binding subunit (CoxL) (PDB:1DGJ) (PUBMED:10095793)
Ruegeria pomeroyi DSS-3 2824 SPO2828 K01406 nan Ca2+-binding protein, RTX toxin-related (PDB:1AF0) (PUBMED:15135544)
Ruegeria pomeroyi DSS-3 2825 1.16598E-6 1.16598E-6 SPO2829 K08659 nan Dipeptidase (PepD) (PDB:5IAU)
Ruegeria pomeroyi DSS-3 2826 SPO2830 nan Predicted amidohydrolase YtcJ (YtcJ) (PDB:3ICJ)
Ruegeria pomeroyi DSS-3 2827 SPO2831 K02032 nan ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component (DppD) (PDB:4FWI)
Ruegeria pomeroyi DSS-3 2828 SPO2832 K02031 nan ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component (DppD) (PDB:4FWI)
Ruegeria pomeroyi DSS-3 2829 SPO2833 K02034 nan ABC-type dipeptide/oligopeptide/nickel transport system, permease component (DppC)
Ruegeria pomeroyi DSS-3 2830 SPO2834 K02033 nan ABC-type dipeptide/oligopeptide/nickel transport system, permease component (DppB)
Ruegeria pomeroyi DSS-3 2831 SPO2835 K02035 nan ABC-type transport system, periplasmic component (DdpA) (PDB:3RQT)
Ruegeria pomeroyi DSS-3 2832 8.35253E-6 4.22445E-6 1.04407E-5 8.35253E-6 SPO2836 nan Transcriptional regulator, contains XRE-family HTH domain (HipB) (PDB:1ADR)
Ruegeria pomeroyi DSS-3 2833 1.90834E-5 2.0078E-5 3.18057E-5 1.55494E-5 SPO2837 K07010 nan Gamma-glutamyl-gamma-aminobutyrate hydrolase PuuD (putrescine degradation), contains GATase1-like domain (PuuD) (PDB:1L9X)
Ruegeria pomeroyi DSS-3 2834 SPO2838 K11477 nan Heme-binding protein HbpS, GlcG/HbpS family (GlcG) (PDB:2A2L) (PUBMED:19244623;25342754)
Ruegeria pomeroyi DSS-3 2835 0.001998551 0.004933416 7.23021E-4 0.001490592 SPO2839 K01638 Glyoxylate cycle Malate synthase (AceB) (PDB:1D8C)
Ruegeria pomeroyi DSS-3 2836 SPO2840 nan GGDEF domain, diguanylate cyclase (c-di-GMP synthetase) or its enzymatically inactive variants (GGDEF) (PDB:6D9M)
Ruegeria pomeroyi DSS-3 2837 9.88522E-4 0.002379253 4.83708E-4 9.72801E-4 SPO2841 K01256 nan Aminopeptidase N, contains DUF3458 domain (PepN) (PDB:6ATK) (PUBMED:24123841)
Ruegeria pomeroyi DSS-3 2838 1.11622E-4 6.10199E-6 1.45108E-4 7.81353E-5 SPO2842 nan NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family (FabG) (PDB:6L1H)
Ruegeria pomeroyi DSS-3 2839 3.45396E-6 3.45396E-6 SPO2843 nan
Ruegeria pomeroyi DSS-3 2840 SPO2844 nan
Ruegeria pomeroyi DSS-3 2841 SPO2845 nan
Ruegeria pomeroyi DSS-3 2842 1.96135E-6 SPO2846 nan Nucleoside-diphosphate-sugar epimerase (WcaG) (PDB:2X4G)
Ruegeria pomeroyi DSS-3 2843 0.003193535 0.011552064 0.003390424 0.003283064 SPO2847 K02434 nan Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (GatB) (PDB:3H0M)
Ruegeria pomeroyi DSS-3 2844 5.72715E-4 0.001536749 0.001265726 0.001410082 SPO2848 nan
Ruegeria pomeroyi DSS-3 2845 2.419E-4 1.09783E-4 6.53784E-4 7.03908E-4 SPO2849 K05527 nan DNA-binding global transcriptional regulator BolA, affects cell shape, cell division and biofilm formation (BolA) (PDB:2DHM) (PUBMED:19111750;2569159)
Ruegeria pomeroyi DSS-3 2846 7.58453E-4 0.001056113 3.35017E-4 8.0333E-4 SPO2850 nan DnaJ-class molecular chaperone with C-terminal Zn finger domain (DnaJ) (PDB:1BQ0)
Ruegeria pomeroyi DSS-3 2847 SPO2851 nan Ca2+-binding protein, RTX toxin-related (PDB:1AF0) (PUBMED:15135544)
Ruegeria pomeroyi DSS-3 2848 SPO2852 nan Protein-S-isoprenylcysteine O-methyltransferase Ste14 (STE14) (PDB:5V7P)
Ruegeria pomeroyi DSS-3 2849 0.005750472 0.015637517 0.003490411 0.006613587 SPO2853 K09882 Cobalamin biosynthesis, aerobic, uroporphyrinogen III => precorrin 2 => cobyrinate a,c-diamide MoxR-like ATPase (MoxR) (PDB:2R44)
Ruegeria pomeroyi DSS-3 2850 SPO2854 K01174 nan Endonuclease YncB, thermonuclease family (YncB)
Ruegeria pomeroyi DSS-3 2851 5.76858E-4 0.004530625 6.9299E-4 6.89476E-4 SPO2855 K09883 Cobalamin biosynthesis, aerobic, uroporphyrinogen III => precorrin 2 => cobyrinate a,c-diamide Cobalamin biosynthesis cobaltochelatase CobT subunit (CobT2)
Ruegeria pomeroyi DSS-3 2852 SPO2856 nan
Ruegeria pomeroyi DSS-3 2853 0.002969344 0.009308973 0.001984477 0.001947619 SPO2857 K01262 nan Xaa-Pro aminopeptidase (PepP) (PDB:1A16)
Ruegeria pomeroyi DSS-3 2854 6.47935E-4 1.68701E-4 0.001059819 2.48897E-4 SPO2858 nan Uncharacterized conserved protein, DUF427 family (PDB:3DJM)
Ruegeria pomeroyi DSS-3 2855 1.71618E-6 SPO2859 K00020 nan 3-hydroxyisobutyrate dehydrogenase or related beta-hydroxyacid dehydrogenase (MmsB) (PDB:1I36)
Ruegeria pomeroyi DSS-3 2856 SPO2860 K03566 nan DNA-binding transcriptional regulator, LysR family (LysR) (PDB:2FYI)
Ruegeria pomeroyi DSS-3 2857 5.20056E-5 5.44091E-5 6.24066E-5 6.93407E-5 SPO2861 nan Predicted metal-binding protein
Ruegeria pomeroyi DSS-3 2858 9.02782E-4 0.001880176 0.001462913 0.001717944 SPO2862 K02234 nan Zinc metallochaperone YeiR/ZagA and related GTPases, G3E family (YejR) (PDB:1NIJ) (PUBMED:19822009;31132310)
Ruegeria pomeroyi DSS-3 2859 3.25402E-5 3.90878E-4 1.11137E-4 5.42337E-5 SPO2863 K02230 Cobalamin biosynthesis, aerobic, uroporphyrinogen III => precorrin 2 => cobyrinate a,c-diamide Cobalamin biosynthesis protein CobN, Mg-chelatase (CobN) (PDB:4ZHJ)
Ruegeria pomeroyi DSS-3 2860 7.32239E-6 1.19385E-4 1.70856E-5 3.71001E-5 SPO2864 K02229 Cobalamin biosynthesis, aerobic, uroporphyrinogen III => precorrin 2 => cobyrinate a,c-diamide Sulfite reductase, beta subunit (hemoprotein) (CysI) (PDB:1AOP)
Ruegeria pomeroyi DSS-3 2861 4.11228E-4 9.62289E-4 7.05962E-4 5.30785E-4 SPO2865 K06042 Cobalamin biosynthesis, anaerobic, uroporphyrinogen III => sirohydrochlorin => cobyrinate a,c-diamide Precorrin-8X methylmutase CbiC/CobH (CobH) (PDB:1F2V)
Ruegeria pomeroyi DSS-3 2862 2.0424E-5 4.73702E-5 9.07734E-6 1.47507E-5 SPO2866 K03394 Cobalamin biosynthesis, anaerobic, uroporphyrinogen III => sirohydrochlorin => cobyrinate a,c-diamide Precorrin-2 methylase (CobF) (PDB:2QBU)
Ruegeria pomeroyi DSS-3 2863 1.07639E-4 2.76409E-5 5.93113E-5 3.3683E-5 SPO2867 K05934 Cobalamin biosynthesis, anaerobic, uroporphyrinogen III => sirohydrochlorin => cobyrinate a,c-diamide Precorrin-3B methylase (CobJ) (PDB:2ZVB)
Ruegeria pomeroyi DSS-3 2864 1.42786E-5 1.14999E-5 2.19672E-6 2.74589E-5 SPO2868 K05895 Cobalamin biosynthesis, anaerobic, uroporphyrinogen III => sirohydrochlorin => cobyrinate a,c-diamide Precorrin-6x reductase (CobK) (PDB:4X7G)
Ruegeria pomeroyi DSS-3 2865 3.44097E-5 1.18598E-4 1.00018E-4 5.09264E-5 SPO2869 K00595 Cobalamin biosynthesis, anaerobic, uroporphyrinogen III => sirohydrochlorin => cobyrinate a,c-diamide Precorrin-6B methylase 1 (CobL)!!!Precorrin-6B methylase 2 (CobL) (PDB:1F38)
Ruegeria pomeroyi DSS-3 2866 4.05132E-5 SPO2870 K02189 Cobalamin biosynthesis, anaerobic, uroporphyrinogen III => sirohydrochlorin => cobyrinate a,c-diamide
Ruegeria pomeroyi DSS-3 2867 1.68498E-4 9.30989E-4 4.84692E-4 3.89002E-4 SPO2871 K05936 Cobalamin biosynthesis, anaerobic, uroporphyrinogen III => sirohydrochlorin => cobyrinate a,c-diamide Precorrin-4 methylase (CobM) (PDB:4E16)
Ruegeria pomeroyi DSS-3 2868 3.49192E-4 7.40865E-4 9.63362E-4 5.07384E-4 SPO2872 K02224 Cobalamin biosynthesis, anaerobic, uroporphyrinogen III => sirohydrochlorin => cobyrinate a,c-diamide Cobyrinic acid a,c-diamide synthase (CobB)
Ruegeria pomeroyi DSS-3 2869 2.47357E-4 8.02645E-5 5.21191E-4 2.58704E-4 SPO2873 K02303 Siroheme biosynthesis, glutamyl-tRNA => siroheme Uroporphyrinogen-III methylase (siroheme synthase) (CysG) (PDB:1PJQ)
Ruegeria pomeroyi DSS-3 2870 1.25622E-4 1.55527E-5 1.67496E-4 1.81577E-4 SPO2874 K02228 Cobalamin biosynthesis, aerobic, uroporphyrinogen III => precorrin 2 => cobyrinate a,c-diamide Precorrin-2 methylase (CobF) (PDB:2QBU)
Ruegeria pomeroyi DSS-3 2871 SPO2875 nan
Ruegeria pomeroyi DSS-3 2872 SPO2876 nan Putative cobalt transporter membrane subunit CbtA (CbtA) (PUBMED:19915676)
Ruegeria pomeroyi DSS-3 2873 1.20551E-4 3.38728E-4 0.001639723 5.11228E-4 SPO2877 nan
Ruegeria pomeroyi DSS-3 2874 4.22445E-6 SPO2878 nan Predicted metal-binding protein
Ruegeria pomeroyi DSS-3 2875 7.20235E-6 4.93644E-6 1.62053E-5 2.34076E-5 SPO2879 K02623 nan DNA-binding transcriptional regulator, LysR family (LysR) (PDB:2FYI)
Ruegeria pomeroyi DSS-3 2876 SPO2880 K06989 NAD biosynthesis, aspartate => quinolinate => NAD L-aspartate dehydrogenase, NAD(P)-dependent (AspD) (PDB:1H2H) (PUBMED:12496312)
Ruegeria pomeroyi DSS-3 2877 SPO2881 K03520 nan Aldehyde, CO or xanthine dehydrogenase, Mo-binding subunit (CoxL) (PDB:1DGJ) (PUBMED:10095793)
Ruegeria pomeroyi DSS-3 2878 SPO2882 K01714 Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine 4-hydroxy-tetrahydrodipicolinate synthase/N-acetylneuraminate lyase (DapA) (PDB:2R91) (PUBMED:27574185)
Ruegeria pomeroyi DSS-3 2879 3.45898E-5 1.02436E-5 1.70288E-5 3.93791E-5 SPO2883 nan Acetolactate synthase large subunit or other thiamine pyrophosphate-requiring enzyme (IlvB) (PDB:1BFD)
Ruegeria pomeroyi DSS-3 2880 1.28463E-5 SPO2884 nan Uncharacterized conserved protein, DUF302 family (PDB:1J3M)
Ruegeria pomeroyi DSS-3 2881 1.98173E-4 2.32984E-4 3.45402E-4 2.83929E-4 SPO2885 K01652 Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine Acetolactate synthase large subunit or other thiamine pyrophosphate-requiring enzyme (IlvB) (PDB:1BFD)
Ruegeria pomeroyi DSS-3 2882 1.68765E-4 3.54719E-4 1.22655E-4 1.31416E-4 SPO2886 nan Crotonobetainyl-CoA:carnitine CoA-transferase CaiB and related acyl-CoA transferases (CaiB) (PDB:1P5H)
Ruegeria pomeroyi DSS-3 2883 3.9141E-5 4.57637E-4 2.6094E-4 1.79045E-4 SPO2887 K24942 nan
Ruegeria pomeroyi DSS-3 2884 5.38411E-6 SPO2888 nan Predicted acyltransferase (OpgC)
Ruegeria pomeroyi DSS-3 2885 4.07207E-5 0.003235824 6.73542E-4 4.54164E-4 SPO2889 K03670 nan Periplasmic glucan biosynthesis protein OpgG (MdoG) (PDB:1TXK)
Ruegeria pomeroyi DSS-3 2886 3.50353E-6 2.19358E-4 3.64951E-5 9.92667E-6 SPO2890 K03669 nan Membrane glycosyltransferase (MdoH)
Ruegeria pomeroyi DSS-3 2887 SPO2891 K03932 nan Acetyl xylan esterase AxeA and related esterases, LpqC family (LpqC) (PDB:2D80) (PUBMED:9291122)
Ruegeria pomeroyi DSS-3 2888 8.58094E-6 3.43237E-6 2.23104E-5 SPO2892 nan Rhodanese-related sulfurtransferase (PspE) (PDB:1TQ1)
Ruegeria pomeroyi DSS-3 2889 1.13349E-5 4.68628E-5 2.26699E-6 7.08435E-6 SPO2893 K05559 nan Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit (NuoL) (PDB:3RKO)!!!Multisubunit Na+/H+ antiporter, MnhB subunit (MnhB)
Ruegeria pomeroyi DSS-3 2890 SPO2894 K05560 nan Multisubunit Na+/H+ antiporter, MnhC subunit (MnhC) (PDB:6CFW)
Ruegeria pomeroyi DSS-3 2891 1.06637E-5 5.09263E-5 1.77728E-5 1.35073E-5 SPO2895 K05561 nan Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit (HyfB) (PDB:6CFW)
Ruegeria pomeroyi DSS-3 2892 2.8291E-5 4.22445E-5 5.32537E-5 1.63089E-4 SPO2896 K05562 nan Multisubunit Na+/H+ antiporter, MnhE subunit (MnhE) (PDB:6CFW)
Ruegeria pomeroyi DSS-3 2893 SPO2897 K05563 nan Multisubunit Na+/H+ antiporter, MnhF subunit (MnhF) (PDB:6CFW)
Ruegeria pomeroyi DSS-3 2894 3.86141E-5 1.5255E-4 1.07262E-4 SPO2898 K05564 nan Multisubunit Na+/H+ antiporter, MnhG subunit (MnhG) (PDB:6CFW)
Ruegeria pomeroyi DSS-3 2895 1.71857E-5 3.88973E-6 1.27301E-5 1.7313E-5 SPO2899 K01008 nan Selenophosphate synthase (SelD) (PDB:2YYE)!!!NADH dehydrogenase, FAD-containing subunit (Ndh) (PDB:5NA4)
Ruegeria pomeroyi DSS-3 2896 2.51053E-5 6.62871E-6 1.15066E-5 6.27633E-6 SPO2900 K06917 nan tRNA 2-selenouridine synthase SelU, contains rhodanese domain (SelU)
Ruegeria pomeroyi DSS-3 2897 1.61523E-5 2.23648E-5 SPO2901 nan ssDNA abasic site-binding protein YedK/HMCES, SRAP family (SRAP) (PDB:1ZN6) (PUBMED:30554877;31504793)
Ruegeria pomeroyi DSS-3 2898 1.31383E-5 1.99356E-5 2.36489E-5 2.36489E-5 SPO2902 K00799 nan Glutathione S-transferase (GstA) (PDB:1A0F)
Ruegeria pomeroyi DSS-3 2899 1.88721E-4 1.08427E-4 2.47225E-4 6.10199E-5 SPO2903 nan LPS sulfotransferase NodH (LpsS) (PDB:1TEX)!!!Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains (BepA) (PDB:6AIT) (PUBMED:24003122)!!!Flp pilus assembly protein TadD, contains TPR repeats (TadD) (PDB:3WXX)
Ruegeria pomeroyi DSS-3 2900 5.51799E-4 0.002174185 7.81846E-4 0.001186394 SPO2904 K11751 nan 2',3'-cyclic-nucleotide 2'-phosphodiesterase/5'- or 3'-nucleotidase, 5'-nucleotidase family (UshA) (PDB:1HO5)
Ruegeria pomeroyi DSS-3 2901 1.96135E-5 1.96135E-5 3.10547E-5 SPO2905 nan Uncharacterized conserved protein, DUF952 family (PDB:2JQN)
Ruegeria pomeroyi DSS-3 2902 1.17133E-4 8.74619E-5 1.54897E-4 1.06251E-4 SPO2906 nan Uncharacterized conserved protein, DUF1330 family
Ruegeria pomeroyi DSS-3 2903 1.82798E-4 4.14716E-4 3.75534E-4 3.15386E-4 SPO2907 K00254 Uridine monophosphate biosynthesis, glutamine (+ PRPP) => UMP Dihydroorotate dehydrogenase (PyrD) (PDB:1GT8)
Ruegeria pomeroyi DSS-3 2904 1.73425E-4 2.90491E-5 1.58973E-4 9.87559E-5 SPO2908 K00537 nan Arsenate reductase or related protein, glutaredoxin family (ArsC) (PDB:1I9D)
Ruegeria pomeroyi DSS-3 2905 SPO2909 K03327 nan Na+-driven multidrug efflux pump, DinF/NorM/MATE family (NorM) (PDB:3VVN) (PUBMED:29915058)
Ruegeria pomeroyi DSS-3 2906 2.04346E-4 2.94929E-4 2.43725E-4 2.1286E-4 SPO2910 nan Acyl-CoA thioesterase PaaI, contains HGG motif (PaaI) (PDB:1PSU)
Ruegeria pomeroyi DSS-3 2907 8.80094E-5 9.17084E-5 6.68871E-5 2.58161E-5 SPO2911 K17362 nan Acyl-CoA thioesterase PaaI, contains HGG motif (PaaI) (PDB:1PSU)
Ruegeria pomeroyi DSS-3 2908 2.54333E-4 1.77387E-4 1.74057E-4 3.54116E-4 SPO2912 nan DNA-binding transcriptional regulator, MerR family (SoxR) (PDB:2VZ4)
Ruegeria pomeroyi DSS-3 2909 SPO2913 nan
Ruegeria pomeroyi DSS-3 2910 4.12916E-6 1.70543E-4 3.50979E-5 3.71625E-5 SPO2914 nan DNA-binding transcriptional regulator, MerR family (SoxR) (PDB:2VZ4)
Ruegeria pomeroyi DSS-3 2911 4.98243E-4 0.003620647 0.001245608 7.16495E-4 SPO2915 K20035 nan Acyl-CoA dehydrogenase related to the alkylation response protein AidB (CaiA) (PDB:1BUC)
Ruegeria pomeroyi DSS-3 2912 SPO2916 nan
Ruegeria pomeroyi DSS-3 2913 3.23809E-5 2.32345E-4 3.36761E-4 2.50412E-5 SPO2917 K00799 nan Glutathione S-transferase (GstA) (PDB:1A0F)
Ruegeria pomeroyi DSS-3 2914 3.27736E-4 0.001773063 8.22633E-4 4.1336E-4 SPO2918 K00626 Ethylmalonyl pathway Acetyl-CoA acetyltransferase (PaaJ) (PDB:1AFW)
Ruegeria pomeroyi DSS-3 2915 SPO2919 nan Uncharacterized conserved protein, cupin superfamily
Ruegeria pomeroyi DSS-3 2916 6.56692E-4 0.009369486 0.002544854 0.001132323 SPO2920 K01782 beta-Oxidation Enoyl-CoA hydratase/carnithine racemase (CaiD) (PDB:1DCI)!!!3-hydroxyacyl-CoA dehydrogenase (FadB) (PDB:5ZQZ)
Ruegeria pomeroyi DSS-3 2917 SPO2921 nan
Ruegeria pomeroyi DSS-3 2918 SPO2922 nan
Ruegeria pomeroyi DSS-3 2919 SPO2923 K15270 nan Permease of the drug/metabolite transporter (DMT) superfamily (RhaT) (PDB:5I20)
Ruegeria pomeroyi DSS-3 2920 3.76745E-5 1.78977E-4 1.18337E-4 7.92131E-5 SPO2924 nan
Ruegeria pomeroyi DSS-3 2921 7.882E-4 0.001796041 9.43753E-4 8.22346E-4 SPO2925 nan Cell division protein DedD (periplasmic protein involved in septation) (DedD)
Ruegeria pomeroyi DSS-3 2922 0.00517928 0.004248548 0.00485108 0.004046489 SPO2926 K00761 nan Uracil phosphoribosyltransferase (Upp) (PDB:2EHJ)
Ruegeria pomeroyi DSS-3 2923 4.28789E-5 9.63532E-6 4.72766E-5 2.06149E-5 SPO2927 K01488 nan Adenosine deaminase (Add) (PDB:1A4L)
Ruegeria pomeroyi DSS-3 2924 2.72546E-5 3.81542E-5 8.8577E-6 4.497E-5 SPO2928 K01839 nan Phosphopentomutase (DeoB) (PDB:3UN2)
Ruegeria pomeroyi DSS-3 2925 3.67799E-4 1.45081E-4 2.75849E-4 4.2406E-5 SPO2929 nan Thymidine phosphorylase (DeoA) (PDB:1AZY)
Ruegeria pomeroyi DSS-3 2926 SPO2930 K01489 nan Cytidine deaminase (Cdd) (PDB:1AF2)
Ruegeria pomeroyi DSS-3 2927 9.06006E-6 1.42345E-4 3.48464E-5 6.50466E-6 SPO2931 nan Cupin domain protein related to quercetin dioxygenase (QdoI) (PDB:2H0V)
Ruegeria pomeroyi DSS-3 2928 1.48721E-4 4.66714E-4 4.58979E-4 6.81939E-5 SPO2932 K00029 CAM (Crassulacean acid metabolism), light Phosphotransacetylase (includes Pta, EutD and phosphobutyryltransferase) (Pta) (PDB:1QZT) (PUBMED:28754323)!!!Malic enzyme (SfcA) (PDB:1DO8)
Ruegeria pomeroyi DSS-3 2929 1.29845E-4 2.65365E-4 1.56097E-4 SPO2933 nan Uncharacterized conserved protein (PDB:1X6M)
Ruegeria pomeroyi DSS-3 2930 9.97515E-4 0.003234523 0.004920491 0.001332057 SPO2934 K01908 nan Acyl-coenzyme A synthetase/AMP-(fatty) acid ligase (Acs) (PDB:4B2O) (PUBMED:14638756)
Ruegeria pomeroyi DSS-3 2931 2.09909E-5 1.45478E-5 SPO2935 nan
Ruegeria pomeroyi DSS-3 2932 2.65732E-5 1.37787E-5 SPO2936 nan
Ruegeria pomeroyi DSS-3 2933 SPO2937 K07152 nan Cytochrome oxidase Cu insertion factor, SCO1/SenC/PrrC family (Sco1) (PDB:1ON4)
Ruegeria pomeroyi DSS-3 2934 1.96135E-4 0.001092882 1.49986E-4 1.77291E-4 SPO2938 K01426 nan Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase (GatA) (PDB:3H0L)
Ruegeria pomeroyi DSS-3 2935 2.2575E-4 1.18152E-4 1.98254E-4 2.03319E-4 SPO2939 K00858 nan NAD kinase (NadK) (PDB:1SUW)
Ruegeria pomeroyi DSS-3 2936 0.002128546 0.004278079 0.0028954 0.001986048 SPO2940 K00600 Photorespiration Glycine/serine hydroxymethyltransferase (GlyA) (PDB:1BJ4)
Ruegeria pomeroyi DSS-3 2937 SPO2941 nan Uncharacterized membrane protein YoaT, DUF817 family (YoaT)
Ruegeria pomeroyi DSS-3 2938 1.68978E-5 1.77154E-5 SPO2942 nan
Ruegeria pomeroyi DSS-3 2939 1.41653E-5 2.46985E-5 1.74343E-5 SPO2943 K01175 nan 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase MenH and related esterases, alpha/beta hydrolase fold (MenH) (PDB:4MYS)
Ruegeria pomeroyi DSS-3 2940 SPO2944 nan
Ruegeria pomeroyi DSS-3 2941 6.24854E-4 5.16344E-4 9.8881E-4 5.07378E-4 SPO2945 nan Rhodanese-related sulfurtransferase (PspE) (PDB:1TQ1)
Ruegeria pomeroyi DSS-3 2942 SPO2946 K00485 nan Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD (CzcO) (PDB:4USQ)
Ruegeria pomeroyi DSS-3 2943 3.23046E-5 SPO2947 nan Cupin domain protein related to quercetin dioxygenase (QdoI) (PDB:2H0V)
Ruegeria pomeroyi DSS-3 2944 SPO2948 K04033 nan Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH domain (GlxA)
Ruegeria pomeroyi DSS-3 2945 1.4693E-4 1.74611E-4 1.20434E-4 1.41309E-4 SPO2949 K09022 nan Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family (RidA) (PDB:1J7H) (PUBMED:22094463;32205462)
Ruegeria pomeroyi DSS-3 2946 6.987E-6 5.37094E-6 1.90978E-5 9.7818E-6 SPO2950 K06872 nan Uncharacterized membrane protein YgcG, contains a TPM-fold domain (YgcG) (PDB:2KW7)
Ruegeria pomeroyi DSS-3 2947 3.13817E-4 1.62746E-4 3.59758E-4 2.90492E-4 SPO2951 K09914 nan Uncharacterized lipoprotein YbaY (YbaY) (PDB:5WEC)!!!Heat shock protein HslJ (HslJ) (PDB:2KTS)
Ruegeria pomeroyi DSS-3 2948 6.02983E-6 1.71231E-5 8.349E-6 SPO2952 K14445 nan Di- and tricarboxylate antiporter (CitT) (PDB:4F35)!!!Na+/H+ antiporter NhaD or related arsenite permease (ArsB)
Ruegeria pomeroyi DSS-3 2949 9.8649E-5 1.35959E-4 6.37319E-5 7.45799E-5 SPO2953 K09769 nan 2',3'- and 3',5'-cNMP phosphodiesterase YmdB, calcineurin family (YmdB) (PDB:2CV9) (PUBMED:24163345)
Ruegeria pomeroyi DSS-3 2950 7.42134E-5 4.39343E-6 9.69721E-5 1.03899E-4 SPO2954 K01934 nan 5-formyltetrahydrofolate cyclo-ligase (FAU1) (PDB:1SBQ)
Ruegeria pomeroyi DSS-3 2951 1.89781E-5 1.57351E-4 2.45134E-5 5.89112E-5 SPO2955 K06213 nan Mg/Co/Ni transporter MgtE (contains CBS domain) (MgtE) (PDB:2YVX)
Ruegeria pomeroyi DSS-3 2952 2.05781E-5 9.22856E-5 5.61612E-5 4.32998E-5 SPO2956 K01487 nan Cytosine/adenosine deaminase or related metal-dependent hydrolase (SsnA) (PDB:3O7U)
Ruegeria pomeroyi DSS-3 2953 8.03978E-6 1.70073E-4 5.60723E-5 1.23689E-6 SPO2957 K18456 nan Cytosine/adenosine deaminase or related metal-dependent hydrolase (SsnA) (PDB:3O7U)
Ruegeria pomeroyi DSS-3 2954 3.93613E-4 4.43244E-4 5.9999E-4 4.38508E-4 SPO2958 K18649 Histidine biosynthesis, PRPP => histidine Archaeal fructose-1,6-bisphosphatase or related enzyme, inositol monophosphatase family (SuhB) (PDB:1AWB)
Ruegeria pomeroyi DSS-3 2955 9.153E-5 3.00629E-5 2.88728E-4 5.06018E-5 SPO2959 K22300 nan Transcriptional regulator, contains XRE-family HTH domain (HipB) (PDB:1ADR)
Ruegeria pomeroyi DSS-3 2956 2.52139E-4 5.10151E-4 2.08389E-4 3.3158E-4 SPO2960 K00344 nan NADPH:quinone reductase or related Zn-dependent oxidoreductase (Qor) (PDB:2VCY)
Ruegeria pomeroyi DSS-3 2957 1.87727E-5 7.523E-6 5.64225E-6 SPO2961 nan DNA-binding transcriptional regulator, LysR family (LysR) (PDB:2FYI)
Ruegeria pomeroyi DSS-3 2958 SPO2962 nan Uncharacterized conserved protein YjiS, DUF1127 family (YjiS)
Ruegeria pomeroyi DSS-3 2959 6.63505E-5 1.79278E-4 8.16623E-6 1.00036E-4 SPO2963 K06890 nan Integral membrane protein YbhL, putative Ca2+ regulator, Bax inhibitor (BI-1)/TMBIM family (YbhL) (PDB:4PGR) (PUBMED:28064000)
Ruegeria pomeroyi DSS-3 2960 6.1147E-4 8.2922E-4 6.98338E-4 4.54259E-4 SPO2964 nan
Ruegeria pomeroyi DSS-3 2961 3.04545E-4 8.09279E-5 6.78985E-4 SPO2965 K02913 nan Ribosomal protein L33 (RpmG) (PDB:1VS6)
Ruegeria pomeroyi DSS-3 2962 SPO_SprnpB1 nan
Ruegeria pomeroyi DSS-3 2963 1.22584E-5 1.68978E-5 1.55274E-5 3.06462E-5 SPO2967 K01447 nan N-acetyl-anhydromuramyl-L-alanine amidase AmpD (AmpD) (PDB:2Y28)
Ruegeria pomeroyi DSS-3 2964 2.83652E-4 0.001009863 3.54036E-4 4.9118E-4 SPO2968 nan
Ruegeria pomeroyi DSS-3 2965 0.00215741 0.002495647 0.003309098 0.002975088 SPO2969 K02433 nan Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase (GatA) (PDB:3H0L)
Ruegeria pomeroyi DSS-3 2966 6.75912E-5 9.24933E-5 5.20275E-5 SPO2970 K02435 nan Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit (GatC) (PDB:3H0L)
Ruegeria pomeroyi DSS-3 2967 SPO2971 nan Predicted arabinose efflux permease AraJ, MFS family (AraJ) (PDB:4LDS)
Ruegeria pomeroyi DSS-3 2968 SPO2972 nan Heavy metal-bindng TRASH/YHS domain, predicted Cu/Ag metallochaperone (YHS)
Ruegeria pomeroyi DSS-3 2969 8.92416E-4 5.87965E-4 5.56806E-4 7.13169E-4 SPO2973a nan
Ruegeria pomeroyi DSS-3 2970 8.34036E-6 1.17209E-4 2.90843E-5 8.98191E-6 SPO2974 nan Dehydrogenase (flavoprotein) (FixC) (PDB:4OPU)
Ruegeria pomeroyi DSS-3 2971 SPO2975 nan
Ruegeria pomeroyi DSS-3 2972 5.3724E-5 1.1107E-5 5.96934E-5 4.53669E-5 SPO2976 nan L-ascorbate lactonase UlaG, metallo-beta-lactamase superfamily (UlaG) (PDB:2WYM)
Ruegeria pomeroyi DSS-3 2973 8.34617E-6 3.81374E-6 1.66924E-6 4.17309E-6 SPO2977 nan Adenylate cyclase, class 3 (AcyC) (PDB:1AB8)
Ruegeria pomeroyi DSS-3 2974 6.88626E-6 2.4408E-5 SPO2978 nan Adenylate cyclase, class 3 (AcyC) (PDB:1AB8)
Ruegeria pomeroyi DSS-3 2975 SPO2979 nan
Ruegeria pomeroyi DSS-3 2976 6.49916E-6 6.49916E-6 4.06198E-6 SPO2980 K10536 nan Agmatine/peptidylarginine deiminase (AguA) (PDB:1VKP)
Ruegeria pomeroyi DSS-3 2977 3.74866E-6 SPO2981 K07459 nan Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM domains (YbjD)
Ruegeria pomeroyi DSS-3 2978 5.94653E-5 8.74488E-6 SPO2982 K22900 nan tRNA (Thr-GGU) A37 N6-methylase (TrmO) (PDB:1XQB) (PUBMED:22905870)
Ruegeria pomeroyi DSS-3 2979 8.63488E-6 1.38158E-5 SPO2983 K11991 nan tRNA(Arg) A34 adenosine deaminase TadA (TadA) (PDB:2A8N)
Ruegeria pomeroyi DSS-3 2980 9.40132E-4 5.91179E-4 7.28927E-4 0.001350006 SPO2984 K06178 nan Pseudouridylate synthase RsuA, specific for 16S rRNA U516  and 23S rRNA U2605 (RsuA) (PDB:1KSK)
Ruegeria pomeroyi DSS-3 2981 2.43365E-4 3.30158E-4 4.1816E-4 3.44691E-4 SPO2985 nan 5-bromo-4-chloroindolyl phosphatase XpaC (XpaC)
Ruegeria pomeroyi DSS-3 2982 0.006915355 0.015841777 0.010111733 0.007285866 SPO2986 nan Uncharacterized conserved protein YaaN involved in tellurite resistance (YaaN)
Ruegeria pomeroyi DSS-3 2983 6.34988E-5 3.14507E-4 3.48957E-5 6.00665E-5 SPO2987 nan
Ruegeria pomeroyi DSS-3 2984 0.002560861 0.003687773 0.00385116 0.00257221 SPO2988 nan Membrane protease subunit, stomatin/prohibitin family, contains C-terminal Zn-ribbon domain (YdjI)
Ruegeria pomeroyi DSS-3 2985 SPO2989 K12262 nan Cytochrome b561 (CybB) (PDB:5OC0)
Ruegeria pomeroyi DSS-3 2986 3.29508E-5 4.72619E-5 3.31948E-5 2.63606E-5 SPO2990 nan DNA-directed RNA polymerase, subunit RPC12/RpoP, contains C4-type Zn-finger (RPC10) (PDB:1I3Q)
Ruegeria pomeroyi DSS-3 2987 9.87731E-6 1.36442E-5 1.27746E-4 9.87731E-6 SPO3904 K13993 nan Small heat shock protein IbpA, HSP20 family (IbpA) (PDB:1GME)
Ruegeria pomeroyi DSS-3 2988 3.43237E-5 2.2264E-5 SPO2991 nan Nitroreductase (NfnB) (PDB:1F5V)
Ruegeria pomeroyi DSS-3 2989 3.4087E-5 SPO2992 K07560 nan D-aminoacyl-tRNA deacylase (Dtd) (PDB:1J7G) (PUBMED:10918062;16902403;24302572)
Ruegeria pomeroyi DSS-3 2990 1.49644E-5 1.86541E-5 5.96934E-6 SPO2993 K11529 Formaldehyde assimilation, serine pathway Glycerate-2-kinase (GckA) (PDB:1X3L) (PUBMED:18156253)
Ruegeria pomeroyi DSS-3 2991 2.71687E-6 2.06148E-6 SPO2994 K06978 nan Predicted acyl esterase (PDB:1JU3)
Ruegeria pomeroyi DSS-3 2992 0.006519777 0.012683349 0.010029896 0.008020833 SPO2995 K02035 nan ABC-type transport system, periplasmic component (DdpA) (PDB:3RQT)
Ruegeria pomeroyi DSS-3 2993 2.02286E-5 1.72698E-6 SPO2996 K02033 nan ABC-type dipeptide/oligopeptide/nickel transport system, permease component (DppB)
Ruegeria pomeroyi DSS-3 2994 SPO2997 K02034 nan ABC-type dipeptide/oligopeptide/nickel transport system, permease component (DppC)
Ruegeria pomeroyi DSS-3 2995 4.5345E-4 0.002256973 2.99949E-4 2.22359E-4 SPO2998 K02032 nan ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain (GsiA)
Ruegeria pomeroyi DSS-3 2996 SPO2999 nan
Ruegeria pomeroyi DSS-3 2997 9.97703E-5 2.54656E-4 5.0621E-5 1.0654E-4 SPO3000 nan c-di-AMP phosphodiesterase AtaC or nucleotide pyrophosphatase, AlkP superfamily (AtaC) (PDB:1EI6) (PUBMED:32188788)
Ruegeria pomeroyi DSS-3 2998 1.18741E-5 1.18741E-5 1.18741E-5 SPO3001 nan
Ruegeria pomeroyi DSS-3 2999 4.47215E-6 4.47215E-6 1.60997E-5 SPO3002 K01066 nan Acetyl esterase/lipase (Aes) (PDB:1EVQ)
Ruegeria pomeroyi DSS-3 3000 2.36173E-4 0.002798016 0.001258135 4.61578E-4 SPO3003 nan O-succinylbenzoic acid-CoA ligase MenE or related acyl-CoA synthetase (AMP-forming) (MenE/FadK) (PDB:5EY9) (PUBMED:25151136;27455459)
Ruegeria pomeroyi DSS-3 3001 9.53328E-4 5.96058E-4 0.004390853 0.001696524 SPO3004 nan Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain (XkdP) (PDB:5FIM) (PUBMED:27112601)
Ruegeria pomeroyi DSS-3 3002 2.22917E-4 1.96041E-4 2.05551E-4 2.20355E-4 SPO3005 K06147 nan ABC-type multidrug transport system, ATPase and permease component (MdlB) (PDB:2HYD)
Ruegeria pomeroyi DSS-3 3003 SPO_tRNA-Gly-6 nan
Ruegeria pomeroyi DSS-3 3004 SPO_tRNA-Leu-5 nan
Ruegeria pomeroyi DSS-3 3005 SPO3008 nan Lipoprotein NlpI, contains TPR repeats (NlpI) (PDB:5WQL)
Ruegeria pomeroyi DSS-3 3006 3.38999E-6 3.38999E-6 SPO3009 K03719 nan DNA-binding transcriptional regulator, Lrp family (Lrp) (PDB:1I1G)
Ruegeria pomeroyi DSS-3 3007 1.21071E-6 5.79689E-5 3.39E-6 2.74428E-6 SPO3010 K13821 nan Proline dehydrogenase (PutA) (PDB:5KF6)!!!Delta 1-pyrroline-5-carboxylate dehydrogenase (PutA2) (PDB:5KF6)
Ruegeria pomeroyi DSS-3 3008 SPO3011 K07059 nan Membrane-associated serine protease, rhomboid family (GlpG) (PDB:2IC8)
Ruegeria pomeroyi DSS-3 3009 0.004395535 0.001073187 0.001120802 0.00166437 SPO3012 K01092 Inositol phosphate metabolism, Ins(1,3,4,5)P4 => Ins(1,3,4)P3 => myo-inositol Archaeal fructose-1,6-bisphosphatase or related enzyme, inositol monophosphatase family (SuhB) (PDB:1AWB)
Ruegeria pomeroyi DSS-3 3010 6.70602E-4 5.0077E-4 6.57639E-4 5.5447E-4 SPO3013 K23256 nan NADPH-dependent curcumin reductase CurA (CurA) (PDB:1V3T) (PUBMED:21467222)
Ruegeria pomeroyi DSS-3 3011 SPO3014 nan
Ruegeria pomeroyi DSS-3 3012 4.56129E-6 1.5255E-5 3.64903E-6 1.64206E-5 SPO3015 K03576 nan DNA-binding transcriptional regulator, LysR family (LysR) (PDB:2FYI)
Ruegeria pomeroyi DSS-3 3013 4.47215E-6 2.73827E-4 7.99619E-4 3.63734E-5 SPO3016 K00297 Reductive acetyl-CoA pathway (Wood-Ljungdahl pathway) 5,10-methylenetetrahydrofolate reductase (MetF) (PDB:1B5T)
Ruegeria pomeroyi DSS-3 3014 SPO3017 nan Acyl-CoA thioesterase PaaI, contains HGG motif (PaaI) (PDB:1PSU)
Ruegeria pomeroyi DSS-3 3015 1.37677E-5 SPO3018 nan Uncharacterized conserved protein, PA2063/DUF2235 family
Ruegeria pomeroyi DSS-3 3016 4.82601E-4 0.001543912 6.08919E-4 9.42889E-4 SPO3019 K03520 nan Aldehyde, CO or xanthine dehydrogenase, Mo-binding subunit (CoxL) (PDB:1DGJ) (PUBMED:10095793)
Ruegeria pomeroyi DSS-3 3017 SPO3020 K03566 nan DNA-binding transcriptional regulator, LysR family (LysR) (PDB:2FYI)
Ruegeria pomeroyi DSS-3 3018 SPO3021 K00477 nan Ectoine hydroxylase-related dioxygenase, phytanoyl-CoA dioxygenase (PhyH) family (PhyH) (PDB:2A1X)
Ruegeria pomeroyi DSS-3 3019 0.002456499 0.008610133 0.003474723 0.003091375 SPO3022 K01873 nan Valyl-tRNA synthetase (ValS) (PDB:1GAX)
Ruegeria pomeroyi DSS-3 3020 1.34274E-6 SPO3023 nan Histidinol-phosphate/aromatic aminotransferase or cobyric acid decarboxylase (HisC) (PDB:4R2N)
Ruegeria pomeroyi DSS-3 3021 1.18103E-6 4.72412E-6 SPO3024 nan 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase MenH and related esterases, alpha/beta hydrolase fold (MenH) (PDB:4MYS)!!!Adenylate cyclase, class 3 (AcyC) (PDB:1AB8)
Ruegeria pomeroyi DSS-3 3022 1.901E-5 2.13207E-5 5.21015E-5 8.44891E-6 SPO3025 nan Enoyl-CoA hydratase/carnithine racemase (CaiD) (PDB:1DCI)
Ruegeria pomeroyi DSS-3 3023 1.75568E-5 5.00872E-5 2.0366E-5 2.34091E-5 SPO3026 K21407 nan Sugar lactone lactonase YvrE (YvrE) (PDB:1E1A)
Ruegeria pomeroyi DSS-3 3024 1.18507E-4 1.5077E-4 1.35368E-4 1.66681E-4 SPO3027 K00817 Histidine biosynthesis, PRPP => histidine Histidinol-phosphate/aromatic aminotransferase or cobyric acid decarboxylase (HisC) (PDB:4R2N)
Ruegeria pomeroyi DSS-3 3025 SPO3028 nan
Ruegeria pomeroyi DSS-3 3026 6.83059E-5 5.01635E-5 8.65207E-5 8.87974E-5 SPO3029 K00830 Photorespiration Archaeal aspartate aminotransferase or a related aminotransferase, includes purine catabolism protein PucG (PucG) (PDB:3NNK)
Ruegeria pomeroyi DSS-3 3027 7.63911E-4 0.001684403 3.1282E-4 7.06287E-4 SPO3030 nan ABC-type multidrug transport system, ATPase and permease component (MdlB) (PDB:2HYD)
Ruegeria pomeroyi DSS-3 3028 4.44573E-5 8.64252E-4 0.001943047 8.16795E-4 SPO3031 K01625 Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate 2-keto-3-deoxy-6-phosphogluconate aldolase (Eda) (PDB:2V81)
Ruegeria pomeroyi DSS-3 3029 2.09254E-4 0.011831968 0.001643272 0.001463868 SPO3032 K01690 Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate Dihydroxyacid dehydratase/phosphogluconate dehydratase (IlvD) (PDB:2GP4)
Ruegeria pomeroyi DSS-3 3030 7.20869E-4 0.016409818 0.005701 0.004459378 SPO3033 K00036 Pentose phosphate pathway (Pentose phosphate cycle) Glucose-6-phosphate 1-dehydrogenase (Zwf) (PDB:5B7W) (PUBMED:18950999)
Ruegeria pomeroyi DSS-3 3031 0.002101142 0.006714973 0.002231759 0.00209232 SPO3034 K08484 nan Signal transduction protein containing GAF and PtsI domains (PtsP)
Ruegeria pomeroyi DSS-3 3032 8.69756E-4 5.71274E-4 5.33628E-4 6.63813E-4 SPO3035 K00928 Threonine biosynthesis, aspartate => homoserine => threonine Aspartate kinase (MetL1) (PDB:2CDQ)
Ruegeria pomeroyi DSS-3 3033 0.001649938 0.006067722 0.002935358 0.00162779 SPO3036 K25227 nan Alkyl sulfatase BDS1 and related hydrolases, metallo-beta-lactamase superfamily (BDS1) (PDB:2CFU)
Ruegeria pomeroyi DSS-3 3034 2.55195E-5 2.14861E-5 2.92623E-5 1.9735E-5 SPO3037 nan DNA-binding transcriptional regulator, LysR family (LysR) (PDB:2FYI)!!!Two-component response regulator, PleD family, consists of two REC domains and a diguanylate cyclase (GGDEF) domain (PleD) (PDB:1W25)
Ruegeria pomeroyi DSS-3 3035 SPO3038 nan Signal transduction histidine kinase (BaeS) (PDB:1JOY)!!!CheY-like REC (receiver) domain, includes chemotaxis protein CheY  and sporulation regulator Spo0F (CheY) (PDB:6QRJ)!!!HPt (histidine-containing phosphotransfer) domain (HPtr) (PDB:3IQT)
Ruegeria pomeroyi DSS-3 3036 2.2234E-6 1.77728E-6 2.2234E-6 SPO3039 K02030 nan ABC-type amino acid transport/signal transduction system, periplasmic component/domain (HisJ) (PDB:1GGG)
Ruegeria pomeroyi DSS-3 3037 SPO3040 K02030 nan ABC-type amino acid transport/signal transduction system, periplasmic component/domain (HisJ) (PDB:1GGG)
Ruegeria pomeroyi DSS-3 3038 SPO3041 K02029 nan ABC-type amino acid transport system, permease component (HisM) (PDB:4YMS)
Ruegeria pomeroyi DSS-3 3039 SPO3042 K02029 nan ABC-type amino acid transport system, permease component (HisM) (PDB:4YMS)
Ruegeria pomeroyi DSS-3 3040 SPO3043 K02028 nan ABC-type polar amino acid transport system, ATPase component (GlnQ) (PDB:4YMS)
Ruegeria pomeroyi DSS-3 3041 SPO3044 nan DNA-binding transcriptional regulator, LysR family (LysR) (PDB:2FYI)
Ruegeria pomeroyi DSS-3 3042 SPO3045 K01951 Guanine ribonucleotide biosynthesis, IMP => GDP,GTP GMP synthase, glutamine amidotransferase domain (GuaA1) (PDB:4WIM)
Ruegeria pomeroyi DSS-3 3043 5.72885E-5 1.33015E-4 1.25113E-4 SPO3046 K02031 nan ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain (GsiA)
Ruegeria pomeroyi DSS-3 3044 SPO3047 K02034 nan ABC-type dipeptide/oligopeptide/nickel transport system, permease component (DppC)
Ruegeria pomeroyi DSS-3 3045 SPO3048 K02033 nan ABC-type dipeptide/oligopeptide/nickel transport system, permease component (DppB)
Ruegeria pomeroyi DSS-3 3046 9.87732E-7 2.46933E-6 SPO3049 K02035 nan ABC-type transport system, periplasmic component (DdpA) (PDB:3RQT)
Ruegeria pomeroyi DSS-3 3047 SPO3050 nan
Ruegeria pomeroyi DSS-3 3048 5.60836E-4 1.71426E-4 3.28989E-4 4.18792E-4 SPO3051 nan NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family (FabG) (PDB:6L1H)
Ruegeria pomeroyi DSS-3 3049 5.37094E-6 SPO3052 nan Uncharacterized conserved protein, DUF1178 domain
Ruegeria pomeroyi DSS-3 3050 SPO3053 nan 8-oxo-dGTP pyrophosphatase MutT and related house-cleaning NTP pyrophosphohydrolases, NUDIX family (MutT) (PDB:4V14)
Ruegeria pomeroyi DSS-3 3051 8.68267E-6 8.79268E-5 6.22258E-5 8.68267E-6 SPO3054 nan
Ruegeria pomeroyi DSS-3 3052 SPO3055 K03824 nan Predicted N-acetyltransferase YhbS (yhbS) (PDB:4ZBG)
Ruegeria pomeroyi DSS-3 3053 8.87976E-4 0.001438289 7.9508E-4 0.001094715 SPO3056 nan FMN reductase RutF, DIM6/NTAB family (RutF) (PDB:1EJE)
Ruegeria pomeroyi DSS-3 3054 6.47617E-5 2.50412E-5 SPO3057 nan Acetyltransferase, isoleucine patch superfamily (WbbJ)
Ruegeria pomeroyi DSS-3 3055 2.06952E-5 3.2948E-5 2.18729E-5 1.89117E-4 SPO3058 K03321 nan Sulfate permease or related transporter, MFS superfamily (SUL1) (PDB:3NY7)
Ruegeria pomeroyi DSS-3 3056 SPO3059 nan
Ruegeria pomeroyi DSS-3 3057 0.001334126 8.79348E-4 7.93469E-4 0.001384941 SPO3060 K00772 Methionine salvage pathway Purine nucleoside phosphorylase (XapA) (PDB:1YQQ)
Ruegeria pomeroyi DSS-3 3058 SPO3062 nan Uncharacterized membrane protein
Ruegeria pomeroyi DSS-3 3059 SPO3063 K05834 nan Threonine/homoserine/homoserine lactone efflux protein (RhtB)
Ruegeria pomeroyi DSS-3 3060 SPO3064 nan
Ruegeria pomeroyi DSS-3 3061 SPO3065 nan
Ruegeria pomeroyi DSS-3 3062 2.28569E-4 1.16004E-4 2.10672E-4 3.08849E-4 SPO3066 K00759 nan Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein (Apt) (PDB:1QB7)
Ruegeria pomeroyi DSS-3 3063 7.59503E-5 3.9072E-5 6.30971E-5 6.30971E-5 SPO3067 nan FAD/FMN-containing lactate dehydrogenase/glycolate oxidase (GlcD) (PDB:1AHU)
Ruegeria pomeroyi DSS-3 3064 1.94744E-6 SPO3068 nan L-ascorbate lactonase UlaG, metallo-beta-lactamase superfamily (UlaG) (PDB:2WYM)
Ruegeria pomeroyi DSS-3 3065 4.52931E-5 4.52931E-5 1.60413E-5 SPO3069 K03790 nan Protein N-acetyltransferase, RimJ/RimL family (RimL) (PDB:1S7F)
Ruegeria pomeroyi DSS-3 3066 1.81098E-4 2.84957E-4 1.69548E-4 3.42583E-4 SPO3070 K07263 nan Predicted Zn-dependent peptidase, M16 family (PqqL) (PDB:6OFS)
Ruegeria pomeroyi DSS-3 3067 0.001471989 0.004429491 0.00345955 0.002732847 SPO3071 K01733 Threonine biosynthesis, aspartate => homoserine => threonine Threonine synthase (ThrC) (PDB:1VB3)
Ruegeria pomeroyi DSS-3 3068 1.23134E-5 1.1009E-4 2.3806E-5 4.43284E-5 SPO3072 K14998 nan Cytochrome oxidase assembly protein ShyY1 (Shy1)
Ruegeria pomeroyi DSS-3 3069 SPO3073 K02276 Cytochrome c oxidase, prokaryotes Heme/copper-type cytochrome/quinol oxidase, subunit 3 (CyoC) (PDB:1QLE)
Ruegeria pomeroyi DSS-3 3070 4.60045E-5 1.5255E-5 1.15011E-5 1.86893E-5 SPO3074 K02258 Cytochrome c oxidase Cytochrome c oxidase assembly protein Cox11 (COX11) (PDB:1SO9)
Ruegeria pomeroyi DSS-3 3071 SPO3075 K02257 Cytochrome c oxidase Polyprenyltransferase (heme O synthase) (CyoE)
Ruegeria pomeroyi DSS-3 3072 0.001411469 0.003012312 8.48791E-4 8.85666E-4 SPO3076 K02275 Cytochrome c oxidase, prokaryotes Heme/copper-type cytochrome/quinol oxidase, subunit 2 (CyoA) (PDB:1CYW)
Ruegeria pomeroyi DSS-3 3073 3.58185E-4 9.86587E-4 3.10776E-4 3.23547E-4 SPO3077 K03568 nan Zn-dependent protease PmbA/TldA or its inactivated homolog (TldD) (PDB:3TV9) (PUBMED:12029038)
Ruegeria pomeroyi DSS-3 3074 SPO3078 K04096 nan Predicted Rossmann fold nucleotide-binding protein DprA/Smf involved in DNA uptake (Smf) (PDB:3MAJ)
Ruegeria pomeroyi DSS-3 3075 0.002043195 0.013028157 0.002750263 0.002831184 SPO3079 K03168 nan DNA topoisomerase IA (TopA) (PDB:1CY0)!!!Uncharacterized C-terminal domain of topoisomerase IA
Ruegeria pomeroyi DSS-3 3076 2.84549E-6 SPO3080 nan DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA (AcrR) (PDB:2QOP)
Ruegeria pomeroyi DSS-3 3077 SPO3081 nan Lactoylglutathione lyase-related enzyme, vicinal oxygen chelate (VOC) family (VOC) (PDB:3OXH) (PUBMED:31710815)
Ruegeria pomeroyi DSS-3 3078 0.006718054 0.002651609 0.002163076 0.003130789 SPO3082 K01028 nan Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit (AtoD) (PDB:1K6D)
Ruegeria pomeroyi DSS-3 3079 0.005947238 0.00192594 0.002194955 0.002381535 SPO3083 K01029 nan Acyl-CoA:acetate/3-ketoacid CoA transferase, beta subunit (AtoA) (PDB:5DBN)
Ruegeria pomeroyi DSS-3 3080 SPO3084 K08309 nan Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain) (MltE) (PDB:153L)
Ruegeria pomeroyi DSS-3 3081 SPO3085 K02651 nan Flp pilus assembly protein, pilin Flp (Flp)
Ruegeria pomeroyi DSS-3 3082 1.62053E-5 SPO3086 K02279 nan Flp pilus assembly protein CpaB (CpaB)
Ruegeria pomeroyi DSS-3 3083 4.22001E-4 0.001129488 1.62249E-4 4.9561E-4 SPO3087 K02280 nan Flp pilus assembly protein, secretin CpaC (CpaC)
Ruegeria pomeroyi DSS-3 3084 2.21233E-4 6.86183E-4 2.16028E-4 2.34247E-4 SPO3088 nan Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins (OmpA) (PDB:1OAP)
Ruegeria pomeroyi DSS-3 3085 1.95845E-5 5.66507E-5 3.3324E-6 SPO3089 K02282 nan Flp pilus assembly ATPase CpaE/TadZ, contains N-terminal REC/TadZ_N domain (CpaE) (PDB:4LDA)
Ruegeria pomeroyi DSS-3 3086 7.82072E-6 4.58604E-6 2.29302E-6 SPO3090 K02283 nan Pilus assembly protein, ATPase of CpaF family (CpaF)
Ruegeria pomeroyi DSS-3 3087 1.19603E-5 1.70552E-6 SPO3091 K12510 nan Flp pilus assembly protein TadB (TadB)
Ruegeria pomeroyi DSS-3 3088 6.73839E-6 4.2115E-6 SPO3092 K12511 nan Flp pilus assembly protein TadC (TadC)
Ruegeria pomeroyi DSS-3 3089 4.76329E-5 7.50036E-5 7.00482E-6 2.52174E-5 SPO3093 nan Flp pilus assembly protein TadD, contains TPR repeats (TadD) (PDB:3WXX)
Ruegeria pomeroyi DSS-3 3090 3.89488E-5 0.001149208 6.16041E-4 2.53168E-4 SPO3094 nan Flp pilus assembly protein TadD, contains TPR repeats (TadD) (PDB:3WXX)
Ruegeria pomeroyi DSS-3 3091 SPO3095 nan Flp pilus assembly protein, peptidase CpaA (CpaA) (PDB:3S0X) (PUBMED:19493340)
Ruegeria pomeroyi DSS-3 3092 4.49615E-5 7.68692E-5 3.62554E-5 SPO3096 nan Predicted Mg-chelatase, contains ChlI-like and ATPase domains, YifB family (YifB)
Ruegeria pomeroyi DSS-3 3093 2.04156E-6 2.04156E-6 5.1039E-6 SPO3097 nan 3-hydroxyisobutyrate dehydrogenase or related beta-hydroxyacid dehydrogenase (MmsB) (PDB:1I36)
Ruegeria pomeroyi DSS-3 3094 2.73905E-6 1.50822E-5 2.73905E-6 6.84762E-7 SPO3098 K03724 nan Lhr-like helicase (Lhr) (PDB:5V9X)
Ruegeria pomeroyi DSS-3 3095 SPO3099 K06953 nan Metallophosphoesterase superfamily enzyme
Ruegeria pomeroyi DSS-3 3096 SPO3100 nan DNA-binding response regulator, LytR/AlgR family (LytT) (PDB:3BS1)
Ruegeria pomeroyi DSS-3 3097 SPO3101 K01491 Reductive acetyl-CoA pathway (Wood-Ljungdahl pathway) 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase (FolD) (PDB:1A4I)
Ruegeria pomeroyi DSS-3 3098 SPO3102 K04782 nan Chorismate mutase (PheA) (PDB:1ECM)
Ruegeria pomeroyi DSS-3 3099 0.003547026 0.012547212 0.001988067 0.002914847 SPO3103 K01938 Reductive acetyl-CoA pathway (Wood-Ljungdahl pathway) Formyltetrahydrofolate synthetase (MIS1) (PDB:1EG7)
Ruegeria pomeroyi DSS-3 3100 4.14745E-4 8.83405E-4 3.3847E-4 4.44301E-4 SPO3104 nan N-hydroxylaminopurine reductase YiiM, contains MOSC domain (YiiM) (PDB:1O65) (PUBMED:18312271;29459651)
Ruegeria pomeroyi DSS-3 3101 0.00804431 0.038433623 0.009184781 0.008771106 SPO3105 K03798 nan ATP-dependent Zn proteases (HflB) (PDB:1LV7)
Ruegeria pomeroyi DSS-3 3102 3.27673E-6 3.43237E-5 3.27673E-6 SPO3106 K04075 nan tRNA(Ile)-lysidine synthase TilS/MesJ (TilS) (PDB:1NI5) (PUBMED:21435031)
Ruegeria pomeroyi DSS-3 3103 0.001284794 0.002698786 0.001453669 0.001789391 SPO3107 nan Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction (CpoB) (PDB:2WZ7) (PUBMED:25951518)
Ruegeria pomeroyi DSS-3 3104 1.28951E-4 2.88937E-4 1.56764E-4 2.28572E-4 SPO3108 K03640 nan Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins (OmpA) (PDB:1OAP)
Ruegeria pomeroyi DSS-3 3105 0.002062861 0.008510469 0.003289652 0.002700025 SPO3109 K03641 nan Periplasmic component TolB of the Tol biopolymer transport system (TolB) (PDB:1C5K)
Ruegeria pomeroyi DSS-3 3106 1.44521E-5 0.001196244 4.33562E-5 5.49179E-5 SPO3110 nan
Ruegeria pomeroyi DSS-3 3107 SPO3111 K03560 nan Biopolymer transport protein ExbD (ExbD) (PDB:2JWK)
Ruegeria pomeroyi DSS-3 3108 1.94947E-4 3.29616E-4 2.17135E-4 9.66805E-5 SPO3112 K03562 nan Biopolymer transport protein ExbB/TolQ (TolQ) (PDB:5SV0)
Ruegeria pomeroyi DSS-3 3109 2.81076E-5 9.98837E-6 2.16212E-5 SPO3113 K07107 nan Acyl-CoA thioesterase FadM (FadM) (PDB:2FUJ)
Ruegeria pomeroyi DSS-3 3110 5.41258E-5 6.35624E-5 4.75251E-5 1.8394E-4 SPO3114 nan
Ruegeria pomeroyi DSS-3 3111 1.81181E-4 1.09327E-4 1.78228E-4 1.21324E-4 SPO3115 K03551 nan Holliday junction resolvasome RuvABC, ATP-dependent DNA helicase subunit RuvB (RuvB) (PDB:1HQC)
Ruegeria pomeroyi DSS-3 3112 2.45169E-6 2.47894E-5 1.10326E-4 3.59581E-5 SPO3116 K03550 nan Holliday junction resolvasome RuvABC DNA-binding subunit (RuvA) (PDB:1BDX)
Ruegeria pomeroyi DSS-3 3113 SPO3117 K01159 nan Holliday junction resolvasome RuvABC endonuclease subunit RuvC (RuvC) (PDB:1HJR)
Ruegeria pomeroyi DSS-3 3114 SPO3118 nan Uncharacterized conserved protein YjiS, DUF1127 family (YjiS)
Ruegeria pomeroyi DSS-3 3115 SPO3119 nan
Ruegeria pomeroyi DSS-3 3116 4.70187E-5 6.35624E-5 6.64532E-5 1.62998E-5 SPO3120 K02687 nan Ribosomal protein L11 methylase PrmA (PrmA) (PDB:3GRZ)
Ruegeria pomeroyi DSS-3 3117 SPO3121 nan Na+-driven multidrug efflux pump, DinF/NorM/MATE family (NorM) (PDB:3VVN) (PUBMED:29915058)
Ruegeria pomeroyi DSS-3 3118 SPO3122 nan Predicted arabinose efflux permease AraJ, MFS family (AraJ) (PDB:4LDS)
Ruegeria pomeroyi DSS-3 3119 SPO3123 K07112 nan Uncharacterized membrane protein YedE/YeeE, contains two sulfur transport domains (YedE)
Ruegeria pomeroyi DSS-3 3120 SPO3124 nan Predicted lipoprotein with conserved Yx(FWY)xxD motif (function unknown)
Ruegeria pomeroyi DSS-3 3121 SPO3125 K03088 nan DNA-directed RNA polymerase specialized sigma subunit, sigma24 family (RpoE) (PDB:2Q1Z)
Ruegeria pomeroyi DSS-3 3122 1.88227E-5 1.43938E-5 SPO3126 nan Transmembrane transcriptional regulator RsiW (anti-sigma-W factor) (RsiW)
Ruegeria pomeroyi DSS-3 3123 9.70018E-6 4.57649E-5 6.39216E-5 2.21363E-5 SPO3127 K04066 nan Primosomal protein N' (replication factor Y) - superfamily II helicase (PriA) (PDB:6DCR)
Ruegeria pomeroyi DSS-3 3124 0.002401709 0.002798016 0.002609232 0.00232916 SPO3128 K00616 Pentose phosphate pathway (Pentose phosphate cycle) Transaldolase/fructose-6-phosphate aldolase (TalA) (PDB:1F05)
Ruegeria pomeroyi DSS-3 3125 2.33693E-5 1.94073E-4 6.93291E-5 6.855E-5 SPO3129 K09921 nan Uncharacterized conserved protein YigA, DUF484 family (YigA) (PDB:3E98)
Ruegeria pomeroyi DSS-3 3126 1.5255E-5 7.17881E-6 SPO3130 nan Site-specific recombinase XerD (XerD) (PDB:1A0P)
Ruegeria pomeroyi DSS-3 3127 SPO3131 K01004 nan Phosphatidylserine synthase (PssA)
Ruegeria pomeroyi DSS-3 3128 SPO3132 nan 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase (UbiG) (PDB:1BHJ)
Ruegeria pomeroyi DSS-3 3129 5.72664E-4 2.80244E-4 0.001333204 0.001033323 SPO3133 nan
Ruegeria pomeroyi DSS-3 3130 1.46448E-5 1.64144E-5 4.27139E-5 1.46448E-5 SPO3134 K00567 nan DNA repair enzyme Ada (O6-methylguanine-DNA--protein-cysteine methyltransferase) (AdaB) (PDB:6RLA) (PUBMED:29061663)
Ruegeria pomeroyi DSS-3 3131 1.11552E-5 2.16112E-5 1.71618E-5 1.11552E-5 SPO3135 K01266 nan L-aminopeptidase/D-esterase (DmpA) (PDB:1B65)
Ruegeria pomeroyi DSS-3 3132 0.001424469 0.006828959 0.001382572 0.001528076 SPO3136 K01870 nan Isoleucyl-tRNA synthetase (IleS) (PDB:1FFY)
Ruegeria pomeroyi DSS-3 3133 2.53467E-5 1.36369E-4 4.08364E-5 1.12652E-5 SPO3137 nan
Ruegeria pomeroyi DSS-3 3134 SPO3138 K22736 nan Predicted Fe2+/Mn2+ transporter, VIT1/CCC1 family (Ccc1) (PDB:6IU3)
Ruegeria pomeroyi DSS-3 3135 SPO3139 K06886 nan Truncated hemoglobin YjbI (YjbI) (PDB:1DLW)
Ruegeria pomeroyi DSS-3 3136 4.08615E-6 2.47894E-5 1.63446E-5 1.63446E-5 SPO3140 K08990 nan Uncharacterized membrane protein YcjF, UPF0283 family (YcjF)
Ruegeria pomeroyi DSS-3 3137 SPO3141 nan Ribosomal protein S18 acetylase RimI and related acetyltransferases (RimI) (PDB:1GHE)
Ruegeria pomeroyi DSS-3 3138 1.56825E-4 4.90702E-4 1.09214E-4 2.02493E-4 SPO3142 K06918 nan Ras-like GTP-binding stress-induced protein YcjX,  DUF463 family (YcjX) (PDB:6NZ4) (PUBMED:31202886)
Ruegeria pomeroyi DSS-3 3139 2.62013E-5 1.5255E-5 6.21845E-5 3.77299E-5 SPO3143 K06173 nan tRNA U38,U39,U40 pseudouridine synthase TruA (TruA) (PDB:1DJ0)
Ruegeria pomeroyi DSS-3 3140 9.34773E-6 4.52201E-6 2.33693E-6 1.51901E-5 SPO3144 nan Uncharacterized conserved protein, DUF2161 domain
Ruegeria pomeroyi DSS-3 3141 6.01172E-5 6.67405E-4 1.24567E-4 1.41898E-4 SPO3145 K09973 nan Uncharacterized conserved protein YbaP, TraB family (TraB)
Ruegeria pomeroyi DSS-3 3142 6.6366E-6 2.46622E-5 6.6366E-6 SPO3146 K09973 nan Uncharacterized conserved protein YbaP, TraB family (TraB)
Ruegeria pomeroyi DSS-3 3143 0.002370802 0.00205815 0.004294124 0.002623256 SPO3147 K15986 nan Inorganic pyrophosphatase/exopolyphosphatase (PPX1) (PDB:1I74)
Ruegeria pomeroyi DSS-3 3144 SPO3148 nan
Ruegeria pomeroyi DSS-3 3145 SPO3149 nan Uncharacterized conserved protein (PDB:1X6M)
Ruegeria pomeroyi DSS-3 3146 SPO3150 nan Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH domain (GlxA)
Ruegeria pomeroyi DSS-3 3147 8.32261E-4 0.001028327 0.001143022 0.001284563 SPO3151 nan Ribonucleotide monophosphatase NagD, HAD superfamily (NagD) (PDB:1PW5)
Ruegeria pomeroyi DSS-3 3148 6.17827E-4 1.16345E-5 5.02298E-5 5.68155E-4 SPO3152 K17865 Ethylmalonyl pathway Acyl-CoA dehydratase PaaZ (MaoC) (PDB:5ZY8)
Ruegeria pomeroyi DSS-3 3149 SPO3153 nan 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases (UbiH) (PDB:1BF3)!!!Cytochrome b involved in lipid metabolism (CYB5) (PDB:1AQA)
Ruegeria pomeroyi DSS-3 3150 1.45267E-4 2.16112E-5 1.43495E-4 1.28142E-4 SPO3154 K11753 Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD FAD synthase (RibF) (PDB:1MRZ)
Ruegeria pomeroyi DSS-3 3151 3.52038E-6 1.5255E-5 SPO3155 K09160 nan Uncharacterized cysteine cluster protein YcgN, CxxCxxCC family (YcgN)
Ruegeria pomeroyi DSS-3 3152 4.66404E-4 5.55139E-4 2.99793E-4 4.52078E-4 SPO3156 K01620 nan Threonine aldolase (GLY1) (PDB:4LNJ)
Ruegeria pomeroyi DSS-3 3153 8.07618E-5 1.75432E-4 5.69369E-4 8.27807E-5 SPO3157 K19311 nan 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase MenH and related esterases, alpha/beta hydrolase fold (MenH) (PDB:4MYS)
Ruegeria pomeroyi DSS-3 3154 1.22192E-4 2.65691E-4 2.2974E-4 1.14412E-4 SPO3158 K14584 Naphthalene degradation, naphthalene => salicylate 2-hydroxychromene-2-carboxylate isomerase (NahD)
Ruegeria pomeroyi DSS-3 3155 0.001558437 0.003343533 0.001322457 0.001873796 SPO3159 K00948 PRPP biosynthesis, ribose 5P => PRPP Phosphoribosylpyrophosphate synthetase (PrsA) (PDB:1DKR)
Ruegeria pomeroyi DSS-3 3156 4.50147E-6 SPO3160 nan
Ruegeria pomeroyi DSS-3 3157 0.001171043 0.001424131 0.002542644 0.001136047 SPO3161 K02114 F-type ATPase, prokaryotes and chloroplasts FoF1-type ATP synthase, epsilon subunit (AtpC) (PDB:3OAA) (PUBMED:29149348;30304218)
Ruegeria pomeroyi DSS-3 3158 0.04577939 0.111093044 0.059813768 0.036689166 SPO3162 K02133 F-type ATPase, prokaryotes and chloroplasts FoF1-type ATP synthase, beta subunit (AtpD) (PDB:3OAA)
Ruegeria pomeroyi DSS-3 3159 0.004216033 0.003999952 0.005725174 0.004308507 SPO3163 K02115 F-type ATPase, prokaryotes and chloroplasts FoF1-type ATP synthase, gamma subunit (AtpG) (PDB:3OAA) (PUBMED:15326535)
Ruegeria pomeroyi DSS-3 3160 0.01275232 0.04322146 0.02016695 0.019065732 SPO3164 K02111 F-type ATPase, prokaryotes and chloroplasts FoF1-type ATP synthase, alpha subunit (AtpA) (PDB:3OAA)
Ruegeria pomeroyi DSS-3 3161 9.68445E-4 0.001995858 0.00224002 0.001303069 SPO3165 K02113 F-type ATPase, prokaryotes and chloroplasts FoF1-type ATP synthase, delta subunit (AtpH) (PDB:1ABV)
Ruegeria pomeroyi DSS-3 3162 1.29885E-4 1.88149E-4 1.16228E-4 8.659E-5 SPO3166 nan
Ruegeria pomeroyi DSS-3 3163 8.28129E-6 SPO3167 nan Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG (UbiE) (PDB:4OBW)
Ruegeria pomeroyi DSS-3 3164 6.60092E-4 0.001028439 5.76459E-4 6.00149E-4 SPO3168 K01069 nan Glyoxylase or a related metal-dependent hydrolase, beta-lactamase superfamily II (GloB) (PDB:1QH3) (PUBMED:25670698)
Ruegeria pomeroyi DSS-3 3165 0.001417591 0.010194133 0.001921772 0.002138609 SPO3169 K03694 nan ATP-dependent Clp protease, ATP-binding subunit ClpA (ClpA) (PDB:1KSF)
Ruegeria pomeroyi DSS-3 3166 2.23243E-6 SPO3170 nan Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain (NlpD) (PDB:2GU1)
Ruegeria pomeroyi DSS-3 3167 3.31587E-4 8.40294E-4 6.64846E-4 3.88345E-4 SPO3171 K02557 nan Chromosome segregation ATPase Smc (Smc) (PDB:5XG3)!!!Flagellar motor protein MotB (MotB)
Ruegeria pomeroyi DSS-3 3168 1.14587E-4 2.64092E-4 9.03655E-5 1.23903E-4 SPO3172 nan
Ruegeria pomeroyi DSS-3 3169 2.34999E-5 1.24108E-5 3.10271E-6 SPO3173 K07232 nan Gamma-glutamylcyclotransferase ChaC2 (glutathione degradation) (ChaC2) (PDB:5HWI) (PUBMED:27913623)
Ruegeria pomeroyi DSS-3 3170 2.26869E-5 3.60628E-5 1.95577E-5 5.73691E-5 SPO3174 nan Uncharacterized conserved protein, DUF2125 domain
Ruegeria pomeroyi DSS-3 3171 1.92021E-5 8.87332E-5 1.24814E-5 3.45637E-5 SPO3175 nan Uncharacterized conserved protein, contains Extensin-like_C domain
Ruegeria pomeroyi DSS-3 3172 8.94429E-5 9.96777E-5 3.69697E-5 1.15679E-4 SPO3176 K00220 Tyrosine biosynthesis, chorismate => HPP => tyrosine Prephenate dehydrogenase (TyrA) (PDB:2F1K)
Ruegeria pomeroyi DSS-3 3173 0.001173852 9.04547E-4 0.001118095 0.001188161 SPO3177 K00817 Histidine biosynthesis, PRPP => histidine Histidinol-phosphate/aromatic aminotransferase or cobyric acid decarboxylase (HisC) (PDB:4R2N)
Ruegeria pomeroyi DSS-3 3174 SPO3178 nan Selenocysteine lyase/Cysteine desulfurase (CsdA) (PDB:4LW2)
Ruegeria pomeroyi DSS-3 3175 SPO3179 K05800 nan DNA-binding transcriptional regulator, Lrp family (Lrp) (PDB:1I1G)
Ruegeria pomeroyi DSS-3 3176 9.21441E-5 6.10199E-5 2.0886E-4 7.00295E-5 SPO3180 K01808 Pentose phosphate pathway (Pentose phosphate cycle) Ribose 5-phosphate isomerase RpiB (RpiB) (PDB:1NN4)
Ruegeria pomeroyi DSS-3 3177 0.010418404 0.0133381 0.02193161 0.013991621 SPO3181 K02986 nan Ribosomal protein S4 or related protein (RpsD) (PDB:4V4H)
Ruegeria pomeroyi DSS-3 3178 0.0 SPO3182 nan Ca2+-binding protein, RTX toxin-related (PDB:1AF0) (PUBMED:15135544)
Ruegeria pomeroyi DSS-3 3179 8.11195E-7 SPO3183 nan Anaerobic selenocysteine-containing dehydrogenase (BisC) (PDB:1EU1)
Ruegeria pomeroyi DSS-3 3180 SPO3184 K22479 nan Protein N-acetyltransferase, RimJ/RimL family (RimL) (PDB:1S7F)
Ruegeria pomeroyi DSS-3 3181 SPO3185 K00375 nan DNA-binding transcriptional regulator, MocR family, contains an aminotransferase domain (ARO8) (PDB:2R2N)
Ruegeria pomeroyi DSS-3 3182 1.5255E-5 SPO3186 nan Choline-glycine betaine transporter (BetT) (PDB:2WIT)
Ruegeria pomeroyi DSS-3 3183 4.97032E-5 9.63971E-6 5.8666E-5 9.23446E-6 SPO3187 K16844 nan Malate/lactate/ureidoglycolate dehydrogenase, LDH2 family (AllD) (PDB:1NXU)
Ruegeria pomeroyi DSS-3 3184 SPO3188 nan
Ruegeria pomeroyi DSS-3 3185 SPO3189 nan
Ruegeria pomeroyi DSS-3 3186 1.6846E-6 1.6846E-6 SPO3190 K01273 nan Zn-dependent dipeptidase, microsomal dipeptidase homolog (PDB:1ITQ) (PUBMED:14499931)
Ruegeria pomeroyi DSS-3 3187 3.29735E-5 2.79675E-5 3.75215E-5 3.63845E-5 SPO3191 K22187 nan Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenase (AdhE) (PDB:1A4S)
Ruegeria pomeroyi DSS-3 3188 1.89372E-6 1.89372E-6 9.46861E-6 SPO3192 K17737 nan DNA-binding transcriptional regulator, LysR family (LysR) (PDB:2FYI)
Ruegeria pomeroyi DSS-3 3189 3.84041E-5 1.90687E-5 8.96097E-5 3.45637E-5 SPO3193 nan Uncharacterized conserved protein, DUF1489 domain
Ruegeria pomeroyi DSS-3 3190 0.002029794 0.01242984 0.00466778 0.002875722 SPO3194 K00525 Pyrimidine deoxyribonucleotide biosynthesis, CDP => dCTP Ribonucleotide reductase alpha subunit (NrdA) (PDB:1R1R)
Ruegeria pomeroyi DSS-3 3191 2.41397E-5 7.11129E-5 1.7099E-5 3.72154E-5 SPO3195 nan Acetoin utilization deacetylase AcuC or a related deacetylase (AcuC) (PDB:1C3P)
Ruegeria pomeroyi DSS-3 3192 2.27875E-6 1.5255E-5 2.27875E-6 SPO3196 K03584 nan Recombinational DNA repair protein RecO (RecF pathway) (RecO) (PDB:1U5K)
Ruegeria pomeroyi DSS-3 3193 SPO3197 K03668 nan Heat shock protein HslJ (HslJ) (PDB:2KTS)
Ruegeria pomeroyi DSS-3 3194 9.76319E-5 7.24611E-5 5.61383E-5 1.1309E-4 SPO3198 K03685 nan dsRNA-specific ribonuclease (Rnc) (PDB:1DI2)
Ruegeria pomeroyi DSS-3 3195 6.07246E-4 0.001925472 0.001073425 0.001161346 SPO3199 K03100 nan Signal peptidase I (LepB) (PDB:1B12) (PUBMED:1925027)
Ruegeria pomeroyi DSS-3 3196 1.48427E-5 2.16112E-5 1.48427E-5 SPO3200 K00997 nan Phosphopantetheinyl transferase (holo-ACP synthase) (AcpS) (PDB:1F7L)
Ruegeria pomeroyi DSS-3 3197 5.75752E-4 5.14565E-4 9.17513E-4 5.02676E-4 SPO3201 K03474 Pyridoxal-P biosynthesis, erythrose-4P => pyridoxal-P Pyridoxine 5'-phosphate synthase PdxJ (PdxJ) (PDB:1HO1)
Ruegeria pomeroyi DSS-3 3198 5.23028E-6 SPO3202 K09928 nan Uncharacterized conserved protein, DUF2062 family
Ruegeria pomeroyi DSS-3 3199 2.04975E-4 5.1994E-4 2.3772E-4 2.42876E-4 SPO3203 K01139 nan (p)ppGpp synthase/hydrolase, HD superfamily (SpoT) (PDB:1TDJ)
Ruegeria pomeroyi DSS-3 3200 0.001607639 0.001315166 0.001035773 0.001653795 SPO3204 K03060 nan DNA-directed RNA polymerase, subunit K/omega (RpoZ) (PDB:3LU0)
Ruegeria pomeroyi DSS-3 3201 SPO3205 K00950 Tetrahydrofolate biosynthesis, GTP => THF 7,8-dihydro-6-hydroxymethylpterin pyrophosphokinase (folate biosynthesis) (FolK) (PDB:1CBK)
Ruegeria pomeroyi DSS-3 3202 3.25172E-4 8.69126E-4 3.719E-4 1.92695E-4 SPO3206 nan NYN domain, predicted PIN-related RNAse, tRNA/rRNA maturation (LabA) (PDB:2QIP)
Ruegeria pomeroyi DSS-3 3203 1.25999E-4 8.68974E-4 2.00439E-4 1.54095E-4 SPO3207 K03527 C5 isoprenoid biosynthesis, non-mevalonate pathway 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH (IspH) (PDB:3DNF)
Ruegeria pomeroyi DSS-3 3204 2.36489E-5 8.18322E-6 6.56913E-5 SPO3208 K00799 nan Glutathione S-transferase (GstA) (PDB:1A0F)
Ruegeria pomeroyi DSS-3 3205 SPO3209 K05834 nan Threonine/homoserine/homoserine lactone efflux protein (RhtB)
Ruegeria pomeroyi DSS-3 3206 SPO3210 nan
Ruegeria pomeroyi DSS-3 3207 1.33946E-5 SPO3211 K16868 nan 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase (UbiG) (PDB:1BHJ)
Ruegeria pomeroyi DSS-3 3208 1.41724E-5 2.41537E-5 7.20427E-5 5.43273E-5 SPO3212 K03469 nan Ribonuclease HI (RnhA) (PDB:1LAW)
Ruegeria pomeroyi DSS-3 3209 SPO3213 nan Uncharacterized membrane protein YeiH (YadS) (PDB:5WUC)
Ruegeria pomeroyi DSS-3 3210 SPO3214 nan
Ruegeria pomeroyi DSS-3 3211 SPO3215 nan
Ruegeria pomeroyi DSS-3 3212 1.8975E-4 2.89845E-4 1.76978E-4 1.31973E-4 SPO3216 K00604 nan Methionyl-tRNA formyltransferase (Fmt) (PDB:1FMT)
Ruegeria pomeroyi DSS-3 3213 1.33134E-4 2.25011E-4 9.87413E-5 1.27587E-4 SPO3217 K01462 nan Peptide deformylase (Def) (PDB:1BS4)
Ruegeria pomeroyi DSS-3 3214 5.32537E-5 8.79905E-6 2.10796E-5 1.55323E-5 SPO3218 K01462 nan Peptide deformylase (Def) (PDB:1BS4)
Ruegeria pomeroyi DSS-3 3215 1.80399E-4 3.62306E-4 5.21506E-5 3.60798E-4 SPO3219 K01462 nan Peptide deformylase (Def) (PDB:1BS4)
Ruegeria pomeroyi DSS-3 3216 0.001441947 0.002873019 0.001693537 0.001425518 SPO3220 K14155 Methionine biosynthesis, aspartate => homoserine => methionine Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities (MalY) (PDB:4DGT)
Ruegeria pomeroyi DSS-3 3217 4.02415E-5 1.89372E-5 7.57488E-5 SPO3221 nan
Ruegeria pomeroyi DSS-3 3218 SPO3222 K07393 nan Glutathionyl-hydroquinone reductase (ECM4) (PDB:6GCA)
Ruegeria pomeroyi DSS-3 3219 SPO3223 nan DNA-binding response regulator, ActR/RegA family, consists of REC and Fis-type HTH domains (PDB:3RQI)
Ruegeria pomeroyi DSS-3 3220 7.09426E-5 2.59487E-5 6.06489E-5 6.00925E-5 SPO3224 K02225 Cobalamin biosynthesis, cobyrinate a,c-diamide => cobalamin Histidinol-phosphate/aromatic aminotransferase or cobyric acid decarboxylase (HisC) (PDB:4R2N)
Ruegeria pomeroyi DSS-3 3221 1.52549E-5 1.68284E-5 1.55541E-5 2.27329E-5 SPO3225 K02227 Cobalamin biosynthesis, cobyrinate a,c-diamide => cobalamin Cobalamin biosynthesis protein CobD/CbiB (CbiB)
Ruegeria pomeroyi DSS-3 3222 3.498E-4 7.47493E-4 4.32342E-4 4.63562E-4 SPO3226 K08305 nan Membrane-bound lytic murein transglycosylase B (MltB) (PDB:1D0K)
Ruegeria pomeroyi DSS-3 3223 SPO3227 nan
Ruegeria pomeroyi DSS-3 3224 2.75305E-4 0.003062435 0.001371277 4.69816E-4 SPO3228 K03529 nan Chromosome segregation ATPase Smc (Smc) (PDB:5XG3)
Ruegeria pomeroyi DSS-3 3225 SPO3229 nan
Ruegeria pomeroyi DSS-3 3226 1.1612E-5 5.21212E-5 2.45901E-5 7.74131E-6 SPO3230 K05825 nan DNA-binding transcriptional regulator, MocR family, contains an aminotransferase domain (ARO8) (PDB:2R2N)
Ruegeria pomeroyi DSS-3 3227 9.11722E-5 7.98344E-5 5.5061E-5 3.57539E-5 SPO3231 K05799 nan DNA-binding transcriptional regulator, FadR family (FadR) (PDB:1E2X)
Ruegeria pomeroyi DSS-3 3228 SPO3232 K07038 nan
Ruegeria pomeroyi DSS-3 3229 0.0022921 0.003992988 0.009970969 0.001591655 SPO3233 K02109 F-type ATPase, prokaryotes and chloroplasts FoF1-type ATP synthase, membrane subunit b or b' (AtpF) (PDB:1B9U)
Ruegeria pomeroyi DSS-3 3230 8.04047E-4 0.002600972 0.002553732 0.001329964 SPO3234 K02109 F-type ATPase, prokaryotes and chloroplasts FoF1-type ATP synthase, membrane subunit b or b' (AtpF) (PDB:1B9U)
Ruegeria pomeroyi DSS-3 3231 SPO3235 K02110 F-type ATPase, prokaryotes and chloroplasts FoF1-type ATP synthase, membrane subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K (AtpE) (PDB:1C17)
Ruegeria pomeroyi DSS-3 3232 3.43237E-5 5.21212E-5 4.39773E-5 SPO3236 K02108 F-type ATPase, prokaryotes and chloroplasts FoF1-type ATP synthase, membrane subunit a (AtpB) (PUBMED:22931285)
Ruegeria pomeroyi DSS-3 3233 SPO3237 K02116 nan FoF1-type ATP synthase AtpZ/Atp1/AtpQ subunit, putative Ca2+/Mg2+ transporter (AtpZ) (PUBMED:12917488;23123906)
Ruegeria pomeroyi DSS-3 3234 SPO3238 K03892 nan DNA-binding transcriptional regulator, ArsR family (ArsR) (PDB:3F6V)
Ruegeria pomeroyi DSS-3 3235 SPO3239 nan Permease of the drug/metabolite transporter (DMT) superfamily (RhaT) (PDB:5I20)
Ruegeria pomeroyi DSS-3 3236 1.88075E-4 2.51707E-4 4.13765E-5 2.15659E-4 SPO3240 nan DNA-binding transcriptional regulator, LysR family (LysR) (PDB:2FYI)
Ruegeria pomeroyi DSS-3 3237 1.99299E-5 2.21443E-6 5.53607E-6 SPO3241 K01779 nan Amino acid racemase YgeA (RacX) (PDB:5ELL)
Ruegeria pomeroyi DSS-3 3238 6.60776E-5 7.4023E-6 5.48199E-5 5.57989E-5 SPO3242 K19055 nan Predicted aminoacyl-tRNA deacylase, YbaK-like aminoacyl-tRNA editing domain (ProX) (PDB:5VXB)
Ruegeria pomeroyi DSS-3 3239 5.09952E-5 1.56363E-4 6.38095E-5 2.14441E-5 SPO3243 K03517 NAD biosynthesis, aspartate => quinolinate => NAD Quinolinate synthase (NadA) (PDB:4HHE) (PUBMED:24498065)
Ruegeria pomeroyi DSS-3 3240 3.32594E-4 9.07671E-4 3.85986E-4 2.62882E-4 SPO3244 K00278 NAD biosynthesis, aspartate => quinolinate => NAD Aspartate oxidase (NadB) (PDB:1KNP)
Ruegeria pomeroyi DSS-3 3241 6.32919E-5 3.39077E-4 4.4142E-5 4.80369E-5 SPO3245 K00767 NAD biosynthesis, aspartate => quinolinate => NAD Nicotinate-nucleotide pyrophosphorylase (NadC) (PDB:1O4U)
Ruegeria pomeroyi DSS-3 3242 9.86368E-4 0.003887598 8.25204E-4 9.82779E-4 SPO3246 K03106 nan Signal recognition particle GTPase (Ffh) (PDB:2V3C)
Ruegeria pomeroyi DSS-3 3243 7.62748E-5 1.05513E-4 7.83089E-5 7.83089E-5 SPO3247 K03790 nan Protein N-acetyltransferase, RimJ/RimL family (RimL) (PDB:1S7F)
Ruegeria pomeroyi DSS-3 3244 2.00543E-5 6.7921E-6 1.23411E-5 2.77675E-5 SPO3248 K03790 nan Protein N-acetyltransferase, RimJ/RimL family (RimL) (PDB:1S7F)
Ruegeria pomeroyi DSS-3 3245 3.24958E-6 SPO3249 K03790 nan Protein N-acetyltransferase, RimJ/RimL family (RimL) (PDB:1S7F)
Ruegeria pomeroyi DSS-3 3246 4.39343E-6 1.27716E-5 3.1929E-6 SPO3250 K03790 nan Protein N-acetyltransferase, RimJ/RimL family (RimL) (PDB:1S7F)
Ruegeria pomeroyi DSS-3 3247 2.4713E-5 5.46637E-5 2.65436E-5 1.73906E-5 SPO3251 K03790 nan Protein N-acetyltransferase, RimJ/RimL family (RimL) (PDB:1S7F)
Ruegeria pomeroyi DSS-3 3248 SPO3252 K04092 Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine Chorismate mutase (PheA) (PDB:1ECM)
Ruegeria pomeroyi DSS-3 3249 9.62198E-4 0.001020812 0.005363193 0.001614253 SPO3253 K02959 nan Ribosomal protein S16 (RpsP) (PDB:4V4H)
Ruegeria pomeroyi DSS-3 3250 2.60274E-6 2.60274E-6 SPO3254 K04719 nan Nitroreductase (NfnB) (PDB:1F5V)
Ruegeria pomeroyi DSS-3 3251 3.2885E-5 3.3234E-5 1.86348E-5 7.23469E-5 SPO3255 K02860 nan Ribosomal 30S subunit maturation factor RimM, required for 16S rRNA processing (RimM) (PDB:2QGG)
Ruegeria pomeroyi DSS-3 3252 0.001301479 0.00107039 0.002470051 0.001218726 SPO3256 K02909 nan Ribosomal protein L31 (RpmE) (PDB:1VS6)
Ruegeria pomeroyi DSS-3 3253 0.014661346 0.002838151 0.024524225 0.013200473 SPO3257 K02884 nan Ribosomal protein L19 (RplS) (PDB:1VS6) (PUBMED:27941785)
Ruegeria pomeroyi DSS-3 3254 2.47028E-4 0.001439052 4.85891E-4 2.30015E-4 SPO3258 K07273 nan Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family (Acm) (PDB:1H09)
Ruegeria pomeroyi DSS-3 3255 3.27699E-5 4.97199E-5 2.86266E-5 SPO3259 K00554 nan tRNA G37 N-methylase TrmD (TrmD) (PDB:1P9P)
Ruegeria pomeroyi DSS-3 3256 5.5974E-5 1.23311E-4 7.39278E-5 4.29486E-5 SPO3260 K05303 nan tRNA 5-hydroxyU34 O-methylase TrmR/YrrM (TrmR) (PDB:1H1D) (PUBMED:29982645)
Ruegeria pomeroyi DSS-3 3257 SPO3261 K00799 nan Glutathione S-transferase (GstA) (PDB:1A0F)
Ruegeria pomeroyi DSS-3 3258 SPO3262 nan DNA-binding transcriptional regulator, MarR family (MarR) (PDB:1JGS)
Ruegeria pomeroyi DSS-3 3259 SPO3263 nan Lipopolysaccharide export LptBFGC system, permease protein LptF (LptF) (PDB:6S8H)
Ruegeria pomeroyi DSS-3 3260 SPO_tRNA-Met-3 nan
Ruegeria pomeroyi DSS-3 3261 SPO_Sp5SE nan
Ruegeria pomeroyi DSS-3 3262 SPO_Sp23SB nan
Ruegeria pomeroyi DSS-3 3263 SPO_tRNA-Ala-2 nan
Ruegeria pomeroyi DSS-3 3264 SPO_tRNA-Ile-2 nan
Ruegeria pomeroyi DSS-3 3265 SPO_Sp16SB nan
Ruegeria pomeroyi DSS-3 3266 SPO3270 K17247 nan Heme-binding membrane subunit of periplasmic DMSO/TMAO and protein-methionine-sulfoxide reductases (MsrQ) (PUBMED:26641313)
Ruegeria pomeroyi DSS-3 3267 9.18361E-6 9.53437E-6 1.83672E-6 1.19387E-5 SPO3271 K07147 nan Molybdopterin-dependent catalytic subunit of periplasmic DMSO/TMAO and protein-methionine-sulfoxide reductases (MsrP) (PDB:1OGP) (PUBMED:26641313;32750406)
Ruegeria pomeroyi DSS-3 3268 4.93533E-4 0.001112229 4.28526E-4 4.41701E-4 SPO3272 K22083 nan Glutamate synthase domain 2 (GltB2) (PDB:1EA0)
Ruegeria pomeroyi DSS-3 3269 3.00098E-6 SPO3273 nan Uncharacterized conserved protein, DUF302 family (PDB:1J3M)
Ruegeria pomeroyi DSS-3 3270 SPO3274 nan
Ruegeria pomeroyi DSS-3 3271 SPO3275 nan
Ruegeria pomeroyi DSS-3 3272 2.67662E-4 0.002470349 6.3882E-4 1.97125E-4 SPO3276 K03695 nan ATP-dependent Clp protease, ATP-binding subunit ClpA (ClpA) (PDB:1KSF)
Ruegeria pomeroyi DSS-3 3273 SPO3277 nan
Ruegeria pomeroyi DSS-3 3274 1.70475E-4 9.47079E-4 3.40186E-4 3.08913E-4 SPO3278 K01591 Uridine monophosphate biosynthesis, glutamine (+ PRPP) => UMP Orotidine-5'-phosphate decarboxylase (PyrF) (PDB:1DBT)
Ruegeria pomeroyi DSS-3 3275 SPO3279 K03574 nan ADP-ribose pyrophosphatase YjhB, NUDIX family (YjhB) (PDB:3GZ5)
Ruegeria pomeroyi DSS-3 3276 8.49919E-6 3.81374E-6 8.49919E-6 3.26893E-6 SPO3280 K02346 nan Nucleotidyltransferase/DNA polymerase DinP involved in DNA repair (DinP) (PDB:4R8U) (PUBMED:16544291)
Ruegeria pomeroyi DSS-3 3277 3.32836E-6 1.33134E-5 SPO3281 nan Bacillithiol/mycothiol S-transferase BstA/DinB, DinB/YfiT family (unrelated to E. coli DinB) (DinB) (PDB:2QE9) (PUBMED:22059487;24821014)
Ruegeria pomeroyi DSS-3 3278 9.60106E-6 4.80052E-6 1.53616E-5 SPO3282 K01458 Histidine degradation, histidine => N-formiminoglutamate => glutamate N-formylglutamate amidohydrolase (HutG)
Ruegeria pomeroyi DSS-3 3279 SPO_tRNA-Val-4 nan
Ruegeria pomeroyi DSS-3 3280 SPO3284 K02919 nan Ribosomal protein L36 (RpmJ) (PDB:1DFE) (PUBMED:21627333)
Ruegeria pomeroyi DSS-3 3281 SPO3285 nan
Ruegeria pomeroyi DSS-3 3282 SPO3286 nan Arylsulfatase A or related enzyme, AlkP superfamily (AslA) (PDB:1E1Z)
Ruegeria pomeroyi DSS-3 3283 0.003406011 1.02359E-4 1.52113E-5 5.66488E-4 SPO3287 K02012 nan ABC-type Fe3+ transport system, periplasmic component (AfuA) (PDB:6IVY)
Ruegeria pomeroyi DSS-3 3284 SPO3288 K02011 nan ABC-type Fe3+ transport system, permease component (FbpB)
Ruegeria pomeroyi DSS-3 3285 1.356E-6 1.3173E-4 1.469E-4 4.407E-5 SPO3289 K01912 Phenylacetate degradation, phenylaxetate => acetyl-CoA/succinyl-CoA Phenylacetate-coenzyme A ligase PaaK, adenylate-forming domain family (PaaK) (PDB:2Y4O)
Ruegeria pomeroyi DSS-3 3286 2.34382E-5 1.25113E-5 SPO3290 K01996 nan ABC-type branched-chain amino acid transport system, ATPase component LivF (LivF) (PDB:1JI0) (PUBMED:26527648;32250026)
Ruegeria pomeroyi DSS-3 3287 3.21533E-5 0.005202841 0.005208411 3.21533E-5 SPO3291 nan ABC-type branched-chain amino acid transport system, periplasmic component (LivK) (PDB:1USG)
Ruegeria pomeroyi DSS-3 3288 SPO3292 K01998 nan ABC-type branched-chain amino acid transport system, permease component (LivM)
Ruegeria pomeroyi DSS-3 3289 SPO3293 nan
Ruegeria pomeroyi DSS-3 3290 SPO3294 K01997 nan Branched-chain amino acid ABC-type transport system, permease component (LivH)
Ruegeria pomeroyi DSS-3 3291 2.68052E-5 3.54912E-5 1.86796E-6 SPO3295 K01995 nan ABC-type branched-chain amino acid transport system, ATPase component LivG (LivG) (PDB:1G9X) (PUBMED:29514851)
Ruegeria pomeroyi DSS-3 3292 8.35889E-7 3.57065E-4 1.57704E-4 3.34355E-6 SPO3296 K01897 beta-Oxidation, acyl-CoA synthesis Long-chain acyl-CoA synthetase (AMP-forming) (FAA1)
Ruegeria pomeroyi DSS-3 3293 2.8241E-5 8.64449E-5 8.1392E-5 3.18616E-5 SPO3297 K13587 nan Signal transduction histidine kinase (BaeS) (PDB:1JOY)!!!CheY-like REC (receiver) domain, includes chemotaxis protein CheY  and sporulation regulator Spo0F (CheY) (PDB:6QRJ)
Ruegeria pomeroyi DSS-3 3294 1.58911E-4 5.21212E-5 1.34763E-4 1.62806E-4 SPO3298 K02483 nan DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain (OmpR) (PDB:1XHF)
Ruegeria pomeroyi DSS-3 3295 7.07706E-6 SPO3299 K16137 nan DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA (AcrR) (PDB:2QOP)
Ruegeria pomeroyi DSS-3 3296 1.5255E-5 2.11223E-5 SPO3300 K07136 nan Uncharacterized membrane protein YecN, MAPEG domain (YecN)
Ruegeria pomeroyi DSS-3 3297 4.76718E-6 SPO3301 nan DNA-binding transcriptional regulator, LysR family (LysR) (PDB:2FYI)
Ruegeria pomeroyi DSS-3 3298 9.22803E-5 1.80059E-5 1.12537E-4 SPO3302 nan Uncharacterized conserved protein, DUF1330 family
Ruegeria pomeroyi DSS-3 3299 1.1887E-5 4.47081E-5 1.10153E-4 6.10199E-5 SPO3303 nan Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK (TesA) (PDB:1BWP)
Ruegeria pomeroyi DSS-3 3300 1.87474E-4 6.30802E-4 2.95962E-4 1.79342E-4 SPO3304 K06016 Pyrimidine degradation, uracil => beta-alanine, thymine => 3-aminoisobutanoate Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase or related deacylase (ArgE) (PDB:1CG2)
Ruegeria pomeroyi DSS-3 3301 5.08499E-5 4.95787E-6 1.56787E-4 2.45775E-5 SPO3305 nan Broad specificity phosphatase PhoE (PhoE) (PDB:1EBB)
Ruegeria pomeroyi DSS-3 3302 1.56139E-4 4.6188E-4 1.39089E-4 1.33705E-4 SPO3306 K00799 nan Glutathione S-transferase (GstA) (PDB:1A0F)
Ruegeria pomeroyi DSS-3 3303 3.49121E-4 4.6421E-4 4.63402E-4 4.40389E-4 SPO3307 K00290 Lysine biosynthesis, AAA pathway, 2-oxoglutarate => 2-aminoadipate => lysine Alanine dehydrogenase (includes sporulation protein SpoVN) (Ald) (PDB:2EEZ)
Ruegeria pomeroyi DSS-3 3304 SPO3308 K15383 nan Sugar transporter, SemiSWEET family, contains PQ motif (SWEET) (PUBMED:24027245)
Ruegeria pomeroyi DSS-3 3305 9.89968E-4 0.003397276 0.002169738 0.001495308 SPO3309 nan Saccharopine dehydrogenase, NADP-dependent (Lys9) (PDB:1E5L)
Ruegeria pomeroyi DSS-3 3306 2.09211E-5 4.18422E-5 SPO3310 nan
Ruegeria pomeroyi DSS-3 3307 4.95787E-6 SPO3311 K10778 nan DNA repair enzyme Ada (O6-methylguanine-DNA--protein-cysteine methyltransferase) (AdaB) (PDB:6RLA) (PUBMED:29061663)!!!Methylphosphotriester-DNA--protein-cysteine methyltransferase (N-terminal fragment of Ada), contains Zn-binding and two AraC-type DNA-binding domains (AdaA) (PDB:1ADN)
Ruegeria pomeroyi DSS-3 3308 5.59947E-5 4.30089E-5 4.88159E-5 2.15364E-5 SPO3312 nan 2-Methylisocitrate lyase and related enzymes, PEP mutase family (PrpB) (PDB:1XG3)
Ruegeria pomeroyi DSS-3 3309 2.8476E-5 8.7171E-6 7.26425E-6 SPO3313 K23779 nan Transcriptional regulator, contains XRE-family HTH domain (HipB) (PDB:1ADR)
Ruegeria pomeroyi DSS-3 3310 0.00116768 0.002777359 0.001518495 0.001465377 SPO3314 K01687 Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine Dihydroxyacid dehydratase/phosphogluconate dehydratase (IlvD) (PDB:2GP4)
Ruegeria pomeroyi DSS-3 3311 SPO3315 K04761 nan DNA-binding transcriptional regulator, LysR family (LysR) (PDB:2FYI)
Ruegeria pomeroyi DSS-3 3312 SPO3316 K07086 nan Uncharacterized conserved protein Alr0986 (PUBMED:17567742)
Ruegeria pomeroyi DSS-3 3313 SPO3316a K00275 Pyridoxal-P biosynthesis, erythrose-4P => pyridoxal-P General stress protein 26 (function unknown) (YzzA) (PDB:2I02)
Ruegeria pomeroyi DSS-3 3314 SPO3317 nan DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA (AcrR) (PDB:2QOP)
Ruegeria pomeroyi DSS-3 3315 5.0476E-4 0.00100882 4.45535E-4 4.45535E-4 SPO3318 nan
Ruegeria pomeroyi DSS-3 3316 1.35987E-5 2.8476E-5 1.01119E-5 1.8829E-5 SPO3319 nan
Ruegeria pomeroyi DSS-3 3317 0.001827175 6.88785E-4 7.57046E-4 9.01611E-4 SPO3320 nan
Ruegeria pomeroyi DSS-3 3318 6.24067E-6 SPO3321 nan
Ruegeria pomeroyi DSS-3 3319 2.0793E-4 3.43896E-4 2.04668E-4 1.66752E-4 SPO3322 nan
Ruegeria pomeroyi DSS-3 3320 8.45055E-4 0.001328267 9.55032E-4 5.55707E-4 SPO3323 nan AAA+-type ATPase, SpoVK/Ycf46/Vps4 family (SpoVK) (PDB:3SYL)
Ruegeria pomeroyi DSS-3 3321 1.00118E-4 1.406E-4 7.50888E-5 7.31257E-5 SPO3324 nan
Ruegeria pomeroyi DSS-3 3322 0.003477113 0.008289805 0.003781533 0.002454733 SPO3325 nan
Ruegeria pomeroyi DSS-3 3323 1.4823E-4 1.77389E-4 1.053E-4 SPO3326 K06995 nan Predicted enzyme of the cupin superfamily (PDB:1LKN)
Ruegeria pomeroyi DSS-3 3324 1.356E-5 5.42399E-6 6.328E-6 SPO3327 K08688 nan Xaa-Pro aminopeptidase (PepP) (PDB:1A16)
Ruegeria pomeroyi DSS-3 3325 0.003512343 0.008711157 0.004072076 0.003692491 SPO3328 K00135 GABA (gamma-Aminobutyrate) shunt Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenase (AdhE) (PDB:1A4S)
Ruegeria pomeroyi DSS-3 3326 SPO3329 nan Hemoglobin-like flavoprotein (Hmp) (PDB:3OZU)
Ruegeria pomeroyi DSS-3 3327 2.8664E-4 0.001149104 2.0083E-4 3.3569E-4 SPO3330 K12573 nan Exoribonuclease R (VacB) (PDB:6H25)
Ruegeria pomeroyi DSS-3 3328 2.70531E-6 4.95787E-6 6.76331E-6 SPO3331 K09931 nan Uncharacterized conserved protein, glycosyltransferase A (GT-A) superfamily, DUF2064 family (PDB:3CGX)
Ruegeria pomeroyi DSS-3 3329 5.49902E-4 0.001019722 4.53313E-4 4.05622E-4 SPO3332 K01439 Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase or related deacylase (ArgE) (PDB:1CG2)
Ruegeria pomeroyi DSS-3 3330 SPO3333 nan Ca2+-binding protein, RTX toxin-related (PDB:1AF0) (PUBMED:15135544)
Ruegeria pomeroyi DSS-3 3331 SPO3334 nan
Ruegeria pomeroyi DSS-3 3332 SPO3335 K02030 nan ABC-type amino acid transport/signal transduction system, periplasmic component/domain (HisJ) (PDB:1GGG)
Ruegeria pomeroyi DSS-3 3333 4.37399E-5 1.02717E-4 9.23399E-5 6.64198E-5 SPO3336 nan
Ruegeria pomeroyi DSS-3 3334 0.001035452 0.001360732 0.001226167 8.26098E-4 SPO3337 K00674 Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine Tetrahydrodipicolinate N-succinyltransferase (DapD) (PDB:3BXY)
Ruegeria pomeroyi DSS-3 3335 SPO3338 K01012 Biotin biosynthesis, pimeloyl-ACP/CoA => biotin Biotin synthase or related enzyme (BioB) (PDB:1R30)
Ruegeria pomeroyi DSS-3 3336 SPO3339 K03523 nan Biotin transporter BioY (BioY) (PDB:4DVE)
Ruegeria pomeroyi DSS-3 3337 2.75969E-6 1.7938E-5 SPO3340 nan DNA-binding transcriptional regulator, GntR family (GntR) (PDB:3FMS)
Ruegeria pomeroyi DSS-3 3338 2.33312E-4 3.51854E-4 4.14576E-4 4.46283E-4 SPO3341 K01754 Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine Threonine deaminase (IlvA) (PDB:3IAU)
Ruegeria pomeroyi DSS-3 3339 0.00110402 0.001263 0.001029789 9.14669E-4 SPO3342 nan Nucleotide monophosphate nucleosidase PpnN/YdgH, Lonely Guy (LOG) family (PpnN) (PDB:2PMB) (PUBMED:25728768;27941785;31023582;31420341)
Ruegeria pomeroyi DSS-3 3340 SPO3343 nan
Ruegeria pomeroyi DSS-3 3341 9.73614E-5 2.95975E-4 1.38943E-4 1.14602E-4 SPO3344 nan Cystathionine beta-lyase/cystathionine gamma-synthase (MetC) (PDB:1CL1)
Ruegeria pomeroyi DSS-3 3342 SPO3345 K08972 nan
Ruegeria pomeroyi DSS-3 3343 8.73375E-5 3.53915E-4 1.42535E-4 1.31356E-4 SPO3346 K06941 nan Adenine C2-methylase RlmN of 23S rRNA A2503 and tRNA A37 (RlmN) (PDB:3RFA)
Ruegeria pomeroyi DSS-3 3344 8.45221E-4 4.52761E-4 9.83945E-4 6.59301E-4 SPO3347 nan Uncharacterized conserved protein YecT, DUF1311 family (YecT) (PDB:3GI7)
Ruegeria pomeroyi DSS-3 3345 9.4649E-4 3.97619E-4 0.001547314 6.58605E-4 SPO3348 nan Invasion protein IalB, involved in pathogenesis (IalB) (PDB:3DTD)
Ruegeria pomeroyi DSS-3 3346 5.19404E-4 0.003484489 9.36802E-4 4.99003E-4 SPO3349 nan L-asparaginase II (AnsA2)
Ruegeria pomeroyi DSS-3 3347 2.24424E-4 1.86873E-4 1.70738E-4 1.93621E-4 SPO3350 nan 5-chloro-2-hydroxyhydroquinone dehydrochlorinase TtfG, YCII superfamily (YCII) (PDB:1S7I) (PUBMED:23955343)
Ruegeria pomeroyi DSS-3 3348 3.43237E-5 3.12117E-5 6.10199E-5 SPO3351 nan Chalcone/flavanone-binding protein YndB, AHSA1/START/SRPBCC domain (YndB) (PDB:2KTE) (PUBMED:20818668)
Ruegeria pomeroyi DSS-3 3349 SPO3352 K03892 nan DNA-binding transcriptional regulator, ArsR family (ArsR) (PDB:3F6V)
Ruegeria pomeroyi DSS-3 3350 2.90956E-4 1.45942E-4 3.57633E-4 2.21247E-4 SPO3353 K01079 Serine biosynthesis, glycerate-3P => serine Phosphoserine phosphatase (SerB) (PDB:3N28)
Ruegeria pomeroyi DSS-3 3351 0.001187792 0.004043838 0.001627507 0.001366193 SPO3354 K00831 Serine biosynthesis, glycerate-3P => serine Phosphoserine aminotransferase (SerC) (PDB:1BJN)
Ruegeria pomeroyi DSS-3 3352 0.007213273 0.028773922 0.011822687 0.010659518 SPO3355 K00058 Serine biosynthesis, glycerate-3P => serine Phosphoglycerate dehydrogenase or related dehydrogenase (SerA) (PDB:3OET)
Ruegeria pomeroyi DSS-3 3353 SPO3356 nan
Ruegeria pomeroyi DSS-3 3354 SPO3357 nan DNA-binding transcriptional regulator, LysR family (LysR) (PDB:2FYI)
Ruegeria pomeroyi DSS-3 3355 9.00293E-6 1.06785E-5 5.62683E-6 1.05034E-5 SPO3358 K07313 nan 3',5'-cyclic AMP phosphodiesterase CpdA (CpdA) (PDB:2ZO9)
Ruegeria pomeroyi DSS-3 3356 1.58265E-6 1.58265E-6 SPO3359 K00060 nan Threonine dehydrogenase or related Zn-dependent dehydrogenase (Tdh) (PDB:4A2C)
Ruegeria pomeroyi DSS-3 3357 1.25447E-5 5.64228E-5 5.11079E-5 1.5797E-5 SPO3360 K00639 nan 7-keto-8-aminopelargonate synthetase or related enzyme (BioF) (PDB:1BS0)
Ruegeria pomeroyi DSS-3 3358 4.53206E-5 1.40161E-4 2.52818E-4 8.61981E-5 SPO3361 K09760 nan DNA anti-recombination protein (rearrangement mutator) RmuC (RmuC)
Ruegeria pomeroyi DSS-3 3359 7.51692E-6 2.22555E-4 2.18434E-4 6.8979E-5 SPO3362 K03572 nan DNA mismatch repair ATPase MutL (MutL) (PDB:1B62)
Ruegeria pomeroyi DSS-3 3360 SPO3363 K11709 nan ABC-type Mn2+/Zn2+ transport system, permease component (ZnuB)
Ruegeria pomeroyi DSS-3 3361 5.82047E-5 7.6275E-5 4.61529E-4 SPO3364 K11708 nan ABC-type Mn2+/Zn2+ transport system, permease component (ZnuB)
Ruegeria pomeroyi DSS-3 3362 6.34539E-4 0.001285478 0.008766979 5.27925E-5 SPO3365 K11710 nan ABC-type Mn2+/Zn2+ transport system, ATPase component (ZnuC)
Ruegeria pomeroyi DSS-3 3363 6.79977E-4 5.32065E-4 0.012221685 2.36765E-5 SPO3366 K11707 nan ABC-type Zn uptake system ZnuABC, Zn-binding component ZnuA (ZnuA) (PDB:1K0F)
Ruegeria pomeroyi DSS-3 3364 1.61081E-4 1.67296E-4 1.14621E-4 4.78514E-5 SPO3367 K01619 nan Deoxyribose-phosphate aldolase (DeoC) (PDB:1J2W)
Ruegeria pomeroyi DSS-3 3365 3.26892E-4 0.002126746 1.53374E-4 1.68924E-4 SPO3368 K00128 GABA biosynthesis, eukaryotes, putrescine => GABA Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenase (AdhE) (PDB:1A4S)
Ruegeria pomeroyi DSS-3 3366 5.21212E-5 1.6272E-5 1.017E-5 SPO3369 nan NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family (FabG) (PDB:6L1H)
Ruegeria pomeroyi DSS-3 3367 2.1287E-4 0.001237155 2.78788E-4 3.11118E-4 SPO3370 K07263 nan Predicted Zn-dependent peptidase, M16 family (PqqL) (PDB:6OFS)
Ruegeria pomeroyi DSS-3 3368 1.35155E-4 0.002106461 2.71124E-4 2.65008E-4 SPO3371 K07263 nan Predicted Zn-dependent peptidase, M16 family (PqqL) (PDB:6OFS)
Ruegeria pomeroyi DSS-3 3369 6.14213E-4 6.44014E-4 8.70979E-4 6.06024E-4 SPO3372 nan
Ruegeria pomeroyi DSS-3 3370 SPO3373 K03101 nan Lipoprotein signal peptidase (LspA) (PDB:5DIR)
Ruegeria pomeroyi DSS-3 3371 0.004489979 0.016644442 0.004313494 0.004305189 SPO3374 K00602 Inosine monophosphate biosynthesis, PRPP + glutamine => IMP AICAR transformylase/IMP cyclohydrolase PurH (PurH) (PDB:1G8M)
Ruegeria pomeroyi DSS-3 3372 1.04468E-4 0.001362584 1.99672E-4 2.18202E-4 SPO3375 nan Uncharacterized conserved protein, heparinase superfamily
Ruegeria pomeroyi DSS-3 3373 6.49148E-5 1.5255E-5 4.19782E-5 5.79905E-5 SPO3376 K03500 nan 16S rRNA C967 or C1407 C5-methylase, RsmB/RsmF family (RsmB) (PDB:2FRX)
Ruegeria pomeroyi DSS-3 3374 SPO3377 nan Uncharacterized conserved protein, DUF1674 domain
Ruegeria pomeroyi DSS-3 3375 SPO3378 K05782 nan Predicted benzoate:H+ symporter BenE (BenE)
Ruegeria pomeroyi DSS-3 3376 1.76522E-5 7.84541E-6 1.96135E-6 SPO3379 K03566 nan DNA-binding transcriptional regulator, LysR family (LysR) (PDB:2FYI)
Ruegeria pomeroyi DSS-3 3377 SPO3380 K24291 nan Taurine dioxygenase, alpha-ketoglutarate-dependent (TauD) (PDB:1DRT)
Ruegeria pomeroyi DSS-3 3378 SPO3381 K24290 nan Predicted HD phosphohydrolase (PDB:4MLN)
Ruegeria pomeroyi DSS-3 3379 0.001903782 0.007197386 0.003364628 0.002095058 SPO3382 nan Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenase (AdhE) (PDB:1A4S)
Ruegeria pomeroyi DSS-3 3380 0.014427967 0.01156634 0.04759888 0.013748031 SPO3383 nan Alkyl hydroperoxide reductase subunit AhpC (peroxiredoxin) (AhpC) (PDB:2RII)
Ruegeria pomeroyi DSS-3 3381 1.14412E-5 2.51917E-5 SPO3384 nan
Ruegeria pomeroyi DSS-3 3382 8.04657E-5 7.24192E-5 7.04075E-5 SPO3385 K07270 nan Glycosyltransferase involved in LPS biosynthesis, GR25 family
Ruegeria pomeroyi DSS-3 3383 SPO3386 nan
Ruegeria pomeroyi DSS-3 3384 SPO3387 K09471 GABA biosynthesis, prokaryotes, putrescine => GABA Glycine/D-amino acid oxidase (deaminating) (DadA) (PDB:3AWI)
Ruegeria pomeroyi DSS-3 3385 SPO3388 nan DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA (AcrR) (PDB:2QOP)
Ruegeria pomeroyi DSS-3 3386 0.01638499 0.091765404 0.03381655 0.020388586 SPO3389 K00962 nan Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) (Pnp) (PDB:1E3P)
Ruegeria pomeroyi DSS-3 3387 SPO3390 nan
Ruegeria pomeroyi DSS-3 3388 5.08137E-5 2.67098E-5 4.82079E-5 SPO3391 K00718 nan
Ruegeria pomeroyi DSS-3 3389 2.55432E-6 4.08691E-5 1.02173E-5 SPO3392 K06177 nan Pseudouridine synthase RluA, 23S rRNA- or tRNA-specific (RluA) (PDB:2I82)
Ruegeria pomeroyi DSS-3 3390 5.0476E-5 5.21212E-5 3.43237E-5 1.61523E-5 SPO3393 nan
Ruegeria pomeroyi DSS-3 3391 SPO3394 nan Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK (TesA) (PDB:1BWP)
Ruegeria pomeroyi DSS-3 3392 SPO3395 K05786 nan Membrane protein RarD, contains two EamA domains, drug/metabolite transporter family (RarD) (PUBMED:26335199)
Ruegeria pomeroyi DSS-3 3393 4.20633E-5 1.65956E-4 3.36506E-5 4.01565E-5 SPO3396 K17509 nan Glycine cleavage system protein T (aminomethyltransferase) (GcvT) (PDB:2GAH) (PUBMED:25433025;25505271)!!!Glycine/D-amino acid oxidase (deaminating) (DadA) (PDB:3AWI)
Ruegeria pomeroyi DSS-3 3394 SPO3397 nan Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH domain (GlxA)
Ruegeria pomeroyi DSS-3 3395 1.84288E-6 SPO3398 nan Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) (MHT1) (PDB:5DML)
Ruegeria pomeroyi DSS-3 3396 SPO3399 K00344 nan NADPH:quinone reductase or related Zn-dependent oxidoreductase (Qor) (PDB:2VCY)
Ruegeria pomeroyi DSS-3 3397 1.38137E-5 1.01835E-4 3.34673E-5 2.94243E-5 SPO3400 K00315 nan Glycine cleavage system protein T (aminomethyltransferase) (GcvT) (PDB:2GAH) (PUBMED:25433025;25505271)!!!Glycine/D-amino acid oxidase (deaminating) (DadA) (PDB:3AWI)
Ruegeria pomeroyi DSS-3 3398 SPO3401 nan Uncharacterized conserved protein (PDB:1X6M)
Ruegeria pomeroyi DSS-3 3399 SPO3402 K05834 nan Threonine/homoserine/homoserine lactone efflux protein (RhtB)
Ruegeria pomeroyi DSS-3 3400 SPO3403 nan Transcriptional regulator, contains XRE-family HTH domain (HipB) (PDB:1ADR)!!!Cupin domain protein related to quercetin dioxygenase (QdoI) (PDB:2H0V)
Ruegeria pomeroyi DSS-3 3401 SPO3404 nan Uncharacterized membrane protein YsdA, DUF1294 family (YsdA)
Ruegeria pomeroyi DSS-3 3402 4.57649E-5 1.98315E-5 6.10199E-5 2.92896E-5 SPO3405 K08968 nan GAF domain-containing protein, putative methionine-R-sulfoxide reductase (MsrC) (PDB:1F5M)
Ruegeria pomeroyi DSS-3 3403 1.80286E-5 4.46208E-5 1.80286E-5 1.10945E-5 SPO3406 K18301 Multidrug resistance, efflux pump MexJK-OprM DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA (AcrR) (PDB:2QOP)
Ruegeria pomeroyi DSS-3 3404 SPO3407 nan
Ruegeria pomeroyi DSS-3 3405 0.004506083 0.00668048 0.011943937 0.00437888 SPO3408 K00626 Ethylmalonyl pathway Acetyl-CoA acetyltransferase (PaaJ) (PDB:1AFW)
Ruegeria pomeroyi DSS-3 3406 SPO3409 K04749 nan Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) (SpoIIAA) (PDB:1AUZ)
Ruegeria pomeroyi DSS-3 3407 SPO3410 K04757 nan Anti-sigma regulatory factor (Ser/Thr protein kinase) (RsbW) (PDB:1TIL)
Ruegeria pomeroyi DSS-3 3408 5.29827E-4 0.002851662 8.73805E-4 5.40462E-4 SPO3411 nan Gamma-glutamyltranspeptidase (Ggt) (PDB:2Z8I) (PUBMED:16618936)
Ruegeria pomeroyi DSS-3 3409 SPO3412 K11940 nan Heat shock protein HspQ (HspQ) (PDB:5YCQ)
Ruegeria pomeroyi DSS-3 3410 SPO3413 K24180 nan Predicted permease, AEC (auxin efflux carrier) family (YfdV)
Ruegeria pomeroyi DSS-3 3411 1.37295E-4 2.31876E-4 1.13012E-4 6.35106E-5 SPO3414 nan Predicted transglycosylase, contains SLT domain (SLT)
Ruegeria pomeroyi DSS-3 3412 5.22829E-4 0.002829988 6.40709E-4 4.22517E-4 SPO3415 K03634 nan Outer membrane lipoprotein-sorting protein (LolA) (PDB:1IWL)
Ruegeria pomeroyi DSS-3 3413 4.45726E-5 0.004010572 2.49644E-4 2.27632E-4 SPO3416 K03466 nan DNA segregation ATPase FtsK/SpoIIIE or related protein (FtsK) (PDB:2IUT)
Ruegeria pomeroyi DSS-3 3414 2.55026E-4 0.001634824 3.90341E-4 3.18142E-4 SPO3417 K14267 Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine Aspartate/methionine/tyrosine aminotransferase (AspB) (PDB:2O0R)
Ruegeria pomeroyi DSS-3 3415 0.001084069 0.002105822 0.001178705 9.62927E-4 SPO3418 K01426 nan Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase (GatA) (PDB:3H0L)
Ruegeria pomeroyi DSS-3 3416 1.32065E-4 2.1357E-4 1.22475E-4 1.47319E-4 SPO3419 K03185 Ubiquinone biosynthesis, prokaryotes, chorismate (+ polyprenyl-PP) => ubiquinol 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases (UbiH) (PDB:1BF3)
Ruegeria pomeroyi DSS-3 3417 SPO3420 K21014 nan LPS sulfotransferase NodH (LpsS) (PDB:1TEX)
Ruegeria pomeroyi DSS-3 3418 2.21443E-4 SPO3421 K09791 nan RNA methyltransferase activator Trm112/YbaR (Trm112) (PDB:2KPI) (PUBMED:27986851;30010922)
Ruegeria pomeroyi DSS-3 3419 8.34036E-5 8.46651E-5 5.64576E-5 5.64576E-5 SPO3422 K07157 nan Uncharacterized conserved protein, LON_N-like domain, ASCH/PUA-like superfamily (LON/PUA) (PDB:1ZBO)
Ruegeria pomeroyi DSS-3 3420 0.001535533 0.003726789 0.005691107 0.002052797 SPO3423 K05838 nan Chaperedoxin CnoX, contains thioredoxin-like and TPR-like domains, YbbN/TrxSC family (CnoX) (PDB:3QDN) (PUBMED:21498507;29754824)
Ruegeria pomeroyi DSS-3 3421 3.81374E-6 SPO3424 K13730 nan Leucine-rich repeat (LRR) protein (LRR) (PDB:4OW2)
Ruegeria pomeroyi DSS-3 3422 0.001886492 0.004199661 0.003422936 0.002819258 SPO3425 K01142 nan Exonuclease III (XthA) (PDB:1AKO)
Ruegeria pomeroyi DSS-3 3423 3.01085E-4 9.88858E-4 3.72542E-4 2.89041E-4 SPO3426 nan DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain (OmpR) (PDB:1XHF)
Ruegeria pomeroyi DSS-3 3424 2.57191E-5 7.50036E-5 8.54783E-5 7.51402E-5 SPO3427 K01497 Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD GTP cyclohydrolase II (RibA) (PDB:2BZ0)
Ruegeria pomeroyi DSS-3 3425 SPO3428 nan L,D-peptidoglycan transpeptidase YkuD, ErfK/YbiS/YcfS/YnhG family (PUBMED:16647082)
Ruegeria pomeroyi DSS-3 3426 7.21981E-5 3.56666E-4 8.99519E-5 7.33818E-5 SPO3429 K06997 nan Pyridoxal 5'-phosphate homeostasis protein YggS, UPF0001 family (YggS) (PDB:3SY1) (PUBMED:26872910)
Ruegeria pomeroyi DSS-3 3427 0.70584726 0.5589228 0.39091378 0.22219908 SPO3430 K08720 nan
Ruegeria pomeroyi DSS-3 3428 9.44718E-4 0.002240701 0.001597413 0.001405637 SPO3431 nan
Ruegeria pomeroyi DSS-3 3429 0.001931795 0.009056051 0.003807297 0.002398468 SPO3432 K01869 nan Leucyl-tRNA synthetase (LeuS) (PDB:6LPF)
Ruegeria pomeroyi DSS-3 3430 1.95414E-4 1.19069E-4 1.86429E-4 1.61722E-4 SPO3433 K03643 nan Predicted lipoprotein involved in lipopolysaccharide assembly
Ruegeria pomeroyi DSS-3 3431 1.45324E-4 1.58906E-4 1.34351E-4 1.31139E-4 SPO3434 K02340 nan DNA polymerase III, delta subunit (HolA) (PDB:3ZH9)
Ruegeria pomeroyi DSS-3 3432 0.001679596 0.001019032 0.002001576 0.001755328 SPO3435 K00799 nan Glutathione S-transferase (GstA) (PDB:1A0F)
Ruegeria pomeroyi DSS-3 3433 1.37639E-6 1.5255E-5 1.88106E-5 1.55991E-5 SPO3436 nan Predicted flavoprotein YhiN (YhiN) (PDB:3V76)
Ruegeria pomeroyi DSS-3 3434 4.84926E-6 2.15786E-5 1.09108E-5 SPO3437 K03442 nan Small-conductance mechanosensitive channel MscK (MscK)
Ruegeria pomeroyi DSS-3 3435 SPO3438 nan
Ruegeria pomeroyi DSS-3 3436 2.3109E-5 3.62306E-4 6.70616E-5 4.53118E-5 SPO3439 nan Enoyl-CoA hydratase/carnithine racemase (CaiD) (PDB:1DCI)
Ruegeria pomeroyi DSS-3 3437 1.77934E-4 6.47065E-4 4.70097E-4 1.21552E-4 SPO3440 K16216 nan NADP-dependent 3-hydroxy acid dehydrogenase YdfG (YdfG) (PDB:3P19)
Ruegeria pomeroyi DSS-3 3438 0.002816163 0.004980216 0.001148086 0.001756363 SPO3441 nan
Ruegeria pomeroyi DSS-3 3439 2.72243E-4 0.001192333 3.30916E-4 2.08485E-4 SPO3442 K03592 nan Zn-dependent protease PmbA/TldA or its inactivated homolog (TldD) (PDB:3TV9) (PUBMED:12029038)
Ruegeria pomeroyi DSS-3 3440 3.81374E-6 SPO3443 nan Archaeal fructose-1,6-bisphosphatase or related enzyme, inositol monophosphatase family (SuhB) (PDB:1AWB)
Ruegeria pomeroyi DSS-3 3441 3.81374E-6 SPO3444 K02527 KDO2-lipid A biosynthesis, Raetz pathway, LpxL-LpxM type 3-deoxy-D-manno-octulosonic-acid transferase (KdtA) (PDB:2XCI)
Ruegeria pomeroyi DSS-3 3442 4.12297E-6 8.78876E-5 9.89513E-6 2.25389E-5 SPO3445 K00912 KDO2-lipid A biosynthesis, Raetz pathway, LpxL-LpxM type Tetraacyldisaccharide-1-P 4'-kinase (Lipid A 4'-kinase) (LpxK) (PDB:4EHW)
Ruegeria pomeroyi DSS-3 3443 0.001865229 0.003346738 0.001715978 0.002398741 SPO3446 nan Protein thiol-disulfide isomerase DsbC (DsbG) (PDB:2HI7)
Ruegeria pomeroyi DSS-3 3444 1.30757E-5 SPO3447 nan Uncharacterized conserved protein, DUF721 domain
Ruegeria pomeroyi DSS-3 3445 1.5255E-5 SPO3448 K03575 nan Adenine-specific DNA glycosylase, acts on AG and A-oxoG pairs (MutY) (PDB:1KG2)
Ruegeria pomeroyi DSS-3 3446 1.45671E-6 1.44922E-5 SPO3449 K00496 nan Fatty acid desaturase (DesA)
Ruegeria pomeroyi DSS-3 3447 SPO3450 K01768 nan Adenylate cyclase, class 3 (AcyC) (PDB:1AB8)
Ruegeria pomeroyi DSS-3 3448 1.75737E-5 1.4964E-6 SPO3451 K13581 nan DNA modification methylase (YhdJ) (PDB:1BOO)
Ruegeria pomeroyi DSS-3 3449 3.75507E-5 9.38767E-6 9.38767E-6 SPO3452 K03470 nan Ribonuclease HII (RnhB) (PDB:1EKE)
Ruegeria pomeroyi DSS-3 3450 8.68956E-6 1.06785E-5 3.12823E-5 1.96963E-5 SPO3452a nan
Ruegeria pomeroyi DSS-3 3451 5.89722E-5 SPO3453 nan
Ruegeria pomeroyi DSS-3 3452 6.12818E-5 9.93989E-6 2.35699E-6 2.67126E-5 SPO3454 nan DNA-binding winged helix-turn-helix (wHTH) domain (CadC1)
Ruegeria pomeroyi DSS-3 3453 3.87041E-5 6.20776E-5 3.52172E-5 5.92765E-6 SPO3455 K01768 nan Adenylate cyclase, class 3 (AcyC) (PDB:1AB8)!!!Uncharacterized conserved protein, DUF427 family (PDB:3DJM)
Ruegeria pomeroyi DSS-3 3454 SPO3456 nan Flagellar basal body rod protein FlgG (FlgG) (PDB:6JZR)
Ruegeria pomeroyi DSS-3 3455 SPO3457 K06601 nan Flagellar biosynthesis regulator FlbT (FlbT)
Ruegeria pomeroyi DSS-3 3456 SPO3458 K06602 nan Flagellar biosynthesis regulator FlaF (FlaF)
Ruegeria pomeroyi DSS-3 3457 SPO3459 K02406 nan Flagellin and related hook-associated protein FlgL (FlgL) (PDB:1IO1)
Ruegeria pomeroyi DSS-3 3458 SPO3460 K02423 nan
Ruegeria pomeroyi DSS-3 3459 SPO3461 K02395 nan Rod binding protein domain (FlgJ1)
Ruegeria pomeroyi DSS-3 3460 SPO3462 K02414 nan Flagellar hook-length control protein FliK (FliK) (PDB:2RRL)
Ruegeria pomeroyi DSS-3 3461 SPO3463 K02389 nan Flagellar hook-capping protein FlgD (FlgD) (PDB:6IEF)
Ruegeria pomeroyi DSS-3 3462 1.90027E-6 4.75068E-6 SPO3464 K07251 nan Predicted  kinase, aminoglycoside phosphotransferase (APT) family (YcbJ)
Ruegeria pomeroyi DSS-3 3463 SPO3465 K09471 GABA biosynthesis, prokaryotes, putrescine => GABA Glycine/D-amino acid oxidase (deaminating) (DadA) (PDB:3AWI)
Ruegeria pomeroyi DSS-3 3464 SPO3466 K11074 nan ABC-type spermidine/putrescine transport system, permease component II (PotC)
Ruegeria pomeroyi DSS-3 3465 1.80059E-6 SPO3467 K11075 nan ABC-type spermidine/putrescine transport system, permease component I (PotB)
Ruegeria pomeroyi DSS-3 3466 3.08272E-4 4.81295E-4 1.4596E-4 2.77275E-4 SPO3468 K11076 nan ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component (PotA) (PDB:1Z47)
Ruegeria pomeroyi DSS-3 3467 0.003441876 0.004748759 0.004457324 0.002558271 SPO3469 K11073 nan Spermidine/putrescine-binding periplasmic protein (PotD) (PDB:1POT)
Ruegeria pomeroyi DSS-3 3468 6.07499E-5 1.5255E-5 1.134E-5 2.349E-5 SPO3470 nan DNA-binding transcriptional regulator, GntR family (GntR) (PDB:3FMS)
Ruegeria pomeroyi DSS-3 3469 4.52718E-4 0.00194094 5.62198E-4 4.65934E-4 SPO3471 K12256 nan Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (BioA) (PDB:1MLY)
Ruegeria pomeroyi DSS-3 3470 8.95368E-4 0.002519104 0.001405425 0.0011082 SPO3472 K02052 nan ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component (PotA) (PDB:1Z47)
Ruegeria pomeroyi DSS-3 3471 0.004524188 0.021998936 0.010715911 0.005320523 SPO3473 K02055 nan Spermidine/putrescine-binding periplasmic protein (PotD) (PDB:1POT)
Ruegeria pomeroyi DSS-3 3472 6.23776E-5 2.45351E-4 2.10068E-5 6.55928E-5 SPO3474 K02054 nan ABC-type spermidine/putrescine transport system, permease component I (PotB)
Ruegeria pomeroyi DSS-3 3473 5.92719E-5 SPO3475 K02053 nan ABC-type spermidine/putrescine transport system, permease component II (PotC)
Ruegeria pomeroyi DSS-3 3474 SPO3476 nan
Ruegeria pomeroyi DSS-3 3475 SPO3477 nan Uncharacterized membrane protein
Ruegeria pomeroyi DSS-3 3476 SPO3478 K00104 nan FAD/FMN-containing lactate dehydrogenase/glycolate oxidase (GlcD) (PDB:1AHU)
Ruegeria pomeroyi DSS-3 3477 6.06827E-6 3.81374E-6 1.36536E-5 1.51707E-6 SPO3479 K11472 nan FAD/FMN-containing lactate dehydrogenase/glycolate oxidase (GlcD) (PDB:1AHU)
Ruegeria pomeroyi DSS-3 3478 1.24813E-6 8.11287E-6 2.49627E-6 SPO3480 K11473 nan Fe-S cluster-containing oxidoreductase, includes glycolate oxidase subunit GlcF (GlpC)
Ruegeria pomeroyi DSS-3 3479 SPO3481 nan Predicted arabinose efflux permease AraJ, MFS family (AraJ) (PDB:4LDS)
Ruegeria pomeroyi DSS-3 3480 SPO3482 K04775 nan V8-like Glu-specific endopeptidase (eMpr)
Ruegeria pomeroyi DSS-3 3481 SPO3483 K04775 nan V8-like Glu-specific endopeptidase (eMpr)
Ruegeria pomeroyi DSS-3 3482 2.81377E-6 3.16834E-5 SPO3484 K04080 nan Small heat shock protein IbpA, HSP20 family (IbpA) (PDB:1GME)
Ruegeria pomeroyi DSS-3 3483 4.22445E-6 SPO3485 nan
Ruegeria pomeroyi DSS-3 3484 2.36715E-6 SPO3486 nan Glutathione S-transferase (GstA) (PDB:1A0F)
Ruegeria pomeroyi DSS-3 3485 SPO3487 nan Predicted DNA-binding transcriptional regulator YobV, contains HTH and WYL domains (YobV)
Ruegeria pomeroyi DSS-3 3486 1.31128E-4 0.00102971 4.07232E-4 2.79566E-4 SPO3488 K08305 nan Membrane-bound lytic murein transglycosylase B (MltB) (PDB:1D0K)
Ruegeria pomeroyi DSS-3 3487 0.002701162 0.03752073 0.003899766 0.003912842 SPO3489 K01890 nan Phenylalanyl-tRNA synthetase beta subunit (PheT) (PDB:3L4G)!!!tRNA-binding EMAP/Myf domain (EMAP) (PDB:1MKH)
Ruegeria pomeroyi DSS-3 3488 SPO3490 nan DNA-binding transcriptional regulator, LysR family (LysR) (PDB:2FYI)
Ruegeria pomeroyi DSS-3 3489 7.97617E-5 4.57889E-5 7.23522E-5 1.08964E-4 SPO3491 K15256 nan Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG (UbiE) (PDB:4OBW)
Ruegeria pomeroyi DSS-3 3490 5.11587E-4 2.25011E-4 1.98315E-4 4.06436E-4 SPO3492 nan Nucleoside 2-deoxyribosyltransferase (RCL) (PDB:1F8X)
Ruegeria pomeroyi DSS-3 3491 SPO3493 nan Cyanate permease (CynX)
Ruegeria pomeroyi DSS-3 3492 SPO3494 K11209 nan Glutathione S-transferase (GstA) (PDB:1A0F)
Ruegeria pomeroyi DSS-3 3493 4.76718E-5 3.45637E-5 6.14466E-5 SPO3495 K03282 nan Large-conductance mechanosensitive channel (MscL) (PDB:2OAR)
Ruegeria pomeroyi DSS-3 3494 5.32786E-5 1.62976E-4 9.83603E-5 1.22268E-4 SPO3496 K03442 nan Small-conductance mechanosensitive channel (MscS) (PDB:2OAU)
Ruegeria pomeroyi DSS-3 3495 SPO_tRNA-Met-4 nan
Ruegeria pomeroyi DSS-3 3496 0.13158523 0.28775373 0.36278346 0.0947776 SPO3498 K02358 nan Translation elongation factor EF-Tu, a GTPase (TufA) (PDB:1EFU)
Ruegeria pomeroyi DSS-3 3497 5.52428E-4 9.5431E-4 6.6833E-4 4.70106E-4 SPO3498a nan
Ruegeria pomeroyi DSS-3 3498 0.013526548 0.06331545 0.027694715 0.020740267 SPO3499 K02355 nan Translation elongation factor EF-G, a GTPase (FusA) (PDB:1DAR)
Ruegeria pomeroyi DSS-3 3499 0.019476488 0.008329508 0.024852691 0.011863672 SPO3500 K02992 nan Ribosomal protein S7 (RpsG) (PDB:4V4H)
Ruegeria pomeroyi DSS-3 3500 0.001225607 5.42823E-4 7.63493E-4 0.001382621 SPO3501 K02950 nan Ribosomal protein S12 (RpsL) (PDB:4V4H)
Ruegeria pomeroyi DSS-3 3501 2.33351E-4 2.47087E-4 6.50432E-5 1.32768E-4 SPO3502 nan
Ruegeria pomeroyi DSS-3 3502 1.31722E-4 2.00349E-4 1.12133E-4 1.76305E-4 SPO3503 nan
Ruegeria pomeroyi DSS-3 3503 SPO3504 K15270 nan Permease of the drug/metabolite transporter (DMT) superfamily (RhaT) (PDB:5I20)
Ruegeria pomeroyi DSS-3 3504 SPO3505 nan Predicted arabinose efflux permease AraJ, MFS family (AraJ) (PDB:4LDS)
Ruegeria pomeroyi DSS-3 3505 SPO3506 K07726 nan Transcriptional regulator, contains XRE-family HTH domain (HipB) (PDB:1ADR)
Ruegeria pomeroyi DSS-3 3506 0.017550599 0.20598607 0.0259442 0.018467257 SPO3507 K03046 nan DNA-directed RNA polymerase, beta' subunit/160 kD subunit (RpoC) (PDB:1NT9)!!!Ribosomal protein L27 (RpmA) (PDB:1VS6)
Ruegeria pomeroyi DSS-3 3507 0.025137886 0.23826094 0.038595293 0.027991252 SPO3508 K03043 nan DNA-directed RNA polymerase, beta subunit/140 kD subunit (RpoB) (PDB:5UAJ)
Ruegeria pomeroyi DSS-3 3508 0.005124938 0.035207707 0.030778915 0.006128836 SPO3509 K02935 nan Ribosomal protein L7/L12 (RplL) (PDB:1CTF)
Ruegeria pomeroyi DSS-3 3509 7.25701E-4 6.63082E-4 0.001127527 6.5479E-4 SPO3510 K02864 nan Ribosomal protein L10 (RplJ) (PDB:5IT8)
Ruegeria pomeroyi DSS-3 3510 4.01186E-5 1.76765E-4 2.25853E-5 1.14115E-4 SPO3511 nan
Ruegeria pomeroyi DSS-3 3511 1.12553E-4 6.69305E-5 1.6236E-4 1.28077E-4 SPO3512 nan
Ruegeria pomeroyi DSS-3 3512 0.00743522 0.009876197 0.022164417 0.005163544 SPO3513 K02863 nan Ribosomal protein L1 (RplA) (PDB:3J65)
Ruegeria pomeroyi DSS-3 3513 0.003150963 0.005002008 0.00720424 0.003266511 SPO3514 K02867 nan Ribosomal protein L11 (RplK) (PDB:2E34)
Ruegeria pomeroyi DSS-3 3514 SPO3515 nan Ca2+-binding protein, RTX toxin-related (PDB:1AF0) (PUBMED:15135544)
Ruegeria pomeroyi DSS-3 3515 0.001435001 9.09511E-4 0.0035164 0.001759234 SPO3516 K02601 nan Transcription termination/antitermination protein NusG (NusG) (PDB:3EWG) (PUBMED:19500594)
Ruegeria pomeroyi DSS-3 3516 SPO3517 K03073 nan Preprotein translocase subunit SecE (SecE) (PDB:5MG3) (PUBMED:29684280)
Ruegeria pomeroyi DSS-3 3517 3.81374E-6 SPO3518 nan Cupin domain protein related to quercetin dioxygenase (QdoI) (PDB:2H0V)
Ruegeria pomeroyi DSS-3 3518 SPO3519 nan Cytochrome oxidase maturation protein, CcoS/FixS family (FixS)
Ruegeria pomeroyi DSS-3 3519 4.92367E-6 1.11098E-5 4.92367E-6 SPO3520 K01533 nan Cation-transporting P-type ATPase (ZntA) (PDB:4BBJ)
Ruegeria pomeroyi DSS-3 3520 3.25172E-5 1.5255E-5 1.44521E-5 SPO3521 nan Nitrogen fixation protein FixH (FixH)
Ruegeria pomeroyi DSS-3 3521 2.27765E-4 3.64736E-4 2.37785E-4 1.02513E-4 SPO3522 nan Polyferredoxin NapH (NapH) (PUBMED:27322068)
Ruegeria pomeroyi DSS-3 3522 7.05542E-5 1.70347E-4 1.25218E-4 6.16555E-5 SPO3523 K00406 Cytochrome c oxidase, cbb3-type Cytochrome c, mono- and diheme variants (CccA) (PDB:1A2S)
Ruegeria pomeroyi DSS-3 3523 3.98976E-5 2.8163E-5 SPO3524 K00407 Cytochrome c oxidase, cbb3-type Cbb3-type cytochrome oxidase, subunit 3 (CcoQ)
Ruegeria pomeroyi DSS-3 3524 2.26933E-6 1.5255E-5 3.29054E-5 SPO3525 K00405 Cytochrome c oxidase, cbb3-type Cbb3-type cytochrome oxidase, cytochrome c subunit FixO (CcoO) (PDB:3MK7)
Ruegeria pomeroyi DSS-3 3525 1.0265E-6 1.0265E-6 SPO3526 K00404 Cytochrome c oxidase, cbb3-type Cbb3-type cytochrome oxidase, subunit 1 (CcoN) (PDB:3MK7)
Ruegeria pomeroyi DSS-3 3526 0.003011627 0.006227841 0.004536467 0.002147506 SPO3527 nan Nucleotide-binding universal stress protein,  UspA family (UspA) (PDB:1JMV)
Ruegeria pomeroyi DSS-3 3527 SPO3528 nan Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family (YeaQ)
Ruegeria pomeroyi DSS-3 3528 4.58711E-5 5.00872E-5 4.88442E-5 1.10855E-4 SPO3529 K00600 Photorespiration Glycine/serine hydroxymethyltransferase (GlyA) (PDB:1BJ4)
Ruegeria pomeroyi DSS-3 3529 SPO3530 K03566 nan DNA-binding transcriptional regulator, LysR family (LysR) (PDB:2FYI)
Ruegeria pomeroyi DSS-3 3530 5.02488E-4 1.72753E-4 4.82477E-4 2.3568E-4 SPO3531 K01420 nan cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases (Crp) (PDB:1FT9)
Ruegeria pomeroyi DSS-3 3531 4.87077E-6 1.34274E-6 3.04423E-5 5.68255E-6 SPO3532 K02495 Heme biosynthesis, plants and bacteria, glutamate => heme Coproporphyrinogen-III oxidase HemN  (oxygen-independent) or related Fe-S oxidoreductase (HemN) (PDB:1OLT)
Ruegeria pomeroyi DSS-3 3532 0.002058599 0.001394558 0.001304711 2.66368E-4 SPO3533 nan Translation elongation factor EF-G, a GTPase (FusA) (PDB:1DAR)
Ruegeria pomeroyi DSS-3 3533 5.22033E-5 1.85371E-4 1.42689E-5 1.98373E-5 SPO3534 K13896 nan ABC-type microcin C transport system, duplicated ATPase component YejF (YejF) (PUBMED:17873039)
Ruegeria pomeroyi DSS-3 3534 3.81374E-6 1.49233E-6 SPO3535 K13895 nan ABC-type microcin C transport system, permease component YejE (YejE)
Ruegeria pomeroyi DSS-3 3535 6.05156E-6 4.39343E-6 1.51289E-6 SPO3536 K13894 nan ABC-type microcin C transport system, permease component YejB (YejB) (PUBMED:17873039)
Ruegeria pomeroyi DSS-3 3536 5.82334E-4 0.003665006 8.52672E-4 5.92252E-4 SPO3537 K13893 nan ABC-type oligopeptide transport system, periplasmic component (OppA) (PDB:1B05)
Ruegeria pomeroyi DSS-3 3537 1.2095E-4 3.33067E-4 7.78003E-4 9.3709E-5 SPO3538 K08738 nan Cytochrome c2 (Cyc7) (PDB:1YEA)
Ruegeria pomeroyi DSS-3 3538 4.09951E-4 5.61296E-4 3.13264E-4 6.56823E-4 SPO3539 K04518 Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine Prephenate dehydratase (PheA2) (PDB:1PHZ)
Ruegeria pomeroyi DSS-3 3539 5.20464E-5 4.96834E-5 6.46093E-5 5.38411E-5 SPO3540 nan
Ruegeria pomeroyi DSS-3 3540 1.67945E-6 7.37325E-5 6.71778E-6 2.51917E-5 SPO3541 K03426 nan NADH pyrophosphatase NudC, Nudix superfamily (NPY1)
Ruegeria pomeroyi DSS-3 3541 3.52603E-4 7.15712E-4 4.70725E-4 2.58869E-4 SPO3542 K01119 nan 2',3'-cyclic-nucleotide 2'-phosphodiesterase/5'- or 3'-nucleotidase, 5'-nucleotidase family (UshA) (PDB:1HO5)
Ruegeria pomeroyi DSS-3 3542 SPO3543 nan
Ruegeria pomeroyi DSS-3 3543 SPO3544 nan Predicted alpha/beta hydrolase
Ruegeria pomeroyi DSS-3 3544 SPO3545 K18939 nan DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA (AcrR) (PDB:2QOP)
Ruegeria pomeroyi DSS-3 3545 8.6355E-5 2.47894E-5 4.98077E-5 7.11539E-5 SPO3546 K07054 nan Predicted metalloprotease (YpfJ)
Ruegeria pomeroyi DSS-3 3546 1.49436E-5 SPO3547 nan
Ruegeria pomeroyi DSS-3 3547 5.32537E-5 2.4408E-5 2.16343E-5 5.32537E-5 SPO3548 nan Protein-tyrosine phosphatase (CDC14) (PDB:1D5R)
Ruegeria pomeroyi DSS-3 3548 SPO3549 nan
Ruegeria pomeroyi DSS-3 3549 0.001402149 0.003071208 0.001414237 0.00138692 SPO3550 K02343 nan DNA polymerase III, gamma/tau subunits (DnaX) (PDB:1A5T)
Ruegeria pomeroyi DSS-3 3550 1.74898E-5 1.39918E-5 2.27367E-5 SPO3551 nan Predicted N-acetyltransferase YhbS (yhbS) (PDB:4ZBG)
Ruegeria pomeroyi DSS-3 3551 3.95662E-6 1.75737E-5 1.74092E-5 1.58265E-5 SPO3552 nan Glycine/D-amino acid oxidase (deaminating) (DadA) (PDB:3AWI)
Ruegeria pomeroyi DSS-3 3552 2.48497E-6 4.95787E-6 4.96994E-6 SPO3553 K15461 nan tRNA U34 5-methylaminomethyl-2-thiouridine-forming methyltransferase MnmC (MnmC) (PDB:3AWI)
Ruegeria pomeroyi DSS-3 3553 SPO3554 K15270 nan Permease of the drug/metabolite transporter (DMT) superfamily (RhaT) (PDB:5I20)
Ruegeria pomeroyi DSS-3 3554 6.6962E-4 0.001333539 0.001440361 6.03165E-4 SPO3555 K08309 nan Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain) (MltE) (PDB:153L)
Ruegeria pomeroyi DSS-3 3555 0.001382416 0.001850788 0.002251002 0.001190519 SPO3556 K01714 Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine 4-hydroxy-tetrahydrodipicolinate synthase/N-acetylneuraminate lyase (DapA) (PDB:2R91) (PUBMED:27574185)
Ruegeria pomeroyi DSS-3 3556 SPO3557 K21309 nan DMSO reductase anchor subunit DmsC (DmsC)
Ruegeria pomeroyi DSS-3 3557 SPO3558 K21308 nan Fe-S-cluster-containing dehydrogenase component (DMSO reductase) (HybA) (PDB:2VPW)
Ruegeria pomeroyi DSS-3 3558 1.23411E-6 2.32211E-6 5.80527E-7 SPO3559 K21307 nan Anaerobic selenocysteine-containing dehydrogenase (BisC) (PDB:1EU1)
Ruegeria pomeroyi DSS-3 3559 SPO3560 nan Phosphotransacetylase (includes Pta, EutD and phosphobutyryltransferase) (Pta) (PDB:1QZT) (PUBMED:28754323)
Ruegeria pomeroyi DSS-3 3560 9.21441E-7 3.81374E-6 4.60721E-6 2.3036E-6 SPO3561 K03852 nan Acetolactate synthase large subunit or other thiamine pyrophosphate-requiring enzyme (IlvB) (PDB:1BFD)
Ruegeria pomeroyi DSS-3 3561 4.50147E-6 SPO3562 K00375 nan DNA-binding transcriptional regulator, MocR family, contains an aminotransferase domain (ARO8) (PDB:2R2N)
Ruegeria pomeroyi DSS-3 3562 SPO3563 K03892 nan DNA-binding transcriptional regulator, ArsR family (ArsR) (PDB:3F6V)
Ruegeria pomeroyi DSS-3 3563 SPO3564 K07089 nan Uncharacterized membrane protein YraQ, UPF0718 family (YraQ)
Ruegeria pomeroyi DSS-3 3564 3.81374E-6 4.22445E-6 SPO3565 nan
Ruegeria pomeroyi DSS-3 3565 0.005374716 0.011132314 0.007082563 0.005785535 SPO3566 K09987 nan Uncharacterized conserved protein, DUF1013 family
Ruegeria pomeroyi DSS-3 3566 3.28457E-5 1.98315E-5 1.05106E-5 2.10212E-5 SPO3567 K01166 nan Ribonuclease I (RnaI) (PDB:1BK7)
Ruegeria pomeroyi DSS-3 3567 7.18821E-5 1.44414E-4 1.15011E-5 SPO3568 nan
Ruegeria pomeroyi DSS-3 3568 2.49627E-5 6.41116E-5 5.68594E-5 4.53026E-5 SPO3569 K06187 nan Recombinational DNA repair protein RecR (RecR) (PDB:2JGR) (PUBMED:26337406)
Ruegeria pomeroyi DSS-3 3569 2.40868E-4 5.11042E-4 0.001029309 0.001292658 SPO3570 K09747 nan DNA-binding nucleoid-associated protein YbaB/EfbC (YbaB) (PDB:1J8B) (PUBMED:19594923;22544270)
Ruegeria pomeroyi DSS-3 3570 SPO3571 K07506 nan Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH domain (GlxA)
Ruegeria pomeroyi DSS-3 3571 SPO3572 K08281 nan Nicotinamidase-related amidase (PncA) (PDB:1ILW)
Ruegeria pomeroyi DSS-3 3572 3.051E-5 2.96363E-4 2.22723E-4 2.70521E-4 SPO3573 K19784 nan NAD(P)H-dependent FMN reductase (SsuE) (PDB:6DQI)
Ruegeria pomeroyi DSS-3 3573 6.10199E-6 1.10388E-5 SPO3574 nan dTDP-4-dehydrorhamnose reductase (RfbD) (PDB:1KBZ)
Ruegeria pomeroyi DSS-3 3574 SPO3575 K21745 nan DNA-binding transcriptional regulator, MerR family (SoxR) (PDB:2VZ4)
Ruegeria pomeroyi DSS-3 3575 0.005968904 0.030199725 0.03401513 0.008192125 SPO3576 K03286 nan Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins (OmpA) (PDB:1OAP)
Ruegeria pomeroyi DSS-3 3576 SPO3577 nan Predicted DNA-binding transcriptional regulator YobV, contains HTH and WYL domains (YobV)
Ruegeria pomeroyi DSS-3 3577 7.76225E-6 1.42308E-5 1.26137E-5 SPO3578 K10778 nan DNA repair enzyme Ada (O6-methylguanine-DNA--protein-cysteine methyltransferase) (AdaB) (PDB:6RLA) (PUBMED:29061663)!!!AraC-type DNA-binding domain and AraC-containing proteins (AraC) (PDB:1BL0)
Ruegeria pomeroyi DSS-3 3578 SPO3579 nan DNA-binding transcriptional regulator, MarR family (MarR) (PDB:1JGS)
Ruegeria pomeroyi DSS-3 3579 1.0265E-5 SPO3580 nan Nicotinamidase-related amidase (PncA) (PDB:1ILW)
Ruegeria pomeroyi DSS-3 3580 4.36264E-5 1.38314E-4 3.84938E-5 4.10601E-5 SPO3581 K10773 nan Endonuclease III (Nth) (PDB:4UOB)
Ruegeria pomeroyi DSS-3 3581 6.37081E-4 9.8969E-4 9.35948E-4 8.13164E-4 SPO3582 K00856 nan Sugar or nucleoside kinase, ribokinase family (RbsK) (PDB:2QCV)
Ruegeria pomeroyi DSS-3 3582 1.29983E-5 9.53437E-6 1.29983E-5 2.92462E-5 SPO3583 K15973 nan DNA-binding transcriptional regulator, MarR family (MarR) (PDB:1JGS)
Ruegeria pomeroyi DSS-3 3583 SPO3584 K15269 nan Permease of the drug/metabolite transporter (DMT) superfamily (RhaT) (PDB:5I20)
Ruegeria pomeroyi DSS-3 3584 8.52763E-6 2.16875E-4 5.68508E-5 3.06994E-5 SPO3585 K08311 nan 8-oxo-dGTP pyrophosphatase MutT and related house-cleaning NTP pyrophosphohydrolases, NUDIX family (MutT) (PDB:4V14)
Ruegeria pomeroyi DSS-3 3585 6.59015E-5 8.79958E-4 1.05768E-4 6.56302E-5 SPO3586 K00219 nan NADPH-dependent glutamate synthase beta chain or related oxidoreductase (GltD) (PDB:1H7X)!!!2,4-dienoyl-CoA reductase or related NADH-dependent reductase, Old Yellow Enzyme (OYE) family (FadH) (PDB:1BWK)
Ruegeria pomeroyi DSS-3 3586 3.88892E-4 1.28396E-4 2.75028E-4 3.85389E-4 SPO3587 nan
Ruegeria pomeroyi DSS-3 3587 SPO3588 nan Heme-degrading monooxygenase HmoA and related ABM domain proteins (HmoA) (PDB:1IUJ) (PUBMED:21873409)
Ruegeria pomeroyi DSS-3 3588 SPO3589 nan
Ruegeria pomeroyi DSS-3 3589 SPO3590 nan
Ruegeria pomeroyi DSS-3 3590 SPO3591 nan Predicted permease, AEC (auxin efflux carrier) family (YfdV)
Ruegeria pomeroyi DSS-3 3591 4.56129E-6 2.4408E-5 1.82451E-5 3.10168E-5 SPO3592 nan DNA-binding transcriptional regulator, LysR family (LysR) (PDB:2FYI)
Ruegeria pomeroyi DSS-3 3592 1.87537E-4 5.7257E-4 4.02598E-4 1.7709E-4 SPO3593 nan Arylsulfatase A or related enzyme, AlkP superfamily (AslA) (PDB:1E1Z)
Ruegeria pomeroyi DSS-3 3593 0.002464383 0.007290858 0.004514445 0.003317123 SPO3594 K01889 nan Phenylalanyl-tRNA synthetase alpha subunit (PheS) (PDB:3L4G)
Ruegeria pomeroyi DSS-3 3594 SPO3595 nan Cupin domain protein related to quercetin dioxygenase (QdoI) (PDB:2H0V)!!!AraC-type DNA-binding domain and AraC-containing proteins (AraC) (PDB:1BL0)
Ruegeria pomeroyi DSS-3 3595 8.92417E-5 1.98315E-5 3.20354E-5 6.40709E-5 SPO3596 K07006 nan Predicted flavin-nucleotide-binding protein, pyridoxine 5'-phosphate oxidase superfamily (PDB:5ESC)
Ruegeria pomeroyi DSS-3 3596 1.1008E-5 3.05779E-6 4.89246E-6 SPO3597 K17839 nan Monoamine oxidase (YobN) (PDB:1B37)
Ruegeria pomeroyi DSS-3 3597 0.021960348 0.006103067 0.01722576 0.012650782 SPO3598 K02887 nan Ribosomal protein L20 (RplT) (PDB:1VS6) (PUBMED:30270044)
Ruegeria pomeroyi DSS-3 3598 8.32088E-5 1.40486E-4 2.49627E-5 1.69191E-4 SPO3599 K02916 nan Ribosomal protein L35 (RpmI) (PDB:1VS6) (PUBMED:28373563)
Ruegeria pomeroyi DSS-3 3599 0.001572182 0.018510647 0.025110377 0.008501807 SPO3600 K00873 Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate Pyruvate kinase (PykF) (PDB:6QXL)
Ruegeria pomeroyi DSS-3 3600 1.08715E-4 1.98315E-5 2.25649E-4 1.47195E-4 SPO3601 K01458 Histidine degradation, histidine => N-formiminoglutamate => glutamate Predicted N-formylglutamate amidohydrolase (HutG2) (PDB:2ODF)
Ruegeria pomeroyi DSS-3 3601 5.83503E-4 2.70776E-4 1.95381E-4 5.96704E-4 SPO3602 K09948 nan Uncharacterized conserved protein, DUF1244 family (PDB:2O35)
Ruegeria pomeroyi DSS-3 3602 SPO3603 K19222 Menaquinone biosynthesis, chorismate (+ polyprenyl-PP) => menaquinol Acyl-CoA thioesterase PaaI, contains HGG motif (PaaI) (PDB:1PSU)
Ruegeria pomeroyi DSS-3 3603 0.003195223 0.005479839 0.003625989 0.003889697 SPO3604 K00824 nan Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase (IlvE) (PDB:1A3G)
Ruegeria pomeroyi DSS-3 3604 3.81374E-6 1.75894E-5 SPO3605 nan
Ruegeria pomeroyi DSS-3 3605 6.3301E-5 1.30684E-4 1.53975E-4 1.67092E-4 SPO3606 K19802 nan L-alanine-DL-glutamate epimerase or related enzyme of enolase superfamily (RspA) (PDB:1BKH)
Ruegeria pomeroyi DSS-3 3606 1.64919E-6 4.39343E-5 1.04449E-5 4.12297E-6 SPO3607 nan Uncharacterized conserved protein, NAD-dependent epimerase/dehydratase family (PDB:2G0T)
Ruegeria pomeroyi DSS-3 3607 0.05305154 0.001900141 0.013512661 0.025191292 SPO3608 K08691 Ethylmalonyl pathway Citrate lyase beta subunit (CitE) (PDB:4ROQ)
Ruegeria pomeroyi DSS-3 3608 SPO3609 nan NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family (FabG) (PDB:6L1H)
Ruegeria pomeroyi DSS-3 3609 2.61514E-6 1.5255E-5 1.04606E-5 SPO3610 nan
Ruegeria pomeroyi DSS-3 3610 5.83325E-5 2.07722E-4 2.18154E-4 1.30892E-4 SPO3611 nan
Ruegeria pomeroyi DSS-3 3611 SPO3612 K03719 nan DNA-binding transcriptional regulator, Lrp family (Lrp) (PDB:1I1G)
Ruegeria pomeroyi DSS-3 3612 SPO3613 K11249 nan Threonine/homoserine/homoserine lactone efflux protein (RhtB)
Ruegeria pomeroyi DSS-3 3613 SPO3614 nan
Ruegeria pomeroyi DSS-3 3614 4.97445E-6 2.16112E-5 4.84179E-5 9.28563E-6 SPO3615 K13652 nan AraC-type DNA-binding domain and AraC-containing proteins (AraC) (PDB:1BL0)!!!DNA gyrase inhibitor GyrI/SbmC (SbmC) (PDB:1JYH)
Ruegeria pomeroyi DSS-3 3615 9.58489E-4 0.003009551 0.003141761 0.001435874 SPO3616 K01962 3-Hydroxypropionate bi-cycle Acetyl-CoA carboxylase alpha subunit (AccA) (PDB:2F9I)
Ruegeria pomeroyi DSS-3 3616 0.001903582 0.005922428 0.003581312 0.004026836 SPO3617 K08305 nan Membrane-bound lytic murein transglycosylase B (MltB) (PDB:1D0K)
Ruegeria pomeroyi DSS-3 3617 SPO3618 K15554 nan ABC-type nitrate/sulfonate/bicarbonate transport system, permease component (TauC)
Ruegeria pomeroyi DSS-3 3618 9.82422E-6 SPO3619 nan ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component (TauB)
Ruegeria pomeroyi DSS-3 3619 6.90536E-4 0.002343434 0.001140602 4.05656E-4 SPO3620 nan ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component (TauA) (PDB:2X26)
Ruegeria pomeroyi DSS-3 3620 4.34235E-5 2.29889E-5 1.02173E-5 SPO3621 nan DNA-binding transcriptional regulator, GntR family (GntR) (PDB:3FMS)
Ruegeria pomeroyi DSS-3 3621 2.23243E-6 SPO3622 nan UTP pyrophosphatase, metal-dependent hydrolase family (YgjP) (PDB:4JIU) (PUBMED:27941785)
Ruegeria pomeroyi DSS-3 3622 5.92401E-4 4.37309E-4 0.001325487 5.57654E-4 SPO3623 nan Uncharacterized conserved protein (PUBMED:19495416)
Ruegeria pomeroyi DSS-3 3623 SPO_tRNA-Ala-3 nan
Ruegeria pomeroyi DSS-3 3624 1.37295E-4 1.5077E-4 1.29219E-4 2.18056E-4 SPO3625 K03704 nan Cold shock protein, CspA family (CspC) (PDB:1C9O)
Ruegeria pomeroyi DSS-3 3625 0.001042959 0.00283056 0.001187479 9.24933E-4 SPO3626 K01919 Glutathione biosynthesis, glutamate => glutathione Gamma-glutamylcysteine synthetase (Gsh2) (PDB:2GWD)
Ruegeria pomeroyi DSS-3 3626 1.25527E-5 1.25397E-5 7.84544E-6 SPO3627 nan
Ruegeria pomeroyi DSS-3 3627 1.14331E-4 1.20559E-4 1.36155E-4 7.16603E-5 SPO3628 K06976 nan Predicted acetyltransferase, GNAT family
Ruegeria pomeroyi DSS-3 3628 2.85529E-4 3.33067E-4 5.52096E-4 4.28841E-4 SPO3629 K09761 nan 16S rRNA U1498 N3-methylase RsmE (RsmE) (PDB:1NXZ)
Ruegeria pomeroyi DSS-3 3629 SPO3630 K03179 Ubiquinone biosynthesis, prokaryotes, chorismate (+ polyprenyl-PP) => ubiquinol 4-hydroxybenzoate polyprenyltransferase (UbiA) (PDB:4OD4) (PUBMED:28830929)
Ruegeria pomeroyi DSS-3 3630 0.001631587 0.003542458 0.001017892 0.001406139 SPO3631 K03286 nan Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins (OmpA) (PDB:1OAP)
Ruegeria pomeroyi DSS-3 3631 4.18549E-4 2.05942E-4 0.001352508 3.75006E-4 SPO3632 nan
Ruegeria pomeroyi DSS-3 3632 7.65862E-5 3.43237E-5 6.10199E-5 1.34493E-4 SPO3633 K03635 Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor Molybdopterin synthase catalytic subunit MoaE (MoaE) (PDB:1FM0) (PUBMED:32239579)
Ruegeria pomeroyi DSS-3 3633 1.7628E-4 2.23841E-5 3.11879E-4 2.486E-4 SPO3634 K03636 nan Molybdopterin synthase sulfur carrier subunit MoaD (MoaD) (PDB:1FM0) (PUBMED:32239579)
Ruegeria pomeroyi DSS-3 3634 SPO3635 K08744 nan Phosphatidylglycerophosphate synthase (PgsA) (PDB:4MND)
Ruegeria pomeroyi DSS-3 3635 9.24783E-6 1.11241E-4 1.09077E-4 1.37532E-5 SPO3636 nan CubicO group peptidase, beta-lactamase class C family (AmpC) (PDB:1BLS)
Ruegeria pomeroyi DSS-3 3636 3.92271E-5 3.43237E-5 1.58671E-5 9.99041E-6 SPO3637 K03703 nan Excinuclease UvrABC, nuclease subunit (UvrC) (PDB:2NRT) (PUBMED:24513124)
Ruegeria pomeroyi DSS-3 3637 1.15561E-4 5.64027E-5 8.69358E-5 6.99727E-5 SPO3638 K03793 nan NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family (FabG) (PDB:6L1H)
Ruegeria pomeroyi DSS-3 3638 SPO3639 K07301 nan Ca2+/Na+ antiporter (ECM27) (PDB:3V5S)
Ruegeria pomeroyi DSS-3 3639 3.127E-5 1.14412E-4 7.03574E-5 7.16603E-5 SPO3640 K04773 nan Periplasmic serine protease, ClpP class (SppA) (PDB:3BEZ)
Ruegeria pomeroyi DSS-3 3640 SPO3641 nan ABC-type multidrug transport system, permease component (YadH)
Ruegeria pomeroyi DSS-3 3641 6.57593E-5 5.90128E-5 2.90289E-5 1.17301E-4 SPO3642 K01990 nan ABC-type multidrug transport system, ATPase component (CcmA) (PDB:5DO7)
Ruegeria pomeroyi DSS-3 3642 SPO3901 K09386 nan Carbon monoxide dehydrogenase subunit CoxG (CoxG) (PDB:2NS9)
Ruegeria pomeroyi DSS-3 3643 SPO3643 K15270 nan Permease of the drug/metabolite transporter (DMT) superfamily (RhaT) (PDB:5I20)
Ruegeria pomeroyi DSS-3 3644 SPO3644 nan 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase MenH and related esterases, alpha/beta hydrolase fold (MenH) (PDB:4MYS)
Ruegeria pomeroyi DSS-3 3645 9.40375E-6 2.44497E-5 1.5046E-5 SPO3645 nan DNA-binding transcriptional regulator, HxlR family (HxlR) (PDB:1YYV)
Ruegeria pomeroyi DSS-3 3646 3.81374E-6 1.77728E-6 SPO3646 K01692 beta-Oxidation Enoyl-CoA hydratase/carnithine racemase (CaiD) (PDB:1DCI)
Ruegeria pomeroyi DSS-3 3647 1.88592E-5 4.00697E-6 4.72736E-5 1.88592E-5 SPO3647 K01796 Bile acid biosynthesis, cholesterol => cholate/chenodeoxycholate Crotonobetainyl-CoA:carnitine CoA-transferase CaiB and related acyl-CoA transferases (CaiB) (PDB:1P5H)
Ruegeria pomeroyi DSS-3 3648 5.65942E-4 3.11456E-4 5.67272E-4 6.51352E-4 SPO3648 K01599 Heme biosynthesis, animals and fungi, glycine => heme Uroporphyrinogen-III decarboxylase HemE (HemE) (PDB:2DG5)
Ruegeria pomeroyi DSS-3 3649 5.93079E-4 6.19362E-4 0.001364626 7.03546E-4 SPO3649 K01749 Siroheme biosynthesis, glutamyl-tRNA => siroheme Porphobilinogen deaminase (HemC) (PDB:1AH5)
Ruegeria pomeroyi DSS-3 3650 3.02514E-5 5.52128E-5 3.41298E-5 3.07168E-5 SPO3650 nan Adenylate cyclase, class 3 (AcyC) (PDB:1AB8)!!!TolB amino-terminal domain (function unknown) (TolBN) (PDB:1C5K) (PUBMED:10673426;24821816)
Ruegeria pomeroyi DSS-3 3651 SPO3651 K02294 nan Fatty acid desaturase (DesA)
Ruegeria pomeroyi DSS-3 3652 1.3807E-4 8.26312E-5 1.21006E-4 1.04458E-4 SPO3652 nan
Ruegeria pomeroyi DSS-3 3653 2.27891E-4 1.94501E-4 3.70478E-4 5.61632E-4 SPO3653 K00228 Heme biosynthesis, animals and fungi, glycine => heme Coproporphyrinogen-III oxidase HemH, oxygen-dependent (HemF) (PDB:3E8J)
Ruegeria pomeroyi DSS-3 3654 2.99364E-4 2.63826E-4 1.43832E-4 1.55532E-4 SPO3654 K00076 nan NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family (FabG) (PDB:6L1H)
Ruegeria pomeroyi DSS-3 3655 8.55421E-5 1.38723E-5 1.56827E-4 1.09494E-4 SPO3655 K00564 nan 16S rRNA G1207 methylase RsmC (RsmC) (PDB:1DUS)
Ruegeria pomeroyi DSS-3 3656 3.81374E-6 6.156E-5 SPO3656 K06891 nan ATP-dependent Clp protease adapter protein ClpS (ClpS) (PDB:1LZW)
Ruegeria pomeroyi DSS-3 3657 2.26933E-5 4.53867E-6 1.66418E-5 SPO3657 nan FMN and 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB, HAD superfamily (riboflavin biosynthesis) (YigB) (PDB:4JB3) (PUBMED:24123841)
Ruegeria pomeroyi DSS-3 3658 1.5255E-5 4.60527E-6 SPO3658 K07258 nan D-alanyl-D-alanine carboxypeptidase (DacC) (PDB:1HD8)
Ruegeria pomeroyi DSS-3 3659 9.768E-4 7.04271E-4 1.98254E-4 0.001028173 SPO3659 K07160 nan 5-oxoprolinase subunit A (PxpA) (PDB:1V6T) (PUBMED:28830929)
Ruegeria pomeroyi DSS-3 3660 6.61661E-6 1.0752E-5 2.39852E-5 SPO3660 K23124 nan 5-oxoprolinase subunit C/Allophanate hydrolase subunit 2 (PxpC) (PDB:3MML) (PUBMED:28830929)
Ruegeria pomeroyi DSS-3 3661 6.39604E-5 8.08696E-6 2.12467E-4 SPO3661 nan 5-oxoprolinase subunit B/Allophanate hydrolase subunit 1 (PxpB) (PDB:2KWA) (PUBMED:28830929)
Ruegeria pomeroyi DSS-3 3662 SPO3662 nan
Ruegeria pomeroyi DSS-3 3663 1.2567E-6 SPO3663 K11690 nan TRAP-type C4-dicarboxylate transport system, large permease component (DctQ)
Ruegeria pomeroyi DSS-3 3664 SPO3664 K21394 nan TRAP-type C4-dicarboxylate transport system, small permease component YiaM (DctM)
Ruegeria pomeroyi DSS-3 3665 0.002292483 0.002825475 2.79109E-4 0.002723859 SPO3665 K21395 nan TRAP-type C4-dicarboxylate transport system, periplasmic component (DctP) (PDB:2CEX)
Ruegeria pomeroyi DSS-3 3666 2.38065E-4 6.73762E-5 2.65241E-5 6.56145E-4 SPO3666 nan Glycine/D-amino acid oxidase (deaminating) (DadA) (PDB:3AWI)
Ruegeria pomeroyi DSS-3 3667 9.34773E-5 5.84233E-6 3.35934E-4 SPO3667 nan L-alanine-DL-glutamate epimerase or related enzyme of enolase superfamily (RspA) (PDB:1BKH)
Ruegeria pomeroyi DSS-3 3668 1.80059E-6 SPO3668 nan DNA-binding transcriptional regulator, LysR family (LysR) (PDB:2FYI)
Ruegeria pomeroyi DSS-3 3669 SPO_tRNA-Ser-5 nan
Ruegeria pomeroyi DSS-3 3670 SPO3902 nan Membrane carboxypeptidase/penicillin-binding protein (MrcA) (PDB:3D0F)
Ruegeria pomeroyi DSS-3 3671 7.79576E-5 3.24994E-4 1.21157E-4 3.64133E-5 SPO3671 nan Multicopper oxidase with three cupredoxin domains (includes cell division protein FtsP and spore coat protein CotA) (SufI) (PDB:2YXV)
Ruegeria pomeroyi DSS-3 3672 3.47582E-6 2.87404E-5 5.56131E-5 SPO3672 nan
Ruegeria pomeroyi DSS-3 3673 1.01512E-5 1.58906E-4 1.69187E-5 7.52879E-6 SPO3673 K01406 nan Ca2+-binding protein, RTX toxin-related (PDB:1AF0) (PUBMED:15135544)
Ruegeria pomeroyi DSS-3 3674 SPO3673a nan
Ruegeria pomeroyi DSS-3 3675 SPO3674 K07492 nan Transposase
Ruegeria pomeroyi DSS-3 3676 SPO3675 K08640 nan Uncharacterized conserved protein YcbK, DUF882 family (YcbK)
Ruegeria pomeroyi DSS-3 3677 SPO3676 K01438 Ornithine biosynthesis, glutamate => ornithine Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase or related deacylase (ArgE) (PDB:1CG2)
Ruegeria pomeroyi DSS-3 3678 SPO3677 nan DNA-binding transcriptional regulator, LysR family (LysR) (PDB:2FYI)
Ruegeria pomeroyi DSS-3 3679 1.48829E-6 SPO3678 nan Phenylpropionate dioxygenase or related ring-hydroxylating dioxygenase, large terminal subunit (HcaE) (PDB:4QDC)
Ruegeria pomeroyi DSS-3 3680 5.02597E-5 3.30872E-5 2.94203E-5 4.98511E-5 SPO3679 nan Uncharacterized conserved protein, Ntn-hydrolase superfamily (PDB:2IMH)
Ruegeria pomeroyi DSS-3 3681 6.36729E-5 1.09609E-4 4.97445E-5 6.63259E-5 SPO3680 K09022 nan Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family (RidA) (PDB:1J7H) (PUBMED:22094463;32205462)
Ruegeria pomeroyi DSS-3 3682 SPO3681 nan Phenylpropionate dioxygenase or related ring-hydroxylating dioxygenase, large terminal subunit (HcaE) (PDB:4QDC)
Ruegeria pomeroyi DSS-3 3683 8.41902E-6 2.63364E-5 1.8565E-5 SPO3682 K07222 nan Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD (CzcO) (PDB:4USQ)
Ruegeria pomeroyi DSS-3 3684 SPO_tRNA-Arg-5 nan
Ruegeria pomeroyi DSS-3 3685 4.42081E-4 0.003032751 6.79092E-4 6.10378E-4 SPO3684 K06145 nan DNA-binding transcriptional regulator, LacI/PurR family (PurR) (PDB:1BDH)
Ruegeria pomeroyi DSS-3 3686 3.05855E-5 5.75981E-4 1.31404E-5 4.93898E-5 SPO3685 K09927 nan DNA glycosylase YcaQ, repair of DNA interstrand crosslinks (YcaQ) (PUBMED:32409837)
Ruegeria pomeroyi DSS-3 3687 7.83011E-5 1.48949E-4 1.3515E-4 2.43126E-5 SPO3686 K02510 nan 2-keto-3-deoxy-L-rhamnonate aldolase RhmA (HpcH) (PDB:1DXE)
Ruegeria pomeroyi DSS-3 3688 2.9274E-6 3.06994E-5 1.17096E-6 SPO3687 K01593 Catecholamine biosynthesis, tyrosine => dopamine => noradrenaline => adrenaline Glutamate or tyrosine decarboxylase or a related PLP-dependent protein (GadA) (PDB:1XEY)
Ruegeria pomeroyi DSS-3 3689 1.09499E-5 1.93293E-5 6.73839E-6 SPO3688 K00446 Catechol meta-cleavage, catechol => acetyl-CoA / 4-methylcatechol => propanoyl-CoA Catechol 2,3-dioxygenase or related enzyme, vicinal oxygen chelate (VOC) family (GloA) (PDB:3R4Q) (PUBMED:11830595)!!!Catechol-2,3-dioxygenase (CatE)
Ruegeria pomeroyi DSS-3 3690 6.94949E-5 9.22119E-5 8.70099E-5 6.44099E-5 SPO3689 K23775 nan DNA-binding transcriptional regulator, MarR family (MarR) (PDB:1JGS)
Ruegeria pomeroyi DSS-3 3691 1.59645E-6 3.60343E-5 6.3858E-6 SPO3690 K00450 nan Gentisate 1,2-dioxygenase (PDB:3BU7)
Ruegeria pomeroyi DSS-3 3692 4.21353E-4 0.001231389 7.61433E-4 5.7285E-4 SPO3691 K16165 nan 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) (YcgM) (PDB:1GTT)
Ruegeria pomeroyi DSS-3 3693 1.39033E-5 8.75503E-5 7.09065E-5 1.5757E-5 SPO3692 K22270 nan 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases (UbiH) (PDB:1BF3)
Ruegeria pomeroyi DSS-3 3694 4.92161E-4 0.004226114 0.003028986 3.06099E-4 SPO3693 K21395 nan TRAP-type C4-dicarboxylate transport system, periplasmic component (DctP) (PDB:2CEX)
Ruegeria pomeroyi DSS-3 3695 SPO3694 nan TRAP-type C4-dicarboxylate transport system, small permease component YiaM (DctM)
Ruegeria pomeroyi DSS-3 3696 SPO3695 K11690 nan TRAP-type C4-dicarboxylate transport system, large permease component (DctQ)
Ruegeria pomeroyi DSS-3 3697 1.69285E-5 7.09034E-6 9.66864E-7 SPO3696 K12508 nan O-succinylbenzoic acid-CoA ligase MenE or related acyl-CoA synthetase (AMP-forming) (MenE/FadK) (PDB:5EY9) (PUBMED:25151136;27455459)
Ruegeria pomeroyi DSS-3 3698 3.41105E-6 2.69734E-5 SPO3697 K04105 nan Acyl-coenzyme A synthetase/AMP-(fatty) acid ligase (Acs) (PDB:4B2O) (PUBMED:14638756)
Ruegeria pomeroyi DSS-3 3699 2.02649E-6 4.24238E-5 1.82384E-5 5.06623E-6 SPO3698 nan 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase MenH and related esterases, alpha/beta hydrolase fold (MenH) (PDB:4MYS)
Ruegeria pomeroyi DSS-3 3700 SPO3699 K09763 nan Predicted metal-dependent hydrolase (YpuF) (PDB:2CWY)
Ruegeria pomeroyi DSS-3 3701 6.45509E-6 1.11456E-4 1.42343E-5 3.21099E-5 SPO3700 K15513 nan Enoyl-CoA hydratase/carnithine racemase (CaiD) (PDB:1DCI)
Ruegeria pomeroyi DSS-3 3702 1.029E-4 3.48705E-4 2.28161E-4 2.23613E-4 SPO3701 K15512 nan 1,2-phenylacetyl-CoA epoxidase, catalytic subunit (YdbO) (PDB:1OTK)
Ruegeria pomeroyi DSS-3 3703 SPO3702 nan
Ruegeria pomeroyi DSS-3 3704 2.14062E-5 3.42833E-5 2.46048E-5 6.88935E-6 SPO3703 K15511 nan Flavoprotein (flavin reductase) subunit CysJ of sulfite and N-hydroxylaminopurine reductases (CysJ) (PDB:1YKG) (PUBMED:20118259)!!!Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, delta subunit (PorD) (PDB:5C4I)
Ruegeria pomeroyi DSS-3 3705 7.20235E-6 1.36442E-5 7.20235E-6 7.20235E-6 SPO3704 K15546 nan Shikimate kinase (AroK) (PDB:1E6C)!!!Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains (aMBF1) (PDB:2MEZ) (PUBMED:24825021)
Ruegeria pomeroyi DSS-3 3706 1.04639E-4 4.80832E-4 0.001007531 1.17514E-4 SPO3705 K01999 nan ABC-type branched-chain amino acid transport system, periplasmic component (LivK) (PDB:1USG)
Ruegeria pomeroyi DSS-3 3707 1.36442E-5 SPO3706 K01995 nan ABC-type branched-chain amino acid transport system, ATPase component LivG (LivG) (PDB:1G9X) (PUBMED:29514851)
Ruegeria pomeroyi DSS-3 3708 SPO3707 nan ABC-type branched-chain amino acid transport system, ATPase component LivF (LivF) (PDB:1JI0) (PUBMED:26527648;32250026)
Ruegeria pomeroyi DSS-3 3709 SPO3708 K01997 nan Branched-chain amino acid ABC-type transport system, permease component (LivH)
Ruegeria pomeroyi DSS-3 3710 SPO3709 K01998 nan ABC-type branched-chain amino acid transport system, permease component (LivM)
Ruegeria pomeroyi DSS-3 3711 5.76566E-6 5.37094E-6 1.44141E-6 SPO3710 nan
Ruegeria pomeroyi DSS-3 3712 SPO3711 nan Predicted arabinose efflux permease AraJ, MFS family (AraJ) (PDB:4LDS)
Ruegeria pomeroyi DSS-3 3713 0.023234306 0.024713514 0.03606813 0.028501846 SPO3712 K00133 Threonine biosynthesis, aspartate => homoserine => threonine Aspartate-semialdehyde dehydrogenase (Asd) (PDB:1BRM)
Ruegeria pomeroyi DSS-3 3714 8.17325E-4 0.002709308 7.02499E-4 9.45698E-4 SPO3713 nan Uncharacterized protein, contains DUF4139 domain
Ruegeria pomeroyi DSS-3 3715 SPO3714 nan
Ruegeria pomeroyi DSS-3 3716 7.99615E-4 0.001464592 8.55126E-4 7.47494E-4 SPO3715 K01673 nan Carbonic anhydrase (CynT) (PDB:1EKJ) (PUBMED:22081392)
Ruegeria pomeroyi DSS-3 3717 SPO3716 nan
Ruegeria pomeroyi DSS-3 3718 0.001149208 0.001052827 0.001203647 0.001066053 SPO3717 K01255 nan Leucyl aminopeptidase (PepB) (PDB:3H8E) (PUBMED:19553197;23825549)
Ruegeria pomeroyi DSS-3 3719 2.48123E-4 7.50431E-5 2.12467E-4 3.35977E-4 SPO3718 K20742 nan Cell wall-associated hydrolase, NlpC_P60 family (NlpC) (PDB:2EVR)
Ruegeria pomeroyi DSS-3 3720 0.002800039 0.002961061 0.003592223 0.001795144 SPO3719 K01011 nan 3-mercaptopyruvate sulfurtransferase SseA, contains two rhodanese domains (SseA) (PDB:1BOH)
Ruegeria pomeroyi DSS-3 3721 0.005923884 0.01851519 0.004756763 0.006135286 SPO3720 K00813 nan Aspartate/aromatic aminotransferase (TyrB) (PDB:1AAM)
Ruegeria pomeroyi DSS-3 3722 SPO3721 nan
Ruegeria pomeroyi DSS-3 3723 3.1929E-6 SPO3722 nan DNA-binding transcriptional regulator, IscR family (IscR) (PDB:1XD7)
Ruegeria pomeroyi DSS-3 3724 SPO3723 K03320 nan Ammonia channel protein AmtB (AmtB) (PDB:1U77)
Ruegeria pomeroyi DSS-3 3725 SPO3724 K04751 nan Nitrogen regulatory protein PII (GlnK) (PDB:2GW8) (PUBMED:24610711)
Ruegeria pomeroyi DSS-3 3726 1.89913E-4 6.33834E-4 5.91691E-4 2.56934E-4 SPO3725 K05366 nan Penicillin-binding protein 1B/1F, peptidoglycan  transglycosylase/transpeptidase (MrcB) (PDB:3FWL)
Ruegeria pomeroyi DSS-3 3727 8.33283E-4 0.001757827 0.001489851 9.14392E-4 SPO3726 K07323 nan Periplasmic subunit MlaC of the ABC-type intermembrane phospholipid transporter Mla (MlaC) (PDB:2QGU) (PUBMED:19383799)
Ruegeria pomeroyi DSS-3 3728 2.26433E-4 3.19502E-4 9.08467E-5 2.19261E-4 SPO3727 K04754 nan Lipoprotein subunit MlaA of the ABC-type intermembrane phospholipid transporter Mla (MlaA) (PDB:5NUQ)
Ruegeria pomeroyi DSS-3 3729 0.00164135 0.006424142 0.002358519 0.002487644 SPO3728 K12536 nan ABC-type protease/lipase transport system, ATPase and permease components (ArpD) (PDB:5L22)
Ruegeria pomeroyi DSS-3 3730 0.00125119 0.002379775 0.001353288 9.14452E-4 SPO3729 K12537 nan Multidrug efflux pump subunit AcrA (membrane-fusion protein) (AcrA) (PDB:1T5E)!!!Multidrug resistance efflux pump EmrA (EmrA) (PDB:4TKO)
Ruegeria pomeroyi DSS-3 3731 0.001101971 0.004717062 0.007192316 9.32159E-4 SPO3730 K09022 nan Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family (RidA) (PDB:1J7H) (PUBMED:22094463;32205462)
Ruegeria pomeroyi DSS-3 3732 4.90338E-5 9.24739E-5 1.53276E-4 4.4312E-5 SPO3731 K01126 nan Glycerophosphoryl diester phosphodiesterase (UgpQ) (PDB:1O1Z)
Ruegeria pomeroyi DSS-3 3733 5.56131E-6 2.30807E-5 2.22452E-5 SPO3732 K09919 nan Predicted N-acyltransferase
Ruegeria pomeroyi DSS-3 3734 2.26466E-5 3.08763E-5 4.52931E-5 5.66164E-6 SPO3733 K01724 nan Pterin-4a-carbinolamine dehydratase (PhhB) (PDB:1DCH)
Ruegeria pomeroyi DSS-3 3735 SPO3734 nan DNA-binding transcriptional regulator, MerR family (SoxR) (PDB:2VZ4)
Ruegeria pomeroyi DSS-3 3736 SPO3735 nan Predicted arabinose efflux permease AraJ, MFS family (AraJ) (PDB:4LDS)
Ruegeria pomeroyi DSS-3 3737 0.001231389 9.28172E-4 0.001553165 0.001295062 SPO3736 nan Peroxiredoxin (AHP1) (PDB:1H4O)
Ruegeria pomeroyi DSS-3 3738 3.07976E-4 0.003611013 6.59105E-4 5.85972E-4 SPO3737 K00529 Trans-cinnamate degradation, trans-cinnamate => acetyl-CoA NAD(P)H-nitrite reductase, large subunit (NirB)
Ruegeria pomeroyi DSS-3 3739 5.1857E-5 2.95257E-6 SPO3738 K08316 nan 16S rRNA G966 N2-methylase RsmD (RsmD) (PDB:2IFT)
Ruegeria pomeroyi DSS-3 3740 3.29343E-6 5.5638E-5 1.23503E-5 7.41021E-6 SPO3739 nan N-methylhydantoinase A/oxoprolinase/acetone carboxylase, beta subunit (HyuA)
Ruegeria pomeroyi DSS-3 3741 8.30229E-4 8.12739E-4 6.95626E-4 7.04241E-4 SPO3740 K07304 nan Peptide methionine sulfoxide reductase MsrA (MsrA) (PDB:1FF3)
Ruegeria pomeroyi DSS-3 3742 2.39575E-5 8.35441E-5 8.10868E-5 SPO3741 K07305 nan Peptide methionine sulfoxide reductase MsrB (MsrB) (PDB:1L1D)
Ruegeria pomeroyi DSS-3 3743 SPO3742 K00432 nan Thioredoxin/glutathione peroxidase BtuE, reduces lipid peroxides (BtuE) (PDB:2P5Q) (PUBMED:22931285)
Ruegeria pomeroyi DSS-3 3744 SPO3743 K15269 nan Permease of the drug/metabolite transporter (DMT) superfamily (RhaT) (PDB:5I20)
Ruegeria pomeroyi DSS-3 3745 0.007607033 0.008009452 0.03116037 0.009915395 SPO3744 K03530 nan Bacterial nucleoid DNA-binding protein IHF-alpha (HimA) (PDB:1B8Z)
Ruegeria pomeroyi DSS-3 3746 3.99761E-4 5.07109E-4 1.63137E-4 2.05989E-4 SPO3745 K01241 nan Nucleoside phosphorylase/nucleosidase, includes 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase MtnN and futalosine hydrolase MqnB (MtnN) (PDB:1T8R) (PUBMED:18801996)
Ruegeria pomeroyi DSS-3 3747 0.001393439 0.001869255 7.85062E-4 7.8749E-4 SPO3746 K01486 nan Adenine deaminase (AdeC) (PDB:3NQB)
Ruegeria pomeroyi DSS-3 3748 9.66863E-6 1.54698E-5 2.51385E-5 SPO3747 nan Lactoylglutathione lyase-related enzyme, vicinal oxygen chelate (VOC) family (VOC) (PDB:3OXH) (PUBMED:31710815)
Ruegeria pomeroyi DSS-3 3749 1.89372E-6 SPO3748 K03566 nan DNA-binding transcriptional regulator, LysR family (LysR) (PDB:2FYI)
Ruegeria pomeroyi DSS-3 3750 5.46991E-6 1.36442E-5 8.75185E-6 6.56389E-6 SPO3749 nan 5-methylthioribulose/5-deoxyribulose/Fuculose 1-phosphate aldolase (methionine salvage, sugar degradation) (AraD) (PDB:1FUA) (PUBMED:31950558)
Ruegeria pomeroyi DSS-3 3751 SPO3750 K00227 Cholesterol biosynthesis, squalene 2,3-epoxide => cholesterol Sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily (ERG3) (PDB:4ZR0)
Ruegeria pomeroyi DSS-3 3752 2.98467E-5 5.04972E-5 5.41219E-5 7.79993E-5 SPO3751 K06920 nan 7-cyano-7-deazaguanine synthase (queuosine biosynthesis) (QueC) (PDB:2PG3) (PUBMED:14660578;17384645)
Ruegeria pomeroyi DSS-3 3753 SPO3903 K01737 Tetrahydrobiopterin biosynthesis, GTP => BH4 6-pyruvoyl-tetrahydropterin synthase (QueD) (PDB:1B66) (PUBMED:14660578;17384645)
Ruegeria pomeroyi DSS-3 3754 SPO3752 K10026 nan Organic radical activating enzyme NrdG/QueE (QueE) (PUBMED:14660578;17384645)
Ruegeria pomeroyi DSS-3 3755 4.42886E-5 1.65413E-4 1.1456E-4 2.1849E-4 SPO3753 K09457 nan NADPH-dependent 7-cyano-7-deazaguanine reductase QueF, C-terminal domain, T-fold superfamily (QueFC) (PDB:3BP1) (PUBMED:14660578;17384645)
Ruegeria pomeroyi DSS-3 3756 7.09744E-5 1.10291E-4 6.4381E-5 3.72325E-5 SPO3754 K24419 nan Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG (UbiE) (PDB:4OBW)
Ruegeria pomeroyi DSS-3 3757 3.88112E-5 2.50143E-5 8.08567E-5 1.22903E-5 SPO3755 nan Nucleoside-diphosphate-sugar epimerase (WcaG) (PDB:2X4G)
Ruegeria pomeroyi DSS-3 3758 8.8519E-5 1.36442E-5 7.0454E-5 4.63671E-5 SPO3756 K03286 nan Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins (OmpA) (PDB:1OAP)
Ruegeria pomeroyi DSS-3 3759 3.4974E-4 7.6976E-4 6.63832E-4 4.48014E-4 SPO3757 nan Alkylhydroperoxidase family enzyme, contains CxxC motif (YciW) (PDB:1GU9)
Ruegeria pomeroyi DSS-3 3760 1.13467E-4 5.45768E-5 1.61122E-4 1.85329E-4 SPO3758 K22476 nan Predicted acetyltransferase, GNAT family
Ruegeria pomeroyi DSS-3 3761 1.46448E-4 1.84196E-4 1.87636E-4 1.47973E-4 SPO3759 K00953 Riboflavin biosynthesis, fungi, GTP => riboflavin/FMN/FAD ADP-ribose pyrophosphatase domain of DNA damage- and competence-inducible protein CinA (CinA) (PDB:4CT9) (PUBMED:25313401)
Ruegeria pomeroyi DSS-3 3762 3.41105E-6 SPO3760 K06206 nan DNA-binding protein, stimulates sugar fermentation (SfsA) (PDB:4DA2)
Ruegeria pomeroyi DSS-3 3763 3.76667E-4 5.00287E-4 0.001187506 9.42519E-4 SPO3761 K01265 nan Methionine aminopeptidase (Map) (PDB:3J2I)
Ruegeria pomeroyi DSS-3 3764 2.39618E-4 1.42127E-4 0.001122536 3.98068E-4 SPO3762 K01091 nan Beta-phosphoglucomutase, HAD superfamily (YcjU) (PDB:3E58) (PUBMED:29684280)
Ruegeria pomeroyi DSS-3 3765 7.93611E-6 3.90224E-6 1.4285E-5 2.30147E-5 SPO3763 K18979 nan Epoxyqueuosine reductase QueG (queuosine biosynthesis) (QueG) (PDB:5D08) (PUBMED:2150253)
Ruegeria pomeroyi DSS-3 3766 9.93988E-5 2.27671E-4 1.87201E-4 1.47442E-4 SPO3764 K00799 nan Glutathione S-transferase (GstA) (PDB:1A0F)
Ruegeria pomeroyi DSS-3 3767 SPO3765 nan Protein N-acetyltransferase, RimJ/RimL family (RimL) (PDB:1S7F)
Ruegeria pomeroyi DSS-3 3768 1.47507E-5 6.8221E-6 2.0424E-5 9.07734E-6 SPO3766 K03814 nan Penicillin-binding protein 1B/1F, peptidoglycan  transglycosylase/transpeptidase (MrcB) (PDB:3FWL)
Ruegeria pomeroyi DSS-3 3769 SPO3767 nan Ca2+-binding protein, RTX toxin-related (PDB:1AF0) (PUBMED:15135544)
Ruegeria pomeroyi DSS-3 3770 0.002501674 0.03600021 0.003663375 0.004512481 SPO3768 K00265 nan Glutamate synthase domain 1 (GltB1) (PDB:1EA0)!!!Glutamate synthase domain 2 (GltB2) (PDB:1EA0)!!!Glutamate synthase domain 3 (GltB3) (PDB:1EA0)
Ruegeria pomeroyi DSS-3 3771 9.84735E-5 1.10291E-4 7.19613E-5 1.02261E-4 SPO3769 nan Uncharacterized conserved protein (PDB:1X6M)
Ruegeria pomeroyi DSS-3 3772 0.001177223 0.004849374 0.0018778 0.001892384 SPO3770 K00266 nan NADPH-dependent glutamate synthase beta chain or related oxidoreductase (GltD) (PDB:1H7X)
Ruegeria pomeroyi DSS-3 3773 SPO3771 K06153 nan Undecaprenyl pyrophosphate phosphatase (UppP) (PDB:5OON)
Ruegeria pomeroyi DSS-3 3774 0.002765208 0.004981123 0.004398469 0.003717734 SPO3772 K03953 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex Uncharacterized conserved protein YbjT, contains NAD(P)-binding and DUF2867 domains (YbjT) (PDB:5L3Z)
Ruegeria pomeroyi DSS-3 3775 SPO_tRNA-Leu-6 nan
Ruegeria pomeroyi DSS-3 3776 0.19199727 0.002141002 3.67883E-4 6.87444E-4 SPO3774 K02035 nan ABC-type transport system, periplasmic component (DdpA) (PDB:3RQT)
Ruegeria pomeroyi DSS-3 3777 2.99859E-4 SPO3775 K02033 nan ABC-type dipeptide/oligopeptide/nickel transport system, permease component (DppB)
Ruegeria pomeroyi DSS-3 3778 2.79836E-5 SPO3776 K02034 nan ABC-type dipeptide/oligopeptide/nickel transport system, permease component (DppC)
Ruegeria pomeroyi DSS-3 3779 0.001177041 1.36442E-5 4.01446E-6 SPO3777 K02031 nan ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component (DppD) (PDB:4FWI)
Ruegeria pomeroyi DSS-3 3780 0.005806523 4.94602E-5 1.44521E-5 2.19458E-5 SPO3778 K02032 nan ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component (DppD) (PDB:4FWI)
Ruegeria pomeroyi DSS-3 3781 8.18313E-4 1.81847E-6 7.27389E-6 SPO3779 K21645 nan DNA-binding transcriptional regulator, LysR family (LysR) (PDB:2FYI)
Ruegeria pomeroyi DSS-3 3782 3.6612E-6 4.39343E-6 5.85791E-6 1.31803E-5 SPO3780 K07091 nan Lipopolysaccharide export LptBFGC system, permease protein LptF (LptF) (PDB:6S8H)
Ruegeria pomeroyi DSS-3 3783 SPO3781 nan
Ruegeria pomeroyi DSS-3 3784 SPO3782 nan
Ruegeria pomeroyi DSS-3 3785 SPO3783 K17324 nan ABC-type sugar transport system, ATPase component MalK (MalK) (PDB:2ONK)
Ruegeria pomeroyi DSS-3 3786 SPO3784 nan ABC-type sugar transport system, ATPase component MalK (MalK) (PDB:2ONK)
Ruegeria pomeroyi DSS-3 3787 SPO3785 K02025 nan ABC-type sugar transport system, permease component (UgpA) (PDB:3FH6)
Ruegeria pomeroyi DSS-3 3788 SPO3786 K02026 nan ABC-type glycerol-3-phosphate transport system, permease component (UgpE) (PDB:1VR4)
Ruegeria pomeroyi DSS-3 3789 SPO3787 nan ABC-type glycerol-3-phosphate transport system, periplasmic component (UgpB) (PDB:2Z8D)
Ruegeria pomeroyi DSS-3 3790 SPO3788 K21405 nan Transcriptional regulator DhaR of acetoin/glycerol metabolism (AcoR) (PDB:4LRX)
Ruegeria pomeroyi DSS-3 3791 SPO3789 K01607 nan Uncharacterized conserved protein YurZ, alkylhydroperoxidase/carboxymuconolactone decarboxylase family (YurZ) (PDB:3BEY)
Ruegeria pomeroyi DSS-3 3792 SPO3790 nan 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase MenH and related esterases, alpha/beta hydrolase fold (MenH) (PDB:4MYS)
Ruegeria pomeroyi DSS-3 3793 4.39343E-6 SPO3791 K21417 nan Pyruvate/2-oxoglutarate/acetoin dehydrogenase complex, dehydrogenase (E1) component, beta subunit (AcoB) (PDB:2OZL)
Ruegeria pomeroyi DSS-3 3794 SPO3792 K21416 nan TPP-dependent pyruvate or acetoin dehydrogenase subunit alpha (AcoA) (PDB:1DTW)
Ruegeria pomeroyi DSS-3 3795 SPO3793 nan NAD kinase
Ruegeria pomeroyi DSS-3 3796 SPO3794 K09959 nan Uncharacterized conserved protein, DUF779 family
Ruegeria pomeroyi DSS-3 3797 SPO3795 K03092 nan DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog (RpoN) (PDB:5BYH)
Ruegeria pomeroyi DSS-3 3798 SPO_tRNA-Met-5 nan
Ruegeria pomeroyi DSS-3 3799 SPO_Sp5SF nan
Ruegeria pomeroyi DSS-3 3800 SPO_Sp23SC nan
Ruegeria pomeroyi DSS-3 3801 SPO_tRNA-Ala-4 nan
Ruegeria pomeroyi DSS-3 3802 SPO_tRNA-Ile-3 nan
Ruegeria pomeroyi DSS-3 3803 SPO_Sp16SC nan
Ruegeria pomeroyi DSS-3 3804 3.06804E-6 SPO3802 nan
Ruegeria pomeroyi DSS-3 3805 SPO3803 nan AraC-type DNA-binding domain and AraC-containing proteins (AraC) (PDB:1BL0)
Ruegeria pomeroyi DSS-3 3806 2.42835E-4 9.15298E-4 1.15502E-4 1.93333E-4 SPO3804 K20035 nan Acyl-CoA dehydrogenase related to the alkylation response protein AidB (CaiA) (PDB:1BUC)
Ruegeria pomeroyi DSS-3 3807 3.49664E-5 5.68508E-5 8.2274E-6 3.29096E-5 SPO3805 K20036 nan Enoyl-CoA hydratase/carnithine racemase (CaiD) (PDB:1DCI)
Ruegeria pomeroyi DSS-3 3808 1.39033E-5 3.51202E-5 1.39033E-5 3.47582E-6 SPO3806 K03664 nan tmRNA-binding protein (SmpB) (PDB:1J1H) (PUBMED:26251518)
Ruegeria pomeroyi DSS-3 3809 SPO3807 nan
Ruegeria pomeroyi DSS-3 3810 SPO3808 nan
Ruegeria pomeroyi DSS-3 3811 SPO3809 nan DNA-binding transcriptional regulator, ArsR family (ArsR) (PDB:3F6V)
Ruegeria pomeroyi DSS-3 3812 2.28916E-4 1.67141E-4 2.35622E-4 1.72185E-4 SPO3810 K15633 Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate Phosphoglycerate mutase (BPG-independent), AlkP superfamily (GpmI) (PDB:1EJJ)
Ruegeria pomeroyi DSS-3 3813 3.63214E-5 5.45768E-5 5.85984E-5 7.26426E-5 SPO3811 K22719 nan Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB (EnvC)
Ruegeria pomeroyi DSS-3 3814 0.003982477 0.008834835 0.004690128 0.003428959 SPO3812 K03797 nan C-terminal processing protease CtpA/Prc, contains a PDZ domain (CtpA) (PDB:6IQU)
Ruegeria pomeroyi DSS-3 3815 SPO3813 nan
Ruegeria pomeroyi DSS-3 3816 1.08534E-4 4.62165E-4 7.88677E-5 1.51223E-4 SPO3814 nan
Ruegeria pomeroyi DSS-3 3817 4.88923E-5 2.61514E-4 8.03421E-5 8.40419E-5 SPO3815 K02021 nan cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases (Crp) (PDB:1FT9)!!!ABC-type multidrug transport system, ATPase and permease component (MdlB) (PDB:2HYD)
Ruegeria pomeroyi DSS-3 3818 SPO3816 K07052 nan Membrane protease YdiL, CAAX protease family (YdiL)
Ruegeria pomeroyi DSS-3 3819 0.001421044 0.003467602 0.002484131 0.001908134 SPO3817 K01963 3-Hydroxypropionate bi-cycle Acetyl-CoA carboxylase beta subunit (AccD) (PDB:2F9I)
Ruegeria pomeroyi DSS-3 3820 5.14208E-4 6.71349E-4 6.74385E-4 4.73624E-4 SPO3818 K11754 Tetrahydrofolate biosynthesis, GTP => THF Folylpolyglutamate synthase/Dihydropteroate synthase (FolC) (PDB:1W78)
Ruegeria pomeroyi DSS-3 3821 6.22299E-5 1.25072E-5 8.86775E-5 2.80034E-5 SPO3819 K06916 nan Cell division protein ZapE (Z ring-associated ATPase), AFG1 superfamily (ZapE)
Ruegeria pomeroyi DSS-3 3822 SPO3820 nan Predicted arabinose efflux permease AraJ, MFS family (AraJ) (PDB:4LDS)
Ruegeria pomeroyi DSS-3 3823 0.001063807 8.80262E-4 8.58319E-4 0.001006828 SPO3821 nan Ornithine cyclodeaminase/archaeal alanine dehydrogenase, mu-crystallin family (OCDMu) (PDB:2I99)
Ruegeria pomeroyi DSS-3 3824 5.99831E-5 2.21718E-5 2.39933E-5 4.26547E-5 SPO3822 K20866 nan FMN and 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB, HAD superfamily (riboflavin biosynthesis) (YigB) (PDB:4JB3) (PUBMED:24123841)
Ruegeria pomeroyi DSS-3 3825 9.52659E-5 3.78626E-4 0.001025507 7.00484E-5 SPO3823 K02892 nan Ribosomal protein L23 (RplW) (PDB:1VS6)
Ruegeria pomeroyi DSS-3 3826 0.007668413 0.004676548 0.010648712 0.008124276 SPO3824 K02926 nan Ribosomal protein L4 (RplD) (PDB:1VS6)
Ruegeria pomeroyi DSS-3 3827 0.009549105 0.007906812 0.010419967 0.008182993 SPO3825 K02906 nan Ribosomal protein L3 (RplC) (PDB:1VS6)
Ruegeria pomeroyi DSS-3 3828 0.01483047 0.018967515 0.008478829 0.005650206 SPO3826 K02946 nan Ribosomal protein S10 (RpsJ) (PDB:4V4H)
Ruegeria pomeroyi DSS-3 3829 1.42644E-5 2.79615E-5 2.49627E-5 1.42644E-5 SPO3827 K09768 nan Uncharacterized conserved protein YaiI, UPF0178 family (YaiI)
Ruegeria pomeroyi DSS-3 3830 5.60741E-4 7.6976E-4 4.18147E-4 5.58428E-4 SPO3828 K00322 nan Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex or glutathione oxidoreductase (Lpd) (PDB:6QKG)
Ruegeria pomeroyi DSS-3 3831 6.47952E-4 3.19502E-4 6.05809E-4 3.06197E-4 SPO3829 K01070 nan S-formylglutathione hydrolase FrmB (FrmB) (PDB:1DQY)
Ruegeria pomeroyi DSS-3 3832 9.39069E-4 0.00171121 0.001284528 9.33515E-4 SPO3830 K01258 nan Di- or tripeptidase (PepD2) (PDB:2QYV)
Ruegeria pomeroyi DSS-3 3833 1.25251E-4 3.32569E-5 9.57046E-5 8.02892E-5 SPO3831 K19367 nan 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase MenH and related esterases, alpha/beta hydrolase fold (MenH) (PDB:4MYS)
Ruegeria pomeroyi DSS-3 3834 5.31745E-5 7.95912E-5 6.33444E-5 6.39256E-5 SPO3832 K19244 nan Ornithine cyclodeaminase/archaeal alanine dehydrogenase, mu-crystallin family (OCDMu) (PDB:2I99)
Ruegeria pomeroyi DSS-3 3835 1.81986E-4 2.03526E-4 1.59439E-4 3.61825E-4 SPO3833 K05592 nan Superfamily II DNA and RNA helicase (SrmB) (PDB:3RRM)
Ruegeria pomeroyi DSS-3 3836 1.32701E-4 8.41391E-5 1.58561E-4 1.34743E-4 SPO3834 K00215 Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine 4-hydroxy-tetrahydrodipicolinate reductase (DapB) (PDB:1ARZ) (PUBMED:29684280)
Ruegeria pomeroyi DSS-3 3837 1.04805E-5 8.75503E-5 1.03408E-4 1.53714E-5 SPO3835 K02834 nan Ribosome-binding factor RbfA (RbfA) (PDB:1JOS)
Ruegeria pomeroyi DSS-3 3838 1.09836E-4 2.01478E-5 9.93751E-5 7.24767E-5 SPO3836 nan Uncharacterized conserved protein YigE, DUF2233 family (YigE)
Ruegeria pomeroyi DSS-3 3839 8.06549E-5 2.01478E-5 2.26558E-5 5.61866E-5 SPO3837 K03177 nan tRNA U55 pseudouridine synthase TruB, may also work on U342 of tmRNA (TruB) (PDB:1K8W)
Ruegeria pomeroyi DSS-3 3840 3.26892E-6 1.01325E-6 8.82609E-5 8.17231E-6 SPO3838 nan Uncharacterized conserved protein, DUF1643 domain
Ruegeria pomeroyi DSS-3 3841 SPO3839 K01406 nan Ca2+-binding protein, RTX toxin-related (PDB:1AF0) (PUBMED:15135544)
Ruegeria pomeroyi DSS-3 3842 5.70776E-4 9.1075E-4 0.001616684 5.94429E-4 SPO3840 K02956 nan Ribosomal protein S15P/S13E (RpsO) (PDB:4V4H)
Ruegeria pomeroyi DSS-3 3843 3.34865E-5 3.88314E-5 1.07157E-5 2.41103E-5 SPO3841 K18301 Multidrug resistance, efflux pump MexJK-OprM DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA (AcrR) (PDB:2QOP)
Ruegeria pomeroyi DSS-3 3844 2.71199E-5 3.41105E-6 0.001031688 1.69499E-5 SPO3842 K22737 nan Rubrerythrin, includes spore coat protein YhjR (YhjR) (PDB:2E0Z)
Ruegeria pomeroyi DSS-3 3845 SPO3843 K13936 nan Predicted permease, AEC (auxin efflux carrier) family (YfdV)
Ruegeria pomeroyi DSS-3 3846 0.001427983 0.004791387 0.002034454 0.001472718 SPO3844 K02335 nan 5'-3' exonuclease Xni/ExoIX (flap endonuclease) (ExoIX) (PDB:3ZDA) (PUBMED:19000038;23821668)!!!DNA polymerase I, 3'-5' exonuclease and polymerase domains (PolA) (PDB:1D8Y)
Ruegeria pomeroyi DSS-3 3847 SPO3845 nan
Ruegeria pomeroyi DSS-3 3848 9.30812E-6 1.4893E-4 8.99785E-5 SPO3846 K03939 NADH dehydrogenase (ubiquinone) Fe-S protein/flavoprotein complex, mitochondria Uncharacterized protein, contains Zn-finger domain (PDB:2JRR)
Ruegeria pomeroyi DSS-3 3849 7.55346E-5 4.39343E-6 8.11625E-5 1.52254E-4 SPO3847 K01990 nan ABC-type multidrug transport system, ATPase component (CcmA) (PDB:5DO7)
Ruegeria pomeroyi DSS-3 3850 SPO3848 K00227 Cholesterol biosynthesis, squalene 2,3-epoxide => cholesterol Sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily (ERG3) (PDB:4ZR0)
Ruegeria pomeroyi DSS-3 3851 SPO3849 nan
Ruegeria pomeroyi DSS-3 3852 0.005576392 0.007969348 0.003511776 0.004542847 SPO3850 K00121 nan Zn-dependent alcohol/formaldehyde dehydrogenase (FrmA) (PDB:1A71)
Ruegeria pomeroyi DSS-3 3853 0.002620575 0.004339991 0.002705421 0.002360466 SPO3851 K02498 nan Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to HemY-type protoporphyrinogen oxidase) (HemYx)
Ruegeria pomeroyi DSS-3 3854 8.37133E-4 0.001621386 0.001184622 7.61804E-4 SPO3852 nan Uncharacterized conserved protein
Ruegeria pomeroyi DSS-3 3855 2.08549E-5 9.26884E-6 2.31721E-6 SPO3853 K01719 Siroheme biosynthesis, glutamyl-tRNA => siroheme Uroporphyrinogen-III synthase (HemD) (PDB:1JR2)
Ruegeria pomeroyi DSS-3 3856 6.0184E-6 6.0184E-6 2.2569E-5 SPO3854 K01409 nan tRNA A37 threonylcarbamoyltransferase TsaD (TsaD) (PDB:3ENO) (PUBMED:23072323;21285948;32385138)
Ruegeria pomeroyi DSS-3 3857 8.58094E-6 2.17383E-5 2.05942E-5 SPO3855 K00057 nan Glycerol-3-phosphate dehydrogenase (GpsA) (PDB:1EVY)
Ruegeria pomeroyi DSS-3 3858 2.46822E-5 1.36442E-5 3.49664E-4 5.55349E-5 SPO3856 K09780 nan YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHis (YciI) (PDB:1MWQ) (PUBMED:15779043;23955343)
Ruegeria pomeroyi DSS-3 3859 2.21633E-4 5.77231E-4 5.71408E-4 2.75897E-4 SPO3857 nan Predicted RNA-binding protein, contains EVE domain (EVE) (PDB:1ZCE) (PUBMED:32652237)
Ruegeria pomeroyi DSS-3 3860 SPO3858 nan
Ruegeria pomeroyi DSS-3 3861 0.002461585 0.002701551 0.006580427 0.004375611 SPO3859 nan Ribosomal protein S1 (RpsA) (PDB:4NNH)
Ruegeria pomeroyi DSS-3 3862 SPO3860 nan Predicted secreted Zn-dependent protease
Ruegeria pomeroyi DSS-3 3863 0.004351233 0.013685129 0.006662261 0.005752114 SPO3861 K01251 Methionine degradation S-adenosylhomocysteine hydrolase (SAM1) (PDB:1A7A)
Ruegeria pomeroyi DSS-3 3864 SPO3862 nan
Ruegeria pomeroyi DSS-3 3865 4.46034E-5 8.73485E-5 4.04218E-5 SPO3863 K06952 nan 5'-deoxynucleotidase YfbR and related HD superfamily hydrolases (YfbR) (PDB:2PAQ)
Ruegeria pomeroyi DSS-3 3866 6.5794E-5 2.05154E-4 8.86207E-5 9.17536E-5 SPO3864 nan Capsular polysaccharide biosynthesis protein
Ruegeria pomeroyi DSS-3 3867 5.50671E-4 6.77662E-4 3.92981E-4 8.08845E-4 SPO3865 K15012 nan DNA-binding response regulator, ActR/RegA family, consists of REC and Fis-type HTH domains (PDB:3RQI)
Ruegeria pomeroyi DSS-3 3868 1.98611E-4 2.25129E-4 1.71507E-4 1.35962E-4 SPO3866 K07152 nan Cytochrome oxidase Cu insertion factor, SCO1/SenC/PrrC family (Sco1) (PDB:1ON4)
Ruegeria pomeroyi DSS-3 3869 1.88965E-5 6.13989E-5 3.07068E-5 1.96838E-5 SPO3867 K15011 nan Signal transduction histidine kinase (BaeS) (PDB:1JOY)
Ruegeria pomeroyi DSS-3 3870 1.59262E-4 1.36442E-5 6.22403E-6 6.37048E-5 SPO3868 nan RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains (RocR)
Ruegeria pomeroyi DSS-3 3871 1.39918E-5 1.39918E-5 2.27367E-5 SPO3869 K06925 nan tRNA A37 threonylcarbamoyladenosine biosynthesis protein TsaE (TsaE) (PDB:1FL9)
Ruegeria pomeroyi DSS-3 3872 1.30909E-4 1.39853E-4 1.42084E-4 1.60709E-4 SPO3870 K07102 nan Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family
Ruegeria pomeroyi DSS-3 3873 2.40868E-6 2.40868E-6 2.40868E-6 SPO3871 K00992 nan NDP-sugar pyrophosphorylase, includes eIF-2Bgamma, eIF-2Bepsilon, and LPS biosynthesis protein s (GCD1) (PDB:6JQ8)
Ruegeria pomeroyi DSS-3 3874 2.08407E-4 2.66062E-4 9.12482E-5 2.48961E-4 SPO3872 K16899 nan RecB family exonuclease (Slr0479)!!!Inactivated superfamily I helicase
Ruegeria pomeroyi DSS-3 3875 1.50558E-4 1.74974E-4 1.02991E-4 1.07085E-4 SPO3873 K16898 nan 3-5 helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V) (RecB) (PDB:3U44) (PUBMED:29901759;30601118)
Ruegeria pomeroyi DSS-3 3876 0.001981707 0.001429239 0.006785295 0.002552473 SPO3874 K03671 nan Chaperedoxin CnoX, contains thioredoxin-like and TPR-like domains, YbbN/TrxSC family (CnoX) (PDB:3QDN) (PUBMED:21498507;29754824)
Ruegeria pomeroyi DSS-3 3877 SPO3875 nan
Ruegeria pomeroyi DSS-3 3878 4.39343E-6 SPO3876 nan
Ruegeria pomeroyi DSS-3 3879 SPO3877 K23988 nan Protein-tyrosine-phosphatase (Wzb) (PDB:4D74) (PUBMED:26641313)!!!DNA-binding transcriptional regulator, ArsR family (ArsR) (PDB:3F6V)
Ruegeria pomeroyi DSS-3 3880 4.13538E-6 8.52763E-6 2.0677E-5 3.3083E-6 SPO3878 K25224 nan Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase (GapA) (PDB:3ZDF)
Ruegeria pomeroyi DSS-3 3881 SPO3879 K25223 nan Predicted arabinose efflux permease AraJ, MFS family (AraJ) (PDB:4LDS)
Ruegeria pomeroyi DSS-3 3882 7.71818E-5 5.68508E-5 2.10766E-4 5.54126E-5 SPO3880 K01419 nan ATP-dependent protease HslVU (ClpYQ), peptidase subunit (HslV) (PDB:5JI3)
Ruegeria pomeroyi DSS-3 3883 SPO3881 nan
Ruegeria pomeroyi DSS-3 3884 7.5812E-4 0.002086825 7.01939E-4 7.96625E-4 SPO3882 K03667 nan ATP-dependent protease HslVU (ClpYQ), ATPase subunit HslU (HslU) (PDB:1DO0)
Ruegeria pomeroyi DSS-3 3885 5.46186E-5 3.86585E-5 3.741E-6 4.28968E-5 SPO3883 nan Esterase/lipase superfamily enzyme
Ruegeria pomeroyi DSS-3 3886 1.36442E-5 2.80193E-6 SPO3884 nan DNA-nicking endonuclease, Smr domain (SmrA) (PDB:3QD7) (PUBMED:12730195)
Ruegeria pomeroyi DSS-3 3887 6.34888E-5 2.21718E-5 6.4018E-5 3.01573E-5 SPO3885 K08304 nan Membrane-bound lytic murein transglycosylase (MltA) (PDB:2AE0)
Ruegeria pomeroyi DSS-3 3888 0.005111395 0.008882244 0.006877332 0.005815922 SPO3886 nan Predicted lipid-binding transport protein, Tim44 family (Tim44) (PDB:2CW9)
Ruegeria pomeroyi DSS-3 3889 8.42299E-5 6.48099E-5 1.1343E-4 3.25689E-5 SPO3887 K07113 nan FxsA protein affecting phage T7 exclusion by the F plasmid, UPF0716 family (FxsA)
Ruegeria pomeroyi DSS-3 3890 0.002852402 0.003453118 0.005354217 0.004005123 SPO3888 K03071 nan Preprotein translocase subunit SecB (SecB) (PDB:1OZB)
Ruegeria pomeroyi DSS-3 3891 1.36442E-5 9.115E-6 2.27875E-6 SPO3889 K02342 nan DNA polymerase III, epsilon subunit or related 3'-5' exonuclease (DnaQ) (PDB:1J53)
Ruegeria pomeroyi DSS-3 3892 3.48464E-5 6.13989E-5 1.00358E-4 1.81201E-5 SPO3890 K00859 Coenzyme A biosynthesis, pantothenate => CoA Dephospho-CoA kinase (CoaE) (PDB:1JJV)
Ruegeria pomeroyi DSS-3 3893 0.001816057 0.002255149 0.001632337 0.001357417 SPO3891 K00014 Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate Shikimate 5-dehydrogenase (AroE) (PDB:1NPD)
Ruegeria pomeroyi DSS-3 3894 4.69148E-5 4.66177E-5 7.08321E-5 5.24342E-5 SPO3892 K06287 nan 7-methyl-GTP pyrophosphatase and related NTP pyrophosphatases, Maf/HAM1 superfamily (Maf) (PDB:2P5X) (PUBMED:24210219)
Ruegeria pomeroyi DSS-3 3895 1.46448E-5 3.66119E-6 2.68487E-5 SPO3893 K08973 Heme biosynthesis, plants and bacteria, glutamate => heme Protoporphyrinogen oxidase HemJ (unrelated to HemG or HemY) (HemJ) (PUBMED:20823222;21642412;25108393;29925590)
Ruegeria pomeroyi DSS-3 3896 0.003531363 0.008625406 0.005495684 0.004641405 SPO3894 K03628 nan Transcription termination factor Rho (Rho) (PDB:1PVO)
Ruegeria pomeroyi DSS-3 3897 3.91354E-5 4.94602E-5 1.24036E-5 2.99397E-5 SPO3895 K03650 nan tRNA U34 5-carboxymethylaminomethyl modifying GTPase MnmE/TrmE (MnmE)
Ruegeria pomeroyi DSS-3 3898 1.76152E-5 1.215E-5 2.07237E-5 8.28949E-6 SPOA0449 K00477 nan Ectoine hydroxylase-related dioxygenase, phytanoyl-CoA dioxygenase (PhyH) family (PhyH) (PDB:2A1X)
Ruegeria pomeroyi DSS-3 3899 1.82451E-6 7.71908E-6 1.33798E-5 SPOA0001 nan
Ruegeria pomeroyi DSS-3 3900 5.80086E-4 0.001762262 4.91725E-4 5.61462E-4 SPOA0002 K06168 nan tRNA A37 methylthiotransferase MiaB (MiaB) (PDB:4JC0) (PUBMED:17407324;20472640;20584901)
Ruegeria pomeroyi DSS-3 3901 SPOA0003 nan
Ruegeria pomeroyi DSS-3 3902 8.81737E-4 5.28613E-4 0.00166991 7.83088E-4 SPOA0004 K03286 nan Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins (OmpA) (PDB:1OAP)
Ruegeria pomeroyi DSS-3 3903 1.41541E-4 2.45204E-4 0.00124556 2.7459E-4 SPOA0005 nan Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins (OmpA) (PDB:1OAP)
Ruegeria pomeroyi DSS-3 3904 7.22432E-4 6.85052E-4 3.97719E-4 5.00145E-4 SPOA0006 K06217 nan Phosphate starvation-inducible protein PhoH, predicted ATPase (PhoH) (PDB:3B85) (PUBMED:8444794;12762842)
Ruegeria pomeroyi DSS-3 3905 SPOA0007 nan
Ruegeria pomeroyi DSS-3 3906 2.4408E-5 3.32836E-6 SPOA0008 K07042 nan ssRNA-specific RNase YbeY, 16S rRNA maturation enzyme (YbeY) (PDB:1XM5) (PUBMED:17407324;23543739)
Ruegeria pomeroyi DSS-3 3907 1.21005E-5 2.89939E-5 2.79244E-5 1.17903E-5 SPOA0009 K06189 nan Hemolysin-related protein, contains CBS domains, UPF0053 family (TlyC) (PDB:2NQW)
Ruegeria pomeroyi DSS-3 3908 4.26381E-5 1.08748E-6 SPOA0010 K03820 nan Apolipoprotein N-acyltransferase (Lnt) (PDB:6NWR)
Ruegeria pomeroyi DSS-3 3909 0.006897575 0.015160976 0.007945161 0.0072786 SPOA0011 K00789 Cysteine biosynthesis, methionine => cysteine S-adenosylmethionine synthetase (MetK) (PDB:1FUG)
Ruegeria pomeroyi DSS-3 3910 3.23046E-6 8.07618E-6 SPOA0012 nan Adenylate kinase or related kinase (Adk) (PDB:1AK2)
Ruegeria pomeroyi DSS-3 3911 4.22445E-5 3.41105E-6 9.93989E-6 2.23648E-5 SPOA0013 nan Predicted periplasmic protein
Ruegeria pomeroyi DSS-3 3912 1.35557E-4 5.43316E-5 1.92328E-4 2.0237E-4 SPOA0014 K03439 nan tRNA G46 N7-methylase TrmB (TrmB) (PDB:1YZH) (PUBMED:19373903;16600901)
Ruegeria pomeroyi DSS-3 3913 0.001927643 0.003869266 0.002101917 0.002253922 SPOA0015 K00800 Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate 5-enolpyruvylshikimate-3-phosphate synthase (AroA) (PDB:4N3P)
Ruegeria pomeroyi DSS-3 3914 4.55416E-5 1.02331E-4 1.31267E-4 2.58962E-5 SPOA0017 K00945 nan Cytidylate kinase (Cmk) (PDB:3R20) (PUBMED:19111750;25691594;28928205)
Ruegeria pomeroyi DSS-3 3915 SPOA0018 nan Heavy metal-bindng TRASH/YHS domain, predicted Cu/Ag metallochaperone (YHS)
Ruegeria pomeroyi DSS-3 3916 SPOA0019 nan Uncharacterized membrane protein YjcL
Ruegeria pomeroyi DSS-3 3917 SPOA0020 nan D-serine deaminase, pyridoxal phosphate-dependent (Dsd1) (PDB:3ANU)
Ruegeria pomeroyi DSS-3 3918 SPOA0021 K05888 nan FAD/FMN-containing lactate dehydrogenase/glycolate oxidase (GlcD) (PDB:1AHU)
Ruegeria pomeroyi DSS-3 3919 SPOA0022 nan Cytochrome c5 (CytC5) (PDB:1CC5)
Ruegeria pomeroyi DSS-3 3920 1.00767E-5 SPOA0023 nan DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA (AcrR) (PDB:2QOP)
Ruegeria pomeroyi DSS-3 3921 1.40392E-4 3.55867E-5 1.93382E-4 1.91318E-4 SPOA0024 K02509 nan 2-keto-4-pentenoate hydratase (MhpD) (PDB:1SV6)
Ruegeria pomeroyi DSS-3 3922 2.36749E-4 4.30803E-4 1.52657E-4 9.3147E-5 SPOA0025 nan 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) (YcgM) (PDB:1GTT)
Ruegeria pomeroyi DSS-3 3923 SPOA0026 K00455 Homoprotocatechuate degradation, homoprotocatechuate => 2-oxohept-3-enedioate Aromatic ring-opening dioxygenase, catalytic subunit, LigB family (LigB) (PDB:2PW6) (PUBMED:23258706)
Ruegeria pomeroyi DSS-3 3924 1.09398E-6 1.36442E-5 SPOA0027 K00151 Homoprotocatechuate degradation, homoprotocatechuate => 2-oxohept-3-enedioate Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenase (AdhE) (PDB:1A4S)
Ruegeria pomeroyi DSS-3 3925 0.00195407 0.004257128 0.001838377 0.00195796 SPOA0028 K00346 nan Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrA (NqrA) (PDB:4P6V)
Ruegeria pomeroyi DSS-3 3926 8.87974E-6 6.75149E-5 8.87974E-6 1.36612E-6 SPOA0029 K00347 nan Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrB (NqrB) (PDB:4P6V)
Ruegeria pomeroyi DSS-3 3927 6.68477E-4 4.69335E-4 7.2264E-4 5.10784E-4 SPOA0030 K00348 nan Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrC (NqrC) (PDB:4P6V)
Ruegeria pomeroyi DSS-3 3928 SPOA0031 K00349 nan Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrD (NqrD) (PDB:4P6V)
Ruegeria pomeroyi DSS-3 3929 SPOA0032 K00350 nan Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrE (NqrE) (PDB:4P6V)
Ruegeria pomeroyi DSS-3 3930 0.002110822 0.00410146 0.002381128 0.002092561 SPOA0033 K00351 nan Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF (NqrF) (PDB:4P6V)
Ruegeria pomeroyi DSS-3 3931 0.001207247 9.9462E-4 8.52174E-4 4.85003E-4 SPOA0034 nan Signal-transduction protein containing cAMP-binding, CBS, and nucleotidyltransferase domains
Ruegeria pomeroyi DSS-3 3932 SPOA0035 nan
Ruegeria pomeroyi DSS-3 3933 4.53339E-4 4.15011E-4 3.74233E-4 2.32247E-4 SPOA0036 K03734 nan FAD:protein FMN transferase ApbE (ApbE) (PDB:1VRM) (PUBMED:23558683;30154099)
Ruegeria pomeroyi DSS-3 3934 SPOA0037 K05952 nan Na+-NQR maturation protein NqrM (NqrM) (PUBMED:26644436)
Ruegeria pomeroyi DSS-3 3935 2.07874E-4 1.02016E-4 1.20323E-4 8.33369E-5 SPOA0038 nan DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains (CitB) (PDB:1A04)
Ruegeria pomeroyi DSS-3 3936 0.002841722 0.009752934 0.00403963 0.001813121 SPOA0039 nan Cytochrome c, mono- and diheme variants (CccA) (PDB:1A2S)
Ruegeria pomeroyi DSS-3 3937 SPOA0040 K06199 nan Fluoride ion exporter CrcB/FEX, affects chromosome condensation (CrcB) (PDB:5A40)
Ruegeria pomeroyi DSS-3 3938 SPOA0041 K06199 nan Fluoride ion exporter CrcB/FEX, affects chromosome condensation (CrcB) (PDB:5A40)
Ruegeria pomeroyi DSS-3 3939 1.09642E-4 7.12025E-5 2.02465E-4 2.0764E-4 SPOA0042 K18013 nan Uncharacterized conserved protein, DUF849 family (PDB:3C6C)
Ruegeria pomeroyi DSS-3 3940 2.66592E-5 1.36442E-5 2.39933E-5 6.66481E-6 SPOA0043 K00448 nan Protocatechuate 3,4-dioxygenase beta subunit (PcaH) (PDB:1DLM)
Ruegeria pomeroyi DSS-3 3941 2.0424E-5 3.41105E-6 2.0424E-5 1.05902E-5 SPOA0044 K00449 nan Protocatechuate 3,4-dioxygenase beta subunit (PcaH) (PDB:1DLM)
Ruegeria pomeroyi DSS-3 3942 SPOA0045 K01607 nan Uncharacterized conserved protein YurZ, alkylhydroperoxidase/carboxymuconolactone decarboxylase family (YurZ) (PDB:3BEY)
Ruegeria pomeroyi DSS-3 3943 SPOA0046 K00481 nan 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases (UbiH) (PDB:1BF3)
Ruegeria pomeroyi DSS-3 3944 SPOA0047 K02623 nan DNA-binding transcriptional regulator, LysR family (LysR) (PDB:2FYI)
Ruegeria pomeroyi DSS-3 3945 SPOA0048 nan
Ruegeria pomeroyi DSS-3 3946 SPOA0049 K19339 nan Polyferredoxin NapH (NapH) (PUBMED:27322068)!!!Transcriptional regulator NosR of nitric oxide reductase (NosR)
Ruegeria pomeroyi DSS-3 3947 SPOA0050 K00376 Denitrification, nitrate => nitrogen Nitrous oxide reductase (NosZ) (PDB:1FWX)
Ruegeria pomeroyi DSS-3 3948 SPOA0051 K07218 nan Nitrous oxide reductase accessory protein NosD, contains tandem CASH domains (NosD) (PDB:2KZW)
Ruegeria pomeroyi DSS-3 3949 SPOA0052 K19340 nan ABC-type multidrug transport system, ATPase component (CcmA) (PDB:5DO7)
Ruegeria pomeroyi DSS-3 3950 SPOA0053 K19341 nan ABC-type transport system involved in multi-copper enzyme maturation, permease component (NosY)
Ruegeria pomeroyi DSS-3 3951 SPOA0054 K19342 nan Nitrous oxide reductase accessory protein NosL (NosL) (PDB:2HPU)
Ruegeria pomeroyi DSS-3 3952 SPOA0055 K08738 nan Cytochrome c2 (Cyc7) (PDB:1YEA)
Ruegeria pomeroyi DSS-3 3953 1.07682E-5 1.07682E-5 SPOA0056 K15773 nan Transcriptional regulator, contains XRE-family HTH domain (HipB) (PDB:1ADR)
Ruegeria pomeroyi DSS-3 3954 0.002384791 0.00180632 0.002200226 0.002053277 SPOA0057 K00605 Photorespiration Glycine cleavage system protein T (aminomethyltransferase) (GcvT) (PDB:2GAH) (PUBMED:25433025;25505271)
Ruegeria pomeroyi DSS-3 3955 2.65512E-4 2.058E-4 2.49627E-4 3.38131E-4 SPOA0058 K02437 Photorespiration Glycine cleavage system protein H (lipoate-binding) (GcvH) (PDB:1DXM)
Ruegeria pomeroyi DSS-3 3956 0.007093176 0.031931967 0.005182202 0.006121537 SPOA0059 K00281 Photorespiration Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain (GcvP1) (PDB:4LGL)!!!Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain (GcvP2) (PDB:4LGL)
Ruegeria pomeroyi DSS-3 3957 SPOA0060 nan Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH domain (GlxA)
Ruegeria pomeroyi DSS-3 3958 0.008303419 0.022665283 0.011615146 0.008557975 SPOA0061 K03782 nan Catalase (peroxidase I) (KatG) (PDB:5SX1) (PUBMED:31337720)
Ruegeria pomeroyi DSS-3 3959 1.00604E-4 2.4408E-5 1.53076E-4 5.91788E-5 SPOA0062 K01779 nan Amino acid racemase YgeA (RacX) (PDB:5ELL)
Ruegeria pomeroyi DSS-3 3960 6.77163E-7 1.72321E-5 2.70865E-6 1.69291E-6 SPOA0063 K00315 nan Glycine cleavage system protein T (aminomethyltransferase) (GcvT) (PDB:2GAH) (PUBMED:25433025;25505271)!!!Glycine/D-amino acid oxidase (deaminating) (DadA) (PDB:3AWI)
Ruegeria pomeroyi DSS-3 3961 2.11223E-6 3.94924E-5 3.52038E-5 2.11223E-6 SPOA0064 K01482 nan N-Dimethylarginine dimethylaminohydrolase (DdaH) (PDB:6LRH)
Ruegeria pomeroyi DSS-3 3962 3.41105E-6 1.03035E-6 SPOA0065 nan Acetolactate synthase large subunit or other thiamine pyrophosphate-requiring enzyme (IlvB) (PDB:1BFD)
Ruegeria pomeroyi DSS-3 3963 1.39033E-6 1.8365E-5 1.73791E-5 2.36356E-5 SPOA0066 K12252 nan Aspartate/methionine/tyrosine aminotransferase (AspB) (PDB:2O0R)
Ruegeria pomeroyi DSS-3 3964 SPOA0067 K02167 nan DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA (AcrR) (PDB:2QOP)
Ruegeria pomeroyi DSS-3 3965 SPOA0068 K02028 nan ABC-type histidine transport system, ATPase component (HisP) (PDB:1B0U)
Ruegeria pomeroyi DSS-3 3966 4.39773E-5 4.64431E-5 1.05116E-4 5.00554E-5 SPOA0069 K02030 nan ABC-type amino acid transport/signal transduction system, periplasmic component/domain (HisJ) (PDB:1GGG)
Ruegeria pomeroyi DSS-3 3967 SPOA0070 nan ABC-type arginine transport system, permease component (ArtQ)
Ruegeria pomeroyi DSS-3 3968 SPOA0071 K02029 nan ABC-type arginine/histidine transport system, permease component (ArtM)
Ruegeria pomeroyi DSS-3 3969 0.001175107 9.28511E-4 8.59585E-4 0.001411038 SPOA0072 nan Uncharacterized conserved protein, UPF0262 family
Ruegeria pomeroyi DSS-3 3970 3.41105E-6 SPOA0073 nan Protein-tyrosine-phosphatase (Wzb) (PDB:4D74) (PUBMED:26641313)
Ruegeria pomeroyi DSS-3 3971 1.26894E-4 5.52843E-5 3.16194E-4 9.15297E-5 SPOA0074 K06893 nan Ketosteroid isomerase-related protein (YesE) (PDB:1Z1S)
Ruegeria pomeroyi DSS-3 3972 1.81201E-5 4.75652E-6 3.34525E-5 1.11508E-5 SPOA0075 nan
Ruegeria pomeroyi DSS-3 3973 2.81961E-4 2.65948E-4 2.49403E-4 2.0026E-4 SPOA0076 nan Omega-amidase YafV/Nit2, hydrolyzes alpha-ketoglutaramate (Nit2) (PUBMED:28373563)
Ruegeria pomeroyi DSS-3 3974 8.42837E-4 3.36669E-4 7.98343E-4 0.001235653 SPOA0077 K02518 nan Translation initiation factor IF-1 (InfA) (PDB:5FIM)
Ruegeria pomeroyi DSS-3 3975 SPOA0078 K06287 nan 7-methyl-GTP pyrophosphatase and related NTP pyrophosphatases, Maf/HAM1 superfamily (Maf) (PDB:2P5X) (PUBMED:24210219)
Ruegeria pomeroyi DSS-3 3976 2.01904E-5 1.12564E-4 2.20748E-5 5.00722E-5 SPOA0079 nan Ribonuclease G or E (CafA) (PDB:1SLJ)
Ruegeria pomeroyi DSS-3 3977 SPOA0450 K09862 nan Endogenous inhibitor of DNA gyrase, YacG/DUF329 family (YacG) (PDB:1LV3) (PUBMED:18586829)
Ruegeria pomeroyi DSS-3 3978 SPOA_tRNA-Phe-1 nan
Ruegeria pomeroyi DSS-3 3979 SPOA0081 nan
Ruegeria pomeroyi DSS-3 3980 8.06299E-6 3.08763E-5 3.58355E-6 8.95888E-6 SPOA0082 K07459 nan Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM domains (YbjD)
Ruegeria pomeroyi DSS-3 3981 1.8705E-5 4.05298E-6 2.39424E-5 9.7266E-6 SPOA0083 nan
Ruegeria pomeroyi DSS-3 3982 SPOA0084 nan
Ruegeria pomeroyi DSS-3 3983 7.62748E-6 SPOA0085 K07729 nan DNA-binding transcriptional regulator, XRE-family HTH domain (XRE) (PDB:1UTX)
Ruegeria pomeroyi DSS-3 3984 3.41105E-6 SPOA0086 nan RecA-family ATPase (RepA)
Ruegeria pomeroyi DSS-3 3985 SPOA0087 nan Site-specific recombinase XerD (XerD) (PDB:1A0P)
Ruegeria pomeroyi DSS-3 3986 7.41149E-5 4.36745E-5 6.723E-5 7.28999E-5 SPOA0087a nan
Ruegeria pomeroyi DSS-3 3987 1.79002E-5 9.78543E-6 1.67069E-5 SPOA0088 nan
Ruegeria pomeroyi DSS-3 3988 SPOA0089 nan Site-specific recombinase XerD (XerD) (PDB:1A0P)
Ruegeria pomeroyi DSS-3 3989 SPOA0090 K07492 nan Transposase
Ruegeria pomeroyi DSS-3 3990 SPOA0091 nan
Ruegeria pomeroyi DSS-3 3991 4.79838E-4 8.69347E-4 2.20411E-4 3.0362E-4 SPOA0093 nan FAD/FMN-containing lactate dehydrogenase/glycolate oxidase (GlcD) (PDB:1AHU)
Ruegeria pomeroyi DSS-3 3992 SPOA0094 nan
Ruegeria pomeroyi DSS-3 3993 1.33754E-5 3.02157E-5 3.93394E-6 SPOA0095 nan
Ruegeria pomeroyi DSS-3 3994 SPOA0096 nan Acetoin utilization deacetylase AcuC or a related deacetylase (AcuC) (PDB:1C3P)
Ruegeria pomeroyi DSS-3 3995 SPOA0097 K01998 nan ABC-type branched-chain amino acid transport system, permease component (LivM)
Ruegeria pomeroyi DSS-3 3996 SPOA0098 K01997 nan Branched-chain amino acid ABC-type transport system, permease component (LivH)
Ruegeria pomeroyi DSS-3 3997 SPOA0099 K01996 nan ABC-type branched-chain amino acid transport system, ATPase component LivF (LivF) (PDB:1JI0) (PUBMED:26527648;32250026)
Ruegeria pomeroyi DSS-3 3998 SPOA0100 K01995 nan ABC-type branched-chain amino acid transport system, ATPase component LivG (LivG) (PDB:1G9X) (PUBMED:29514851)
Ruegeria pomeroyi DSS-3 3999 SPOA0101 nan ABC-type branched-chain amino acid transport system, periplasmic component (LivK) (PDB:1USG)
Ruegeria pomeroyi DSS-3 4000 SPOA0102 nan DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains (CitB) (PDB:1A04)
Ruegeria pomeroyi DSS-3 4001 SPOA0103 nan Ketosteroid isomerase homolog YybH (YybH) (PDB:2GXF)
Ruegeria pomeroyi DSS-3 4002 SPOA0104 nan Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenase (AdhE) (PDB:1A4S)
Ruegeria pomeroyi DSS-3 4003 SPOA0105 nan DNA-binding transcriptional regulator, HxlR family (HxlR) (PDB:1YYV)
Ruegeria pomeroyi DSS-3 4004 SPOA0106 nan Predicted SnoaL-like aldol condensation-catalyzing enzyme (PUBMED:15071504)
Ruegeria pomeroyi DSS-3 4005 SPOA0107 K03566 nan DNA-binding transcriptional regulator, LysR family (LysR) (PDB:2FYI)
Ruegeria pomeroyi DSS-3 4006 SPOA0108 nan Predicted arabinose efflux permease AraJ, MFS family (AraJ) (PDB:4LDS)
Ruegeria pomeroyi DSS-3 4007 1.39033E-5 1.39033E-5 SPOA0451 K06075 nan DNA-binding transcriptional regulator, MarR family (MarR) (PDB:1JGS)
Ruegeria pomeroyi DSS-3 4008 7.87038E-5 9.71998E-6 5.71331E-5 7.17081E-5 SPOA0452 nan DNA-binding transcriptional regulator, MarR family (MarR) (PDB:1JGS)
Ruegeria pomeroyi DSS-3 4009 SPOA0109 K01075 nan Acyl-CoA thioesterase FadM (FadM) (PDB:2FUJ)
Ruegeria pomeroyi DSS-3 4010 SPOA0110 K00180 nan Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, gamma subunit (PorG) (PDB:1B0P)
Ruegeria pomeroyi DSS-3 4011 SPOA0111 K00179 nan TPP-dependent indolepyruvate ferredoxin oxidoreductase, alpha subunit (IorA)
Ruegeria pomeroyi DSS-3 4012 SPOA0112 K00146 nan Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenase (AdhE) (PDB:1A4S)
Ruegeria pomeroyi DSS-3 4013 SPOA0113 nan Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (BioA) (PDB:1MLY)
Ruegeria pomeroyi DSS-3 4014 SPOA0114 K01501 nan Omega-amidase YafV/Nit2, hydrolyzes alpha-ketoglutaramate (Nit2) (PUBMED:28373563)
Ruegeria pomeroyi DSS-3 4015 SPOA0115 K00450 nan Gentisate 1,2-dioxygenase (PDB:3BU7)
Ruegeria pomeroyi DSS-3 4016 7.20235E-6 7.20235E-6 SPOA0116 nan 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) (YcgM) (PDB:1GTT)
Ruegeria pomeroyi DSS-3 4017 SPOA0117 K01799 Nicotinate degradation, nicotinate => fumarate Maleate cis-trans isomerase (PDB:2DGD)
Ruegeria pomeroyi DSS-3 4018 SPOA0118 K07794 nan
Ruegeria pomeroyi DSS-3 4019 SPOA0119 K07793 nan TctA family transporter (PUBMED:14499931)
Ruegeria pomeroyi DSS-3 4020 SPOA0120 K07795 nan Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC (TctC) (PDB:2DVZ)
Ruegeria pomeroyi DSS-3 4021 9.94889E-7 0.0 9.94889E-7 SPOA0121 nan Arylsulfatase A or related enzyme, AlkP superfamily (AslA) (PDB:1E1Z)
Ruegeria pomeroyi DSS-3 4022 SPOA0122 nan Transposase and inactivated derivatives, IS5 family (IS5)
Ruegeria pomeroyi DSS-3 4023 5.35254E-4 0.001482297 0.001054171 6.77654E-4 SPOA0123 nan Uncharacterized conserved protein, contains CHAT domain (PUBMED:11835511)
Ruegeria pomeroyi DSS-3 4024 1.71828E-4 9.92615E-4 2.65306E-4 2.10537E-4 SPOA0124 nan Predicted ATP-binding protein involved in virulence
Ruegeria pomeroyi DSS-3 4025 4.62272E-6 2.187E-5 1.84909E-6 1.84909E-6 SPOA0125 nan Predicted ATP-binding protein involved in virulence
Ruegeria pomeroyi DSS-3 4026 SPOA0126 K00059 Fatty acid biosynthesis, elongation NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family (FabG) (PDB:6L1H)
Ruegeria pomeroyi DSS-3 4027 SPOA0127 K01475 nan Kynurenine formamidase (PDB:1R61)
Ruegeria pomeroyi DSS-3 4028 SPOA0128 K07068 nan Short-chain dehydrogenase (YqjQ)!!!Uncharacterized OB-fold protein, contains Zn-ribbon domain (PDB:3IRB)
Ruegeria pomeroyi DSS-3 4029 SPOA0129 K00626 Ethylmalonyl pathway Acetyl-CoA acetyltransferase (PaaJ) (PDB:1AFW)
Ruegeria pomeroyi DSS-3 4030 SPOA0130 K02182 nan O-succinylbenzoic acid-CoA ligase MenE or related acyl-CoA synthetase (AMP-forming) (MenE/FadK) (PDB:5EY9) (PUBMED:25151136;27455459)
Ruegeria pomeroyi DSS-3 4031 SPOA0131 nan 3-phenylpropionate/cinnamic acid dioxygenase, small subunit (HcaF)
Ruegeria pomeroyi DSS-3 4032 SPOA0132 nan Phenylpropionate dioxygenase or related ring-hydroxylating dioxygenase, large terminal subunit (HcaE) (PDB:4QDC)
Ruegeria pomeroyi DSS-3 4033 SPOA0133 nan Ferredoxin (Fdx) (PDB:1KRH)!!!Flavodoxin/ferredoxin--NADP reductase (Fpr) (PDB:3OZU)
Ruegeria pomeroyi DSS-3 4034 SPOA0134 K07492 nan Transposase
Ruegeria pomeroyi DSS-3 4035 SPOA_tRNA-Thr-1 nan
Ruegeria pomeroyi DSS-3 4036 SPOA0136 nan
Ruegeria pomeroyi DSS-3 4037 0.001479914 0.001795726 7.32673E-4 0.001162276 SPOA0137 K00790 nan UDP-N-acetylglucosamine enolpyruvyl transferase (MurA) (PDB:1A2N)
Ruegeria pomeroyi DSS-3 4038 1.54674E-4 2.45822E-4 4.75027E-5 1.03116E-4 SPOA0138 nan
Ruegeria pomeroyi DSS-3 4039 3.45396E-6 SPOA0139 nan N-acetylglutamate synthase or related acetyltransferase, GNAT family (ArgA) (PDB:2R98)
Ruegeria pomeroyi DSS-3 4040 5.29275E-5 3.2405E-4 2.98565E-5 6.84589E-5 SPOA0140 K00820 UDP-N-acetyl-D-glucosamine biosynthesis, eukaryotes, glucose => UDP-GlcNAc Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains (GlmS) (PDB:2J6H)
Ruegeria pomeroyi DSS-3 4041 1.16821E-5 1.89372E-5 4.7343E-6 SPOA0141 nan Uncharacterized conserved protein, DUF2384 family
Ruegeria pomeroyi DSS-3 4042 3.23046E-6 SPOA0142 nan Uncharacterized protein, contains RES domain (RES)
Ruegeria pomeroyi DSS-3 4043 1.75894E-5 1.61576E-5 1.5635E-5 2.86641E-5 SPOA0143 K13641 nan DNA-binding transcriptional regulator, IclR family (IclR) (PDB:1MKM)
Ruegeria pomeroyi DSS-3 4044 3.21157E-6 1.38682E-6 1.38682E-6 SPOA0144 K00830 Photorespiration Archaeal aspartate aminotransferase or a related aminotransferase, includes purine catabolism protein PucG (PucG) (PDB:3NNK)
Ruegeria pomeroyi DSS-3 4045 4.33107E-6 3.0375E-5 6.35222E-6 2.1944E-5 SPOA0145 K01754 Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine Threonine deaminase (IlvA) (PDB:3IAU)
Ruegeria pomeroyi DSS-3 4046 2.27051E-5 1.50781E-5 5.67627E-6 9.22394E-6 SPOA0146 K18425 nan D-serine deaminase, pyridoxal phosphate-dependent (Dsd1) (PDB:3ANU)
Ruegeria pomeroyi DSS-3 4047 1.88075E-6 1.36442E-5 7.523E-6 1.88075E-6 SPOA0147 K19244 nan Ornithine cyclodeaminase/archaeal alanine dehydrogenase, mu-crystallin family (OCDMu) (PDB:2I99)
Ruegeria pomeroyi DSS-3 4048 SPOA0148 nan Predicted arabinose efflux permease AraJ, MFS family (AraJ) (PDB:4LDS)
Ruegeria pomeroyi DSS-3 4049 SPOA0149 nan DNA-binding transcriptional regulator, MocR family, contains an aminotransferase domain (ARO8) (PDB:2R2N)
Ruegeria pomeroyi DSS-3 4050 SPOA0150 nan AraC-type DNA-binding domain and AraC-containing proteins (AraC) (PDB:1BL0)
Ruegeria pomeroyi DSS-3 4051 SPOA0151 nan Cytochrome c553 (CytC553) (PDB:6Q2U)
Ruegeria pomeroyi DSS-3 4052 SPOA0152 K00428 nan Cytochrome c peroxidase (MauG) (PDB:1EB7)
Ruegeria pomeroyi DSS-3 4053 SPOA0153 nan
Ruegeria pomeroyi DSS-3 4054 SPOA0154 nan Nitrous oxide reductase accessory protein NosD, contains tandem CASH domains (NosD) (PDB:2KZW)!!!Cytochrome c551/c552 (CytC552) (PDB:2ZXY)
Ruegeria pomeroyi DSS-3 4055 SPOA0155 K01406 nan Ca2+-binding protein, RTX toxin-related (PDB:1AF0) (PUBMED:15135544)
Ruegeria pomeroyi DSS-3 4056 SPOA0156 nan
Ruegeria pomeroyi DSS-3 4057 SPOA0157 nan Uncharacterized membrane protein YadS, UPF0324 family (YeiH)
Ruegeria pomeroyi DSS-3 4058 4.69799E-4 6.11715E-4 2.5326E-4 3.21839E-4 SPOA0158 K17950 nan 1-aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase, PLP-dependent ACC family (Acd) (PDB:4D97)
Ruegeria pomeroyi DSS-3 4059 SPOA0159 K21645 nan DNA-binding transcriptional regulator, LysR family (LysR) (PDB:2FYI)
Ruegeria pomeroyi DSS-3 4060 SPOA0160 K11690 nan TRAP-type mannitol/chloroaromatic compound transport system, large permease component (FcbT3)
Ruegeria pomeroyi DSS-3 4061 SPOA0161 nan TRAP-type mannitol/chloroaromatic compound transport system, small permease component (FcbT2)
Ruegeria pomeroyi DSS-3 4062 SPOA0162 K21395 nan TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component (FcbT1) (PDB:2HZK)
Ruegeria pomeroyi DSS-3 4063 0.0 SPOA0163 K00054 C5 isoprenoid biosynthesis, mevalonate pathway, archaea Hydroxymethylglutaryl-CoA reductase (HMG1) (PDB:1DQ8)
Ruegeria pomeroyi DSS-3 4064 0.0 1.19128E-6 SPOA0164 nan DNA-binding transcriptional regulator, MocR family, contains an aminotransferase domain (ARO8) (PDB:2R2N)
Ruegeria pomeroyi DSS-3 4065 1.76585E-6 SPOA0165 nan DNA-binding transcriptional regulator, LysR family (LysR) (PDB:2FYI)
Ruegeria pomeroyi DSS-3 4066 SPOA0166 K07080 nan TRAP-type uncharacterized transport system, periplasmic component (Imp) (PDB:1US4)
Ruegeria pomeroyi DSS-3 4067 SPOA0167 nan TRAP-type uncharacterized transport system, fused permease components
Ruegeria pomeroyi DSS-3 4068 SPOA0168 nan Glycine/D-amino acid oxidase (deaminating) (DadA) (PDB:3AWI)
Ruegeria pomeroyi DSS-3 4069 2.08549E-5 2.77412E-5 SPOA0169 nan N-hydroxylaminopurine reductase YiiM, contains MOSC domain (YiiM) (PDB:1O65) (PUBMED:18312271;29459651)
Ruegeria pomeroyi DSS-3 4070 3.05099E-6 3.05099E-6 SPOA0170 nan DNA-binding transcriptional regulator, MarR family (MarR) (PDB:1JGS)
Ruegeria pomeroyi DSS-3 4071 SPOA0171 nan
Ruegeria pomeroyi DSS-3 4072 SPOA0172 nan
Ruegeria pomeroyi DSS-3 4073 SPOA0173 nan Peroxiredoxin (Bcp) (PDB:5IPH)
Ruegeria pomeroyi DSS-3 4074 3.54309E-6 SPOA0174 nan N-hydroxylaminopurine reductase YiiM, contains MOSC domain (YiiM) (PDB:1O65) (PUBMED:18312271;29459651)
Ruegeria pomeroyi DSS-3 4075 SPOA0175 nan Flavodoxin/ferredoxin--NADP reductase (Fpr) (PDB:3OZU)
Ruegeria pomeroyi DSS-3 4076 SPOA0176 nan
Ruegeria pomeroyi DSS-3 4077 SPOA0177 K04761 nan DNA-binding transcriptional regulator, LysR family (LysR) (PDB:2FYI)
Ruegeria pomeroyi DSS-3 4078 SPOA0180 K08738 nan Cytochrome c2 (Cyc7) (PDB:1YEA)
Ruegeria pomeroyi DSS-3 4079 SPOA0181 K02598 nan Formate/nitrite transporter FocA, FNT family (FocA) (PDB:3KCU)
Ruegeria pomeroyi DSS-3 4080 SPOA0182 nan
Ruegeria pomeroyi DSS-3 4081 SPOA0183 K07152 nan Cytochrome oxidase Cu insertion factor, SCO1/SenC/PrrC family (Sco1) (PDB:1ON4)
Ruegeria pomeroyi DSS-3 4082 SPOA0184 nan Heme/copper-type cytochrome/quinol oxidase, subunit 1 (CyoB) (PDB:1AR1)
Ruegeria pomeroyi DSS-3 4083 SPOA0185 nan Heme/copper-type cytochrome/quinol oxidase, subunit 2 (CyoA) (PDB:1CYW)
Ruegeria pomeroyi DSS-3 4084 3.43237E-6 2.43E-6 3.43237E-6 SPOA0186 K13771 nan DNA-binding transcriptional regulator, IscR family (IscR) (PDB:1XD7)
Ruegeria pomeroyi DSS-3 4085 SPOA0187 K00406 Cytochrome c oxidase, cbb3-type Cytochrome c, mono- and diheme variants (CccA) (PDB:1A2S)!!!Cytochrome c553 (CytC553) (PDB:6Q2U)
Ruegeria pomeroyi DSS-3 4086 SPOA0188 K00407 Cytochrome c oxidase, cbb3-type Cbb3-type cytochrome oxidase, subunit 3 (CcoQ)
Ruegeria pomeroyi DSS-3 4087 SPOA0189 K00405 Cytochrome c oxidase, cbb3-type Cbb3-type cytochrome oxidase, cytochrome c subunit FixO (CcoO) (PDB:3MK7)
Ruegeria pomeroyi DSS-3 4088 SPOA0190 K00404 Cytochrome c oxidase, cbb3-type Cbb3-type cytochrome oxidase, subunit 1 (CcoN) (PDB:3MK7)
Ruegeria pomeroyi DSS-3 4089 SPOA0191 nan Uncharacterized membrane protein
Ruegeria pomeroyi DSS-3 4090 SPOA0192 K06886 nan Truncated hemoglobin YjbI (YjbI) (PDB:1DLW)
Ruegeria pomeroyi DSS-3 4091 SPOA0193 K02197 nan Cytochrome c biogenesis protein CcmE (CcmE) (PDB:1J6Q)
Ruegeria pomeroyi DSS-3 4092 SPOA0194 K00643 Heme biosynthesis, animals and fungi, glycine => heme 7-keto-8-aminopelargonate synthetase or related enzyme (BioF) (PDB:1BS0)
Ruegeria pomeroyi DSS-3 4093 SPOA0195 nan
Ruegeria pomeroyi DSS-3 4094 SPOA0196 K02200 nan Cytochrome c-type biogenesis protein CcmH/NrfF (NrfF) (PDB:2HL7)
Ruegeria pomeroyi DSS-3 4095 SPOA0197 K02199 nan Thiol-disulfide isomerase or thioredoxin (TrxA) (PDB:1XFL)
Ruegeria pomeroyi DSS-3 4096 SPOA0198 K02198 nan Cytochrome c biogenesis protein CcmF (CcmF)
Ruegeria pomeroyi DSS-3 4097 SPOA0199 K00375 nan DNA-binding transcriptional regulator, MocR family, contains an aminotransferase domain (ARO8) (PDB:2R2N)
Ruegeria pomeroyi DSS-3 4098 SPOA0200 nan
Ruegeria pomeroyi DSS-3 4099 SPOA0201 K10535 Nitrification, ammonia => nitrite Cytochrome c, mono- and diheme variants (CccA) (PDB:1A2S)
Ruegeria pomeroyi DSS-3 4100 0.001038113 0.00103056 9.01347E-4 9.27981E-4 SPOA0202 K00013 Histidine biosynthesis, PRPP => histidine Histidinol dehydrogenase (HisD) (PDB:1K75)
Ruegeria pomeroyi DSS-3 4101 1.06188E-4 4.66624E-4 1.13767E-4 1.02773E-4 SPOA0203 nan
Ruegeria pomeroyi DSS-3 4102 SPOA0204 nan
Ruegeria pomeroyi DSS-3 4103 8.37781E-4 0.005063753 0.001535236 8.61434E-4 SPOA0205 nan Serine protease, subtilisin family (AprE) (PDB:1SCJ)
Ruegeria pomeroyi DSS-3 4104 4.83184E-5 1.40774E-4 5.49965E-5 6.04961E-5 SPOA0206 K10914 nan cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases (Crp) (PDB:1FT9)
Ruegeria pomeroyi DSS-3 4105 2.30187E-4 2.77306E-4 3.89365E-4 3.35791E-4 SPOA0207 nan Adenylate cyclase, class 3 (AcyC) (PDB:1AB8)!!!Predicted ATPase
Ruegeria pomeroyi DSS-3 4106 0.003204064 0.006610075 0.0046018 0.003622708 SPOA0208 nan FAD/FMN-containing lactate dehydrogenase/glycolate oxidase (GlcD) (PDB:1AHU)
Ruegeria pomeroyi DSS-3 4107 1.26831E-6 2.92053E-6 3.80494E-6 5.91879E-6 SPOA0209 K09471 GABA biosynthesis, prokaryotes, putrescine => GABA Glycine/D-amino acid oxidase (deaminating) (DadA) (PDB:3AWI)
Ruegeria pomeroyi DSS-3 4108 SPOA0210 nan Permease of the drug/metabolite transporter (DMT) superfamily (RhaT) (PDB:5I20)
Ruegeria pomeroyi DSS-3 4109 8.82609E-6 9.80677E-7 SPOA0211 K03324 nan Na+/phosphate symporter (NptA)
Ruegeria pomeroyi DSS-3 4110 SPOA0212 nan
Ruegeria pomeroyi DSS-3 4111 SPOA0213 K02164 nan Heme/copper-type cytochrome/quinol oxidase, subunit 3 (CyoC) (PDB:1QLE)
Ruegeria pomeroyi DSS-3 4112 SPOA0214 K02448 nan Nitric oxide reductase activation protein (NorD)
Ruegeria pomeroyi DSS-3 4113 SPOA0215 K04748 nan MoxR-like ATPase (MoxR) (PDB:2R44)
Ruegeria pomeroyi DSS-3 4114 SPOA0216 K04561 Denitrification, nitrate => nitrogen Nitric oxide reductase large subunit (NorB) (PDB:3WFC)
Ruegeria pomeroyi DSS-3 4115 SPOA0217 K02305 Denitrification, nitrate => nitrogen Cytochrome c, mono- and diheme variants (CccA) (PDB:1A2S)
Ruegeria pomeroyi DSS-3 4116 SPOA0218 K16074 nan Mg2+ and Co2+ transporter CorA (CorA) (PDB:2BBH)
Ruegeria pomeroyi DSS-3 4117 SPOA0219 K07234 nan Nitric oxide response protein NnrS (NnrS) (PUBMED:26452555;29934335;31481951)
Ruegeria pomeroyi DSS-3 4118 SPOA0220 K15864 Denitrification, nitrate => nitrogen Cytochrome c, mono- and diheme variants (CccA) (PDB:1A2S)
Ruegeria pomeroyi DSS-3 4119 SPOA0221 K02303 Siroheme biosynthesis, glutamyl-tRNA => siroheme Uroporphyrinogen-III methylase (siroheme synthase) (CysG) (PDB:1PJQ)
Ruegeria pomeroyi DSS-3 4120 SPOA0222 K19344 nan Cytochrome c, mono- and diheme variants (CccA) (PDB:1A2S)
Ruegeria pomeroyi DSS-3 4121 SPOA0223 K19345 nan DNA-binding beta-propeller fold protein YncE (YncE) (PDB:3VGZ) (PUBMED:22120742;28628661)
Ruegeria pomeroyi DSS-3 4122 SPOA0224 K22225 Heme biosynthesis, archaea, siroheme => heme DNA-binding transcriptional regulator, Lrp family (Lrp) (PDB:1I1G)
Ruegeria pomeroyi DSS-3 4123 SPOA0225 K22225 Heme biosynthesis, archaea, siroheme => heme DNA-binding transcriptional regulator, Lrp family (Lrp) (PDB:1I1G)
Ruegeria pomeroyi DSS-3 4124 SPOA0226 K22225 Heme biosynthesis, archaea, siroheme => heme DNA-binding transcriptional regulator, Lrp family (Lrp) (PDB:1I1G)
Ruegeria pomeroyi DSS-3 4125 SPOA0227 K24868 nan Radical SAM superfamily maturase, SkfB/NifB/PqqE family (SkfB) (PDB:6Q2P) (PUBMED:23282011)
Ruegeria pomeroyi DSS-3 4126 SPOA0228 K24867 nan Periplasmic component TolB of the Tol biopolymer transport system (TolB) (PDB:1C5K)!!!Cytochrome c, mono- and diheme variants (CccA) (PDB:1A2S)
Ruegeria pomeroyi DSS-3 4127 SPOA0229 nan
Ruegeria pomeroyi DSS-3 4128 SPOA0230 K21699 nan DNA-binding transcriptional regulator, LysR family (LysR) (PDB:2FYI)
Ruegeria pomeroyi DSS-3 4129 8.77282E-5 1.14658E-5 8.71433E-5 4.38641E-5 SPOA0231 K02002 nan ABC-type proline/glycine betaine transport system, periplasmic component (ProX) (PDB:1R9L)
Ruegeria pomeroyi DSS-3 4130 SPOA0232 K02000 nan ABC-type proline/glycine betaine transport system, ATPase component (ProV)
Ruegeria pomeroyi DSS-3 4131 1.04805E-6 SPOA0233 K02001 nan ABC-type proline/glycine betaine transport system, permease component (ProW)
Ruegeria pomeroyi DSS-3 4132 SPOA0234 K01480 Polyamine biosynthesis, arginine => agmatine => putrescine => spermidine Arginase/agmatinase family enzyme (SpeB) (PDB:1CEV)
Ruegeria pomeroyi DSS-3 4133 1.08831E-5 4.18581E-5 SPOA0235 K18459 Polyamine biosynthesis, arginine => agmatine => putrescine => spermidine Arginase/agmatinase family enzyme (SpeB) (PDB:1CEV)
Ruegeria pomeroyi DSS-3 4134 9.58427E-7 2.39607E-6 SPOA0236 K10125 nan Signal transduction histidine kinase regulating C4-dicarboxylate transport system (PDB:4GCZ)
Ruegeria pomeroyi DSS-3 4135 1.04664E-5 8.00374E-6 9.02986E-6 SPOA0237 nan DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains (AtoC) (PDB:1ZY2)
Ruegeria pomeroyi DSS-3 4136 6.92585E-5 0.00318426 8.79989E-5 SPOA0238 K21395 nan TRAP-type C4-dicarboxylate transport system, periplasmic component (DctP) (PDB:2CEX)
Ruegeria pomeroyi DSS-3 4137 SPOA0239 K21394 nan TRAP-type mannitol/chloroaromatic compound transport system, small permease component (FcbT2)
Ruegeria pomeroyi DSS-3 4138 SPOA0240 K11690 nan TRAP-type C4-dicarboxylate transport system, large permease component (DctQ)
Ruegeria pomeroyi DSS-3 4139 1.78886E-6 SPOA0241 K01053 Ascorbate biosynthesis, animals, glucose-1P => ascorbate Sugar lactone lactonase YvrE (YvrE) (PDB:1E1A)
Ruegeria pomeroyi DSS-3 4140 2.69828E-5 4.26381E-5 2.64537E-5 6.34889E-6 SPOA0242 K06145 nan DNA-binding transcriptional regulator, LacI/PurR family (PurR) (PDB:1BDH)
Ruegeria pomeroyi DSS-3 4141 1.09836E-6 8.52763E-6 4.39343E-6 1.09836E-6 SPOA0243 K13877 Hydroxyproline degradation, trans-4-hydroxy-L-proline => 2-oxoglutarate Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenase (AdhE) (PDB:1A4S)
Ruegeria pomeroyi DSS-3 4142 1.62586E-5 1.16821E-5 1.62586E-5 SPOA0244 K13876 nan 4-hydroxy-tetrahydrodipicolinate synthase/N-acetylneuraminate lyase (DapA) (PDB:2R91) (PUBMED:27574185)
Ruegeria pomeroyi DSS-3 4143 SPOA0245 K25260 nan L-alanine-DL-glutamate epimerase or related enzyme of enolase superfamily (RspA) (PDB:1BKH)
Ruegeria pomeroyi DSS-3 4144 SPOA0246 K00097 Pyridoxal-P biosynthesis, erythrose-4P => pyridoxal-P 4-hydroxy-L-threonine phosphate dehydrogenase PdxA (PdxA) (PDB:1PS6)
Ruegeria pomeroyi DSS-3 4145 SPOA0247 nan DNA-binding beta-propeller fold protein YncE (YncE) (PDB:3VGZ) (PUBMED:22120742;28628661)
Ruegeria pomeroyi DSS-3 4146 SPOA0248 K11477 nan Heme-binding protein HbpS, GlcG/HbpS family (GlcG) (PDB:2A2L) (PUBMED:19244623;25342754)
Ruegeria pomeroyi DSS-3 4147 1.77571E-5 SPOA0249 K21395 nan TRAP-type C4-dicarboxylate transport system, periplasmic component (DctP) (PDB:2CEX)
Ruegeria pomeroyi DSS-3 4148 SPOA0250 K21393 nan TRAP-type C4-dicarboxylate transport system, large permease component (DctQ)
Ruegeria pomeroyi DSS-3 4149 SPOA0251 K21394 nan TRAP-type C4-dicarboxylate transport system, small permease component YiaM (DctM)
Ruegeria pomeroyi DSS-3 4150 2.33522E-5 1.36442E-5 1.61049E-5 2.41574E-5 SPOA0252 nan DNA-binding transcriptional regulator, LacI/PurR family (PurR) (PDB:1BDH)
Ruegeria pomeroyi DSS-3 4151 SPOA0253 K10910 nan ABC-type sugar transport system, periplasmic component, contains N-terminal xre family HTH domain (RbsB) (PDB:1BA2)
Ruegeria pomeroyi DSS-3 4152 SPOA0254 nan Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component (AraH)
Ruegeria pomeroyi DSS-3 4153 SPOA0255 K10545 nan ABC-type sugar transport system, ATPase component (MglA)
Ruegeria pomeroyi DSS-3 4154 6.3124E-6 8.83654E-5 4.36608E-5 6.3124E-6 SPOA0256 nan ABC-type sugar transport system, periplasmic component, contains N-terminal xre family HTH domain (RbsB) (PDB:1BA2)
Ruegeria pomeroyi DSS-3 4155 SPOA0257 nan Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component (AraH)
Ruegeria pomeroyi DSS-3 4156 SPOA0258 nan ABC-type sugar transport system, ATPase component (MglA)
Ruegeria pomeroyi DSS-3 4157 7.91323E-6 1.58265E-6 SPOA0259 nan DNA-binding transcriptional regulator, LacI/PurR family (PurR) (PDB:1BDH)
Ruegeria pomeroyi DSS-3 4158 9.84584E-6 9.71998E-6 1.09398E-5 4.37593E-6 SPOA0260 K13877 Hydroxyproline degradation, trans-4-hydroxy-L-proline => 2-oxoglutarate Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenase (AdhE) (PDB:1A4S)
Ruegeria pomeroyi DSS-3 4159 1.9683E-4 1.86501E-4 1.7901E-4 3.96899E-4 SPOA0261 nan DNA-binding transcriptional regulator, GntR family (GntR) (PDB:3FMS)
Ruegeria pomeroyi DSS-3 4160 SPOA0262 K21060 Hydroxyproline degradation, trans-4-hydroxy-L-proline => 2-oxoglutarate Glycine/D-amino acid oxidase (deaminating) (DadA) (PDB:3AWI)
Ruegeria pomeroyi DSS-3 4161 SPOA0263 K11690 nan TRAP-type mannitol/chloroaromatic compound transport system, large permease component (FcbT3)
Ruegeria pomeroyi DSS-3 4162 SPOA0264 K21394 nan TRAP-type mannitol/chloroaromatic compound transport system, small permease component (FcbT2)
Ruegeria pomeroyi DSS-3 4163 3.41105E-6 SPOA0265 K21395 nan TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component (FcbT1) (PDB:2HZK)
Ruegeria pomeroyi DSS-3 4164 SPOA0266 K12658 Hydroxyproline degradation, trans-4-hydroxy-L-proline => 2-oxoglutarate Proline racemase/hydroxyproline epimerase (PrdF) (PDB:1TM0) (PUBMED:17849014)
Ruegeria pomeroyi DSS-3 4165 SPOA0267 K21062 Hydroxyproline degradation, trans-4-hydroxy-L-proline => 2-oxoglutarate 4-hydroxy-tetrahydrodipicolinate synthase/N-acetylneuraminate lyase (DapA) (PDB:2R91) (PUBMED:27574185)
Ruegeria pomeroyi DSS-3 4166 2.034E-6 8.13598E-6 1.8306E-5 SPOA0268 nan DNA-binding transcriptional regulator, IclR family (IclR) (PDB:1MKM)
Ruegeria pomeroyi DSS-3 4167 1.07065E-5 0.00102104 2.14129E-5 3.14896E-6 SPOA0269 K17285 nan DNA-binding beta-propeller fold protein YncE (YncE) (PDB:3VGZ) (PUBMED:22120742;28628661)
Ruegeria pomeroyi DSS-3 4168 SPOA0270 K07152 nan Cytochrome oxidase Cu insertion factor, SCO1/SenC/PrrC family (Sco1) (PDB:1ON4)
Ruegeria pomeroyi DSS-3 4169 SPOA0271 K00428 nan Cytochrome c peroxidase (MauG) (PDB:1EB7)
Ruegeria pomeroyi DSS-3 4170 SPOA0272 K00121 nan Zn-dependent alcohol/formaldehyde dehydrogenase (FrmA) (PDB:1A71)
Ruegeria pomeroyi DSS-3 4171 2.18008E-5 1.56271E-5 SPOA0272a nan
Ruegeria pomeroyi DSS-3 4172 SPOA0273 nan Mannose-6-phosphate isomerase, cupin superfamily (ManC) (PDB:1IPJ)!!!Transcriptional regulator, contains XRE-family HTH domain (HipB) (PDB:1ADR)
Ruegeria pomeroyi DSS-3 4173 SPOA0274 K00823 GABA (gamma-Aminobutyrate) shunt Acetylornithine aminotransferase/4-aminobutyrate aminotransferase (ArgD) (PDB:1SF2)
Ruegeria pomeroyi DSS-3 4174 SPOA0275 K00135 GABA (gamma-Aminobutyrate) shunt Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenase (AdhE) (PDB:1A4S)
Ruegeria pomeroyi DSS-3 4175 4.38642E-6 3.94777E-5 1.57911E-5 SPOA0276 K00847 nan Sugar or nucleoside kinase, ribokinase family (RbsK) (PDB:2QCV)
Ruegeria pomeroyi DSS-3 4176 SPOA0277 nan 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase MenH and related esterases, alpha/beta hydrolase fold (MenH) (PDB:4MYS)
Ruegeria pomeroyi DSS-3 4177 SPOA0278 K11690 nan TRAP-type C4-dicarboxylate transport system, large permease component (DctQ)
Ruegeria pomeroyi DSS-3 4178 SPOA0279 K21394 nan TRAP-type C4-dicarboxylate transport system, small permease component YiaM (DctM)
Ruegeria pomeroyi DSS-3 4179 2.07394E-5 1.134E-5 2.40577E-5 1.65915E-6 SPOA0280 K21395 nan TRAP-type C4-dicarboxylate transport system, periplasmic component (DctP) (PDB:2CEX)
Ruegeria pomeroyi DSS-3 4180 7.47182E-6 7.47182E-6 SPOA0281 K21645 nan DNA-binding transcriptional regulator, LysR family (LysR) (PDB:2FYI)
Ruegeria pomeroyi DSS-3 4181 0.001151101 0.001406157 0.001282868 0.001097995 SPOA0282 K18661 nan O-succinylbenzoic acid-CoA ligase MenE or related acyl-CoA synthetase (AMP-forming) (MenE/FadK) (PDB:5EY9) (PUBMED:25151136;27455459)
Ruegeria pomeroyi DSS-3 4182 SPOA0283 K00108 Betaine biosynthesis, choline => betaine Choline dehydrogenase or related flavoprotein (BetA) (PDB:1B4V)
Ruegeria pomeroyi DSS-3 4183 SPOA0284 K03566 nan DNA-binding transcriptional regulator, LysR family (LysR) (PDB:2FYI)
Ruegeria pomeroyi DSS-3 4184 1.23092E-4 2.349E-5 4.2784E-5 1.55005E-4 SPOA0285 K08299 beta-Oxidation Enoyl-CoA hydratase/carnithine racemase (CaiD) (PDB:1DCI)
Ruegeria pomeroyi DSS-3 4185 1.36612E-5 1.36612E-5 1.77595E-5 SPOA0286 nan Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH domain (GlxA)
Ruegeria pomeroyi DSS-3 4186 SPOA0287 K24012 nan Acyl-CoA synthetase (NDP forming) (PatZN) (PDB:4YAK) (PUBMED:26251518)
Ruegeria pomeroyi DSS-3 4187 SPOA0288 K00249 beta-Oxidation Acyl-CoA dehydrogenase related to the alkylation response protein AidB (CaiA) (PDB:1BUC)
Ruegeria pomeroyi DSS-3 4188 SPOA0289 K17736 nan Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH domain (GlxA)
Ruegeria pomeroyi DSS-3 4189 1.93373E-5 9.71998E-6 2.32047E-5 2.32047E-5 SPOA0290 nan
Ruegeria pomeroyi DSS-3 4190 1.39447E-4 1.6038E-4 7.63228E-5 2.08309E-4 SPOA0291 K00826 Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase (IlvE) (PDB:1A3G)
Ruegeria pomeroyi DSS-3 4191 1.32906E-4 1.1178E-4 1.27891E-4 1.92255E-4 SPOA0292 K01613 Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE Phosphatidylserine decarboxylase (Psd) (PDB:6L06)
Ruegeria pomeroyi DSS-3 4192 SPOA0293 K17103 Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE Phosphatidylserine synthase (PssA)
Ruegeria pomeroyi DSS-3 4193 SPOA0294 K00570 Phosphatidylcholine (PC) biosynthesis, PE => PC Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG (UbiE) (PDB:4OBW)
Ruegeria pomeroyi DSS-3 4194 SPOA0295 K16841 nan Asp/Glu/hydantoin racemase (Dcg1)
Ruegeria pomeroyi DSS-3 4195 SPOA0296 K01996 nan ABC-type branched-chain amino acid transport system, ATPase component LivF (LivF) (PDB:1JI0) (PUBMED:26527648;32250026)
Ruegeria pomeroyi DSS-3 4196 SPOA0297 K01995 nan ABC-type branched-chain amino acid transport system, ATPase component LivG (LivG) (PDB:1G9X) (PUBMED:29514851)
Ruegeria pomeroyi DSS-3 4197 SPOA0298 K01998 nan ABC-type branched-chain amino acid transport system, permease component (LivM)
Ruegeria pomeroyi DSS-3 4198 SPOA0299 K01997 nan Branched-chain amino acid ABC-type transport system, permease component (LivH)
Ruegeria pomeroyi DSS-3 4199 1.39033E-6 2.43E-6 SPOA0300 K01999 nan ABC-type branched-chain amino acid transport system, periplasmic component (LivK) (PDB:1USG)
Ruegeria pomeroyi DSS-3 4200 3.67651E-5 4.04999E-5 8.88489E-5 4.36586E-5 SPOA0301 K05799 nan DNA-binding transcriptional regulator, GntR family (GntR) (PDB:3FMS)
Ruegeria pomeroyi DSS-3 4201 SPOA0302 nan Site-specific recombinase XerD (XerD) (PDB:1A0P)
Ruegeria pomeroyi DSS-3 4202 2.60296E-4 9.97918E-4 4.94512E-4 6.08861E-4 SPOA0303 K03497 nan Chromosome segregation protein Spo0J, contains ParB-like nuclease domain (Spo0J) (PDB:1R71)
Ruegeria pomeroyi DSS-3 4203 1.02261E-4 4.15529E-4 1.15307E-4 2.71854E-4 SPOA0304 K03496 nan ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ (ParA) (PDB:6NOO)
Ruegeria pomeroyi DSS-3 4204 SPOA0305 nan
Ruegeria pomeroyi DSS-3 4205 3.28072E-4 6.23118E-4 4.61837E-4 3.68991E-4 SPOA0306 K06959 nan Transcriptional accessory protein Tex/SPT6 (Tex) (PDB:2OCE)
Ruegeria pomeroyi DSS-3 4206 8.84188E-6 3.21157E-6 3.92972E-6 1.17892E-5 SPOA0309 K01652 Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine Acetolactate synthase large subunit or other thiamine pyrophosphate-requiring enzyme (IlvB) (PDB:1BFD)
Ruegeria pomeroyi DSS-3 4207 SPOA0310 K00315 nan Glycine cleavage system protein T (aminomethyltransferase) (GcvT) (PDB:2GAH) (PUBMED:25433025;25505271)!!!Glycine/D-amino acid oxidase (deaminating) (DadA) (PDB:3AWI)
Ruegeria pomeroyi DSS-3 4208 6.87333E-7 SPOA0311 nan Glycine cleavage system protein T (aminomethyltransferase) (GcvT) (PDB:2GAH) (PUBMED:25433025;25505271)!!!Glycine/D-amino acid oxidase (deaminating) (DadA) (PDB:3AWI)
Ruegeria pomeroyi DSS-3 4209 SPOA0312 K01845 Siroheme biosynthesis, glutamyl-tRNA => siroheme Glutamate-1-semialdehyde aminotransferase (HemL) (PDB:2CFB)
Ruegeria pomeroyi DSS-3 4210 SPOA0313 K14083 Methanogenesis, methylamine/dimethylamine/trimethylamine => methane Trimethylamine:corrinoid methyltransferase (MttB2)
Ruegeria pomeroyi DSS-3 4211 SPOA0314 K03566 nan DNA-binding transcriptional regulator, LysR family (LysR) (PDB:2FYI)
Ruegeria pomeroyi DSS-3 4212 0.035989847 0.030304467 0.047708023 0.039114404 SPOA0315 nan Monomeric isocitrate dehydrogenase (IcdM) (PDB:1ITW)
Ruegeria pomeroyi DSS-3 4213 0.001675444 8.08378E-4 0.001109986 0.001175103 SPOA0316 nan Predicted amidohydrolase YtcJ (YtcJ) (PDB:3ICJ)
Ruegeria pomeroyi DSS-3 4214 SPOA0317 K03719 nan DNA-binding transcriptional regulator, Lrp family (Lrp) (PDB:1I1G)
Ruegeria pomeroyi DSS-3 4215 SPOA0318 K01761 nan Cystathionine beta-lyase/cystathionine gamma-synthase (MetC) (PDB:1CL1)
Ruegeria pomeroyi DSS-3 4216 6.89923E-7 2.43E-6 6.89923E-7 SPOA0319 K00163 Pyruvate oxidation, pyruvate => acetyl-CoA Pyruvate dehydrogenase complex, dehydrogenase (E1) component (AceE) (PDB:1L8A)
Ruegeria pomeroyi DSS-3 4217 SPOA0320 K01826 Homoprotocatechuate degradation, homoprotocatechuate => 2-oxohept-3-enedioate 5-carboxymethyl-2-hydroxymuconate isomerase (HpaF) (PDB:1OTG)
Ruegeria pomeroyi DSS-3 4218 SPOA0321 K08234 nan Catechol-2,3-dioxygenase (CatE)
Ruegeria pomeroyi DSS-3 4219 6.56948E-5 4.04999E-5 7.38145E-5 8.36562E-5 SPOA0322 K07444 nan 23S rRNA G2445 N2-methylase RlmL (RlmL) (PDB:3V97) (PUBMED:22362734)
Ruegeria pomeroyi DSS-3 4220 6.10199E-5 2.0655E-5 8.9183E-5 7.62749E-5 SPOA0323 K21563 nan cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases (Crp) (PDB:1FT9)
Ruegeria pomeroyi DSS-3 4221 1.46839E-5 3.0375E-5 6.02041E-5 2.83889E-5 SPOA0324 nan
Ruegeria pomeroyi DSS-3 4222 3.83505E-6 9.71998E-6 1.38062E-5 1.53402E-5 SPOA0325 K00459 nan NAD(P)H-dependent flavin oxidoreductase YrpB, nitropropane dioxygenase family (YrpB)
Ruegeria pomeroyi DSS-3 4223 SPOA0326 K21959 nan DNA-binding transcriptional regulator, LysR family (LysR) (PDB:2FYI)
Ruegeria pomeroyi DSS-3 4224 SPOA0327 K07389 Pertussis pathogenicity signature, T1SS ACP:hemolysin acyltransferase (hemolysin-activating protein) (HlyC) (PUBMED:23319881)
Ruegeria pomeroyi DSS-3 4225 1.0411E-5 SPOA0328 nan
Ruegeria pomeroyi DSS-3 4226 SPOA0329 K01734 nan Methylglyoxal synthase (MgsA) (PDB:1S8A) (PUBMED:9665712)
Ruegeria pomeroyi DSS-3 4227 SPOA0330 K01625 Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate 2-keto-3-deoxy-6-phosphogluconate aldolase (Eda) (PDB:2V81)
Ruegeria pomeroyi DSS-3 4228 SPOA0331 K00874 Semi-phosphorylative Entner-Doudoroff pathway, gluconate => glycerate-3P Sugar or nucleoside kinase, ribokinase family (RbsK) (PDB:2QCV)
Ruegeria pomeroyi DSS-3 4229 SPOA0332 K22186 nan Dihydroxyacid dehydratase/phosphogluconate dehydratase (IlvD) (PDB:2GP4)
Ruegeria pomeroyi DSS-3 4230 SPOA0333 K11690 nan TRAP-type mannitol/chloroaromatic compound transport system, large permease component (FcbT3)
Ruegeria pomeroyi DSS-3 4231 SPOA0334 nan TRAP-type C4-dicarboxylate transport system, small permease component YiaM (DctM)
Ruegeria pomeroyi DSS-3 4232 3.49919E-4 3.56399E-5 SPOA0335 K21395 nan TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component (FcbT1) (PDB:2HZK)
Ruegeria pomeroyi DSS-3 4233 5.74722E-5 2.349E-5 2.8204E-5 4.41685E-5 SPOA0336 K06145 nan DNA-binding transcriptional regulator, LacI/PurR family (PurR) (PDB:1BDH)
Ruegeria pomeroyi DSS-3 4234 7.19763E-7 SPOA0337 nan
Ruegeria pomeroyi DSS-3 4235 1.10175E-5 1.8645E-5 3.39E-6 SPOA0338 nan DNA-binding transcriptional regulator, LysR family (LysR) (PDB:2FYI)
Ruegeria pomeroyi DSS-3 4236 4.131E-5 SPOA0339 K18697 nan Phosphoserine phosphatase (SerB) (PDB:3N28)
Ruegeria pomeroyi DSS-3 4237 7.614E-5 3.17383E-4 SPOA0340 K01821 Catechol meta-cleavage, catechol => acetyl-CoA / 4-methylcatechol => propanoyl-CoA Phenylpyruvate tautomerase PptA, 4-oxalocrotonate tautomerase family (PptA) (PDB:1BJP)
Ruegeria pomeroyi DSS-3 4238 1.0773E-4 6.36115E-6 SPOA0341 nan
Ruegeria pomeroyi DSS-3 4239 8.41653E-6 3.0213E-4 SPOA0342 nan
Ruegeria pomeroyi DSS-3 4240 3.51691E-5 8.47258E-4 1.75846E-5 8.11597E-6 SPOA0343 nan
Ruegeria pomeroyi DSS-3 4241 1.74898E-6 2.187E-5 1.57408E-5 SPOA0344 nan DNA-binding transcriptional regulator, LysR family (LysR) (PDB:2FYI)
Ruegeria pomeroyi DSS-3 4242 9.153E-5 0.003444923 2.46319E-5 6.33711E-4 SPOA0345 K05275 nan Pyridoxal reductase PdxI or related oxidoreductase, aldo/keto reductase family (PdxI) (PDB:1LQA) (PUBMED:32253339)
Ruegeria pomeroyi DSS-3 4243 7.41149E-5 SPOA0346 K01607 nan Uncharacterized conserved protein YurZ, alkylhydroperoxidase/carboxymuconolactone decarboxylase family (YurZ) (PDB:3BEY)
Ruegeria pomeroyi DSS-3 4244 SPOA0347 nan Predicted arabinose efflux permease AraJ, MFS family (AraJ) (PDB:4LDS)
Ruegeria pomeroyi DSS-3 4245 1.21365E-5 9.71998E-6 4.24779E-5 2.12389E-5 SPOA0348 nan Predicted transcription regulator, contains HTH domain, MarR family
Ruegeria pomeroyi DSS-3 4246 SPOA0349 K15270 nan Permease of the drug/metabolite transporter (DMT) superfamily (RhaT) (PDB:5I20)
Ruegeria pomeroyi DSS-3 4247 SPOA0350 nan
Ruegeria pomeroyi DSS-3 4248 SPOA0351 nan
Ruegeria pomeroyi DSS-3 4249 3.04423E-6 4.85999E-6 1.52211E-5 1.21769E-6 SPOA0352 nan Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (BioA) (PDB:1MLY)
Ruegeria pomeroyi DSS-3 4250 1.11622E-6 SPOA0353 K09472 GABA biosynthesis, prokaryotes, putrescine => GABA Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenase (AdhE) (PDB:1A4S)
Ruegeria pomeroyi DSS-3 4251 SPOA0354 nan Acetylornithine aminotransferase/4-aminobutyrate aminotransferase (ArgD) (PDB:1SF2)
Ruegeria pomeroyi DSS-3 4252 SPOA0355 K02204 Threonine biosynthesis, aspartate => homoserine => threonine Ser/Thr protein kinase RdoA involved in Cpx stress response, MazF antagonist (SrkA) (PDB:1ZYL)
Ruegeria pomeroyi DSS-3 4253 5.34481E-6 SPOA0356 nan ATP-binding helicase-inhibiting domain, Tm-1/UPF0261 family (Tm-1N) (PDB:3WRV) (PUBMED:25092327)
Ruegeria pomeroyi DSS-3 4254 2.0424E-5 1.377E-5 9.07734E-6 6.808E-6 SPOA0357 nan DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain (OmpR) (PDB:1XHF)
Ruegeria pomeroyi DSS-3 4255 1.20434E-6 1.20434E-6 SPOA0358 K07638 nan Signal transduction histidine kinase (BaeS) (PDB:1JOY)
Ruegeria pomeroyi DSS-3 4256 SPOA0359 nan Cytochrome c2 (Cyc7) (PDB:1YEA)
Ruegeria pomeroyi DSS-3 4257 SPOA0360 nan Multicopper oxidase with three cupredoxin domains (includes cell division protein FtsP and spore coat protein CotA) (SufI) (PDB:2YXV)
Ruegeria pomeroyi DSS-3 4258 SPOA0361 nan Cytochrome c, mono- and diheme variants (CccA) (PDB:1A2S)
Ruegeria pomeroyi DSS-3 4259 SPOA0362 K03673 nan Protein thiol-disulfide isomerase DsbC (DsbG) (PDB:2HI7)
Ruegeria pomeroyi DSS-3 4260 SPOA0363 nan Uncharacterized membrane protein YdjX, related to fungal oxalate transporter, TVP38/TMEM64 family (TVP38) (PUBMED:20889782)
Ruegeria pomeroyi DSS-3 4261 SPOA0364 nan DNA-binding beta-propeller fold protein YncE (YncE) (PDB:3VGZ) (PUBMED:22120742;28628661)
Ruegeria pomeroyi DSS-3 4262 9.71998E-6 6.99591E-7 SPOA0365 K17686 nan Cation-transporting P-type ATPase (ZntA) (PDB:4BBJ)
Ruegeria pomeroyi DSS-3 4263 SPOA0366 nan Serine transporter YbeC, amino acid:H+ symporter family (PotE) (PDB:3LRB)
Ruegeria pomeroyi DSS-3 4264 SPOA0367 nan ABC-type multidrug transport system, ATPase and permease component (MdlB) (PDB:2HYD)
Ruegeria pomeroyi DSS-3 4265 SPOA0368 nan Uncharacterized copper-binding protein, cupredoxin-like subfamily
Ruegeria pomeroyi DSS-3 4266 SPOA0369 K07233 nan Uncharacterized conserved protein involved in copper resistance (PcoB)
Ruegeria pomeroyi DSS-3 4267 SPOA0370 nan Multicopper oxidase with three cupredoxin domains (includes cell division protein FtsP and spore coat protein CotA) (SufI) (PDB:2YXV)
Ruegeria pomeroyi DSS-3 4268 SPOA0371 nan
Ruegeria pomeroyi DSS-3 4269 SPOA0372 K21394 nan TRAP-type C4-dicarboxylate transport system, small permease component YiaM (DctM)
Ruegeria pomeroyi DSS-3 4270 SPOA0373 K11690 nan TRAP-type C4-dicarboxylate transport system, large permease component (DctQ)
Ruegeria pomeroyi DSS-3 4271 SPOA0374 K21395 nan TRAP-type C4-dicarboxylate transport system, periplasmic component (DctP) (PDB:2CEX)
Ruegeria pomeroyi DSS-3 4272 SPOA0375 K00375 nan DNA-binding transcriptional regulator, MocR family, contains an aminotransferase domain (ARO8) (PDB:2R2N)
Ruegeria pomeroyi DSS-3 4273 SPOA0376 K21159 nan 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase MenH and related esterases, alpha/beta hydrolase fold (MenH) (PDB:4MYS)
Ruegeria pomeroyi DSS-3 4274 SPOA0377 K09472 GABA biosynthesis, prokaryotes, putrescine => GABA Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenase (AdhE) (PDB:1A4S)
Ruegeria pomeroyi DSS-3 4275 SPOA0378 K18983 nan L-alanine-DL-glutamate epimerase or related enzyme of enolase superfamily (RspA) (PDB:1BKH)
Ruegeria pomeroyi DSS-3 4276 SPOA0379 K00375 nan DNA-binding transcriptional regulator, MocR family, contains an aminotransferase domain (ARO8) (PDB:2R2N)
Ruegeria pomeroyi DSS-3 4277 SPOA0380 K09471 GABA biosynthesis, prokaryotes, putrescine => GABA Glycine/D-amino acid oxidase (deaminating) (DadA) (PDB:3AWI)
Ruegeria pomeroyi DSS-3 4278 6.34889E-6 2.187E-5 5.81981E-6 SPOA0381 K02055 nan Spermidine/putrescine-binding periplasmic protein (PotD) (PDB:1POT)
Ruegeria pomeroyi DSS-3 4279 SPOA0382 K02052 nan ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component (PotA) (PDB:1Z47)
Ruegeria pomeroyi DSS-3 4280 SPOA0383 K02054 nan ABC-type spermidine/putrescine transport system, permease component I (PotB)
Ruegeria pomeroyi DSS-3 4281 SPOA0384 K02053 nan ABC-type spermidine/putrescine transport system, permease component II (PotC)
Ruegeria pomeroyi DSS-3 4282 SPOA0385 K09471 GABA biosynthesis, prokaryotes, putrescine => GABA Glycine/D-amino acid oxidase (deaminating) (DadA) (PDB:3AWI)
Ruegeria pomeroyi DSS-3 4283 SPOA0386 K00108 Betaine biosynthesis, choline => betaine Choline dehydrogenase or related flavoprotein (BetA) (PDB:1B4V)
Ruegeria pomeroyi DSS-3 4284 1.80651E-6 7.22604E-6 SPOA0387 nan DNA-binding transcriptional regulator, LysR family (LysR) (PDB:2FYI)
Ruegeria pomeroyi DSS-3 4285 SPOA0388 K24012 nan Acyl-CoA synthetase (NDP forming) (PatZN) (PDB:4YAK) (PUBMED:26251518)
Ruegeria pomeroyi DSS-3 4286 3.78744E-6 3.78744E-6 SPOA0389 nan DNA-binding transcriptional regulator, MerR family (SoxR) (PDB:2VZ4)
Ruegeria pomeroyi DSS-3 4287 1.1221E-4 2.1789E-4 8.16394E-5 8.05607E-5 SPOA0390 K01130 nan Arylsulfatase A or related enzyme, AlkP superfamily (AslA) (PDB:1E1Z)
Ruegeria pomeroyi DSS-3 4288 SPOA0391 nan cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases (Crp) (PDB:1FT9)
Ruegeria pomeroyi DSS-3 4289 SPOA0392 K03088 nan DNA-directed RNA polymerase specialized sigma subunit, sigma24 family (RpoE) (PDB:2Q1Z)
Ruegeria pomeroyi DSS-3 4290 SPOA0393 nan
Ruegeria pomeroyi DSS-3 4291 SPOA0394 nan
Ruegeria pomeroyi DSS-3 4292 SPOA0395 nan
Ruegeria pomeroyi DSS-3 4293 SPOA0396 nan
Ruegeria pomeroyi DSS-3 4294 2.65304E-6 SPOA0397 nan
Ruegeria pomeroyi DSS-3 4295 SPOA0398 nan
Ruegeria pomeroyi DSS-3 4296 4.09475E-5 SPOA0399 nan
Ruegeria pomeroyi DSS-3 4297 1.04805E-5 6.07499E-5 6.70753E-5 4.19221E-5 SPOA0400 K09022 nan Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family (RidA) (PDB:1J7H) (PUBMED:22094463;32205462)
Ruegeria pomeroyi DSS-3 4298 2.43E-6 4.06799E-6 SPOA0401 K08295 nan Acyl-coenzyme A synthetase/AMP-(fatty) acid ligase (Acs) (PDB:4B2O) (PUBMED:14638756)
Ruegeria pomeroyi DSS-3 4299 SPOA0402 K14673 nan Cupin domain protein related to quercetin dioxygenase (QdoI) (PDB:2H0V)
Ruegeria pomeroyi DSS-3 4300 3.61302E-6 1.134E-5 2.45686E-5 8.18952E-6 SPOA0403 K00249 beta-Oxidation Acyl-CoA dehydrogenase related to the alkylation response protein AidB (CaiA) (PDB:1BUC)
Ruegeria pomeroyi DSS-3 4301 1.74832E-5 2.43E-6 2.6739E-5 4.1137E-6 SPOA0404 nan Enoyl-CoA hydratase/carnithine racemase (CaiD) (PDB:1DCI)
Ruegeria pomeroyi DSS-3 4302 1.41724E-5 SPOA0405 nan DNA-binding transcriptional regulator, MarR family (MarR) (PDB:1JGS)
Ruegeria pomeroyi DSS-3 4303 SPOA0406 nan NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family (FabG) (PDB:6L1H)
Ruegeria pomeroyi DSS-3 4304 1.79705E-6 2.187E-5 3.35449E-6 3.35449E-6 SPOA0407 K09461 nan 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases (UbiH) (PDB:1BF3)!!!2,4-dienoyl-CoA reductase or related NADH-dependent reductase, Old Yellow Enzyme (OYE) family (FadH) (PDB:1BWK)
Ruegeria pomeroyi DSS-3 4305 8.5144E-6 2.43E-6 2.1286E-5 1.91574E-5 SPOA0408 K01432 Tryptophan metabolism, tryptophan => kynurenine => 2-aminomuconate Acetyl esterase/lipase (Aes) (PDB:1EVQ)
Ruegeria pomeroyi DSS-3 4306 3.65461E-5 1.377E-5 1.77792E-5 1.90962E-5 SPOA0409 K00453 Tryptophan metabolism, tryptophan => kynurenine => 2-aminomuconate Tryptophan 2,3-dioxygenase (vermilion) (TDO2) (PDB:2NOX)
Ruegeria pomeroyi DSS-3 4307 SPOA0410 nan
Ruegeria pomeroyi DSS-3 4308 0.003473135 0.003643373 0.002282935 0.003341307 SPOA0412 nan Aldehyde, CO, or xanthine dehydrogenase, FAD-binding subunit (CutB) (PDB:5Y6Q)
Ruegeria pomeroyi DSS-3 4309 8.84213E-4 8.98288E-4 0.001090299 0.001018917 SPOA0413 K03518 nan Aldehyde, CO, or xanthine dehydrogenase, Fe-S subunit, CoxS/CutS family (CutS) (PDB:1FFU) (PUBMED:21175741)
Ruegeria pomeroyi DSS-3 4310 0.00373303 0.007896674 0.005807585 0.004258021 SPOA0414 nan Aldehyde, CO or xanthine dehydrogenase, Mo-binding subunit (CoxL) (PDB:1DGJ) (PUBMED:10095793)
Ruegeria pomeroyi DSS-3 4311 2.71199E-5 9.71998E-6 6.10199E-5 SPOA0415 K03636 nan
Ruegeria pomeroyi DSS-3 4312 2.23243E-6 8.92974E-6 SPOA0416 nan Asp/Glu/hydantoin racemase (Dcg1)
Ruegeria pomeroyi DSS-3 4313 9.59264E-6 1.75865E-5 SPOA0417 nan DNA-binding transcriptional regulator, GntR family (GntR) (PDB:3FMS)
Ruegeria pomeroyi DSS-3 4314 1.21931E-5 2.3733E-4 3.57665E-5 3.54414E-5 SPOA0418 nan Acetolactate synthase large subunit or other thiamine pyrophosphate-requiring enzyme (IlvB) (PDB:1BFD)
Ruegeria pomeroyi DSS-3 4315 SPOA0419 K06998 Pyocyanine biosynthesis, chorismate => pyocyanine Predicted epimerase YddE/YHI9, PhzF superfamily (YHI9) (PDB:1SDJ) (PUBMED:24914732)
Ruegeria pomeroyi DSS-3 4316 SPOA0420 nan
Ruegeria pomeroyi DSS-3 4317 SPOA0421 K07006 nan Predicted flavin-nucleotide-binding protein, pyridoxine 5'-phosphate oxidase superfamily (PDB:5ESC)
Ruegeria pomeroyi DSS-3 4318 SPOA0422 K09958 nan Uncharacterized conserved protein, nuclear transport factor 2 (NTF2) superfamily
Ruegeria pomeroyi DSS-3 4319 2.92117E-5 1.5795E-5 7.74109E-5 3.70014E-5 SPOA0423 K16137 nan DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA (AcrR) (PDB:2QOP)
Ruegeria pomeroyi DSS-3 4320 9.99908E-6 7.12798E-5 1.15374E-5 7.43518E-6 SPOA0424 K01782 beta-Oxidation Enoyl-CoA hydratase/carnithine racemase (CaiD) (PDB:1DCI)!!!3-hydroxyacyl-CoA dehydrogenase (FadB) (PDB:5ZQZ)
Ruegeria pomeroyi DSS-3 4321 5.46447E-6 2.43E-6 2.59562E-5 1.36612E-6 SPOA0425 K00626 Ethylmalonyl pathway Acetyl-CoA acetyltransferase (PaaJ) (PDB:1AFW)
Ruegeria pomeroyi DSS-3 4322 SPOA0426 nan AraC-type DNA-binding domain and AraC-containing proteins (AraC) (PDB:1BL0)
Ruegeria pomeroyi DSS-3 4323 2.49627E-4 4.77899E-5 3.96074E-4 3.19522E-4 SPOA0427 K22042 nan DNA-binding transcriptional regulator, ArsR family (ArsR) (PDB:3F6V)
Ruegeria pomeroyi DSS-3 4324 2.28825E-4 1.5714E-4 1.74984E-4 1.17553E-4 SPOA0428 K01684 D-galactonate degradation, De Ley-Doudoroff pathway, D-galactonate => glycerate-3P L-alanine-DL-glutamate epimerase or related enzyme of enolase superfamily (RspA) (PDB:1BKH)
Ruegeria pomeroyi DSS-3 4325 SPOA0429 K13049 nan Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase or related deacylase (ArgE) (PDB:1CG2)
Ruegeria pomeroyi DSS-3 4326 4.14147E-4 6.23699E-5 1.36792E-4 1.35786E-4 SPOA0430 nan Zn-dependent alcohol/formaldehyde dehydrogenase (FrmA) (PDB:1A71)
Ruegeria pomeroyi DSS-3 4327 SPOA0431 K08151 nan Predicted arabinose efflux permease AraJ, MFS family (AraJ) (PDB:4LDS)
Ruegeria pomeroyi DSS-3 4328 8.81771E-4 0.001147768 0.001610102 0.001114401 SPOA0432 K01857 nan Adenylosuccinate lyase (PurB) (PDB:2HVG)
Ruegeria pomeroyi DSS-3 4329 0.002875658 0.001741497 0.00324564 0.002537345 SPOA0433 nan 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase MenH and related esterases, alpha/beta hydrolase fold (MenH) (PDB:4MYS)
Ruegeria pomeroyi DSS-3 4330 0.003353764 0.003513773 0.004261377 0.003244767 SPOA0434 K01055 Catechol ortho-cleavage, catechol => 3-oxoadipate 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase MenH and related esterases, alpha/beta hydrolase fold (MenH) (PDB:4MYS)
Ruegeria pomeroyi DSS-3 4331 3.56797E-4 2.1222E-4 1.92665E-4 4.16404E-4 SPOA0435 K01754 Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine Threonine deaminase (IlvA) (PDB:3IAU)
Ruegeria pomeroyi DSS-3 4332 3.37495E-4 4.22009E-4 3.46815E-4 3.65454E-4 SPOA0436 nan 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase MenH and related esterases, alpha/beta hydrolase fold (MenH) (PDB:4MYS)
Ruegeria pomeroyi DSS-3 4333 1.3609E-4 1.0854E-4 3.9422E-4 2.32438E-4 SPOA0437 K01560 nan FMN and 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB, HAD superfamily (riboflavin biosynthesis) (YigB) (PDB:4JB3) (PUBMED:24123841)
Ruegeria pomeroyi DSS-3 4334 9.53328E-4 7.03889E-4 0.001955644 0.001151213 SPOA0438 K03775 nan Peptidyl-prolyl cis-trans isomerase, FKBP type (SlpA) (PDB:2M2A)
Ruegeria pomeroyi DSS-3 4335 0.001513896 0.001825736 0.001751943 0.001084437 SPOA0439 K00208 Fatty acid biosynthesis, elongation Enoyl-[acyl-carrier-protein] reductase FabI (FabI) (PDB:1C14)
Ruegeria pomeroyi DSS-3 4336 0.003202425 0.003717083 0.005276504 0.001787181 SPOA0440 nan 3-oxoacyl-(acyl-carrier-protein) synthase (FabB) (PDB:2UV8) (PUBMED:21652641)
Ruegeria pomeroyi DSS-3 4337 SPOA0441 nan
Ruegeria pomeroyi DSS-3 4338 SPOA0442 nan
Ruegeria pomeroyi DSS-3 4339 SPOA0443 nan
Ruegeria pomeroyi DSS-3 4340 4.37069E-4 8.90999E-5 6.07672E-4 5.89257E-4 SPOA0444 K01716 Fatty acid biosynthesis, elongation 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratase (FabA) (PDB:1MKA)
Ruegeria pomeroyi DSS-3 4341 3.95093E-6 SPOA0445 K09826 nan Fe2+ or Zn2+ uptake regulation protein Fur/Zur (Fur) (PDB:1MZB)
Ruegeria pomeroyi DSS-3 4342 SPOA0446 nan DNA-binding transcriptional regulator, LysR family (LysR) (PDB:2FYI)
Alteromonas macleodii MIT1002 0 nan Transposase InsO and inactivated derivatives (Tra5) VTP56522.1
Alteromonas macleodii MIT1002 1 0.012405481 0.010136871 0.008900365 0.052603688 K03772 nan FKBP-type peptidyl-prolyl cis-trans isomerase (FkpA) (PDB:1A7X) VTP56520.1
Alteromonas macleodii MIT1002 2 4.50957E-5 1.0823E-5 2.70575E-6 7.17025E-5 nan WD40 repeat (WD40) (PDB:3UVN) VTP56518.1
Alteromonas macleodii MIT1002 3 4.2896E-5 K03745 nan Uncharacterized coiled-coil protein SlyX (sensitive to lysis X) (SlyX) (PDB:3EFG) VTP56516.1
Alteromonas macleodii MIT1002 4 nan VTP56514.1
Alteromonas macleodii MIT1002 5 nan Uncharacterized conserved protein AsmA involved in outer membrane biogenesis (AsmA) VTP56512.1
Alteromonas macleodii MIT1002 6 K07070 nan Predicted nucleic-acid-binding protein, contains Zn-ribbon domain VTP56510.1
Alteromonas macleodii MIT1002 7 1.75873E-5 2.97632E-5 3.38218E-6 K06158 nan ATPase components of ABC transporters with duplicated ATPase domains (Uup) (PDB:5ZXD) VTP56508.1
Alteromonas macleodii MIT1002 8 nan Uncharacterized conserved protein, DUF2390 domain VTP56506.1
Alteromonas macleodii MIT1002 9 7.49848E-5 7.6689E-6 5.1126E-6 6.39075E-6 K07019 nan Predicted hydrolase of the alpha/beta-hydrolase fold (YheT) VTP56504.1
Alteromonas macleodii MIT1002 10 4.50958E-5 K09898 nan Uncharacterized conserved protein YheU, UPF0270 family (YheU) (PDB:1Y0N) VTP56502.1
Alteromonas macleodii MIT1002 11 0.005864042 1.37003E-4 9.78137E-4 0.00639692 nan VTP56500.1
Alteromonas macleodii MIT1002 12 9.25964E-4 5.14183E-4 0.001336118 5.41275E-4 K03670 nan Periplasmic glucan biosynthesis protein OpgG (MdoG) (PDB:1TXK) VTP56498.1
Alteromonas macleodii MIT1002 13 1.32635E-6 1.32635E-6 K03669 nan Membrane glycosyltransferase (MdoH) VTP56496.1
Alteromonas macleodii MIT1002 14 0.003224347 0.003411704 0.001246526 0.002758221 nan Polyisoprenoid-binding periplasmic protein YceI (YceI) (PDB:1WUB) (PUBMED:15741337;20236316) VTP56494.1
Alteromonas macleodii MIT1002 15 2.81648E-5 8.65808E-5 2.05499E-4 2.03412E-5 K01082 nan 3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase (CysQ) VTP56492.1
Alteromonas macleodii MIT1002 16 9.71848E-5 1.0659E-4 2.97825E-5 1.881E-5 K08312 nan 8-oxo-dGTP pyrophosphatase MutT and related house-cleaning NTP pyrophosphohydrolases, NUDIX family (MutT) (PDB:4V14) VTP56490.1
Alteromonas macleodii MIT1002 17 9.27601E-6 K20881 nan FMN and 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB, HAD superfamily (riboflavin biosynthesis) (YigB) (PDB:4JB3) (PUBMED:24123841) VTP56488.1
Alteromonas macleodii MIT1002 18 1.94335E-5 K01529 nan Non-canonical (house-cleaning) NTP pyrophosphatase, all-alpha NTP-PPase family (YjjX) (PDB:1U14) VTP56486.1
Alteromonas macleodii MIT1002 19 1.90339E-6 4.75848E-6 nan Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenase (AdhE) (PDB:1A4S) VTP56484.1
Alteromonas macleodii MIT1002 20 K00784 nan Ribonuclease BN, tRNA processing enzyme (ElaC) (PDB:1WW1) VTP56482.1
Alteromonas macleodii MIT1002 21 0.003796458 5.88088E-4 0.00113439 0.002691565 nan Uncharacterized conserved protein YdgA, DUF945 family (YdgA) VTP56480.1
Alteromonas macleodii MIT1002 22 1.00432E-4 5.95588E-5 1.09775E-4 5.60553E-5 K02463 nan VTP56478.1
Alteromonas macleodii MIT1002 23 1.38265E-5 4.97755E-5 5.53061E-5 2.21224E-5 K02462 nan Type II secretory pathway, component PulM (PulM) (PDB:1UV7) VTP56476.1
Alteromonas macleodii MIT1002 24 5.65675E-4 3.54098E-4 1.0138E-4 3.74668E-4 K02461 nan Type II secretory pathway, component PulL (PulL) (PDB:2W7V) (PUBMED:11679764) VTP56474.1
Alteromonas macleodii MIT1002 25 K02460 nan Type II secretory pathway, component PulK (PulK) (PDB:5VTM) VTP56472.1
Alteromonas macleodii MIT1002 26 2.39571E-5 1.69109E-5 K02459 nan Type II secretory pathway, PulJ/GspJ component (PulJ) VTP56470.1
Alteromonas macleodii MIT1002 27 K02458 nan Type II secretory pathway, pseudopilin PulG (PulG) (PDB:1AY2) VTP56468.1
Alteromonas macleodii MIT1002 28 K02457 nan Type II secretory pathway, pseudopilin PulG (PulG) (PDB:1AY2) VTP56466.1
Alteromonas macleodii MIT1002 29 1.33421E-4 2.22369E-4 1.81938E-4 7.88398E-5 K02456 nan Type II secretory pathway, pseudopilin PulG (PulG) (PDB:1AY2) VTP56464.1
Alteromonas macleodii MIT1002 30 2.47142E-4 1.6524E-4 7.9028E-5 6.5737E-5 K02455 nan Type II secretory pathway, component PulF (PulF) (PDB:2VMA) VTP56462.1
Alteromonas macleodii MIT1002 31 6.75138E-6 1.56407E-4 7.76408E-5 1.68785E-6 K02454 nan Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB (PulE) (PDB:4KSR) VTP56460.1
Alteromonas macleodii MIT1002 32 0.001305103 0.001166481 4.01702E-4 8.0598E-4 K02453 nan Type II secretory pathway component GspD/PulD (secretin) (PulD) (PDB:5TCQ) VTP56458.1
Alteromonas macleodii MIT1002 33 6.22765E-4 4.65152E-4 3.16188E-4 2.14796E-4 K02452 nan Type II secretory pathway, component PulC (PulC) (PDB:2LNV) VTP56456.1
Alteromonas macleodii MIT1002 34 4.26559E-5 2.62498E-5 K04762 nan Ribosomal 50S subunit-recycling heat shock protein, contains S4 domain (HslR) (PDB:3BBU) VTP56454.1
Alteromonas macleodii MIT1002 35 7.35257E-6 1.26464E-4 1.4215E-4 1.91167E-5 K04083 nan Redox-regulated molecular chaperone, HSP33 family (HslO) (PDB:1HW7) VTP56452.1
Alteromonas macleodii MIT1002 36 0.014442481 0.001270573 6.42614E-4 0.002912904 K01610 Gluconeogenesis, oxaloacetate => fructose-6P Phosphoenolpyruvate carboxykinase, ATP-dependent (PckA) (PDB:1AQ2) VTP56450.1
Alteromonas macleodii MIT1002 37 7.99095E-6 1.08967E-6 1.08967E-6 K18820 nan Alpha-glucosidase/xylosidase, GH31 family (YicI) (PDB:1WE5) (PUBMED:15294295) VTP56448.1
Alteromonas macleodii MIT1002 38 K08174 nan Fucose permease (FucP) (PDB:3O7P) VTP56446.1
Alteromonas macleodii MIT1002 39 8.01246E-6 K07638 nan K+-sensing histidine kinase KdpD (KdpD) (PDB:2KSF) VTP56444.1
Alteromonas macleodii MIT1002 40 3.29763E-5 1.34348E-4 2.25949E-4 4.58004E-5 K07659 nan DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain (OmpR) (PDB:1XHF) VTP56442.1
Alteromonas macleodii MIT1002 41 nan VTP56438.1
Alteromonas macleodii MIT1002 42 1.42179E-4 5.74559E-4 4.29458E-4 1.82593E-4 K00855 Reductive pentose phosphate cycle (Calvin cycle) Phosphoribulokinase (PrkB) (PDB:1A7J) VTP56436.1
Alteromonas macleodii MIT1002 43 K10716 nan cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases (Crp) (PDB:1FT9) VTP56434.1
Alteromonas macleodii MIT1002 44 nan
Alteromonas macleodii MIT1002 45 nan Glucose/arabinose dehydrogenase, beta-propeller fold (YliI) (PDB:1C9U) VTP56432.1
Alteromonas macleodii MIT1002 46 K03796 nan Uncharacterized FlgJ-related protein (Bax) VTP56430.1
Alteromonas macleodii MIT1002 47 8.93001E-4 0.001584906 0.001116592 6.30895E-4 K01945 Inosine monophosphate biosynthesis, PRPP + glutamine => IMP Phosphoribosylamine-glycine ligase (PurD) (PDB:1GSO) VTP56428.1
Alteromonas macleodii MIT1002 48 1.79551E-4 4.68347E-4 4.55367E-4 2.66082E-4 nan Predicted methyltransferase VTP56426.1
Alteromonas macleodii MIT1002 49 0.001512233 0.001943075 0.001880914 3.03036E-4 K00602 Inosine monophosphate biosynthesis, PRPP + glutamine => IMP AICAR transformylase/IMP cyclohydrolase PurH (PurH) (PDB:1G8M) VTP56424.1
Alteromonas macleodii MIT1002 50 2.26641E-4 3.8529E-4 2.32685E-4 1.1332E-4 K03557 nan DNA-binding protein Fis (factor for inversion stimulation) (Fis) (PDB:1ETK) VTP56422.1
Alteromonas macleodii MIT1002 51 1.10362E-4 1.32435E-5 K05540 nan tRNA-dihydrouridine synthase (DusA) (PDB:1VHN) VTP56420.1
Alteromonas macleodii MIT1002 52 3.01153E-5 2.91115E-5 K02687 nan Ribosomal protein L11 methylase PrmA (PrmA) (PDB:3GRZ) VTP56418.1
Alteromonas macleodii MIT1002 53 K02030 nan ABC-type amino acid transport/signal transduction system, periplasmic component/domain (HisJ) (PDB:1GGG) VTP56416.1
Alteromonas macleodii MIT1002 54 1.47921E-4 1.5771E-5 5.49265E-5 1.21545E-4 K01426 nan Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase (GatA) (PDB:3H0L) VTP56414.1
Alteromonas macleodii MIT1002 55 nan VTP56412.1
Alteromonas macleodii MIT1002 56 nan VTP56410.1
Alteromonas macleodii MIT1002 57 nan VTP56408.1
Alteromonas macleodii MIT1002 58 5.89267E-5 0.001940048 2.96144E-4 nan VTP56406.1
Alteromonas macleodii MIT1002 59 nan FMN reductase RutF, DIM6/NTAB family (RutF) (PDB:1EJE) VTP56404.1
Alteromonas macleodii MIT1002 60 nan VTP56402.1
Alteromonas macleodii MIT1002 61 K02342 nan DNA polymerase III, alpha subunit (gram-positive type) (PolC) VTP56400.1
Alteromonas macleodii MIT1002 62 nan VTP56398.1
Alteromonas macleodii MIT1002 63 nan VTP56396.1
Alteromonas macleodii MIT1002 64 2.73946E-6 nan VTP56394.1
Alteromonas macleodii MIT1002 65 0.003285988 0.009739928 0.009371394 0.005643099 K01961 3-Hydroxypropionate bi-cycle Biotin carboxylase (AccC) (PDB:1BNC) VTP56392.1
Alteromonas macleodii MIT1002 66 5.02496E-4 0.001473226 5.34853E-4 0.00128479 K02160 3-Hydroxypropionate bi-cycle Biotin carboxyl carrier protein (AccB) (PDB:1A6X) VTP56390.1
Alteromonas macleodii MIT1002 67 K03786 Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate 3-dehydroquinate dehydratase (AroQ) (PDB:1D0I) VTP56388.1
Alteromonas macleodii MIT1002 68 nan Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain (NlpD) (PDB:2GU1) VTP56386.1
Alteromonas macleodii MIT1002 69 1.40027E-6 1.40027E-6 K04084 nan Thiol:disulfide interchange protein DsbD (DsbD) (PDB:1JPE) VTP56384.1
Alteromonas macleodii MIT1002 70 K03926 nan Divalent cation tolerance protein CutA (CutA1) (PDB:1NAQ) VTP56382.1
Alteromonas macleodii MIT1002 71 5.72768E-5 1.26346E-5 1.26346E-5 6.3173E-5 K07113 nan FxsA protein affecting phage T7 exclusion by the F plasmid, UPF0716 family (FxsA) VTP56380.1
Alteromonas macleodii MIT1002 72 0.001303784 0.002891531 0.002891531 0.004401417 K04078 nan Co-chaperonin GroES (HSP10) (GroES) VTP56378.1
Alteromonas macleodii MIT1002 73 0.049258556 0.103933156 0.04889713 0.16474746 K04077 nan Chaperonin GroEL (HSP60 family) (GroEL) (PDB:1AON) VTP56376.1
Alteromonas macleodii MIT1002 74 K01728 Pectin degradation Pectate lyase (PelB) (PDB:1AIR)!!!Pectin methylesterase and related acyl-CoA thioesterases (PemB) (PDB:1GQ8) VTP56374.1
Alteromonas macleodii MIT1002 75 K02014 nan Outer membrane receptor for ferrienterochelin and colicins (FepA) (PDB:2HDF) (PUBMED:16468998) VTP56372.1
Alteromonas macleodii MIT1002 76 nan Pectin methylesterase and related acyl-CoA thioesterases (PemB) (PDB:1GQ8) VTP56370.1
Alteromonas macleodii MIT1002 77 nan DNA-binding transcriptional regulator, IclR family (IclR) (PDB:1MKM) VTP56368.1
Alteromonas macleodii MIT1002 78 nan VTP56366.1
Alteromonas macleodii MIT1002 79 1.12379E-5 K02297 Cytochrome o ubiquinol oxidase Heme/copper-type cytochrome/quinol oxidase, subunit 2 (CyoA) (PDB:1CYW) VTP56364.1
Alteromonas macleodii MIT1002 80 K02298 Cytochrome o ubiquinol oxidase Heme/copper-type cytochrome/quinol oxidase, subunit 1 (CyoB) (PDB:1AR1) VTP56362.1
Alteromonas macleodii MIT1002 81 K02299 Cytochrome o ubiquinol oxidase Heme/copper-type cytochrome/quinol oxidase, subunit 3 (CyoC) (PDB:1QLE) VTP56360.1
Alteromonas macleodii MIT1002 82 K02300 Cytochrome o ubiquinol oxidase Heme/copper-type cytochrome/quinol oxidase, subunit 4 (CyoD) VTP56358.1
Alteromonas macleodii MIT1002 83 K02257 Cytochrome c oxidase Polyprenyltransferase (heme O synthase) (CyoE) VTP56356.1
Alteromonas macleodii MIT1002 84 nan VTP56354.1
Alteromonas macleodii MIT1002 85 nan Peptidyl-prolyl isomerase, parvulin family (SurA) (PDB:2ZR5) VTP56352.1
Alteromonas macleodii MIT1002 86 1.41833E-5 nan VTP56350.1
Alteromonas macleodii MIT1002 87 3.98264E-5 2.62855E-5 2.38959E-5 K07165 nan Periplasmic ferric-dicitrate binding protein FecR, regulates iron transport (FecR) (PDB:5CAM) VTP56348.1
Alteromonas macleodii MIT1002 88 4.48657E-6 K03088 nan DNA-directed RNA polymerase specialized sigma subunit, sigma24 family (RpoE) (PDB:2Q1Z) VTP56346.1
Alteromonas macleodii MIT1002 89 1.89111E-5 8.34314E-7 K02014 nan Outer membrane receptor for ferrienterochelin and colicins (FepA) (PDB:2HDF) (PUBMED:16468998) VTP56344.1
Alteromonas macleodii MIT1002 90 nan VTP56342.1
Alteromonas macleodii MIT1002 91 0.006066689 0.003585549 0.10094116 K16087 nan Outer membrane receptor protein, Fe transport (CirA) (PDB:1BY3) VTP56340.1
Alteromonas macleodii MIT1002 92 5.89576E-4 3.35314E-4 0.002165109 nan Uncharacterized protein, contains GH25 family domain VTP56338.1
Alteromonas macleodii MIT1002 93 1.08818E-4 nan VTP56336.1
Alteromonas macleodii MIT1002 94 5.50752E-6 7.46576E-5 1.1933E-4 K03734 nan FAD:protein FMN transferase ApbE (ApbE) (PDB:1VRM) (PUBMED:23558683;30154099)!!!Predicted periplasmic protein VTP56334.1
Alteromonas macleodii MIT1002 95 1.4968E-5 1.4968E-5 nan VTP56332.1
Alteromonas macleodii MIT1002 96 4.58078E-4 6.38461E-4 2.84816E-4 nan VTP56330.1
Alteromonas macleodii MIT1002 97 6.73845E-6 5.05384E-5 K14266 Rebeccamycin biosynthesis, tryptophan => rebeccamycin Dehydrogenase (flavoprotein) (FixC) (PDB:4OPU) VTP56328.1
Alteromonas macleodii MIT1002 98 8.53931E-5 0.01211916 0.014765741 0.017827628 K02014 nan Outer membrane receptor for ferrienterochelin and colicins (FepA) (PDB:2HDF) (PUBMED:16468998) VTP56326.1
Alteromonas macleodii MIT1002 99 0.002791135 2.87032E-4 0.001061332 0.001429829 K00324 nan NAD/NADP transhydrogenase alpha subunit (PntA) (PDB:1F8G) VTP56324.1
Alteromonas macleodii MIT1002 100 nan NAD/NADP transhydrogenase alpha subunit (PntA) (PDB:1F8G) VTP56322.1
Alteromonas macleodii MIT1002 101 0.002032823 9.32662E-5 0.001105237 0.003940975 K00325 nan NAD/NADP transhydrogenase beta subunit (PntB) (PDB:1D4O) VTP56320.1
Alteromonas macleodii MIT1002 102 nan VTP56318.1
Alteromonas macleodii MIT1002 103 0.003811053 0.003113735 0.003374595 0.002440383 K01583 Polyamine biosynthesis, arginine => agmatine => putrescine => spermidine Arginine decarboxylase (spermidine biosynthesis) (SpeA) (PDB:3N2O) VTP56316.1
Alteromonas macleodii MIT1002 104 2.30201E-6 K01467 nan CubicO group peptidase, beta-lactamase class C family (AmpC) (PDB:1BLS) VTP56314.1
Alteromonas macleodii MIT1002 105 1.83202E-6 K13529 nan 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase (AlkA) (PDB:1DIZ)!!!Methylphosphotriester-DNA--protein-cysteine methyltransferase (N-terminal fragment of Ada), contains Zn-binding and two AraC-type DNA-binding domains (AdaA) (PDB:1ADN) VTP56312.1
Alteromonas macleodii MIT1002 106 K00567 nan DNA repair enzyme Ada (O6-methylguanine-DNA--protein-cysteine methyltransferase) (AdaB) (PDB:6RLA) (PUBMED:29061663) VTP56310.1
Alteromonas macleodii MIT1002 107 nan Permease of the drug/metabolite transporter (DMT) superfamily (RhaT) (PDB:5I20) VTP56308.1
Alteromonas macleodii MIT1002 108 4.57346E-4 2.78869E-5 1.85913E-5 2.69574E-5 nan GGDEF domain, diguanylate cyclase (c-di-GMP synthetase) or its enzymatically inactive variants (GGDEF) (PDB:6D9M) VTP56306.1
Alteromonas macleodii MIT1002 109 0.001393629 0.002522669 0.003637442 0.001086564 K04042 UDP-N-acetyl-D-glucosamine biosynthesis, prokaryotes, glucose => UDP-GlcNAc Bifunctional protein GlmU, N-acetylglucosamine-1-phosphate-uridyltransferase/glucosamine-1-phosphate-acetyltransferase (GlmU) (PDB:3FWW) VTP56304.1
Alteromonas macleodii MIT1002 110 6.35381E-6 2.28737E-5 1.86378E-5 1.01661E-5 K16044 nan Predicted dehydrogenase (MviM) (PDB:3UUW) VTP56302.1
Alteromonas macleodii MIT1002 111 nan DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family (GlpR) VTP56300.1
Alteromonas macleodii MIT1002 112 0.001108099 0.001613615 0.002122495 9.80278E-4 K00820 UDP-N-acetyl-D-glucosamine biosynthesis, eukaryotes, glucose => UDP-GlcNAc Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains (GlmS) (PDB:2J6H) VTP56298.1
Alteromonas macleodii MIT1002 113 2.681E-6 nan Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase) (SsuD) (PDB:1BRL) VTP56296.1
Alteromonas macleodii MIT1002 114 2.58637E-6 6.37971E-5 7.41428E-5 2.58637E-6 nan ABC-type uncharacterized transport system, periplasmic component (PDB:3LFT) VTP56294.1
Alteromonas macleodii MIT1002 115 4.80154E-4 2.90379E-4 1.87031E-4 1.81772E-4 nan Signal transduction histidine kinase (BaeS) (PDB:1JOY)!!!CheY-like REC (receiver) domain, includes chemotaxis protein CheY  and sporulation regulator Spo0F (CheY) (PDB:6QRJ) VTP56292.1
Alteromonas macleodii MIT1002 116 7.369E-6 K18967 nan GGDEF domain, diguanylate cyclase (c-di-GMP synthetase) or its enzymatically inactive variants (GGDEF) (PDB:6D9M) VTP56290.1
Alteromonas macleodii MIT1002 117 2.38383E-5 2.41914E-4 1.45678E-4 3.84061E-5 K23256 nan NADPH-dependent curcumin reductase CurA (CurA) (PDB:1V3T) (PUBMED:21467222) VTP56288.1
Alteromonas macleodii MIT1002 118 0.002164696 7.97656E-5 4.80539E-4 0.001653677 K06076 nan Long-chain fatty acid transport protein (FadL) (PDB:1T16) VTP56286.1
Alteromonas macleodii MIT1002 119 2.99105E-6 2.20341E-4 7.67703E-5 6.72987E-5 K21698 nan DNA-binding transcriptional regulator, LysR family (LysR) (PDB:2FYI) VTP56284.1
Alteromonas macleodii MIT1002 120 1.9716E-4 3.77744E-4 1.43944E-4 1.53104E-4 K01243 Cysteine biosynthesis, methionine => cysteine Nucleoside phosphorylase/nucleosidase, includes 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase MtnN and futalosine hydrolase MqnB (MtnN) (PDB:1T8R) (PUBMED:18801996) VTP56282.1
Alteromonas macleodii MIT1002 121 nan VTP56280.1
Alteromonas macleodii MIT1002 122 4.67975E-5 8.29594E-6 8.29594E-6 2.55259E-5 K02014 nan Outer membrane receptor protein, Fe transport (CirA) (PDB:1BY3) VTP56278.1
Alteromonas macleodii MIT1002 123 0.003807183 6.68046E-4 4.22642E-4 5.31711E-4 K03885 nan NADH dehydrogenase, FAD-containing subunit (Ndh) (PDB:5NA4) VTP56276.1
Alteromonas macleodii MIT1002 124 4.39684E-4 4.88017E-4 3.75758E-4 1.42663E-4 nan Polyisoprenoid-binding periplasmic protein YceI (YceI) (PDB:1WUB) (PUBMED:15741337;20236316) VTP56274.1
Alteromonas macleodii MIT1002 125 K12262 nan Cytochrome b561 (CybB) (PDB:5OC0) VTP56272.1
Alteromonas macleodii MIT1002 126 nan VTP56270.1
Alteromonas macleodii MIT1002 127 1.17563E-5 nan CBS domain (CBS) (PDB:1B3O) VTP56268.1
Alteromonas macleodii MIT1002 128 2.37667E-5 nan VTP56266.1
Alteromonas macleodii MIT1002 129 nan VTP56264.1
Alteromonas macleodii MIT1002 130 1.41344E-4 1.13834E-5 2.84585E-6 8.25298E-5 nan 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase MenH and related esterases, alpha/beta hydrolase fold (MenH) (PDB:4MYS) VTP56262.1
Alteromonas macleodii MIT1002 131 K15034 nan Protein chain release factor PrfB (PrfB) (PDB:1GQE) VTP56260.1
Alteromonas macleodii MIT1002 132 1.2702E-4 4.55968E-4 7.21733E-4 5.66704E-5 nan VTP56258.1
Alteromonas macleodii MIT1002 133 nan VTP56256.1
Alteromonas macleodii MIT1002 134 nan VTP56254.1
Alteromonas macleodii MIT1002 135 nan Serine protease, subtilisin family (AprE) (PDB:1SCJ) VTP56252.1
Alteromonas macleodii MIT1002 136 5.3295E-6 K03088 nan DNA-directed RNA polymerase specialized sigma subunit, sigma24 family (RpoE) (PDB:2Q1Z) VTP56250.1
Alteromonas macleodii MIT1002 137 3.15185E-6 3.15185E-6 nan VTP56248.1
Alteromonas macleodii MIT1002 138 9.14949E-5 2.03322E-5 5.76079E-5 6.35381E-5 nan VTP56246.1
Alteromonas macleodii MIT1002 139 nan Uncharacterized conserved protein YjbJ, UPF0337 family (yjbJ) (PDB:1RYK) VTP56244.1
Alteromonas macleodii MIT1002 140 K07229 nan NADPH-dependent ferric siderophore reductase, contains FAD-binding and SIP domains (ViuB) (PDB:2GPJ) VTP56242.1
Alteromonas macleodii MIT1002 141 nan Predicted arabinose efflux permease AraJ, MFS family (AraJ) (PDB:4LDS) VTP56240.1
Alteromonas macleodii MIT1002 142 1.4673E-4 2.90756E-5 6.9646E-5 1.38955E-4 K07003 nan Predicted exporter protein, RND superfamily (MMPL) (PDB:5KHN) VTP56238.1
Alteromonas macleodii MIT1002 143 7.70321E-5 1.10046E-4 1.05044E-4 1.47061E-4 nan Outer membrane lipoprotein-sorting protein (LolA) (PDB:1IWL) VTP56236.1
Alteromonas macleodii MIT1002 144 4.09389E-6 1.63756E-6 nan VTP56234.1
Alteromonas macleodii MIT1002 145 1.14204E-5 nan VTP56232.1
Alteromonas macleodii MIT1002 146 0.001127139 4.03735E-4 3.47322E-4 5.30939E-5 nan Predicted secreted acid phosphatase (PDB:3OCY) VTP56230.1
Alteromonas macleodii MIT1002 147 1.14204E-5 2.56958E-5 1.14204E-5 K09007 Tetrahydrofolate biosynthesis, GTP => THF GTP cyclohydrolase FolE2 (FolE2) (PDB:2R5R) (PUBMED:19767425) VTP56228.1
Alteromonas macleodii MIT1002 148 nan VTP56226.1
Alteromonas macleodii MIT1002 149 3.80495E-5 nan VTP56224.1
Alteromonas macleodii MIT1002 150 9.31999E-6 1.31576E-5 K02014 nan Outer membrane receptor protein, Fe transport (CirA) (PDB:1BY3) VTP56222.1
Alteromonas macleodii MIT1002 151 1.38682E-5 nan ABC-type Zn uptake system ZnuABC, Zn-binding component ZnuA (ZnuA) (PDB:1K0F) VTP56220.1
Alteromonas macleodii MIT1002 152 nan Ketosteroid isomerase homolog YybH (YybH) (PDB:2GXF) VTP56218.1
Alteromonas macleodii MIT1002 153 nan VTP56216.1
Alteromonas macleodii MIT1002 154 K07090 nan Sulfite exporter TauE/SafE/YfcA and related permeases, UPF0721 family (TauE) (PUBMED:21183667;22797525) VTP56214.1
Alteromonas macleodii MIT1002 155 9.97865E-6 2.2452E-5 4.98932E-6 8.10766E-6 K02014 nan Outer membrane receptor for ferrienterochelin and colicins (FepA) (PDB:2HDF) (PUBMED:16468998) VTP56212.1
Alteromonas macleodii MIT1002 156 nan VTP56210.1
Alteromonas macleodii MIT1002 157 2.02619E-6 5.06548E-6 2.02619E-6 K21405 nan DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains (AtoC) (PDB:1ZY2) VTP56208.1
Alteromonas macleodii MIT1002 158 nan VTP56206.1
Alteromonas macleodii MIT1002 159 2.39625E-5 1.6718E-6 K00425 Cytochrome bd ubiquinol oxidase Cytochrome bd-type quinol oxidase, subunit 1 (AppC) (PDB:5DOQ) VTP56204.1
Alteromonas macleodii MIT1002 160 8.53002E-5 2.32637E-6 K00426 Cytochrome bd ubiquinol oxidase Cytochrome bd-type quinol oxidase, subunit 2 (AppB) (PDB:6RKO) VTP56202.1
Alteromonas macleodii MIT1002 161 K00424 Cytochrome bd ubiquinol oxidase Predicted outer membrane lipoprotein VTP56200.1
Alteromonas macleodii MIT1002 162 1.39804E-6 K16013 nan ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components (CydD) VTP56198.1
Alteromonas macleodii MIT1002 163 nan ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components (CydC) VTP56196.1
Alteromonas macleodii MIT1002 164 6.73845E-6 8.42306E-6 nan Predicted arabinose efflux permease AraJ, MFS family (AraJ) (PDB:4LDS) VTP56194.1
Alteromonas macleodii MIT1002 165 2.64074E-6 1.93655E-5 2.1126E-5 K02529 nan DNA-binding transcriptional regulator, LacI/PurR family (PurR) (PDB:1BDH) VTP56192.1
Alteromonas macleodii MIT1002 166 7.78201E-6 7.78201E-6 K05350 nan Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase (BglB) (PDB:4HZ6) VTP56190.1
Alteromonas macleodii MIT1002 167 K02429 nan Fucose permease (FucP) (PDB:3O7P) VTP56188.1
Alteromonas macleodii MIT1002 168 2.58638E-6 5.72451E-5 3.62092E-5 2.83984E-4 K05349 nan Periplasmic beta-glucosidase and related glycosidases (BglX) (PDB:2X40) VTP56186.1
Alteromonas macleodii MIT1002 169 K03315 nan Na+/H+ antiporter NhaC/MleN (NhaC) VTP56184.1
Alteromonas macleodii MIT1002 170 nan GGDEF domain, diguanylate cyclase (c-di-GMP synthetase) or its enzymatically inactive variants (GGDEF) (PDB:6D9M) VTP56182.1
Alteromonas macleodii MIT1002 171 8.964E-6 2.36649E-4 1.3446E-5 0.001409588 K02014 nan Outer membrane receptor for ferrienterochelin and colicins (FepA) (PDB:2HDF) (PUBMED:16468998) VTP56180.1
Alteromonas macleodii MIT1002 172 1.24733E-5 6.36795E-5 1.77252E-5 2.2255E-4 nan Beta-glucanase, GH16 family (BglS) (PDB:1AJK) VTP56178.1
Alteromonas macleodii MIT1002 173 K16264 nan Co/Zn/Cd efflux system component (CzcD) VTP56176.1
Alteromonas macleodii MIT1002 174 3.2894E-6 1.09647E-6 K02014 nan Outer membrane receptor protein, Fe transport (CirA) (PDB:1BY3) VTP56174.1
Alteromonas macleodii MIT1002 175 K03307 nan Uncharacterized membrane permease YidK, sodium:solute symporter family (YidK) (PDB:2XQ2) VTP56172.1
Alteromonas macleodii MIT1002 176 K01811 nan Alpha-glucosidase/xylosidase, GH31 family (YicI) (PDB:1WE5) (PUBMED:15294295) VTP56170.1
Alteromonas macleodii MIT1002 177 K07090 nan Sulfite exporter TauE/SafE/YfcA and related permeases, UPF0721 family (TauE) (PUBMED:21183667;22797525) VTP56168.1
Alteromonas macleodii MIT1002 178 7.1809E-5 9.06441E-5 1.56567E-4 K03710 nan DNA-binding transcriptional regulator, GntR family (MngR) (PDB:2WV0) VTP56166.1
Alteromonas macleodii MIT1002 179 2.77403E-6 K17743 nan Aldo/keto reductase, related to diketogulonate reductase (ARA1) (PDB:1Q13) VTP56164.1
Alteromonas macleodii MIT1002 180 2.62498E-6 nan Taurine dioxygenase, alpha-ketoglutarate-dependent (TauD) (PDB:1DRT) VTP56162.1
Alteromonas macleodii MIT1002 181 nan Uncharacterized membrane protein YadS, UPF0324 family (YeiH) VTP56160.1
Alteromonas macleodii MIT1002 182 K00387 nan Molybdopterin-dependent catalytic subunit of periplasmic DMSO/TMAO and protein-methionine-sulfoxide reductases (MsrP) (PDB:1OGP) (PUBMED:26641313;32750406) VTP56158.1
Alteromonas macleodii MIT1002 183 nan Cytochrome c2 (Cyc7) (PDB:1YEA) VTP56156.1
Alteromonas macleodii MIT1002 184 5.53676E-5 2.44269E-6 2.44269E-6 K03406 nan Methyl-accepting chemotaxis protein (MCP) (Tar) (PDB:1QU7) VTP56154.1
Alteromonas macleodii MIT1002 185 1.75522E-6 K02482 nan Signal transduction histidine kinase regulating C4-dicarboxylate transport system (PDB:4GCZ) VTP56152.1
Alteromonas macleodii MIT1002 186 0.002192534 7.95298E-4 7.90254E-4 0.001564535 K03776 nan Methyl-accepting chemotaxis protein (MCP) (Tar) (PDB:1QU7)!!!PAS domain (PAS) (PDB:2MWG) VTP56150.1
Alteromonas macleodii MIT1002 187 3.32339E-5 2.19343E-5 1.99403E-6 4.98508E-6 K02004 nan ABC-type transport system involved in lipoprotein release, permease component LolC (LolE) (PDB:6F49) VTP56148.1
Alteromonas macleodii MIT1002 188 3.18373E-5 7.68485E-5 1.64676E-5 4.77559E-5 K02003 nan ABC-type lipoprotein export system, ATPase component (LolD) (PDB:5GKO) VTP56146.1
Alteromonas macleodii MIT1002 189 K09918 nan dsDNA-binding SOS-regulon protein YebG, induction by DNA damage requires cAMP (YebG) (PDB:3ERM) (PUBMED:9368369;21697094) VTP56144.1
Alteromonas macleodii MIT1002 190 0.009551825 0.0058911 0.008130291 0.013332664 K02990 nan Ribosomal protein S6 (RpsF) (PDB:4V4H) VTP56142.1
Alteromonas macleodii MIT1002 191 0.011994571 0.052918375 0.013897913 0.019211246 K02963 nan Ribosomal protein S18 (RpsR) (PDB:4V4H) VTP56140.1
Alteromonas macleodii MIT1002 192 0.014175402 0.03818604 0.03791246 0.109797806 K02939 nan Ribosomal protein L9 (RplI) (PDB:1VS6) (PUBMED:27112601) VTP56138.1
Alteromonas macleodii MIT1002 193 nan Multidrug efflux pump subunit AcrB (AcrB) (PDB:1IWG) VTP56136.1
Alteromonas macleodii MIT1002 194 K03585 Multidrug resistance, efflux pump MexAB-OprM Multidrug efflux pump subunit AcrA (membrane-fusion protein) (AcrA) (PDB:1T5E) VTP56134.1
Alteromonas macleodii MIT1002 195 0.003967699 0.002020436 0.0366784 K16087 nan Outer membrane receptor for ferrienterochelin and colicins (FepA) (PDB:2HDF) (PUBMED:16468998) VTP56132.1
Alteromonas macleodii MIT1002 196 nan PepSY-associated TM region (PiuB) (PUBMED:15124630) VTP56130.1
Alteromonas macleodii MIT1002 197 3.69482E-6 K19609 nan Signal transduction histidine kinase (BaeS) (PDB:1JOY) VTP56128.1
Alteromonas macleodii MIT1002 198 K19610 nan DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain (OmpR) (PDB:1XHF) VTP56126.1
Alteromonas macleodii MIT1002 199 K13985 nan L-ascorbate lactonase UlaG, metallo-beta-lactamase superfamily (UlaG) (PDB:2WYM) VTP56124.1
Alteromonas macleodii MIT1002 200 3.66403E-5 4.61396E-5 5.90318E-5 nan N-hydroxylaminopurine reductase YiiM, contains MOSC domain (YiiM) (PDB:1O65) (PUBMED:18312271;29459651) VTP56122.1
Alteromonas macleodii MIT1002 201 K03088 nan DNA-directed RNA polymerase specialized sigma subunit, sigma24 family (RpoE) (PDB:2Q1Z) VTP56120.1
Alteromonas macleodii MIT1002 202 nan VTP56118.1
Alteromonas macleodii MIT1002 203 4.31321E-5 2.37667E-5 1.93655E-5 5.94167E-5 K11621 nan Uncharacterized conserved protein YvlB, contains  DUF4097 and DUF4098 domains (YvlB) VTP56116.1
Alteromonas macleodii MIT1002 204 nan VTP56114.1
Alteromonas macleodii MIT1002 205 1.09365E-4 7.9035E-4 1.58324E-4 3.05203E-5 K02314 nan Replicative DNA helicase (DnaB) (PDB:1B79) VTP56112.1
Alteromonas macleodii MIT1002 206 0.16804165 0.06455764 0.087295994 0.7010127 K03286 nan Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins (OmpA) (PDB:1OAP) VTP56110.1
Alteromonas macleodii MIT1002 207 nan Thiamin phosphate synthase YjbQ, UPF0047 family (YjbQ) (PDB:1VE0) VTP56108.1
Alteromonas macleodii MIT1002 208 4.18746E-5 2.37924E-4 1.97953E-4 3.71162E-5 K03409 nan Chemotaxis protein CheX, a CheY~P-specific phosphatase (CheX) (PDB:3H2D) VTP56106.1
Alteromonas macleodii MIT1002 209 9.33512E-5 5.04096E-5 K09823 nan Fe2+ or Zn2+ uptake regulation protein Fur/Zur (Fur) (PDB:1MZB) VTP56104.1
Alteromonas macleodii MIT1002 210 K07740 nan Regulator of sigma D (Rsd) (PDB:2P7V) VTP56102.1
Alteromonas macleodii MIT1002 211 7.93651E-6 2.32805E-5 5.07938E-5 K03426 nan NADH pyrophosphatase NudC, Nudix superfamily (NPY1) VTP56100.1
Alteromonas macleodii MIT1002 212 2.53555E-4 8.51105E-4 0.001329145 0.001721186 K01599 Heme biosynthesis, animals and fungi, glycine => heme Uroporphyrinogen-III decarboxylase HemE (HemE) (PDB:2DG5) VTP56098.1
Alteromonas macleodii MIT1002 213 4.24816E-5 1.27445E-5 nan VTP56096.1
Alteromonas macleodii MIT1002 214 K18979 nan Epoxyqueuosine reductase QueG (queuosine biosynthesis) (QueG) (PDB:5D08) (PUBMED:2150253) VTP56094.1
Alteromonas macleodii MIT1002 215 8.93465E-4 0.00298703 0.00113607 0.001129608 K23997 nan NAD(P)H-hydrate repair enzyme Nnr, NAD(P)H-hydrate epimerase domain (Nnr1) (PDB:3RRB)!!!NAD(P)H-hydrate repair enzyme Nnr, NAD(P)H-hydrate dehydratase domain (Nnr2) (PDB:1KYH) VTP56092.1
Alteromonas macleodii MIT1002 216 3.84723E-5 K06925 nan tRNA A37 threonylcarbamoyladenosine biosynthesis protein TsaE (TsaE) (PDB:1FL9) VTP56090.1
Alteromonas macleodii MIT1002 217 1.9585E-6 5.02682E-5 1.37095E-5 7.83401E-6 K01448 nan N-acetylmuramoyl-L-alanine amidase (AmiC) (PDB:1JWQ)!!!LysM repeat (LysM) (PDB:1E0G) VTP56088.1
Alteromonas macleodii MIT1002 218 5.6825E-6 2.36771E-5 4.26188E-6 1.42063E-6 K03572 nan DNA mismatch repair ATPase MutL (MutL) (PDB:1B62) VTP56086.1
Alteromonas macleodii MIT1002 219 2.07353E-5 8.48265E-6 K00791 nan tRNA A37 N6-isopentenylltransferase MiaA (MiaA) (PDB:2ZM5) VTP56084.1
Alteromonas macleodii MIT1002 220 0.004793624 0.004639914 0.002881179 0.014166393 K03666 nan sRNA-binding regulator protein Hfq (Hfq) (PDB:1HK9) VTP56082.1
Alteromonas macleodii MIT1002 221 8.19923E-6 8.33591E-5 1.14789E-4 8.19923E-6 K03665 nan 50S ribosomal subunit-associated GTPase HflX (HflX) (PDB:2QTF) (PUBMED:22905870) VTP56080.1
Alteromonas macleodii MIT1002 222 0.009775596 0.007514803 0.010317451 0.029265944 K04088 nan Regulator of protease activity HflC, stomatin/prohibitin superfamily (HflC) VTP56078.1
Alteromonas macleodii MIT1002 223 0.007969329 0.006576748 0.005229185 0.011412268 K04087 nan Regulator of protease activity HflC, stomatin/prohibitin superfamily (HflC) VTP56076.1
Alteromonas macleodii MIT1002 224 6.59938E-6 K12942 nan p-Aminobenzoyl-glutamate transporter AbgT (AbgT) (PDB:4R0C) (PUBMED:17307853) VTP56074.1
Alteromonas macleodii MIT1002 225 2.45766E-4 1.4452E-4 1.70648E-4 6.49115E-4 K01772 Heme biosynthesis, animals and fungi, glycine => heme Protoheme ferro-lyase (ferrochelatase) (HemH) (PDB:1AK1) VTP56072.1
Alteromonas macleodii MIT1002 226 2.64471E-5 6.61178E-6 nan VTP56070.1
Alteromonas macleodii MIT1002 227 nan Protocatechuate 3,4-dioxygenase beta subunit (PcaH) (PDB:1DLM) VTP56068.1
Alteromonas macleodii MIT1002 228 1.61056E-6 3.48956E-5 3.48955E-5 1.04687E-5 K01652 Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine Acetolactate synthase large subunit or other thiamine pyrophosphate-requiring enzyme (IlvB) (PDB:1BFD) VTP56066.1
Alteromonas macleodii MIT1002 229 6.41051E-4 6.93395E-4 5.5915E-4 4.74785E-4 nan Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenase (AdhE) (PDB:1A4S) VTP56064.1
Alteromonas macleodii MIT1002 230 K09966 nan Uncharacterized conserved protein, DUF2237 family (PDB:2LQ3) VTP56062.1
Alteromonas macleodii MIT1002 231 nan 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase (UbiG) (PDB:1BHJ) VTP56060.1
Alteromonas macleodii MIT1002 232 K01046 Acylglycerol degradation Triacylglycerol esterase/lipase EstA, alpha/beta hydrolase fold (EstA) (PDB:1I6W) VTP56058.1
Alteromonas macleodii MIT1002 233 nan Lipase chaperone LimK (LimK) VTP56056.1
Alteromonas macleodii MIT1002 234 K00799 nan Glutathione S-transferase (GstA) (PDB:1A0F) VTP56054.1
Alteromonas macleodii MIT1002 235 K11209 nan Glutathione S-transferase (GstA) (PDB:1A0F) VTP56052.1
Alteromonas macleodii MIT1002 236 K00547 nan Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) (MHT1) (PDB:5DML) VTP56050.1
Alteromonas macleodii MIT1002 237 2.25479E-6 5.63697E-6 nan DNA-binding transcriptional regulator, Lrp family (Lrp) (PDB:1I1G)!!!Sugar kinase of the NBD/HSP70 family, may contain an N-terminal HTH domain (NagC) (PDB:1WOQ) VTP56048.1
Alteromonas macleodii MIT1002 238 6.82738E-6 1.54754E-5 1.82063E-4 1.09238E-5 K00847 nan Sugar or nucleoside kinase, ribokinase family (RbsK) (PDB:2QCV) VTP56046.1
Alteromonas macleodii MIT1002 239 5.75503E-5 K02356 nan Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) (Efp) (PDB:1UEB) VTP56044.1
Alteromonas macleodii MIT1002 240 K10747 nan ATP-dependent DNA ligase (CDC9) (PDB:1A0I) VTP56042.1
Alteromonas macleodii MIT1002 241 K07577 nan RNA processing exonuclease, beta-lactamase fold, Cft2 family (YSH1) (PDB:2DKF) VTP56040.1
Alteromonas macleodii MIT1002 242 2.80948E-6 nan ABC-type amino acid transport/signal transduction system, periplasmic component/domain (HisJ) (PDB:1GGG) VTP56038.1
Alteromonas macleodii MIT1002 243 K07148 nan Uncharacterized membrane protein YeiB (YeiB) VTP56036.1
Alteromonas macleodii MIT1002 244 K03724 nan Lhr-like helicase (Lhr) (PDB:5V9X) VTP56034.1
Alteromonas macleodii MIT1002 245 K06953 nan Metallophosphoesterase superfamily enzyme VTP56032.1
Alteromonas macleodii MIT1002 246 nan AraC-type DNA-binding domain and AraC-containing proteins (AraC) (PDB:1BL0) VTP54748.1
Alteromonas macleodii MIT1002 247 nan VTP54746.1
Alteromonas macleodii MIT1002 248 K15537 nan Sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily (ERG3) (PDB:4ZR0) VTP54744.1
Alteromonas macleodii MIT1002 249 nan VTP54742.1
Alteromonas macleodii MIT1002 250 K01505 nan 1-aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase, PLP-dependent ACC family (Acd) (PDB:4D97) VTP54740.1
Alteromonas macleodii MIT1002 251 nan VTP54738.1
Alteromonas macleodii MIT1002 252 nan VTP54736.1
Alteromonas macleodii MIT1002 253 3.73316E-5 8.50332E-5 6.22194E-5 3.73316E-5 nan Ribose 5-phosphate isomerase RpiB (RpiB) (PDB:1NN4) VTP54734.1
Alteromonas macleodii MIT1002 254 nan Signal transduction histidine kinase (BaeS) (PDB:1JOY) VTP54732.1
Alteromonas macleodii MIT1002 255 K02483 nan DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain (OmpR) (PDB:1XHF) VTP54730.1
Alteromonas macleodii MIT1002 256 6.10672E-6 6.10672E-5 3.86759E-5 1.52668E-6 K00906 nan Isocitrate dehydrogenase kinase/phosphatase (AceK) (PDB:3EPS) VTP54728.1
Alteromonas macleodii MIT1002 257 nan Two-component response regulator, YesN/AraC family, consists of REC and AraC-type DNA-binding domains (YesN) VTP54726.1
Alteromonas macleodii MIT1002 258 K03325 nan Arsenite efflux pump ArsB, ACR3 family (ACR3) VTP54724.1
Alteromonas macleodii MIT1002 259 3.4485E-6 K11811 nan NAD(P)H-dependent FMN reductase (SsuE) (PDB:6DQI) VTP54722.1
Alteromonas macleodii MIT1002 260 2.26934E-5 5.106E-5 5.106E-5 K03741 nan Protein-tyrosine-phosphatase (Wzb) (PDB:4D74) (PUBMED:26641313) VTP54720.1
Alteromonas macleodii MIT1002 261 K03892 nan DNA-binding transcriptional regulator, ArsR family (ArsR) (PDB:3F6V) VTP54718.1
Alteromonas macleodii MIT1002 262 nan VTP54716.1
Alteromonas macleodii MIT1002 263 8.29881E-5 0.001834109 4.63667E-4 3.71162E-4 K00121 nan Zn-dependent alcohol/formaldehyde dehydrogenase (FrmA) (PDB:1A71) VTP54714.1
Alteromonas macleodii MIT1002 264 nan DNA-binding transcriptional regulator, LysR family (LysR) (PDB:2FYI) VTP54712.1
Alteromonas macleodii MIT1002 265 K03701 nan Excinuclease UvrABC ATPase subunit (UvrA) (PDB:2R6F) VTP54710.1
Alteromonas macleodii MIT1002 266 0.008675496 0.00786218 0.010796974 0.014865165 K12524 Threonine biosynthesis, aspartate => homoserine => threonine Homoserine dehydrogenase (ThrA) (PDB:5AVO) (PUBMED:29124164)!!!Aspartate kinase (MetL1) (PDB:2CDQ) VTP54708.1
Alteromonas macleodii MIT1002 267 5.54506E-4 0.001196761 0.001618708 9.75985E-4 K00872 Threonine biosynthesis, aspartate => homoserine => threonine Homoserine kinase (ThrB) (PDB:1FWK) VTP54706.1
Alteromonas macleodii MIT1002 268 0.001869256 0.006085552 0.013930525 0.004359768 K01733 Threonine biosynthesis, aspartate => homoserine => threonine Threonine synthase (ThrC) (PDB:1VB3) VTP54704.1
Alteromonas macleodii MIT1002 269 1.57734E-5 2.89179E-5 6.30936E-5 K03648 nan Uracil-DNA glycosylase (Ung) (PDB:1AKZ) (PUBMED:16237021) VTP54702.1
Alteromonas macleodii MIT1002 270 nan VTP54700.1
Alteromonas macleodii MIT1002 271 0.00175393 0.004500418 0.00402683 0.005001502 K01810 Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate Glucose-6-phosphate isomerase (Pgi) (PDB:1B0Z) VTP54698.1
Alteromonas macleodii MIT1002 272 0.00673906 0.01694689 0.020955957 0.04063973 K00616 Pentose phosphate pathway (Pentose phosphate cycle) Transaldolase/fructose-6-phosphate aldolase (TalA) (PDB:1F05) VTP54696.1
Alteromonas macleodii MIT1002 273 nan VTP54692.1
Alteromonas macleodii MIT1002 274 2.78353E-4 7.72569E-5 5.79428E-5 K09861 nan DNA-binding protein YaaA associated with the oxidative stress response (YaaA) (PDB:5CAJ) (PUBMED:21378183;32796037) VTP54690.1
Alteromonas macleodii MIT1002 275 nan RNA recognition motif (RRM) domain (RRM) (PDB:1HL6) VTP54688.1
Alteromonas macleodii MIT1002 276 K19577 nan Predicted arabinose efflux permease AraJ, MFS family (AraJ) (PDB:4LDS) VTP54686.1
Alteromonas macleodii MIT1002 277 1.34872E-5 K23779 nan Transcriptional regulator, contains XRE-family HTH domain (HipB) (PDB:1ADR) VTP54684.1
Alteromonas macleodii MIT1002 278 nan Predicted branched-chain amino acid permease (azaleucine resistance) (AzlC) VTP54682.1
Alteromonas macleodii MIT1002 279 nan VTP54680.1
Alteromonas macleodii MIT1002 280 K07304 nan Peptide methionine sulfoxide reductase MsrA (MsrA) (PDB:1FF3) VTP54678.1
Alteromonas macleodii MIT1002 281 K04063 nan Organic hydroperoxide reductase OsmC/OhrA (OsmC) (PDB:1QWI) VTP54676.1
Alteromonas macleodii MIT1002 282 K04565 nan Cu/Zn superoxide dismutase (SodC) (PDB:1ESO) VTP54674.1
Alteromonas macleodii MIT1002 283 9.35789E-5 1.92663E-5 K00799 nan Glutathione S-transferase (GstA) (PDB:1A0F) VTP54672.1
Alteromonas macleodii MIT1002 284 5.9627E-4 7.83888E-4 4.0006E-4 7.34E-4 nan Uncharacterized conserved protein, DUF885 family (PDB:3IUK) VTP54670.1
Alteromonas macleodii MIT1002 285 7.92223E-6 3.16889E-5 nan Catechol 2,3-dioxygenase or related enzyme, vicinal oxygen chelate (VOC) family (GloA) (PDB:3R4Q) (PUBMED:11830595) VTP54668.1
Alteromonas macleodii MIT1002 286 5.05384E-6 1.13711E-5 3.79038E-6 1.26346E-6 K00219 nan NADPH-dependent glutamate synthase beta chain or related oxidoreductase (GltD) (PDB:1H7X)!!!2,4-dienoyl-CoA reductase or related NADH-dependent reductase, Old Yellow Enzyme (OYE) family (FadH) (PDB:1BWK) VTP54666.1
Alteromonas macleodii MIT1002 287 nan VTP54665.1
Alteromonas macleodii MIT1002 288 K02221 nan Cytochrome b6 maturation protein CCB3/Ycf19 and related maturases, YggT family (Ycf19) VTP54663.1
Alteromonas macleodii MIT1002 289 2.12594E-4 8.1065E-4 3.48955E-4 2.06152E-4 K00286 Proline biosynthesis, glutamate => proline Pyrroline-5-carboxylate reductase (ProC) (PDB:3GT0) (PUBMED:22125496;26507882) VTP54661.1
Alteromonas macleodii MIT1002 290 1.79988E-5 8.61369E-5 9.8993E-5 K06997 nan Pyridoxal 5'-phosphate homeostasis protein YggS, UPF0001 family (YggS) (PDB:3SY1) (PUBMED:26872910) VTP54659.1
Alteromonas macleodii MIT1002 291 1.2671E-5 8.93728E-4 7.85603E-5 1.62189E-4 K02669 nan Type IV pilus assembly protein PilT, pilus retraction ATPase (PilT) (PDB:5FL3) VTP54657.1
Alteromonas macleodii MIT1002 292 9.50667E-6 2.98668E-4 2.37667E-5 3.44617E-5 K02670 nan Type IV pilus assembly protein, ATPase PilU (PilU) VTP54655.1
Alteromonas macleodii MIT1002 293 nan VTP54653.1
Alteromonas macleodii MIT1002 294 K07447 nan YqgF/RuvX protein, pre-16S rRNA maturation RNase/Holliday junction resolvase/anti-termination factor (YqgF) (PDB:1IV0) (PUBMED:25545592;26817626) VTP54651.1
Alteromonas macleodii MIT1002 295 K07735 nan Putative transcriptional regulator, AlgH/UPF0301 family (AlgH) (PDB:2AJ2) VTP54649.1
Alteromonas macleodii MIT1002 296 2.26546E-4 3.8559E-4 2.09902E-4 1.62281E-4 K01920 Glutathione biosynthesis, glutamate => glutathione Glutathione synthase, LysX or RimK-type ligase, ATP-grasp superfamily (LysX) (PDB:1GLV) VTP54647.1
Alteromonas macleodii MIT1002 297 2.49518E-4 7.14637E-5 2.82221E-4 1.10829E-4 K09761 nan 16S rRNA U1498 N3-methylase RsmE (RsmE) (PDB:1NXZ) VTP54645.1
Alteromonas macleodii MIT1002 298 0.008747611 0.002365917 0.003855607 0.008746565 K03442 nan Small-conductance mechanosensitive channel (MscS) (PDB:2OAU) VTP54643.1
Alteromonas macleodii MIT1002 299 2.15694E-5 7.30041E-5 1.52645E-4 1.32735E-5 K23010 nan Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains (BepA) (PDB:6AIT) (PUBMED:24003122) VTP54641.1
Alteromonas macleodii MIT1002 300 0.001690828 8.09995E-4 6.2142E-4 0.001801238 nan DNA-binding beta-propeller fold protein YncE (YncE) (PDB:3VGZ) (PUBMED:22120742;28628661) VTP54639.1
Alteromonas macleodii MIT1002 301 7.25752E-4 8.19802E-4 6.84214E-4 5.70178E-4 K16872 nan 3-oxoacyl-[acyl-carrier-protein] synthase III (FabH) (PDB:1UB7) VTP54636.1
Alteromonas macleodii MIT1002 302 1.27445E-6 5.09778E-6 3.18612E-6 nan Signal transduction histidine kinase (BaeS) (PDB:1JOY) VTP54634.1
Alteromonas macleodii MIT1002 303 5.1442E-5 5.20891E-4 1.74709E-4 7.18247E-5 K02481 nan DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains (AtoC) (PDB:1ZY2) VTP54632.1
Alteromonas macleodii MIT1002 304 nan VTP54630.1
Alteromonas macleodii MIT1002 305 1.29634E-4 2.88994E-5 3.09637E-6 1.1952E-4 nan GGDEF domain, diguanylate cyclase (c-di-GMP synthetase) or its enzymatically inactive variants (GGDEF) (PDB:6D9M)!!!ATP-, maltotriose- and DNA-dependent transcriptional regulator MalT (MalT) VTP54628.1
Alteromonas macleodii MIT1002 306 nan VTP54626.1
Alteromonas macleodii MIT1002 307 1.52271E-5 K03496 nan ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ (ParA) (PDB:6NOO) VTP54624.1
Alteromonas macleodii MIT1002 308 7.98343E-5 3.1457E-4 5.19518E-4 9.29413E-5 K24136 nan Peroxiredoxin (AHP1) (PDB:1H4O)!!!Glutaredoxin (GrxC) (PDB:1AAZ) VTP54622.1
Alteromonas macleodii MIT1002 309 2.34661E-4 1.83506E-4 1.153E-4 1.9122E-4 K03928 nan Lysophospholipase, alpha-beta hydrolase superfamily (PldB) (PDB:5O7G) VTP54620.1
Alteromonas macleodii MIT1002 310 nan VTP54618.1
Alteromonas macleodii MIT1002 311 1.30139E-5 1.85913E-6 K15725 nan Outer membrane protein TolC (TolC) (PDB:1EK9) VTP54616.1
Alteromonas macleodii MIT1002 312 K07798 nan Multidrug efflux pump subunit AcrA (membrane-fusion protein) (AcrA) (PDB:1T5E)!!!Periplasmic Cu and Ag efflux protein CusF (CusF) VTP54614.1
Alteromonas macleodii MIT1002 313 8.0602E-7 6.44815E-6 K07787 nan Cu/Ag efflux pump CusA (CusA) (PDB:3K07) VTP54612.1
Alteromonas macleodii MIT1002 314 3.46088E-4 6.34857E-4 0.001126054 7.07412E-5 K01273 nan Zn-dependent dipeptidase, microsomal dipeptidase homolog (PDB:1ITQ) (PUBMED:14499931) VTP54610.1
Alteromonas macleodii MIT1002 315 0.005611692 0.005237274 0.006874638 0.011213651 nan VTP54608.1
Alteromonas macleodii MIT1002 316 1.28375E-5 nan VTP54606.1
Alteromonas macleodii MIT1002 317 1.09921E-4 7.32807E-5 1.73559E-4 3.76045E-4 K03925 nan MraZ, DNA-binding transcriptional regulator and inhibitor of RsmH methyltransferase activity (MraZ) (PDB:1N0E) VTP54604.1
Alteromonas macleodii MIT1002 318 4.49517E-5 1.27363E-4 3.69915E-4 2.80948E-5 K03438 nan 16S rRNA C1402 N4-methylase RsmH (RmsH) (PDB:1M6Y) VTP54602.1
Alteromonas macleodii MIT1002 319 K03586 nan Cell division protein FtsL, interacts with FtsB and FtsQ (FtsL) VTP54600.1
Alteromonas macleodii MIT1002 320 2.17238E-4 1.16059E-4 8.92758E-5 1.48793E-5 K03587 nan Cell division protein FtsI, peptidoglycan transpeptidase (Penicillin-binding protein 2) (FtsI) (PDB:6HZQ) VTP54598.1
Alteromonas macleodii MIT1002 321 1.68784E-5 2.14356E-4 6.39693E-4 5.14793E-5 K01928 nan UDP-N-acetylmuramyl tripeptide synthase (MurE) (PDB:1E8C) VTP54596.1
Alteromonas macleodii MIT1002 322 4.49996E-5 8.18744E-5 2.55623E-4 1.09687E-4 K01929 nan UDP-N-acetylmuramyl pentapeptide synthase (MurF) (PDB:4CVK) VTP54594.1
Alteromonas macleodii MIT1002 323 2.44269E-6 2.44269E-6 9.77075E-6 K01000 nan UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase (Rfe) (PDB:4J72) VTP54592.1
Alteromonas macleodii MIT1002 324 6.96529E-6 4.99179E-5 8.35837E-5 3.48264E-5 K01925 nan UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD) (PDB:1E0D) VTP54591.1
Alteromonas macleodii MIT1002 325 1.85521E-6 4.63802E-6 K03588 nan Peptodoglycan polymerase FtsW/RodA/SpoVE (FtsW) (PDB:6BAR) (PUBMED:30692671) VTP54589.1
Alteromonas macleodii MIT1002 326 6.06732E-5 2.83667E-5 9.61317E-5 1.15831E-4 K02563 nan UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase (MurG) (PDB:1F0K) VTP54587.1
Alteromonas macleodii MIT1002 327 3.38218E-5 3.74783E-5 1.18224E-4 4.75334E-5 K01924 nan UDP-N-acetylmuramate-alanine ligase MurC and related ligases, MurC/Mpl family (MurC) VTP54585.1
Alteromonas macleodii MIT1002 328 1.27289E-4 7.84349E-4 9.59147E-4 4.36994E-4 K01921 nan D-alanine-D-alanine ligase or related ATP-grasp enzyme (DdlA) (PDB:1E4E) VTP54583.1
Alteromonas macleodii MIT1002 329 2.74802E-5 3.43503E-6 K03589 nan Cell division septal protein FtsQ (FtsQ) (PDB:1YR1) VTP54581.1
Alteromonas macleodii MIT1002 330 1.6412E-4 0.001216208 0.00100407 7.74015E-5 K03590 nan Cell division ATPase FtsA (FtsA) (PDB:3WT0) VTP54579.1
Alteromonas macleodii MIT1002 331 4.69147E-4 0.001311497 0.002867765 0.006110243 K03531 nan Cell division GTPase FtsZ (FtsZ) (PDB:1FSZ) VTP54577.1
Alteromonas macleodii MIT1002 332 K02535 KDO2-lipid A biosynthesis, Raetz pathway, LpxL-LpxM type UDP-3-O-acyl-N-acetylglucosamine deacetylase (LpxC) (PDB:1P42) VTP54575.1
Alteromonas macleodii MIT1002 333 nan Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain (NlpD) (PDB:2GU1) VTP54573.1
Alteromonas macleodii MIT1002 334 0.005434139 0.004566146 0.003866162 0.001560829 K03070 nan Preprotein translocase subunit SecA (ATPase, RNA helicase) (SecA) (PDB:2FSF) VTP54571.1
Alteromonas macleodii MIT1002 335 4.5007E-5 1.41945E-4 K03574 nan ADP-ribose pyrophosphatase YjhB, NUDIX family (YjhB) (PDB:3GZ5) VTP54569.1
Alteromonas macleodii MIT1002 336 1.86992E-4 9.80445E-5 1.26346E-4 7.58075E-5 K01437 nan Succinylglutamate desuccinylase (AstE) (PDB:1YW4) VTP54567.1
Alteromonas macleodii MIT1002 337 K09862 nan Endogenous inhibitor of DNA gyrase, YacG/DUF329 family (YacG) (PDB:1LV3) (PUBMED:18586829) VTP54565.1
Alteromonas macleodii MIT1002 338 3.51747E-6 K18778 nan Cell division protein ZapD, interacts with FtsZ (ZapD) (PDB:2OEZ) VTP54563.1
Alteromonas macleodii MIT1002 339 K00859 Coenzyme A biosynthesis, pantothenate => CoA Dephospho-CoA kinase (CoaE) (PDB:1JJV) VTP54561.1
Alteromonas macleodii MIT1002 340 K02654 nan Prepilin signal peptidase PulO (type II secretory pathway) or related peptidase (PulO) VTP54559.1
Alteromonas macleodii MIT1002 341 4.38587E-6 7.09049E-5 2.19294E-6 2.74117E-5 K02653 nan Type II secretory pathway, component PulF (PulF) (PDB:2VMA) VTP54557.1
Alteromonas macleodii MIT1002 342 0.003421797 0.02216942 0.001126689 0.049186558 K02650 nan Type IV pilus assembly protein, major pilin PilA (PilA) (PDB:1AY2) VTP54555.1
Alteromonas macleodii MIT1002 343 7.58429E-5 1.52711E-4 1.24014E-4 2.76724E-5 K00767 NAD biosynthesis, aspartate => quinolinate => NAD Nicotinate-nucleotide pyrophosphorylase (NadC) (PDB:1O4U) VTP54553.1
Alteromonas macleodii MIT1002 344 1.87462E-5 4.60134E-5 4.60134E-5 K06985 nan Predicted aspartyl protease (PDB:5C9F) VTP54551.1
Alteromonas macleodii MIT1002 345 1.96507E-5 6.22272E-5 3.19324E-5 4.91267E-6 K03806 nan N-acetyl-anhydromuramyl-L-alanine amidase AmpD (AmpD) (PDB:2Y28) VTP54549.1
Alteromonas macleodii MIT1002 346 3.36113E-4 3.38068E-4 1.6024E-4 6.17023E-4 K03807 nan Membrane protein AmpE required for beta-lactamase induction (AmpE) VTP54547.1
Alteromonas macleodii MIT1002 347 2.29298E-4 3.42764E-5 K05799 nan DNA-binding transcriptional regulator, FadR family (FadR) (PDB:1E2X) VTP54545.1
Alteromonas macleodii MIT1002 348 0.003298039 0.0350987 0.01568715 0.01741858 K00163 Pyruvate oxidation, pyruvate => acetyl-CoA Pyruvate dehydrogenase complex, dehydrogenase (E1) component (AceE) (PDB:1L8A) VTP54543.1
Alteromonas macleodii MIT1002 349 0.001700797 0.016228598 0.003545794 0.018520147 K00627 Pyruvate oxidation, pyruvate => acetyl-CoA Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component (AceF) (PDB:1B5S) VTP54541.1
Alteromonas macleodii MIT1002 350 0.04198406 0.05513553 0.05849931 0.08839408 K00382 Pyruvate oxidation, pyruvate => acetyl-CoA Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex or glutathione oxidoreductase (Lpd) (PDB:6QKG) VTP54539.1
Alteromonas macleodii MIT1002 351 2.44269E-6 2.117E-5 4.88538E-6 3.05336E-5 nan DNA-binding transcriptional regulator, LysR family (LysR) (PDB:2FYI) VTP54537.1
Alteromonas macleodii MIT1002 352 2.0691E-6 8.2764E-6 K18298 Multidrug resistance, efflux pump MexAB-OprM Multidrug efflux pump subunit AcrA (membrane-fusion protein) (AcrA) (PDB:1T5E) VTP54535.1
Alteromonas macleodii MIT1002 353 nan Multidrug efflux pump subunit AcrB (AcrB) (PDB:1IWG) VTP54533.1
Alteromonas macleodii MIT1002 354 8.12297E-4 5.34079E-5 6.63251E-4 0.004644625 K09797 nan Outer membrane channel-forming protein BP26/OMP28, SIMPL family (SIMPL) (PDB:4HVZ) (PUBMED:23353825;32703422) VTP54531.1
Alteromonas macleodii MIT1002 355 3.20937E-6 nan HD-like signal output (HDOD) domain, no enzymatic activity (HDOD) (PDB:1VQR) VTP54529.1
Alteromonas macleodii MIT1002 356 K07283 nan Putative salt-induced outer membrane protein YdiY (YdiY) VTP54527.1
Alteromonas macleodii MIT1002 357 0.004146752 0.002261231 0.001262055 0.005550134 K07283 nan Putative salt-induced outer membrane protein YdiY (YdiY) VTP54525.1
Alteromonas macleodii MIT1002 358 0.00609107 0.010874198 0.013595435 0.010411581 K00058 Serine biosynthesis, glycerate-3P => serine Phosphoglycerate dehydrogenase or related dehydrogenase (SerA) (PDB:3OET) VTP54523.1
Alteromonas macleodii MIT1002 359 0.0039827 9.90969E-4 0.001671336 0.003325864 K01807 Pentose phosphate pathway (Pentose phosphate cycle) Ribose 5-phosphate isomerase (RpiA) (PDB:1KS2) VTP54521.1
Alteromonas macleodii MIT1002 360 K01934 nan 5-formyltetrahydrofolate cyclo-ligase (FAU1) (PDB:1SBQ) VTP54519.1
Alteromonas macleodii MIT1002 361 8.11223E-6 2.70408E-5 1.56837E-5 1.4602E-5 nan Signal transduction histidine kinase (BaeS) (PDB:1JOY)!!!CheY-like REC (receiver) domain, includes chemotaxis protein CheY  and sporulation regulator Spo0F (CheY) (PDB:6QRJ)!!!GAF domain (GAF) VTP54517.1
Alteromonas macleodii MIT1002 362 3.27773E-4 2.86567E-4 3.05297E-4 1.37665E-4 K01239 nan Inosine-uridine nucleoside N-ribohydrolase (URH1) (PDB:1EZR) VTP54515.1
Alteromonas macleodii MIT1002 363 4.81979E-5 3.81649E-4 2.96073E-4 1.44594E-4 K00852 nan Sugar or nucleoside kinase, ribokinase family (RbsK) (PDB:2QCV) VTP54513.1
Alteromonas macleodii MIT1002 364 4.67749E-6 K09895 nan Uncharacterized conserved protein YgfB, UPF0149 family (YgfB) (PDB:1IZM) VTP54509.1
Alteromonas macleodii MIT1002 365 7.74536E-5 5.00779E-5 8.07923E-5 2.00311E-6 K01262 nan Xaa-Pro aminopeptidase (PepP) (PDB:1A16) VTP54507.1
Alteromonas macleodii MIT1002 366 1.94325E-4 1.4787E-4 3.99118E-5 1.7764E-4 K03185 Ubiquinone biosynthesis, prokaryotes, chorismate (+ polyprenyl-PP) => ubiquinol 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases (UbiH) (PDB:1BF3) VTP54505.1
Alteromonas macleodii MIT1002 367 5.78729E-5 5.78729E-4 9.99623E-5 3.60766E-5 K18800 Ubiquinone biosynthesis, prokaryotes, chorismate (+ polyprenyl-PP) => ubiquinol 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases (UbiH) (PDB:1BF3) VTP54503.1
Alteromonas macleodii MIT1002 368 1.24292E-5 2.33048E-5 6.2664E-5 7.76828E-6 K19701 nan Zn-dependent amino- or carboxypeptidase, M28 family (Iap) (PDB:1AMP) VTP54501.1
Alteromonas macleodii MIT1002 369 nan Permease of the drug/metabolite transporter (DMT) superfamily (RhaT) (PDB:5I20) VTP54500.1
Alteromonas macleodii MIT1002 370 6.14942E-6 8.19923E-6 6.14942E-6 2.04981E-6 K01271 nan Xaa-Pro aminopeptidase (PepP) (PDB:1A16) VTP54498.1
Alteromonas macleodii MIT1002 371 nan nanoRNase/pAp phosphatase, hydrolyzes c-di-AMP and oligoRNAs (NrnA) (PDB:5O4Z) VTP54496.1
Alteromonas macleodii MIT1002 372 K07483 nan Transposase InsE and inactivated derivatives (InsE) (PDB:2JN6) (PUBMED:23818957) VTP54494.1
Alteromonas macleodii MIT1002 373 2.20265E-5 4.23587E-5 5.16777E-5 7.75165E-5 nan CDP-glycerol glycerophosphotransferase, TagB/SpsB family (TagB) VTP50028.1
Alteromonas macleodii MIT1002 374 3.40348E-4 1.7913E-4 3.68031E-4 1.95415E-5 K01726 nan Carbonic anhydrase or acetyltransferase, isoleucine patch superfamily (PaaY) (PDB:6IVE) VTP50027.1
Alteromonas macleodii MIT1002 375 3.4084E-6 2.39724E-4 5.68067E-5 3.4084E-5 K00014 Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate Shikimate 5-dehydrogenase (AroE) (PDB:1NPD) VTP50026.1
Alteromonas macleodii MIT1002 376 K06886 nan Truncated hemoglobin YjbI (YjbI) (PDB:1DLW) VTP50025.1
Alteromonas macleodii MIT1002 377 0.006018089 K07275 nan Outer membrane protein OmpW (OmpW) (PDB:2F1T) VTP50024.1
Alteromonas macleodii MIT1002 378 9.07735E-5 9.17189E-5 1.38051E-4 7.09167E-5 K00228 Heme biosynthesis, animals and fungi, glycine => heme Coproporphyrinogen-III oxidase HemH, oxygen-dependent (HemF) (PDB:3E8J) VTP50023.1
Alteromonas macleodii MIT1002 379 4.37496E-6 4.37496E-6 K07566 nan tRNA A37 threonylcarbamoyladenosine synthetase subunit TsaC/SUA5/YrdC (TsaC) (PDB:1HRU) VTP50022.1
Alteromonas macleodii MIT1002 380 K07479 nan DNA topoisomerase I, ssDNA-binding Zn-finger and Zn-ribbon domains (YrdD) (PDB:1YUA) VTP50021.1
Alteromonas macleodii MIT1002 381 K03747 nan Uncharacterized conserved protein Smg, DUF494 family (Smg) VTP50020.1
Alteromonas macleodii MIT1002 382 K04096 nan Predicted Rossmann fold nucleotide-binding protein DprA/Smf involved in DNA uptake (Smf) (PDB:3MAJ) VTP50019.1
Alteromonas macleodii MIT1002 383 8.86757E-5 6.32225E-5 3.12007E-5 2.09373E-5 nan Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain (XkdP) (PDB:5FIM) (PUBMED:27112601) VTP50018.1
Alteromonas macleodii MIT1002 384 1.30084E-4 7.52752E-4 4.9085E-4 6.5042E-5 K01462 nan Peptide deformylase (Def) (PDB:1BS4) VTP50017.1
Alteromonas macleodii MIT1002 385 4.45249E-5 5.27806E-4 3.64548E-4 6.95701E-6 K00604 nan Methionyl-tRNA formyltransferase (Fmt) (PDB:1FMT) VTP50016.1
Alteromonas macleodii MIT1002 386 8.01246E-6 5.74226E-5 9.4814E-5 1.30202E-5 K03500 nan 16S rRNA C967 or C1407 C5-methylase, RsmB/RsmF family (RsmB) (PDB:2FRX) VTP50015.1
Alteromonas macleodii MIT1002 387 1.51989E-4 3.19305E-5 9.06826E-5 8.52544E-5 K03499 nan Trk/Ktr K+ transport system regulatory component TrkA/KtrA/KtrC, RCK domain (TrkA) (PDB:4XTT) (PUBMED:23815639;25957408;31868587;32095817) VTP50014.1
Alteromonas macleodii MIT1002 388 K03498 nan Trk-type K+ transport system, membrane component (TrkG) (PDB:3PJZ) VTP50013.1
Alteromonas macleodii MIT1002 389 1.74253E-4 7.96969E-4 6.42302E-4 5.99753E-4 nan Glyoxalase ElbB, DJ-1 superfamily (ElbB) (PDB:1VHQ) (PUBMED:26678554) VTP50012.1
Alteromonas macleodii MIT1002 390 7.06961E-4 5.45271E-4 0.001369165 2.43008E-4 K02335 nan 5'-3' exonuclease Xni/ExoIX (flap endonuclease) (ExoIX) (PDB:3ZDA) (PUBMED:19000038;23821668)!!!DNA polymerase I, 3'-5' exonuclease and polymerase domains (PolA) (PDB:1D8Y) VTP50011.1
Alteromonas macleodii MIT1002 391 1.66705E-5 1.04191E-5 7.08493E-5 4.16762E-6 K03978 nan GTP-binding protein EngB required for normal cell division (EngB) (PDB:5UCV) VTP50010.1
Alteromonas macleodii MIT1002 392 0.001281526 9.75659E-4 0.001329672 9.02733E-4 K17230 nan Cytochrome c553 (CytC553) (PDB:6Q2U) VTP50009.1
Alteromonas macleodii MIT1002 393 nan 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase (UbiG) (PDB:1BHJ) VTP50008.1
Alteromonas macleodii MIT1002 394 1.89564E-4 4.40561E-4 1.19355E-4 3.42269E-5 K09894 nan Ribosome assembly protein YihI, activator of Der GTPase (YihI) (PUBMED:20434458) VTP50007.1
Alteromonas macleodii MIT1002 395 4.21483E-5 6.51383E-5 1.43687E-4 2.44269E-4 nan VTP50006.1
Alteromonas macleodii MIT1002 396 K01246 nan 3-methyladenine DNA glycosylase Tag (Tag) (PDB:1LMZ) VTP50005.1
Alteromonas macleodii MIT1002 397 0.001789897 0.002111261 0.00224078 0.002433598 K01878 nan Glycyl-tRNA synthetase, alpha subunit (GlyQ) (PDB:1J5W) VTP50004.1
Alteromonas macleodii MIT1002 398 0.003081598 0.002531358 0.004699278 0.004128071 K01879 nan Glycyl-tRNA synthetase, beta subunit (GlyS) VTP50003.1
Alteromonas macleodii MIT1002 399 1.71486E-4 1.21636E-4 1.5354E-4 3.88836E-4 nan VTP50002.1
Alteromonas macleodii MIT1002 400 5.96792E-4 0.002924315 0.00392224 2.68938E-4 K02470 nan DNA gyrase/topoisomerase IV, subunit B (GyrB) (PDB:1EI1) VTP50001.1
Alteromonas macleodii MIT1002 401 K03629 nan Recombinational DNA repair ATPase RecF (RecF) (PDB:5Z67) VTP50000.1
Alteromonas macleodii MIT1002 402 9.29823E-4 0.003844229 0.001048353 0.0018176 K02338 nan DNA polymerase III sliding clamp (beta) subunit, PCNA homolog (DnaN) (PDB:1JQJ) VTP49999.1
Alteromonas macleodii MIT1002 403 2.98653E-5 1.29416E-4 1.42137E-4 6.13898E-5 K02313 nan Chromosomal replication initiation ATPase DnaA (DnaA) (PDB:1L8Q) VTP49998.1
Alteromonas macleodii MIT1002 404 3.39756E-4 1.13252E-4 K02914 nan Ribosomal protein L34 (RpmH) (PDB:6SPB) VTP56770.1
Alteromonas macleodii MIT1002 405 K08998 nan Membrane-anchored protein YidD, putatitve component of membrane protein insertase Oxa1/YidC/SpoIIIJ (YidD) VTP56766.1
Alteromonas macleodii MIT1002 406 0.004678277 0.00185538 0.001791658 0.003670403 K03217 nan Membrane protein insertase Oxa1/YidC/SpoIIIJ (YidC) (PDB:3WO6) VTP56764.1
Alteromonas macleodii MIT1002 407 7.51128E-5 5.22125E-4 6.88838E-4 1.37401E-4 K09767 nan Cyclic di-GMP-binding protein YajQ, UPF0234 family (YajQ) (PDB:1IN0) (PUBMED:25329577) VTP56762.1
Alteromonas macleodii MIT1002 408 3.61645E-5 1.90339E-5 7.61357E-6 K03650 nan tRNA U34 5-carboxymethylaminomethyl modifying GTPase MnmE/TrmE (MnmE) VTP56760.1
Alteromonas macleodii MIT1002 409 K06205 nan Flavodoxin (FldA) (PDB:1AG9) VTP56758.1
Alteromonas macleodii MIT1002 410 1.58445E-5 3.43296E-5 1.58445E-5 K02317 nan VTP56756.1
Alteromonas macleodii MIT1002 411 3.83724E-5 2.02521E-5 3.1977E-5 K02315 nan DNA replication protein DnaC (DnaC) (PDB:2QGZ) VTP56754.1
Alteromonas macleodii MIT1002 412 1.80597E-5 2.36165E-4 2.24125E-4 9.02986E-6 K03495 nan tRNA U34 5-carboxymethylaminomethyl modifying enzyme MnmG/GidA (MnmG) (PDB:2ZXH) VTP56752.1
Alteromonas macleodii MIT1002 413 1.66705E-5 K03501 nan 16S rRNA G527 N7-methylase RsmG (former glucose-inhibited division protein B) (RsmG) (PDB:1XDZ) (PUBMED:15375115;22031445) VTP56750.1
Alteromonas macleodii MIT1002 414 8.32734E-5 9.54869E-5 7.32806E-5 6.82842E-5 K03496 nan ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ (ParA) (PDB:6NOO) VTP56748.1
Alteromonas macleodii MIT1002 415 2.74049E-4 0.003089832 0.002105061 2.78567E-4 K03497 nan Chromosome segregation protein Spo0J, contains ParB-like nuclease domain (Spo0J) (PDB:1R71) VTP56746.1
Alteromonas macleodii MIT1002 416 nan FoF1-type ATP synthase accessory protein AtpI (AtpI) (PUBMED:18083842;23123906) VTP56744.1
Alteromonas macleodii MIT1002 417 0.001414819 2.03175E-4 2.93652E-4 1.15873E-4 K02108 F-type ATPase, prokaryotes and chloroplasts FoF1-type ATP synthase, membrane subunit a (AtpB) (PUBMED:22931285) VTP56742.1
Alteromonas macleodii MIT1002 418 2.65015E-4 3.89492E-4 1.36523E-4 2.46946E-4 K02110 F-type ATPase, prokaryotes and chloroplasts FoF1-type ATP synthase, membrane subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K (AtpE) (PDB:1C17) VTP56740.1
Alteromonas macleodii MIT1002 419 0.05404915 0.016826356 0.029889096 0.059292473 K02109 F-type ATPase, prokaryotes and chloroplasts FoF1-type ATP synthase, membrane subunit b or b' (AtpF) (PDB:1B9U) VTP56738.1
Alteromonas macleodii MIT1002 420 0.001856442 0.001871347 0.001877971 0.012162098 K02113 F-type ATPase, prokaryotes and chloroplasts FoF1-type ATP synthase, delta subunit (AtpH) (PDB:1ABV) VTP56736.1
Alteromonas macleodii MIT1002 421 0.10216546 0.04897316 0.06906662 0.1761623 K02111 F-type ATPase, prokaryotes and chloroplasts FoF1-type ATP synthase, alpha subunit (AtpA) (PDB:3OAA) VTP56734.1
Alteromonas macleodii MIT1002 422 0.010278759 0.006530686 0.005617497 0.015166012 K02115 F-type ATPase, prokaryotes and chloroplasts FoF1-type ATP synthase, gamma subunit (AtpG) (PDB:3OAA) (PUBMED:15326535) VTP56732.1
Alteromonas macleodii MIT1002 423 0.12658693 0.055000834 0.056053787 0.18113156 K02112 F-type ATPase, prokaryotes and chloroplasts FoF1-type ATP synthase, beta subunit (AtpD) (PDB:3OAA) VTP56730.1
Alteromonas macleodii MIT1002 424 0.014228207 9.86347E-4 0.011566569 5.19918E-4 K02114 F-type ATPase, prokaryotes and chloroplasts FoF1-type ATP synthase, epsilon subunit (AtpC) (PDB:3OAA) (PUBMED:29149348;30304218) VTP56728.1
Alteromonas macleodii MIT1002 425 2.74802E-6 nan VTP56726.1
Alteromonas macleodii MIT1002 426 5.00812E-5 4.41893E-6 2.20947E-5 K00799 nan Glutathione S-transferase (GstA) (PDB:1A0F) VTP56724.1
Alteromonas macleodii MIT1002 427 K05812 nan tRNA U47 aminocarboxypropyltransferaseTapT/TuaA/ YfiP, DTW domain (TapT) (PUBMED:31804502;31863583) VTP56722.1
Alteromonas macleodii MIT1002 428 K07443 nan Alkylated DNA nucleotide flippase Atl1, participates in nucleotide excision repair, Ada-like DNA-binding domain (Atl1) (PDB:2KIF) (PUBMED:19516334) VTP56720.1
Alteromonas macleodii MIT1002 429 2.13047E-5 8.81571E-6 5.50982E-6 nan HD-GYP domain, c-di-GMP phosphodiesterase class II (or its inactivated variant) (HDGYP) (PDB:5Z7C) (PUBMED:23475961) VTP56718.1
Alteromonas macleodii MIT1002 430 0.001127076 0.001872956 0.001059644 8.77303E-4 K03286 nan Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins (OmpA) (PDB:1OAP) VTP56716.1
Alteromonas macleodii MIT1002 431 nan Ketosteroid isomerase homolog YybH (YybH) (PDB:2GXF) VTP56714.1
Alteromonas macleodii MIT1002 432 nan Uncharacterized membrane protein, DUF1624 family VTP56712.1
Alteromonas macleodii MIT1002 433 2.64074E-6 4.22519E-5 1.71649E-5 1.0563E-5 K02529 nan DNA-binding transcriptional regulator, LacI/PurR family (PurR) (PDB:1BDH) VTP56710.1
Alteromonas macleodii MIT1002 434 6.57471E-6 6.57471E-6 1.64368E-6 4.1092E-6 K03292 nan Na+/melibiose symporter or related transporter (MelB) (PDB:4M64) VTP56708.1
Alteromonas macleodii MIT1002 435 K05350 nan Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase (BglB) (PDB:4HZ6) VTP56706.1
Alteromonas macleodii MIT1002 436 1.30344E-4 3.86225E-4 7.29805E-5 8.49185E-4 K02014 nan Outer membrane receptor for ferrienterochelin and colicins (FepA) (PDB:2HDF) (PUBMED:16468998) VTP56704.1
Alteromonas macleodii MIT1002 437 K14266 Rebeccamycin biosynthesis, tryptophan => rebeccamycin Glycine/D-amino acid oxidase (deaminating) (DadA) (PDB:3AWI) VTP56702.1
Alteromonas macleodii MIT1002 438 4.38806E-6 1.40418E-5 4.38806E-6 1.1409E-5 K14266 Rebeccamycin biosynthesis, tryptophan => rebeccamycin 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases (UbiH) (PDB:1BF3) VTP56700.1
Alteromonas macleodii MIT1002 439 9.88056E-6 5.92832E-6 3.22764E-5 K07154 nan Serine/threonine protein kinase HipA, toxin component of the HipAB toxin-antitoxin module (HipA) (PDB:2WIU) VTP56698.1
Alteromonas macleodii MIT1002 440 3.82334E-5 nan VTP56696.1
Alteromonas macleodii MIT1002 441 nan VTP56694.1
Alteromonas macleodii MIT1002 442 8.24407E-5 3.66403E-5 9.16008E-6 2.29002E-4 nan VTP56692.1
Alteromonas macleodii MIT1002 443 5.52367E-5 1.10473E-5 3.97704E-5 K01154 nan VTP56690.1
Alteromonas macleodii MIT1002 444 8.38307E-5 2.65179E-4 3.14793E-4 8.55417E-6 K03427 nan Type I restriction-modification system, DNA methylase subunit (HsdM) (PDB:2AR0) (PUBMED:26872910) VTP56688.1
Alteromonas macleodii MIT1002 445 2.73379E-5 1.36689E-5 K01154 nan Restriction endonuclease S subunit (HsdS) (PDB:1YDX) VTP56686.1
Alteromonas macleodii MIT1002 446 nan VTP56684.1
Alteromonas macleodii MIT1002 447 5.16888E-4 1.9744E-4 5.29544E-4 2.80972E-4 K06915 nan Archaeal DNA helicase HerA or a related bacterial ATPase, contains HAS-barrel and ATPase domains (HerA) (PDB:4D2I) VTP56682.1
Alteromonas macleodii MIT1002 448 3.73582E-4 7.95618E-5 5.89236E-5 7.76176E-5 nan Omega-amidase YafV/Nit2, hydrolyzes alpha-ketoglutaramate (Nit2) (PUBMED:28373563) VTP56680.1
Alteromonas macleodii MIT1002 449 8.04545E-7 1.82363E-5 2.17227E-5 3.21818E-6 K01153 nan Type I site-specific restriction-modification system, R (restriction) subunit and related helicases ... (PDB:2W00) VTP56678.1
Alteromonas macleodii MIT1002 450 nan UTP pyrophosphatase, metal-dependent hydrolase family (YgjP) (PDB:4JIU) (PUBMED:27941785) VTP56676.1
Alteromonas macleodii MIT1002 451 nan VTP56674.1
Alteromonas macleodii MIT1002 452 nan Site-specific recombinase XerC (XerC) VTP56672.1
Alteromonas macleodii MIT1002 453 nan VTP56670.1
Alteromonas macleodii MIT1002 454 nan VTP56666.1
Alteromonas macleodii MIT1002 455 nan VTP56664.1
Alteromonas macleodii MIT1002 456 nan VTP56662.1
Alteromonas macleodii MIT1002 457 nan VTP56660.1
Alteromonas macleodii MIT1002 458 K06919 nan Predicted ATPase domain of Cch-like helicases, DUF927 family (PDB:5DGK) VTP56658.1
Alteromonas macleodii MIT1002 459 K07733 nan VTP56656.1
Alteromonas macleodii MIT1002 460 K07733 nan DNA-binding transcriptional regulator AlpA (AlpA) VTP56654.1
Alteromonas macleodii MIT1002 461 7.23776E-4 6.75154E-4 9.72442E-5 5.5221E-4 nan VTP56652.1
Alteromonas macleodii MIT1002 462 nan Integrase/recombinase, includes phage integrase (FimB) VTP56650.1
Alteromonas macleodii MIT1002 463 2.89037E-4 0.001337946 4.18746E-4 2.40524E-4 nan Uncharacterized stationary-phase protein YicC, UPF0701 family (YicC) (PUBMED:1925027) VTP56648.1
Alteromonas macleodii MIT1002 464 4.46486E-4 6.62927E-4 8.66999E-4 4.17421E-4 K00989 nan Ribonuclease PH (Rph) (PDB:1UDO) VTP56646.1
Alteromonas macleodii MIT1002 465 6.2753E-4 9.02762E-4 0.001885342 6.70879E-4 K00762 Uridine monophosphate biosynthesis, glutamine (+ PRPP) => UMP Orotate phosphoribosyltransferase (PyrE) (PDB:4WML) VTP56644.1
Alteromonas macleodii MIT1002 466 K04085 nan Sulfur carrier protein TusA (tRNA thiolation, molybdenum cofactor biosynthesis) (TusA) (PDB:1DCJ) (PUBMED:23894086) VTP56642.1
Alteromonas macleodii MIT1002 467 nan VTP56640.1
Alteromonas macleodii MIT1002 468 nan VTP56638.1
Alteromonas macleodii MIT1002 469 K03975 nan Uncharacterized membrane protein YqaA, VTT domain (YgaA) VTP56636.1
Alteromonas macleodii MIT1002 470 4.00828E-4 4.41729E-4 5.47389E-4 0.001342569 nan Imidazolonepropionase or related amidohydrolase (HutI) (PDB:3OOQ) VTP56634.1
Alteromonas macleodii MIT1002 471 K09986 nan Uncharacterized conserved protein, DUF1285 family (PDB:2RA9) VTP56632.1
Alteromonas macleodii MIT1002 472 4.44808E-4 8.54769E-4 2.73649E-4 0.005173202 nan VTP56630.1
Alteromonas macleodii MIT1002 473 nan VTP56629.1
Alteromonas macleodii MIT1002 474 nan VTP56627.1
Alteromonas macleodii MIT1002 475 3.86535E-6 3.92977E-5 3.47882E-5 3.28555E-5 nan Predicted protein kinase regulating ubiquinone biosynthesis, AarF/ABC1/UbiB family (AarF) (PDB:4PED) VTP56625.1
Alteromonas macleodii MIT1002 476 nan VTP56623.1
Alteromonas macleodii MIT1002 477 nan VTP56621.1
Alteromonas macleodii MIT1002 478 0.003224704 0.002941591 9.70164E-4 0.003994687 nan Aminopeptidase N, contains DUF3458 domain (PepN) (PDB:6ATK) (PUBMED:24123841) VTP56619.1
Alteromonas macleodii MIT1002 479 2.04225E-5 7.20795E-5 9.29022E-5 1.56172E-5 K00931 Proline biosynthesis, glutamate => proline Glutamate 5-kinase (ProB) (PDB:2W21) VTP56617.1
Alteromonas macleodii MIT1002 480 K07107 nan Acyl-CoA thioesterase FadM (FadM) (PDB:2FUJ) VTP56615.1
Alteromonas macleodii MIT1002 481 1.23374E-4 4.37496E-5 1.48749E-4 6.56244E-6 K00018 Formaldehyde assimilation, serine pathway Lactate dehydrogenase or related 2-hydroxyacid dehydrogenase (LdhA) (PDB:1DXY) VTP56613.1
Alteromonas macleodii MIT1002 482 nan Permease of the drug/metabolite transporter (DMT) superfamily (RhaT) (PDB:5I20) VTP56611.1
Alteromonas macleodii MIT1002 483 nan VTP56609.1
Alteromonas macleodii MIT1002 484 K03088 nan DNA-directed RNA polymerase specialized sigma subunit, sigma24 family (RpoE) (PDB:2Q1Z) VTP56607.1
Alteromonas macleodii MIT1002 485 nan VTP56605.1
Alteromonas macleodii MIT1002 486 6.8168E-7 2.04504E-6 6.8168E-7 K09800 nan Autotransporter translocation and assembly protein TamB (TamB) (PDB:5VTG) VTP56603.1
Alteromonas macleodii MIT1002 487 3.68798E-5 1.43687E-6 3.59219E-6 K07278 nan Outer membrane translocation and assembly module TamA (TamA) (PDB:4BZA) VTP56601.1
Alteromonas macleodii MIT1002 488 nan Transposase VTP53646.1
Alteromonas macleodii MIT1002 489 nan DNA-binding transcriptional regulator LsrR, DeoR family (DeoR) (PDB:2GNP) (PUBMED:23974133;24893262) VTP52134.1
Alteromonas macleodii MIT1002 490 6.76438E-5 nan VTP52136.1
Alteromonas macleodii MIT1002 491 1.02593E-4 1.02593E-4 1.38745E-4 1.99323E-4 nan DNA-binding transcriptional regulator, LysR family (LysR) (PDB:2FYI) VTP52138.1
Alteromonas macleodii MIT1002 492 5.31161E-5 5.31161E-5 5.90179E-6 nan Acyl-CoA dehydratase PaaZ (MaoC) (PDB:5ZY8) VTP52140.1
Alteromonas macleodii MIT1002 493 K16348 nan Predicted small secreted protein VTP52142.1
Alteromonas macleodii MIT1002 494 K03442 nan Small-conductance mechanosensitive channel MscK (MscK) VTP52144.1
Alteromonas macleodii MIT1002 495 7.80791E-6 8.78391E-6 9.7599E-7 7.12474E-5 K02014 nan Outer membrane receptor for ferrienterochelin and colicins (FepA) (PDB:2HDF) (PUBMED:16468998) VTP52146.1
Alteromonas macleodii MIT1002 496 8.79367E-6 2.19842E-5 1.40699E-4 K01724 nan Pterin-4a-carbinolamine dehydratase (PhhB) (PDB:1DCH) VTP52148.1
Alteromonas macleodii MIT1002 497 1.58302E-6 7.9151E-7 K20974 nan Signal transduction histidine kinase (BaeS) (PDB:1JOY)!!!CheY-like REC (receiver) domain, includes chemotaxis protein CheY  and sporulation regulator Spo0F (CheY) (PDB:6QRJ)!!!HPt (histidine-containing phosphotransfer) domain (HPtr) (PDB:3IQT)!!!PAS domain (PAS) (PDB:2MWG)!!!MHYT domain, NO-binding membrane sensor (MHYT) VTP52150.1
Alteromonas macleodii MIT1002 498 1.84852E-5 1.24995E-4 1.10031E-4 6.60187E-6 K07814 nan Response regulator c-di-GMP phosphodiesterase, RpfG family, contains REC and HD-GYP domains (RpfG) VTP52152.1
Alteromonas macleodii MIT1002 499 2.31412E-5 K09748 nan Ribosome maturation factor RimP (RimP) (PDB:1IB8) VTP52154.1
Alteromonas macleodii MIT1002 500 0.001443834 0.004615207 0.005134352 0.003931549 K02600 nan Transcription antitermination factor NusA, contains S1 and KH domains (NusA) (PDB:1HH2) VTP52156.1
Alteromonas macleodii MIT1002 501 0.001120146 0.005209677 0.003407042 0.001961354 K02519 nan Translation initiation factor IF-2, a GTPase (InfB) (PDB:5ME0) VTP52158.1
Alteromonas macleodii MIT1002 502 1.10197E-4 2.04965E-4 2.51248E-4 1.65294E-5 K02834 nan Ribosome-binding factor RbfA (RbfA) (PDB:1JOS) VTP52160.1
Alteromonas macleodii MIT1002 503 4.34255E-5 2.35222E-5 K03177 nan tRNA U55 pseudouridine synthase TruB, may also work on U342 of tmRNA (TruB) (PDB:1K8W) VTP52162.1
Alteromonas macleodii MIT1002 504 0.001860834 0.002746788 0.001353633 0.005849275 K02956 nan Ribosomal protein S15P/S13E (RpsO) (PDB:4V4H) VTP52164.1
Alteromonas macleodii MIT1002 505 1.25624E-4 3.37323E-5 K06182 nan Pseudouridylate synthase RsuA, specific for 16S rRNA U516  and 23S rRNA U2605 (RsuA) (PDB:1KSK) VTP52166.1
Alteromonas macleodii MIT1002 506 0.002095283 0.00313641 0.001837986 0.004302386 nan Chromosome segregation ATPase Smc (Smc) (PDB:5XG3) VTP52168.1
Alteromonas macleodii MIT1002 507 2.15032E-5 5.60215E-5 1.98056E-5 1.69762E-6 nan Omega-amidase YafV/Nit2, hydrolyzes alpha-ketoglutaramate (Nit2) (PUBMED:28373563) VTP52170.1
Alteromonas macleodii MIT1002 508 K07394 nan Proline 4-hydroxylase (includes Rps23 Pro-64 3,4-dihydroxylase Tpa1), contains SM-20 domain (EGL9) (PDB:2G19) VTP52174.1
Alteromonas macleodii MIT1002 509 6.27E-6 3.18725E-5 7.62848E-5 6.27E-6 nan Response regulator c-di-GMP phosphodiesterase, RpfG family, contains REC and HD-GYP domains (RpfG) VTP52176.1
Alteromonas macleodii MIT1002 510 1.532E-5 4.08533E-6 4.08533E-6 2.65546E-5 K07004 nan Predicted extracellular nuclease VTP52178.1
Alteromonas macleodii MIT1002 511 nan Uncharacterized conserved protein, DUF2252 family VTP52180.1
Alteromonas macleodii MIT1002 512 0.004754227 0.008085164 0.008760756 0.0121348 K24119 nan Alkyl hydroperoxide reductase subunit AhpC (peroxiredoxin) (AhpC) (PDB:2RII) VTP52182.1
Alteromonas macleodii MIT1002 513 1.99478E-5 2.10561E-5 3.61832E-4 4.1558E-6 K03387 nan Alkyl hydroperoxide reductase subunit AhpF (AhpF) (PDB:4YKG) VTP52184.1
Alteromonas macleodii MIT1002 514 1.64474E-4 4.9668E-5 0.001151116 K02014 nan Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid (FhuE) (PDB:3EFM) VTP52186.1
Alteromonas macleodii MIT1002 515 nan VTP52188.1
Alteromonas macleodii MIT1002 516 3.56019E-6 1.7801E-6 7.12038E-6 9.43452E-5 nan PepSY-associated TM region (PiuB) (PUBMED:15124630) VTP52190.1
Alteromonas macleodii MIT1002 517 K06134 Ubiquinone biosynthesis, eukaryotes, 4-hydroxybenzoate + polyprenyl-PP => ubiquinol Demethoxyubiquinone hydroxylase, CLK1/Coq7/Cat5 family (ubiquinone biosynthesis) (Coq7) VTP52192.1
Alteromonas macleodii MIT1002 518 nan Sugar lactone lactonase YvrE (YvrE) (PDB:1E1A) VTP52195.1
Alteromonas macleodii MIT1002 519 4.66139E-4 5.82012E-5 2.43916E-4 5.43652E-4 K03797 nan C-terminal processing protease CtpA/Prc, contains a PDZ domain (CtpA) (PDB:6IQU) VTP52197.1
Alteromonas macleodii MIT1002 520 nan VTP52199.1
Alteromonas macleodii MIT1002 521 7.32804E-6 3.55505E-4 9.54528E-5 1.12739E-5 nan Radical SAM superfamily enzyme YgiQ, UPF0313 family (YgiQ) (PDB:6FD2) VTP52201.1
Alteromonas macleodii MIT1002 522 2.28407E-5 nan Predicted RNA-binding protein, contains EVE domain (EVE) (PDB:1ZCE) (PUBMED:32652237) VTP52203.1
Alteromonas macleodii MIT1002 523 nan VTP52205.1
Alteromonas macleodii MIT1002 524 1.20311E-5 nan VTP52207.1
Alteromonas macleodii MIT1002 525 nan Cupin domain protein related to quercetin dioxygenase (QdoI) (PDB:2H0V) VTP52209.1
Alteromonas macleodii MIT1002 526 nan DNA-binding transcriptional regulator, LysR family (LysR) (PDB:2FYI) VTP52211.1
Alteromonas macleodii MIT1002 527 2.15531E-6 3.4485E-5 1.93978E-5 nan VTP52213.1
Alteromonas macleodii MIT1002 528 0.001232638 2.1493E-4 2.8791E-4 6.71856E-4 K02014 nan Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid (FhuE) (PDB:3EFM) VTP52216.1
Alteromonas macleodii MIT1002 529 nan ABC-type transport system involved in multi-copper enzyme maturation, permease component (NosY) VTP52218.1
Alteromonas macleodii MIT1002 530 1.55721E-5 K01992 nan ABC-type transport system involved in multi-copper enzyme maturation, permease component (NosY) VTP52220.1
Alteromonas macleodii MIT1002 531 nan ABC-type multidrug transport system, ATPase component (CcmA) (PDB:5DO7) VTP52222.1
Alteromonas macleodii MIT1002 532 2.16061E-6 1.94455E-5 5.40152E-6 nan 2,4-dienoyl-CoA reductase or related NADH-dependent reductase, Old Yellow Enzyme (OYE) family (FadH) (PDB:1BWK) VTP52224.1
Alteromonas macleodii MIT1002 533 5.53061E-5 K03664 nan tmRNA-binding protein (SmpB) (PDB:1J1H) (PUBMED:26251518) VTP52226.1
Alteromonas macleodii MIT1002 534 5.71018E-6 K18588 nan Ribosome association toxin PasT (RatA) of the RatAB toxin-antitoxin module (PasT) (PDB:1T17) (PUBMED:21323758) VTP52228.1
Alteromonas macleodii MIT1002 535 K09801 nan Putative antitoxin component PasI (RatB) of the RatAB toxin-antitoxin module, ubiquitin-RnfH superfamily (PasI) (PDB:2HJ1) (PUBMED:23055930) VTP52230.1
Alteromonas macleodii MIT1002 536 K23775 nan DNA-binding transcriptional regulator, MarR family (MarR) (PDB:1JGS) VTP52232.1
Alteromonas macleodii MIT1002 537 3.35125E-6 K02168 nan Choline-glycine betaine transporter (BetT) (PDB:2WIT) VTP52234.1
Alteromonas macleodii MIT1002 538 4.7393E-5 9.73829E-7 1.94766E-6 9.73831E-6 K02014 nan Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid (FhuE) (PDB:3EFM) VTP52236.1
Alteromonas macleodii MIT1002 539 5.33759E-6 nan Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains (BepA) (PDB:6AIT) (PUBMED:24003122) VTP52238.1
Alteromonas macleodii MIT1002 540 3.23577E-5 2.28407E-5 7.42321E-5 nan Uncharacterized conserved protein VTP52240.1
Alteromonas macleodii MIT1002 541 nan VTP52242.1
Alteromonas macleodii MIT1002 542 4.23399E-5 8.35942E-5 1.4439E-4 8.14231E-6 K09773 nan Regulator of PEP synthase PpsR, kinase-PPPase family (combines ADP:protein kinase and phosphorylase activities) (PpsR) (PDB:5D0N) VTP52244.1
Alteromonas macleodii MIT1002 543 0.005637598 0.002108998 0.002269658 0.002749971 K01007 Reductive citrate cycle (Arnon-Buchanan cycle) Phosphoenolpyruvate synthase/pyruvate phosphate dikinase (PpsA) (PDB:5HV6) VTP52246.1
Alteromonas macleodii MIT1002 544 nan VTP52250.1
Alteromonas macleodii MIT1002 545 7.51296E-4 0.002515092 8.89488E-4 1.98529E-5 K07303 nan Aldehyde, CO or xanthine dehydrogenase, Mo-binding subunit (CoxL) (PDB:1DGJ) (PUBMED:10095793) VTP52252.1
Alteromonas macleodii MIT1002 546 6.54292E-5 5.26923E-4 2.54737E-4 5.23433E-5 K07302 nan Aldehyde, CO, or xanthine dehydrogenase, Fe-S subunit, CoxS/CutS family (CutS) (PDB:1FFU) (PUBMED:21175741) VTP52254.1
Alteromonas macleodii MIT1002 547 nan VTP52256.1
Alteromonas macleodii MIT1002 548 1.06204E-4 1.59306E-5 nan VTP52258.1
Alteromonas macleodii MIT1002 549 nan Predicted N-acyltransferase, GNAT family (ElaA) (PDB:1XEB) VTP52260.1
Alteromonas macleodii MIT1002 550 9.06564E-6 9.06564E-6 K18850 nan Ribosomal protein L16 Arg81 hydroxylase, contains JmjC domain (RoxA) (PDB:1VRB) VTP52262.1
Alteromonas macleodii MIT1002 551 nan Adenylate cyclase, class 3 (AcyC) (PDB:1AB8) VTP52264.1
Alteromonas macleodii MIT1002 552 0.00464744 0.006361079 0.008705415 0.007348999 K01756 Inosine monophosphate biosynthesis, PRPP + glutamine => IMP Adenylosuccinate lyase (PurB) (PDB:2HVG) VTP52266.1
Alteromonas macleodii MIT1002 553 5.35512E-5 5.77789E-5 1.55017E-4 5.28466E-5 K07153 nan Regulator of phage lambda lysogenization HflD, binds to CII and stimulates its degradation (HflD) (PDB:1QZ4) VTP52268.1
Alteromonas macleodii MIT1002 554 4.68996E-5 1.39917E-4 6.95678E-5 3.40022E-5 K00566 nan tRNA U34 2-thiouridine synthase MnmA/TrmU, contains the PP-loop ATPase domain (MnmA) (PDB:2HMA) (PUBMED:25825430) VTP52270.1
Alteromonas macleodii MIT1002 555 K06181 nan Pseudouridylate synthase RsuA, specific for 16S rRNA U516  and 23S rRNA U2605 (RsuA) (PDB:1KSK) VTP52272.1
Alteromonas macleodii MIT1002 556 0.046003565 0.057140235 0.083405435 0.149286 K00031 Citrate cycle (TCA cycle, Krebs cycle) Monomeric isocitrate dehydrogenase (IcdM) (PDB:1ITW) VTP52274.1
Alteromonas macleodii MIT1002 557 1.09921E-4 3.1755E-4 7.93874E-5 K03704 nan Cold shock protein, CspA family (CspC) (PDB:1C9O) VTP52276.1
Alteromonas macleodii MIT1002 558 1.65918E-5 8.29592E-6 K06891 nan ATP-dependent Clp protease adapter protein ClpS (ClpS) (PDB:1LZW) VTP52278.1
Alteromonas macleodii MIT1002 559 3.63503E-5 0.001078521 5.91272E-4 7.54075E-5 K03694 nan ATP-dependent Clp protease, ATP-binding subunit ClpA (ClpA) (PDB:1KSF) VTP52280.1
Alteromonas macleodii MIT1002 560 1.77095E-4 4.2747E-4 7.89802E-4 K02518 nan Translation initiation factor IF-1 (InfA) (PDB:5FIM) VTP52282.1
Alteromonas macleodii MIT1002 561 K21420 nan Arginyl-tRNA--protein-N-Asp/Glu arginylyltransferase (Ate1) VTP52284.1
Alteromonas macleodii MIT1002 562 K07497 nan Transposase InsO and inactivated derivatives (Tra5) VTP56522.1
Alteromonas macleodii MIT1002 563 nan VTP53630.1
Alteromonas macleodii MIT1002 564 1.36336E-5 3.06756E-5 K06169 nan tRNA isopentenyl-2-thiomethyl-A-37 hydroxylase MiaE (synthesis of 2-methylthio-cis-ribozeatin) (MiaE) (PDB:2ITB) VTP53629.1
Alteromonas macleodii MIT1002 565 K08682 nan Acyl carrier protein phosphodiesterase (AcpH) (PUBMED:16107329) VTP53628.1
Alteromonas macleodii MIT1002 566 4.0787E-5 2.22969E-5 3.26296E-6 1.80279E-4 nan Carboxypeptidase C (cathepsin A) (Kex1) (PDB:1AC5) VTP53626.1
Alteromonas macleodii MIT1002 567 nan Ca2+-binding protein, RTX toxin-related (PDB:1AF0) (PUBMED:15135544) VTP53624.1
Alteromonas macleodii MIT1002 568 nan Invasion protein IalB, involved in pathogenesis (IalB) (PDB:3DTD) VTP53622.1
Alteromonas macleodii MIT1002 569 nan DNA-binding transcriptional regulator, LysR family (LysR) (PDB:2FYI) VTP53620.1
Alteromonas macleodii MIT1002 570 1.04067E-5 4.33613E-5 7.19797E-5 1.69109E-5 K00344 nan NADPH:quinone reductase or related Zn-dependent oxidoreductase (Qor) (PDB:2VCY) VTP53618.1
Alteromonas macleodii MIT1002 571 1.2763E-6 K03781 Photorespiration Protein/nucleotide deglycase, PfpI/YajL/DJ-1 family (repair of methylglyoxal-glycated proteins and nucleic acids) (YajL) (PDB:5SY4) (PUBMED:19028889;28596309;26678554)!!!Catalase (KatE) (PDB:6RJR) VTP53616.1
Alteromonas macleodii MIT1002 572 nan NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family (FabG) (PDB:6L1H) VTP53614.1
Alteromonas macleodii MIT1002 573 2.47709E-5 6.19273E-6 8.46339E-5 6.19273E-5 nan Rubrerythrin, includes spore coat protein YhjR (YhjR) (PDB:2E0Z) VTP53612.1
Alteromonas macleodii MIT1002 574 nan Peroxiredoxin (Bcp) (PDB:5IPH) VTP53610.1
Alteromonas macleodii MIT1002 575 1.06914E-5 8.01855E-6 6.68213E-6 3.87563E-5 K19745 nan NADPH:quinone reductase or related Zn-dependent oxidoreductase (Qor) (PDB:2VCY) VTP53608.1
Alteromonas macleodii MIT1002 576 nan DNA-binding transcriptional regulator, HxlR family (HxlR) (PDB:1YYV) VTP53606.1
Alteromonas macleodii MIT1002 577 1.7658E-6 1.7658E-6 K00690 nan Glycosidase/amylase (phosphorylase) (AmyA) (PDB:2P67) (PUBMED:29684280) VTP53604.1
Alteromonas macleodii MIT1002 578 nan VTP53602.1
Alteromonas macleodii MIT1002 579 nan NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family (FabG) (PDB:6L1H) VTP53600.1
Alteromonas macleodii MIT1002 580 0.00541754 0.003074551 0.001531304 0.007339508 K07192 nan Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain (YqiK) (PDB:1WIN) VTP53598.1
Alteromonas macleodii MIT1002 581 nan VTP53596.1
Alteromonas macleodii MIT1002 582 1.45953E-5 1.45953E-5 3.28394E-5 K03269 KDO2-lipid A biosynthesis, Raetz pathway, LpxL-LpxM type UDP-2,3-diacylglucosamine pyrophosphatase LpxH (LpxH) (PDB:5WLY) VTP53594.1
Alteromonas macleodii MIT1002 583 0.002945611 0.002533801 0.00301035 0.005710493 K03768 nan Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family (PpiB) (PDB:4DGD) VTP53592.1
Alteromonas macleodii MIT1002 584 1.42738E-4 3.08416E-4 4.13557E-4 8.50693E-5 K01883 nan Cysteinyl-tRNA synthetase (CysS) (PDB:1LI5) VTP53590.1
Alteromonas macleodii MIT1002 585 K00673 Arginine succinyltransferase pathway, arginine => glutamate Arginine/ornithine N-succinyltransferase beta subunit (AstA) (PDB:1YLE)!!!Uncharacterized conserved protein VTP53588.1
Alteromonas macleodii MIT1002 586 K03719 nan DNA-binding transcriptional regulator, Lrp family (Lrp) (PDB:1I1G) VTP53586.1
Alteromonas macleodii MIT1002 587 nan VTP53584.1
Alteromonas macleodii MIT1002 588 nan VTP53582.1
Alteromonas macleodii MIT1002 589 K08307 nan Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain) (MltE) (PDB:153L)!!!LysM repeat (LysM) (PDB:1E0G) VTP53580.1
Alteromonas macleodii MIT1002 590 4.23523E-5 1.00308E-5 2.17334E-5 K01069 nan Glyoxylase or a related metal-dependent hydrolase, beta-lactamase superfamily II (GloB) (PDB:1QH3) (PUBMED:25670698) VTP53578.1
Alteromonas macleodii MIT1002 591 nan Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG (UbiE) (PDB:4OBW) VTP53576.1
Alteromonas macleodii MIT1002 592 K03442 nan Small-conductance mechanosensitive channel (MscS) (PDB:2OAU) VTP53574.1
Alteromonas macleodii MIT1002 593 0.001244576 0.001999747 0.002995929 0.001538568 K01874 nan tRNA-binding EMAP/Myf domain (EMAP) (PDB:1MKH)!!!Methionyl-tRNA synthetase (MetG) (PDB:1A8H) VTP53572.1
Alteromonas macleodii MIT1002 594 9.55834E-6 5.97397E-6 K03593 nan Fe-S cluster carrier ATPase, Mrp/ApbC/NBP35 family (Mrp) (PDB:2PH1) (PUBMED:18616280;19114487;31709520) VTP53570.1
Alteromonas macleodii MIT1002 595 1.85992E-4 2.21702E-4 2.75267E-4 4.46379E-6 K01494 Pyrimidine deoxyribonuleotide biosynthesis, CDP/CTP => dCDP/dCTP,dTDP/dTTP dCTP deaminase (Dcd) (PDB:1XS1) VTP53568.1
Alteromonas macleodii MIT1002 596 1.56373E-5 K14445 nan Di- and tricarboxylate antiporter (CitT) (PDB:4F35) VTP53566.1
Alteromonas macleodii MIT1002 597 nan AraC-type DNA-binding domain and AraC-containing proteins (AraC) (PDB:1BL0) VTP53564.1
Alteromonas macleodii MIT1002 598 nan Heavy metal-bindng TRASH/YHS domain, predicted Cu/Ag metallochaperone (YHS) VTP53562.1
Alteromonas macleodii MIT1002 599 nan VTP53560.1
Alteromonas macleodii MIT1002 600 3.01153E-6 nan VTP53558.1
Alteromonas macleodii MIT1002 601 4.83169E-6 K14060 nan Site-specific DNA recombinase SpoIVCA/DNA invertase PinE (SpoIVCA) (PDB:1GDT) VTP53556.1
Alteromonas macleodii MIT1002 602 nan VTP53554.1
Alteromonas macleodii MIT1002 603 nan VTP53552.1
Alteromonas macleodii MIT1002 604 nan VTP53550.1
Alteromonas macleodii MIT1002 605 nan VTP53548.1
Alteromonas macleodii MIT1002 606 nan VTP53546.1
Alteromonas macleodii MIT1002 607 K03469 nan Ribonuclease HI (RnhA) (PDB:1LAW) VTP53544.1
Alteromonas macleodii MIT1002 608 nan VTP53542.1
Alteromonas macleodii MIT1002 609 nan VTP53540.1
Alteromonas macleodii MIT1002 610 K18939 nan DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA (AcrR) (PDB:2QOP) VTP53538.1
Alteromonas macleodii MIT1002 611 nan Predicted alpha/beta hydrolase VTP53536.1
Alteromonas macleodii MIT1002 612 nan VTP53534.1
Alteromonas macleodii MIT1002 613 nan Alkylhydroperoxidase family enzyme, contains CxxC motif (YciW) (PDB:1GU9) VTP53532.1
Alteromonas macleodii MIT1002 614 nan Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH domain (GlxA) VTP53530.1
Alteromonas macleodii MIT1002 615 nan 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase MenH and related esterases, alpha/beta hydrolase fold (MenH) (PDB:4MYS) VTP53528.1
Alteromonas macleodii MIT1002 616 1.95415E-6 3.9083E-6 5.96016E-5 K02482 nan Signal transduction histidine kinase regulating C4-dicarboxylate transport system (PDB:4GCZ) VTP53524.1
Alteromonas macleodii MIT1002 617 1.72764E-6 3.51286E-5 1.67005E-5 6.21949E-5 K07814 nan Response regulator c-di-GMP phosphodiesterase, RpfG family, contains REC and HD-GYP domains (RpfG)!!!DNA-binding response regulator, ActR/RegA family, consists of REC and Fis-type HTH domains (PDB:3RQI) VTP53522.1
Alteromonas macleodii MIT1002 618 2.49154E-4 4.86583E-5 1.34836E-4 1.59166E-4 K03781 Photorespiration Catalase (KatE) (PDB:6RJR) VTP53520.1
Alteromonas macleodii MIT1002 619 3.94335E-6 nan Nitroreductase (NfnB) (PDB:1F5V) VTP53518.1
Alteromonas macleodii MIT1002 620 5.61E-6 K21023 nan Cyclic di-GMP metabolism protein, combines GGDEF and EAL domains with a 6TM membrane domain VTP53516.1
Alteromonas macleodii MIT1002 621 5.97397E-6 1.44171E-4 2.30993E-5 K09461 nan 2,4-dienoyl-CoA reductase or related NADH-dependent reductase, Old Yellow Enzyme (OYE) family (FadH) (PDB:1BWK) VTP53514.1
Alteromonas macleodii MIT1002 622 1.78621E-4 3.12969E-5 K08325 nan Alcohol dehydrogenase YqhD, Fe-dependent ADH family (YqdH) (PDB:1OJ7) VTP53512.1
Alteromonas macleodii MIT1002 623 nan Protein/nucleotide deglycase, PfpI/YajL/DJ-1 family (repair of methylglyoxal-glycated proteins and nucleic acids) (YajL) (PDB:5SY4) (PUBMED:19028889;28596309;26678554) VTP53510.1
Alteromonas macleodii MIT1002 624 2.91181E-6 K05596 nan DNA-binding transcriptional regulator, LysR family (LysR) (PDB:2FYI) VTP53508.1
Alteromonas macleodii MIT1002 625 1.04999E-4 2.62498E-5 nan ABC-type phosphate transport system, periplasmic component (PstS) (PDB:2Q9T) VTP53506.1
Alteromonas macleodii MIT1002 626 nan VTP53504.1
Alteromonas macleodii MIT1002 627 7.88999E-5 2.46791E-4 3.1193E-5 6.41291E-4 K03406 nan Methyl-accepting chemotaxis protein (MCP) (Tar) (PDB:1QU7) VTP53502.1
Alteromonas macleodii MIT1002 628 5.29083E-4 1.95415E-4 5.9123E-4 1.93919E-4 nan Aminopeptidase N, contains DUF3458 domain (PepN) (PDB:6ATK) (PUBMED:24123841) VTP53500.1
Alteromonas macleodii MIT1002 629 K07004 nan Endonuclease I (EndA) (PDB:1OUO)!!!Predicted extracellular nuclease VTP53498.1
Alteromonas macleodii MIT1002 630 nan VTP53497.1
Alteromonas macleodii MIT1002 631 2.98091E-6 nan Predicted DNA-binding transcriptional regulator YobV, contains HTH and WYL domains (YobV) VTP53495.1
Alteromonas macleodii MIT1002 632 nan Signal transduction histidine kinase (BaeS) (PDB:1JOY)!!!CheY-like REC (receiver) domain, includes chemotaxis protein CheY  and sporulation regulator Spo0F (CheY) (PDB:6QRJ)!!!DNA-binding response regulator, FixJ family, consists of REC and HTH domains (FixJ) (PDB:1YIO) VTP53493.1
Alteromonas macleodii MIT1002 633 K01051 Pectin degradation Pectin methylesterase and related acyl-CoA thioesterases (PemB) (PDB:1GQ8) VTP53491.1
Alteromonas macleodii MIT1002 634 nan Polygalacturonase (Pgu1) (PDB:1BHE) VTP53489.1
Alteromonas macleodii MIT1002 635 K15532 nan Rhamnogalacturonyl hydrolase YesR (YesR) (PDB:1NC5) VTP53487.1
Alteromonas macleodii MIT1002 636 3.65832E-4 4.56476E-6 3.6192E-5 K02014 nan Outer membrane receptor for ferrienterochelin and colicins (FepA) (PDB:2HDF) (PUBMED:16468998) VTP53485.1
Alteromonas macleodii MIT1002 637 nan VTP53483.1
Alteromonas macleodii MIT1002 638 1.31952E-5 nan Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK (TesA) (PDB:1BWP) VTP53481.1
Alteromonas macleodii MIT1002 639 K07485 nan Transposase VTP53479.1
Alteromonas macleodii MIT1002 640 2.5563E-6 K07089 nan Uncharacterized membrane protein YraQ, UPF0718 family (YraQ) VTP53477.1
Alteromonas macleodii MIT1002 641 2.11386E-5 nan DNA-binding transcriptional regulator, ArsR family (ArsR) (PDB:3F6V) VTP53475.1
Alteromonas macleodii MIT1002 642 nan VTP50175.1
Alteromonas macleodii MIT1002 643 4.21811E-4 1.01112E-4 1.82819E-4 6.28119E-5 nan Fermentation-respiration switch esterase FrsA, DUF1100 family (FrsA) VTP50174.1
Alteromonas macleodii MIT1002 644 nan VTP50173.1
Alteromonas macleodii MIT1002 645 4.53282E-6 3.17297E-5 K01838 nan Beta-phosphoglucomutase, HAD superfamily (YcjU) (PDB:3E58) (PUBMED:29684280) VTP50172.1
Alteromonas macleodii MIT1002 646 nan Predicted arabinose efflux permease AraJ, MFS family (AraJ) (PDB:4LDS) VTP50171.1
Alteromonas macleodii MIT1002 647 2.66701E-4 5.37754E-4 4.13418E-4 1.4594E-4 K03701 nan Excinuclease UvrABC ATPase subunit (UvrA) (PDB:2R6F) VTP50170.1
Alteromonas macleodii MIT1002 648 nan VTP50169.1
Alteromonas macleodii MIT1002 649 2.57948E-5 9.43856E-5 7.15221E-5 2.19842E-5 K04046 nan Molecular chaperone DnaK (HSP70) (DnaK) (PDB:3I33) VTP50168.1
Alteromonas macleodii MIT1002 650 K03797 nan C-terminal processing protease CtpA/Prc, contains a PDZ domain (CtpA) (PDB:6IQU) VTP50167.1
Alteromonas macleodii MIT1002 651 nan DNA-binding transcriptional regulator, MarR family (MarR) (PDB:1JGS) VTP50166.1
Alteromonas macleodii MIT1002 652 6.32638E-6 K07107 nan Acyl-CoA thioesterase FadM (FadM) (PDB:2FUJ) VTP50165.1
Alteromonas macleodii MIT1002 653 1.51615E-5 3.79038E-6 nan Predicted 2-oxoglutarate- and Fe(II)-dependent dioxygenase YbiX (PiuC) (PDB:3DKQ) VTP50164.1
Alteromonas macleodii MIT1002 654 2.04721E-5 1.11666E-5 K01714 Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine 4-hydroxy-tetrahydrodipicolinate synthase/N-acetylneuraminate lyase (DapA) (PDB:2R91) (PUBMED:27574185) VTP50163.1
Alteromonas macleodii MIT1002 655 K09950 nan Uncharacterized conserved protein, DUF3299 family (PDB:4HSP) (PUBMED:21378183) VTP50162.1
Alteromonas macleodii MIT1002 656 0.010355883 0.006478672 0.013445327 0.02606375 K01507 nan Inorganic pyrophosphatase (Ppa) (PDB:117E) VTP50161.1
Alteromonas macleodii MIT1002 657 0.006813068 1.46111E-4 0.001084102 4.9921E-4 K03841 Gluconeogenesis, oxaloacetate => fructose-6P Fructose-1,6-bisphosphatase (Fbp) (PDB:1BK4) VTP50160.1
Alteromonas macleodii MIT1002 658 7.78201E-6 1.26458E-5 K02558 nan UDP-N-acetylmuramate-alanine ligase MurC and related ligases, MurC/Mpl family (MurC) VTP50159.1
Alteromonas macleodii MIT1002 659 1.53541E-4 4.08976E-4 2.47061E-4 2.05186E-4 K03186 Ubiquinone biosynthesis, prokaryotes, chorismate (+ polyprenyl-PP) => ubiquinol Flavin prenyltransferase UbiX (UbiX) (PDB:1SBZ) (PUBMED:28754323;26083743) VTP50158.1
Alteromonas macleodii MIT1002 660 3.16006E-5 1.30761E-5 5.55734E-5 8.17256E-6 K05986 nan VTP50157.1
Alteromonas macleodii MIT1002 661 nan ABC-type glycerol-3-phosphate transport system, periplasmic component (UgpB) (PDB:2Z8D) VTP50156.1
Alteromonas macleodii MIT1002 662 2.18476E-5 9.10319E-5 1.36548E-4 6.82739E-5 K02553 nan RNA degradosome component RraA (regulator of RNase E activity) (RraA) (PDB:1J3L) (PUBMED:20471400) VTP50155.1
Alteromonas macleodii MIT1002 663 K19302 nan Membrane-associated phospholipid phosphatase (PgpB) (PDB:1D2T) VTP50154.1
Alteromonas macleodii MIT1002 664 nan UDP:flavonoid glycosyltransferase YjiC, YdhE family (YjiC) (PDB:2ACV) (PUBMED:23974133) VTP50153.1
Alteromonas macleodii MIT1002 665 1.83906E-4 9.62513E-4 8.29339E-4 1.91305E-4 K01586 Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine Diaminopimelate decarboxylase (LysA) (PDB:1D7K) VTP50151.1
Alteromonas macleodii MIT1002 666 2.54889E-5 1.50809E-4 1.147E-4 3.98264E-5 K01778 Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine Diaminopimelate epimerase (DapF) (PDB:1BWZ) VTP50150.1
Alteromonas macleodii MIT1002 667 3.42611E-5 3.42611E-5 3.23577E-5 K09921 nan Uncharacterized conserved protein YigA, DUF484 family (YigA) (PDB:3E98) VTP50149.1
Alteromonas macleodii MIT1002 668 K03733 nan Site-specific recombinase XerC (XerC) VTP50148.1
Alteromonas macleodii MIT1002 669 K20862 Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD FMN and 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB, HAD superfamily (riboflavin biosynthesis) (YigB) (PDB:4JB3) (PUBMED:24123841) VTP50147.1
Alteromonas macleodii MIT1002 670 nan GGDEF domain, diguanylate cyclase (c-di-GMP synthetase) or its enzymatically inactive variants (GGDEF) (PDB:6D9M) VTP50146.1
Alteromonas macleodii MIT1002 671 1.74788E-4 2.72495E-4 1.92158E-4 1.84016E-4 K00640 Cysteine biosynthesis, serine => cysteine Serine acetyltransferase (CysE) (PDB:1T3D) VTP50145.1
Alteromonas macleodii MIT1002 672 4.43941E-5 3.04069E-5 9.20314E-5 3.9529E-5 K03657 nan Superfamily I DNA or RNA helicase (UvrD) (PDB:6PPR) VTP50144.1
Alteromonas macleodii MIT1002 673 2.0691E-6 nan Two-component response regulator, PleD family, consists of two REC domains and a diguanylate cyclase (GGDEF) domain (PleD) (PDB:1W25) VTP50143.1
Alteromonas macleodii MIT1002 674 K05786 nan Membrane protein RarD, contains two EamA domains, drug/metabolite transporter family (RarD) (PUBMED:26335199) VTP50142.1
Alteromonas macleodii MIT1002 675 1.44256E-4 3.29351E-5 4.34744E-5 1.78838E-4 K06213 nan Mg/Co/Ni transporter MgtE (contains CBS domain) (MgtE) (PDB:2YVX) VTP50141.1
Alteromonas macleodii MIT1002 676 K17362 nan Acyl-CoA thioesterase PaaI, contains HGG motif (PaaI) (PDB:1PSU) VTP50140.1
Alteromonas macleodii MIT1002 677 1.43453E-6 4.30359E-6 1.43453E-6 K03654 nan Superfamily II DNA helicase RecQ (RecQ) (PDB:1OYW) VTP50139.1
Alteromonas macleodii MIT1002 678 2.1258E-4 7.13E-5 5.01741E-5 3.96111E-6 K00799 nan Glutathione S-transferase (GstA) (PDB:1A0F) VTP50138.1
Alteromonas macleodii MIT1002 679 nan VTP50137.1
Alteromonas macleodii MIT1002 680 1.17745E-5 3.71826E-6 1.58026E-5 K21023 nan GGDEF domain, diguanylate cyclase (c-di-GMP synthetase) or its enzymatically inactive variants (GGDEF) (PDB:6D9M)!!!EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant) (EAL) (PDB:2BAS)!!!PAS domain (PAS) (PDB:2MWG) VTP50136.1
Alteromonas macleodii MIT1002 681 4.31063E-5 4.31062E-6 1.72425E-5 K01497 Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD GTP cyclohydrolase II (RibA) (PDB:2BZ0) VTP50135.1
Alteromonas macleodii MIT1002 682 nan Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain (DamX) VTP50134.1
Alteromonas macleodii MIT1002 683 3.0323E-6 nan Glutathione synthase, LysX or RimK-type ligase, ATP-grasp superfamily (LysX) (PDB:1GLV) VTP50133.1
Alteromonas macleodii MIT1002 684 1.15941E-5 7.13483E-6 8.02667E-5 K03406 nan Methyl-accepting chemotaxis protein (MCP) (Tar) (PDB:1QU7) VTP50132.1
Alteromonas macleodii MIT1002 685 nan VTP50131.1
Alteromonas macleodii MIT1002 686 nan Glutaredoxin (GrxC) (PDB:1AAZ) VTP50130.1
Alteromonas macleodii MIT1002 687 4.58566E-5 2.4277E-5 3.55164E-4 4.31591E-5 nan Acetoin utilization deacetylase AcuC or a related deacetylase (AcuC) (PDB:1C3P) VTP50129.1
Alteromonas macleodii MIT1002 688 0.001786947 1.55407E-4 9.60658E-4 6.72078E-4 K18122 nan Propionyl CoA:succinate CoA transferase (ACH1) (PDB:2G39) (PUBMED:10769117)!!!L-amino acid N-acyltransferase MnaT (MnaT) (PDB:3DR6) (PUBMED:27941785) VTP50128.1
Alteromonas macleodii MIT1002 689 4.79655E-5 5.15185E-5 2.16733E-4 nan Predicted esterase of the alpha/beta hydrolase fold (YdeN) (PDB:1UXO) (PUBMED:15159570) VTP50127.1
Alteromonas macleodii MIT1002 690 2.97099E-4 1.68716E-4 1.15034E-4 9.73525E-4 K18138 Multidrug resistance, efflux pump MexAB-OprM Multidrug efflux pump subunit AcrB (AcrB) (PDB:1IWG) VTP50126.1
Alteromonas macleodii MIT1002 691 0.00161025 9.33991E-4 3.91599E-4 0.003103174 K03585 Multidrug resistance, efflux pump MexAB-OprM Multidrug efflux pump subunit AcrA (membrane-fusion protein) (AcrA) (PDB:1T5E) VTP50125.1
Alteromonas macleodii MIT1002 692 nan DnaJ-class molecular chaperone with C-terminal Zn finger domain (DnaJ) (PDB:1BQ0) VTP50124.1
Alteromonas macleodii MIT1002 693 nan Uncharacterized conserved protein, DUF1499 family VTP50123.1
Alteromonas macleodii MIT1002 694 K11741 nan Multidrug transporter EmrE and related cation transporters (EmrE) (PDB:2I68) VTP50122.1
Alteromonas macleodii MIT1002 695 K06895 nan Arginine exporter protein ArgO (ArgO) VTP50121.1
Alteromonas macleodii MIT1002 696 K05596 nan DNA-binding transcriptional regulator, LysR family (LysR) (PDB:2FYI) VTP50120.1
Alteromonas macleodii MIT1002 697 K18968 nan GGDEF domain, diguanylate cyclase (c-di-GMP synthetase) or its enzymatically inactive variants (GGDEF) (PDB:6D9M) VTP50119.1
Alteromonas macleodii MIT1002 698 K21973 nan EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant) (EAL) (PDB:2BAS) VTP50118.1
Alteromonas macleodii MIT1002 699 nan VTP50117.1
Alteromonas macleodii MIT1002 700 nan VTP50116.1
Alteromonas macleodii MIT1002 701 K07275 nan Outer membrane protein OmpW (OmpW) (PDB:2F1T) VTP50115.1
Alteromonas macleodii MIT1002 702 nan Superfamily II DNA or RNA helicase (SSL2) (PDB:6JDE)!!!Uncharacterized conserved protein VTP50113.1
Alteromonas macleodii MIT1002 703 nan VTP50112.1
Alteromonas macleodii MIT1002 704 nan VTP50111.1
Alteromonas macleodii MIT1002 705 2.57125E-6 2.57125E-6 nan Abortive infection bacteriophage resistance protein (AbiF) VTP50110.1
Alteromonas macleodii MIT1002 706 8.9503E-6 8.9503E-6 5.59394E-6 nan Predicted flavoprotein YhiN (YhiN) (PDB:3V76) VTP50109.1
Alteromonas macleodii MIT1002 707 1.957E-4 2.56375E-5 1.03405E-4 2.83294E-4 nan ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component (PotA) (PDB:1Z47) VTP50108.1
Alteromonas macleodii MIT1002 708 6.95152E-6 2.51993E-5 K02011 nan ABC-type Fe3+ transport system, permease component (FbpB) VTP50107.1
Alteromonas macleodii MIT1002 709 1.99391E-4 2.73524E-4 7.7882E-4 5.77724E-4 K02012 nan ABC-type Fe3+ transport system, periplasmic component (AfuA) (PDB:6IVY) VTP50106.1
Alteromonas macleodii MIT1002 710 1.80886E-4 2.36459E-4 7.08288E-4 0.002971543 nan VTP50105.1
Alteromonas macleodii MIT1002 711 0.001099676 6.53458E-4 0.001517889 0.008370793 K24138 nan Peroxiredoxin (AHP1) (PDB:1H4O) VTP50104.1
Alteromonas macleodii MIT1002 712 K15984 nan tRNA1(Val) A37 N6-methylase TrmN6 (TrmN6) VTP50103.1
Alteromonas macleodii MIT1002 713 3.18612E-6 K03655 nan RecG-like helicase (RecG) (PDB:1GM5) VTP50102.1
Alteromonas macleodii MIT1002 714 3.74199E-6 3.74199E-6 K00556 nan tRNA G18 (ribose-2'-O)-methylase SpoU (SpoU) (PDB:1GZ0) VTP50101.1
Alteromonas macleodii MIT1002 715 8.35857E-4 0.001999187 0.002722833 0.001545763 K09022 nan Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family (RidA) (PDB:1J7H) (PUBMED:22094463;32205462) VTP50100.1
Alteromonas macleodii MIT1002 716 1.15915E-4 4.38224E-4 1.9889E-4 1.30091E-4 K01139 nan (p)ppGpp synthase/hydrolase, HD superfamily (SpoT) (PDB:1TDJ) VTP50099.1
Alteromonas macleodii MIT1002 717 2.44269E-4 1.22134E-4 3.1755E-4 K03060 nan DNA-directed RNA polymerase, subunit K/omega (RpoZ) (PDB:3LU0) VTP50098.1
Alteromonas macleodii MIT1002 718 1.7202E-4 1.33487E-4 4.58262E-4 1.75461E-4 K00942 Guanine ribonucleotide biosynthesis IMP => GDP,GTP Guanylate kinase (Gmk) (PDB:1EX6) VTP50097.1
Alteromonas macleodii MIT1002 719 nan
Alteromonas macleodii MIT1002 720 nan VTP55237.1
Alteromonas macleodii MIT1002 721 K07494 nan CRISPR-associated protein Csa3, CARF domain (Csa3) (PDB:2WTE) (PUBMED:21093452)
Alteromonas macleodii MIT1002 722 2.46321E-6 K04568 nan Elongation factor P--beta-lysine ligase (EF-P beta-lysylation pathway) (EpmA) (PDB:3A5Z) (PUBMED:20729861) VTP50662.1
Alteromonas macleodii MIT1002 723 1.39582E-4 3.5671E-4 3.24141E-4 1.97741E-4 K02356 nan Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) (Efp) (PDB:1UEB) VTP50661.1
Alteromonas macleodii MIT1002 724 K19810 nan L-lysine 2,3-aminomutase (EF-P beta-lysylation pathway) (EpmB) (PDB:2A5H) VTP50660.1
Alteromonas macleodii MIT1002 725 nan VTP50659.1
Alteromonas macleodii MIT1002 726 1.27908E-4 1.14584E-4 nan VTP50658.1
Alteromonas macleodii MIT1002 727 1.05415E-4 3.40049E-5 6.12089E-5 1.3874E-4 nan VTP50657.1
Alteromonas macleodii MIT1002 728 nan Beta-phosphoglucomutase, HAD superfamily (YcjU) (PDB:3E58) (PUBMED:29684280) VTP50656.1
Alteromonas macleodii MIT1002 729 nan VTP50655.1
Alteromonas macleodii MIT1002 730 2.5085E-5 1.32393E-4 9.15136E-5 9.05847E-6 K02622 nan DNA gyrase/topoisomerase IV, subunit B (GyrB) (PDB:1EI1) VTP50654.1
Alteromonas macleodii MIT1002 731 K07000 nan Predicted esterase YcpF, UPF0227 family (YcfP) (PDB:4FLE) VTP50653.1
Alteromonas macleodii MIT1002 732 K03651 nan 3',5'-cyclic AMP phosphodiesterase CpdA (CpdA) (PDB:2ZO9) VTP50652.1
Alteromonas macleodii MIT1002 733 K09920 nan Uncharacterized conserved protein YqiB, DUF1249 family (yqiB) VTP50651.1
Alteromonas macleodii MIT1002 734 K01515 nan 8-oxo-dGTP pyrophosphatase MutT and related house-cleaning NTP pyrophosphohydrolases, NUDIX family (MutT) (PDB:4V14) VTP50650.1
Alteromonas macleodii MIT1002 735 0.005373056 0.005791895 0.003713098 0.017491138 K12340 Pertussis pathogenicity signature, T1SS Outer membrane protein TolC (TolC) (PDB:1EK9) VTP50649.1
Alteromonas macleodii MIT1002 736 nan VTP50648.1
Alteromonas macleodii MIT1002 737 2.47709E-5 1.23855E-5 2.27067E-5 1.54818E-5 K08714 nan VTP50647.1
Alteromonas macleodii MIT1002 738 0.004676636 0.002019499 0.002845572 0.004136548 nan Type IV pilus assembly protein PilF/PilW (PilF) (PDB:2VQ2) (PUBMED:16403447)!!!Cytochrome c-type biogenesis protein CcmH/NrfG (NrfG)!!!Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains (BepA) (PDB:6AIT) (PUBMED:24003122) VTP50646.1
Alteromonas macleodii MIT1002 739 0.001896935 0.00317369 0.003429926 0.002550313 K05592 nan Superfamily II DNA and RNA helicase (SrmB) (PDB:3RRM) VTP50645.1
Alteromonas macleodii MIT1002 740 1.7906E-4 0.001043771 6.22566E-4 3.24984E-5 K02302 Siroheme biosynthesis, glutamyl-tRNA => siroheme Uroporphyrinogen-III methylase (siroheme synthase) (CysG) (PDB:1PJQ)!!!Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) (CysG2) (PDB:1PJQ) VTP50644.1
Alteromonas macleodii MIT1002 741 nan VTP50643.1
Alteromonas macleodii MIT1002 742 K02574 nan Polyferredoxin NapH (NapH) (PUBMED:27322068) VTP50642.1
Alteromonas macleodii MIT1002 743 nan DNA-binding transcriptional regulator, MocR family, contains an aminotransferase domain (ARO8) (PDB:2R2N) VTP50641.1
Alteromonas macleodii MIT1002 744 2.16847E-4 5.07448E-4 3.87048E-4 1.06848E-4 K07175 nan Predicted ribonuclease YlaK, contains NYN-type RNase and PhoH-family ATPase domains (YlaK) (PUBMED:17114934) VTP50640.1
Alteromonas macleodii MIT1002 745 1.89519E-6 nan VTP50639.1
Alteromonas macleodii MIT1002 746 3.75246E-5 1.11651E-4 1.2826E-4 1.07499E-4 K03580 nan Superfamily II DNA or RNA helicase, SNF2 family (HepA) (PDB:6UXV) VTP50638.1
Alteromonas macleodii MIT1002 747 K06177 nan Pseudouridine synthase RluA, 23S rRNA- or tRNA-specific (RluA) (PDB:2I82) VTP50637.1
Alteromonas macleodii MIT1002 748 nan VTP50636.1
Alteromonas macleodii MIT1002 749 nan VTP50635.1
Alteromonas macleodii MIT1002 750 K08218 nan Na+/melibiose symporter or related transporter (MelB) (PDB:4M64) VTP50634.1
Alteromonas macleodii MIT1002 751 3.1406E-5 3.62377E-6 3.62377E-6 1.93268E-5 nan Signal transduction histidine kinase (BaeS) (PDB:1JOY)!!!CheY-like REC (receiver) domain, includes chemotaxis protein CheY  and sporulation regulator Spo0F (CheY) (PDB:6QRJ)!!!DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains (AtoC) (PDB:1ZY2) VTP50633.1
Alteromonas macleodii MIT1002 752 2.67285E-6 3.65289E-5 6.68213E-6 K18968 nan GGDEF domain, diguanylate cyclase (c-di-GMP synthetase) or its enzymatically inactive variants (GGDEF) (PDB:6D9M) VTP50632.1
Alteromonas macleodii MIT1002 753 4.11689E-5 1.39974E-5 2.47013E-6 nan CheY-like REC (receiver) domain, includes chemotaxis protein CheY  and sporulation regulator Spo0F (CheY) (PDB:6QRJ)!!!Phosphoaspartate phosphatase CheC, specific for CheY-P (CheC) (PDB:2F9Z) VTP50631.1
Alteromonas macleodii MIT1002 754 1.13228E-4 3.01588E-4 2.28572E-4 2.57144E-4 K00560 Pyrimidine deoxyribonuleotide biosynthesis, CDP/CTP => dCDP/dCTP,dTDP/dTTP Thymidylate synthase (ThyA) (PDB:1AN5) VTP50630.1
Alteromonas macleodii MIT1002 755 2.47526E-4 1.30277E-5 5.21107E-5 3.5989E-4 K13292 nan Prolipoprotein diacylglyceryltransferase (Lgt) (PDB:5AZB) VTP50629.1
Alteromonas macleodii MIT1002 756 K07090 nan Sulfite exporter TauE/SafE/YfcA and related permeases, UPF0721 family (TauE) (PUBMED:21183667;22797525) VTP50628.1
Alteromonas macleodii MIT1002 757 5.3157E-6 6.72055E-5 3.75895E-5 2.84769E-5 K08484 nan Signal transduction protein containing GAF and PtsI domains (PtsP) VTP50627.1
Alteromonas macleodii MIT1002 758 2.27984E-5 1.22134E-5 K08311 nan 8-oxo-dGTP pyrophosphatase MutT and related house-cleaning NTP pyrophosphohydrolases, NUDIX family (MutT) (PDB:4V14) VTP50626.1
Alteromonas macleodii MIT1002 759 K03573 nan DNA mismatch repair protein MutH (MutH) (PDB:1AZO) VTP50625.1
Alteromonas macleodii MIT1002 760 6.12373E-5 2.44949E-6 6.12373E-6 nan AraC-type DNA-binding domain and AraC-containing proteins (AraC) (PDB:1BL0) VTP50624.1
Alteromonas macleodii MIT1002 761 1.1409E-5 5.03164E-5 3.56896E-5 1.5797E-5 K18446 nan Inorganic triphosphatase YgiF, contains CYTH and CHAD domains (PPPi) (PDB:5A60) (PUBMED:22984449) VTP50623.1
Alteromonas macleodii MIT1002 762 0.002699658 0.001427506 0.001868656 0.00396155 K07184 nan Uncharacterized conserved protein YgiM, contains N-terminal SH3 domain, DUF1202 family (YgiM) (PDB:2KQ8) VTP50622.1
Alteromonas macleodii MIT1002 763 nan Signal transduction histidine kinase (BaeS) (PDB:1JOY) VTP50621.1
Alteromonas macleodii MIT1002 764 nan DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain (OmpR) (PDB:1XHF) VTP50620.1
Alteromonas macleodii MIT1002 765 nan Multidrug efflux pump subunit AcrB (AcrB) (PDB:1IWG) VTP50619.1
Alteromonas macleodii MIT1002 766 K21137 nan Multidrug resistance efflux pump EmrA (EmrA) (PDB:4TKO) VTP50618.1
Alteromonas macleodii MIT1002 767 K12340 Pertussis pathogenicity signature, T1SS Outer membrane protein TolC (TolC) (PDB:1EK9) VTP50617.1
Alteromonas macleodii MIT1002 768 0.001328435 0.001656779 0.002145703 0.006259845 K13821 nan Proline dehydrogenase (PutA) (PDB:5KF6)!!!Delta 1-pyrroline-5-carboxylate dehydrogenase (PutA2) (PDB:5KF6) VTP50616.1
Alteromonas macleodii MIT1002 769 nan D-arabinose 1-dehydrogenase, Zn-dependent alcohol dehydrogenase family (AdhP) (PDB:5O8Q) VTP50615.1
Alteromonas macleodii MIT1002 770 K03719 nan DNA-binding transcriptional regulator, Lrp family (Lrp) (PDB:1I1G) VTP50614.1
Alteromonas macleodii MIT1002 771 0.00125337 1.4439E-4 1.91072E-4 0.002417446 K03406 nan Methyl-accepting chemotaxis protein (MCP) (Tar) (PDB:1QU7)!!!Signal transduction histidine kinase (PDB:2QHK) VTP50613.1
Alteromonas macleodii MIT1002 772 0.001417357 8.63967E-4 8.00825E-4 0.002109866 nan VTP50612.1
Alteromonas macleodii MIT1002 773 K05589 nan Cell division protein FtsB (FtsB) (PDB:4IFF) VTP50611.1
Alteromonas macleodii MIT1002 774 6.95151E-6 5.56122E-5 1.62202E-5 2.25924E-5 K00991 C5 isoprenoid biosynthesis, non-mevalonate pathway 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (IspD) (PDB:1H3M) VTP50610.1
Alteromonas macleodii MIT1002 775 2.61383E-5 2.25909E-4 4.76091E-5 5.60107E-6 K01770 C5 isoprenoid biosynthesis, non-mevalonate pathway 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (IspF) (PDB:1GX1) VTP50609.1
Alteromonas macleodii MIT1002 776 2.67951E-5 2.02181E-4 2.29789E-4 4.14107E-5 K06176 nan tRNA(Glu) U13 pseudouridine synthase TruD (TruD) (PDB:1SB7) VTP50608.1
Alteromonas macleodii MIT1002 777 4.16762E-6 5.69575E-5 1.41699E-4 1.04191E-5 K00573 nan Protein-L-isoaspartate O-methyltransferase (Pcm) (PDB:3LBF) (PUBMED:24909784) VTP50607.1
Alteromonas macleodii MIT1002 778 2.59536E-5 2.13735E-5 1.83202E-5 nan Uncharacterized membrane protein YqaA, VTT domain (YgaA) VTP50606.1
Alteromonas macleodii MIT1002 779 1.21712E-5 K06194 nan Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain (NlpD) (PDB:2GU1) VTP50605.1
Alteromonas macleodii MIT1002 780 4.92979E-5 1.32349E-4 2.66475E-6 K03087 nan DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) (RpoD) (PDB:1SIG) VTP50604.1
Alteromonas macleodii MIT1002 781 2.08134E-5 5.20336E-6 5.20336E-6 K00287 Tetrahydrofolate biosynthesis, GTP => THF Dihydrofolate reductase (FolA) (PDB:1DDR) VTP50603.1
Alteromonas macleodii MIT1002 782 nan VTP50602.1
Alteromonas macleodii MIT1002 783 nan VTP50601.1
Alteromonas macleodii MIT1002 784 0.002282802 0.003442856 0.019732472 K00518 nan VTP50600.1
Alteromonas macleodii MIT1002 785 nan Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains VTP50599.1
Alteromonas macleodii MIT1002 786 3.77411E-6 nan VTP50598.1
Alteromonas macleodii MIT1002 787 2.00998E-5 5.02496E-6 2.00998E-5 nan VTP50597.1
Alteromonas macleodii MIT1002 788 nan VTP50596.1
Alteromonas macleodii MIT1002 789 2.49113E-6 9.9645E-6 1.61923E-5 nan VTP50595.1
Alteromonas macleodii MIT1002 790 nan VTP55588.1
Alteromonas macleodii MIT1002 791 K12976 nan VTP50030.1
Alteromonas macleodii MIT1002 792 1.27445E-5 1.59306E-5 nan ABC-type amino acid transport/signal transduction system, periplasmic component/domain (HisJ) (PDB:1GGG) VTP50031.1
Alteromonas macleodii MIT1002 793 nan ABC-type amino acid transport/signal transduction system, periplasmic component/domain (HisJ) (PDB:1GGG) VTP50032.1
Alteromonas macleodii MIT1002 794 K14162 nan DNA polymerase III, alpha subunit (DnaE) (PDB:2HNH) VTP50033.1
Alteromonas macleodii MIT1002 795 K14161 nan Nucleotidyltransferase/DNA polymerase DinP involved in DNA repair (DinP) (PDB:4R8U) (PUBMED:16544291) VTP50034.1
Alteromonas macleodii MIT1002 796 K14160 nan Uncharacterized conserved protein VTP50035.1
Alteromonas macleodii MIT1002 797 2.08134E-5 4.68302E-5 1.30084E-5 2.08134E-5 nan VTP50036.1
Alteromonas macleodii MIT1002 798 6.92835E-4 2.07649E-4 3.86137E-4 3.09212E-4 nan Uncharacterized conserved protein, DUF885 family (PDB:3IUK) VTP50037.1
Alteromonas macleodii MIT1002 799 7.92223E-6 7.92223E-6 nan Uncharacterized conserved protein, DUF1820 domain VTP50038.1
Alteromonas macleodii MIT1002 800 3.20517E-4 2.52579E-4 4.35027E-4 8.42385E-4 K19701 nan Zn-dependent amino- or carboxypeptidase, M28 family (Iap) (PDB:1AMP) VTP50039.1
Alteromonas macleodii MIT1002 801 2.10447E-5 9.92104E-5 8.56818E-5 1.37542E-4 K05501 nan DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA (AcrR) (PDB:2QOP) VTP50040.1
Alteromonas macleodii MIT1002 802 2.16437E-4 9.8902E-5 1.29719E-4 2.15004E-5 K13038 Coenzyme A biosynthesis, pantothenate => CoA Phosphopantothenoylcysteine synthetase/decarboxylase CoaBC (CoaBC) (PDB:3QJG) VTP50041.1
Alteromonas macleodii MIT1002 803 K03630 nan DNA repair protein RadC, contains a helix-hairpin-helix DNA-binding motif (RadC) (PDB:2QLC) (PUBMED:9695921) VTP50042.1
Alteromonas macleodii MIT1002 804 nan VTP50043.1
Alteromonas macleodii MIT1002 805 0.001496333 3.35363E-4 3.18723E-4 3.70564E-4 nan VTP50044.1
Alteromonas macleodii MIT1002 806 5.0031E-4 3.42565E-4 2.943E-4 1.07713E-4 nan VTP50045.1
Alteromonas macleodii MIT1002 807 0.001772135 4.5434E-4 5.79545E-4 3.68078E-4 nan Membrane-associated phospholipid phosphatase (PgpB) (PDB:1D2T) VTP50046.1
Alteromonas macleodii MIT1002 808 0.00154453 0.002544153 0.001630963 0.003680942 K02902 nan Ribosomal protein L28 (RpmB) (PDB:2JZ6) VTP50047.1
Alteromonas macleodii MIT1002 809 0.003528964 0.003873814 0.003149629 0.002388086 K02913 nan Ribosomal protein L33 (RpmG) (PDB:1VS6) VTP50048.1
Alteromonas macleodii MIT1002 810 2.28407E-5 5.71018E-6 9.13628E-5 nan VTP50049.1
Alteromonas macleodii MIT1002 811 K10563 nan Formamidopyrimidine-DNA glycosylase (Nei) (PDB:1EE8) VTP50050.1
Alteromonas macleodii MIT1002 812 2.17128E-5 3.52833E-5 2.13509E-4 2.17128E-5 K00954 Coenzyme A biosynthesis, pantothenate => CoA Phosphopantetheine adenylyltransferase (CoaD) (PDB:3F3M) VTP50051.1
Alteromonas macleodii MIT1002 813 3.66403E-6 3.5419E-5 K11211 nan tRNA A-37 threonylcarbamoyl transferase component Bud32 (Bud32) (PDB:2VWB) VTP50052.1
Alteromonas macleodii MIT1002 814 4.48086E-5 2.24043E-5 1.40027E-4 nan ABC-type phosphate transport system, periplasmic component (PstS) (PDB:2Q9T) VTP50053.1
Alteromonas macleodii MIT1002 815 1.22946E-4 8.99609E-6 2.02412E-5 nan VTP50054.1
Alteromonas macleodii MIT1002 816 5.11344E-5 1.35038E-5 9.36264E-6 4.59129E-5 K21023 nan Cyclic di-GMP metabolism protein, combines GGDEF and EAL domains with a 6TM membrane domain VTP50055.1
Alteromonas macleodii MIT1002 817 5.91401E-4 0.001469295 0.001138611 0.001089267 K00639 nan 7-keto-8-aminopelargonate synthetase or related enzyme (BioF) (PDB:1BS0) VTP50056.1
Alteromonas macleodii MIT1002 818 4.0401E-4 3.96274E-4 6.62749E-4 1.09599E-4 K00060 nan Threonine dehydrogenase or related Zn-dependent dehydrogenase (Tdh) (PDB:4A2C) VTP50057.1
Alteromonas macleodii MIT1002 819 K02439 nan Rhodanese-related sulfurtransferase (PspE) (PDB:1TQ1) VTP50058.1
Alteromonas macleodii MIT1002 820 2.24693E-5 2.7576E-5 K02441 nan Membrane-associated serine protease, rhomboid family (GlpG) (PDB:2IC8) VTP50059.1
Alteromonas macleodii MIT1002 821 1.30515E-4 1.21956E-4 2.5675E-5 K02415 nan Flagellar basal body-associated protein FliL (FliL) VTP50060.1
Alteromonas macleodii MIT1002 822 K03181 Ubiquinone biosynthesis, prokaryotes, chorismate (+ polyprenyl-PP) => ubiquinol 4-hydroxybenzoate synthetase (chorismate-pyruvate lyase) (UbiC) (PDB:1FW9) VTP50061.1
Alteromonas macleodii MIT1002 823 K03179 Ubiquinone biosynthesis, prokaryotes, chorismate (+ polyprenyl-PP) => ubiquinol 4-hydroxybenzoate polyprenyltransferase (UbiA) (PDB:4OD4) (PUBMED:28830929) VTP50062.1
Alteromonas macleodii MIT1002 824 2.11896E-5 4.34387E-4 3.88476E-5 6.88661E-5 K09806 nan Ubiquinone biosynthesis accessory factor UbiK (UbiK) (PUBMED:28559279) VTP50063.1
Alteromonas macleodii MIT1002 825 5.24213E-6 7.42635E-6 6.11582E-6 3.27633E-6 K03656 nan Superfamily I DNA or RNA helicase (UvrD) (PDB:6PPR) VTP50064.1
Alteromonas macleodii MIT1002 826 1.15083E-5 1.65855E-4 8.69891E-5 2.64013E-5 K21023 nan GAF domain (GAF)!!!Cyclic di-GMP metabolism protein, combines GGDEF and EAL domains with a 6TM membrane domain VTP50065.1
Alteromonas macleodii MIT1002 827 0.003052816 0.003808421 0.005241464 7.88174E-4 nan Cytochrome c5 (CytC5) (PDB:1CC5) VTP50066.1
Alteromonas macleodii MIT1002 828 5.53758E-6 2.1412E-5 2.21503E-6 K07154 nan Serine/threonine protein kinase HipA, toxin component of the HipAB toxin-antitoxin module (HipA) (PDB:2WIU) VTP50067.1
Alteromonas macleodii MIT1002 829 nan VTP50068.1
Alteromonas macleodii MIT1002 830 K03315 nan Na+/H+ antiporter NhaC/MleN (NhaC) VTP50069.1
Alteromonas macleodii MIT1002 831 1.49298E-6 K03451 nan Choline-glycine betaine transporter (BetT) (PDB:2WIT) VTP50070.1
Alteromonas macleodii MIT1002 832 nan VTP50071.1
Alteromonas macleodii MIT1002 833 nan VTP50072.1
Alteromonas macleodii MIT1002 834 K07451 nan 5-methylcytosine-specific restriction endonuclease McrA (McrA) VTP50073.1
Alteromonas macleodii MIT1002 835 K07454 nan Predicted restriction endonuclease VTP50074.1
Alteromonas macleodii MIT1002 836 nan 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase (UbiG) (PDB:1BHJ) VTP50075.1
Alteromonas macleodii MIT1002 837 0.001848312 8.20069E-6 3.84381E-4 0.007198953 K16088 nan Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid (FhuE) (PDB:3EFM) VTP50076.1
Alteromonas macleodii MIT1002 838 1.86378E-5 2.03322E-5 nan VTP50077.1
Alteromonas macleodii MIT1002 839 5.41482E-6 2.16593E-6 2.16593E-6 K00249 beta-Oxidation Acyl-CoA dehydrogenase related to the alkylation response protein AidB (CaiA) (PDB:1BUC) VTP50078.1
Alteromonas macleodii MIT1002 840 1.14576E-5 K18297 Imipenem resistance, repression of porin OprD DNA-binding transcriptional regulator, LysR family (LysR) (PDB:2FYI) VTP50079.1
Alteromonas macleodii MIT1002 841 nan Glyoxylase or a related metal-dependent hydrolase, beta-lactamase superfamily II (GloB) (PDB:1QH3) (PUBMED:25670698) VTP50080.1
Alteromonas macleodii MIT1002 842 1.90752E-6 K06918 nan Ras-like GTP-binding stress-induced protein YcjX,  DUF463 family (YcjX) (PDB:6NZ4) (PUBMED:31202886) VTP50081.1
Alteromonas macleodii MIT1002 843 1.68744E-4 2.97083E-5 4.04034E-5 2.89954E-4 K08990 nan Uncharacterized membrane protein YcjF, UPF0283 family (YcjF) VTP50082.1
Alteromonas macleodii MIT1002 844 2.15531E-6 2.15531E-6 nan Uncharacterized membrane protein YjjP, DUF1212 family (YjjP)!!!Uncharacterized membrane protein YjjB, DUF3815 family (YjjB) VTP50083.1
Alteromonas macleodii MIT1002 845 2.33254E-6 K03150 Thiamine biosynthesis, prokaryotes, AIR (+ DXP/tyrosine) => TMP/TPP 2-iminoacetate synthase ThiH/Menaquinone biosynthesis enzymes MqnC and MqnE (ThiH) (PDB:4WCX) (PUBMED:18801996) VTP50084.1
Alteromonas macleodii MIT1002 846 4.29379E-5 1.04768E-4 K03149 Thiamine biosynthesis, prokaryotes, AIR (+ DXP/tyrosine) => TMP/TPP Thiazole synthase ThiGH, ThiG subunit (thiamin biosynthesis) (ThiG) (PDB:1TYG) VTP50085.1
Alteromonas macleodii MIT1002 847 K03154 Thiamine biosynthesis, prokaryotes, AIR (+ DXP/tyrosine) => TMP/TPP Sulfur carrier protein ThiS (thiamine biosynthesis) (ThiS) (PDB:1F0Z) VTP50086.1
Alteromonas macleodii MIT1002 848 K03148 Thiamine biosynthesis, prokaryotes, AIR (+ DXP/tyrosine) => TMP/TPP Molybdopterin or thiamine biosynthesis adenylyltransferase (ThiF) (PDB:1ZUD) (PUBMED:32239579) VTP50087.1
Alteromonas macleodii MIT1002 849 3.29969E-6 4.45458E-5 1.0559E-4 K14153 Thiamine biosynthesis, prokaryotes, AIR (+ DXP/tyrosine) => TMP/TPP Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase (ThiD) (PDB:1Y9X) (PUBMED:17351295)!!!Thiamine monophosphate synthase (ThiE) (PDB:1G4T) (PUBMED:19060138) VTP50088.1
Alteromonas macleodii MIT1002 850 1.38265E-6 K03147 Thiamine biosynthesis, prokaryotes, AIR (+ DXP/tyrosine) => TMP/TPP 4-amino-2-methyl-5-hydroxymethylpyrimidine (HMP) synthase ThiC (ThiC) (PDB:3EPN) (PUBMED:15326535) VTP50089.1
Alteromonas macleodii MIT1002 851 0.002900488 4.01825E-4 4.31812E-4 0.001407887 K02498 nan Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) (HemYx) VTP50090.1
Alteromonas macleodii MIT1002 852 0.005821111 6.08041E-4 0.001197292 0.003449826 K02496 Siroheme biosynthesis, glutamyl-tRNA => siroheme Proteobacterial HemX domain, involved in 2-ketogluconate production (unrelated to B. subtilis HemX, COG0755, no evidence of involvement in heme biosynthesis) (HemX) (PUBMED:26256849) VTP50091.1
Alteromonas macleodii MIT1002 853 K01719 Siroheme biosynthesis, glutamyl-tRNA => siroheme Uroporphyrinogen-III synthase (HemD) (PDB:1JR2) VTP50092.1
Alteromonas macleodii MIT1002 854 4.69748E-4 0.00100526 9.26342E-4 5.98928E-4 K01749 Siroheme biosynthesis, glutamyl-tRNA => siroheme Porphobilinogen deaminase (HemC) (PDB:1AH5) VTP50093.1
Alteromonas macleodii MIT1002 855 9.63235E-5 6.22781E-5 K21022 nan GGDEF domain, diguanylate cyclase (c-di-GMP synthetase) or its enzymatically inactive variants (GGDEF) (PDB:6D9M) VTP50094.1
Alteromonas macleodii MIT1002 856 K06999 nan Predicted esterase (YpfH) VTP50095.1
Alteromonas macleodii MIT1002 857 nan VTP53771.1
Alteromonas macleodii MIT1002 858 nan VTP53769.1
Alteromonas macleodii MIT1002 859 nan Uncharacterized conserved protein (PDB:1X6M) VTP53767.1
Alteromonas macleodii MIT1002 860 7.51597E-6 1.00213E-5 1.00213E-5 K00499 Betaine biosynthesis, choline => betaine Phenylpropionate dioxygenase or related ring-hydroxylating dioxygenase, large terminal subunit (HcaE) (PDB:4QDC) VTP53765.1
Alteromonas macleodii MIT1002 861 2.87375E-5 1.1495E-5 nan Predicted Co/Zn/Cd cation transporter, cation efflux family VTP53763.1
Alteromonas macleodii MIT1002 862 nan VTP53761.1
Alteromonas macleodii MIT1002 863 4.93103E-5 1.00447E-5 K21973 nan EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant) (EAL) (PDB:2BAS) VTP53759.1
Alteromonas macleodii MIT1002 864 nan VTP53757.1
Alteromonas macleodii MIT1002 865 1.37616E-6 5.50465E-6 K03722 nan Rad3-related DNA helicase DinG (DinG) (PDB:5H8W) VTP53755.1
Alteromonas macleodii MIT1002 866 3.32534E-5 8.37494E-5 K14742 nan tRNA A37 threonylcarbamoyladenosine modification protein TsaB (TsaB) (PDB:1OKJ) VTP53753.1
Alteromonas macleodii MIT1002 867 nan VTP53751.1
Alteromonas macleodii MIT1002 868 4.72778E-4 3.9173E-5 1.0131E-4 3.66741E-4 K07285 nan Starvation-inducible outer membrane lipoprotein Slp (Slp) VTP53749.1
Alteromonas macleodii MIT1002 869 1.26074E-5 nan 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase MenH and related esterases, alpha/beta hydrolase fold (MenH) (PDB:4MYS) VTP53747.1
Alteromonas macleodii MIT1002 870 8.48989E-4 2.34498E-4 9.1774E-4 7.39468E-4 K01897 beta-Oxidation, acyl-CoA synthesis O-succinylbenzoic acid-CoA ligase MenE or related acyl-CoA synthetase (AMP-forming) (MenE/FadK) (PDB:5EY9) (PUBMED:25151136;27455459) VTP53745.1
Alteromonas macleodii MIT1002 871 5.71018E-6 2.58861E-5 K03684 nan Ribonuclease D (Rnd) (PDB:5C0Y) (PUBMED:18821773) VTP53743.1
Alteromonas macleodii MIT1002 872 3.58925E-5 K09902 nan Uncharacterized conserved protein YcgL, UPF0745 family (YcgL) (PDB:2H7A) (PUBMED:17221885) VTP53741.1
Alteromonas macleodii MIT1002 873 2.44269E-6 K08305 nan Membrane-bound lytic murein transglycosylase B (MltB) (PDB:1D0K) VTP53739.1
Alteromonas macleodii MIT1002 874 1.58445E-5 3.16889E-5 8.71445E-5 2.57473E-5 nan 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) (YcgM) (PDB:1GTT) VTP53737.1
Alteromonas macleodii MIT1002 875 K09160 nan Uncharacterized cysteine cluster protein YcgN, CxxCxxCC family (YcgN) VTP53735.1
Alteromonas macleodii MIT1002 876 K03790 nan Protein N-acetyltransferase, RimJ/RimL family (RimL) (PDB:1S7F) VTP53733.1
Alteromonas macleodii MIT1002 877 K03611 nan Disulfide bond formation protein DsbB (DsbB) (PDB:2LTQ) VTP53731.1
Alteromonas macleodii MIT1002 878 4.0612E-4 6.88054E-5 7.71965E-5 K03314 nan Na+/H+ antiporter NhaB (NhaB) VTP53729.1
Alteromonas macleodii MIT1002 879 2.34746E-4 4.53346E-4 5.7755E-4 4.1919E-4 K03603 nan DNA-binding transcriptional regulator, FadR family (FadR) (PDB:1E2X) VTP53727.1
Alteromonas macleodii MIT1002 880 8.30446E-4 1.09972E-4 1.55254E-4 3.86315E-4 K01354 nan Protease II (PtrB) (PDB:4BP9) VTP53725.1
Alteromonas macleodii MIT1002 881 4.08893E-4 0.001630647 0.001037013 0.002811759 nan VTP53723.1
Alteromonas macleodii MIT1002 882 1.64808E-5 1.62453E-4 1.41264E-5 2.29554E-4 nan VTP53721.1
Alteromonas macleodii MIT1002 883 nan VTP53719.1
Alteromonas macleodii MIT1002 884 1.17611E-5 1.8094E-6 7.23759E-6 2.62362E-5 K14674 Triacylglycerol biosynthesis Predicted acylesterase/phospholipase RssA, containd patatin domain (RssA) (PDB:5FQU) VTP53717.1
Alteromonas macleodii MIT1002 885 4.0833E-5 1.96873E-5 8.74992E-6 nan Uncharacterized membrane protein YheB, UPF0754 family (YheB) VTP53715.1
Alteromonas macleodii MIT1002 886 nan DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA (AcrR) (PDB:2QOP) VTP53713.1
Alteromonas macleodii MIT1002 887 1.37688E-4 3.05973E-5 3.73287E-5 2.2948E-5 K00635 nan Uncharacterized conserved protein, contains a NRPS condensation (elongation) domain VTP53711.1
Alteromonas macleodii MIT1002 888 nan VTP53709.1
Alteromonas macleodii MIT1002 889 1.50825E-4 3.73065E-5 2.66475E-5 1.15917E-4 K00108 Betaine biosynthesis, choline => betaine Choline dehydrogenase or related flavoprotein (BetA) (PDB:1B4V) VTP53707.1
Alteromonas macleodii MIT1002 890 K18476 nan DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA (AcrR) (PDB:2QOP) VTP53705.1
Alteromonas macleodii MIT1002 891 3.15185E-6 nan Enoyl-CoA hydratase/carnithine racemase (CaiD) (PDB:1DCI) VTP53703.1
Alteromonas macleodii MIT1002 892 2.45706E-5 5.17275E-6 K00219 nan NADPH-dependent glutamate synthase beta chain or related oxidoreductase (GltD) (PDB:1H7X)!!!2,4-dienoyl-CoA reductase or related NADH-dependent reductase, Old Yellow Enzyme (OYE) family (FadH) (PDB:1BWK) VTP53701.1
Alteromonas macleodii MIT1002 893 1.18234E-4 nan VTP53699.1
Alteromonas macleodii MIT1002 894 2.13958E-6 9.9847E-6 K06985 nan Predicted aspartyl protease (PDB:5C9F) VTP53697.1
Alteromonas macleodii MIT1002 895 K07107 nan Acyl-CoA thioesterase FadM (FadM) (PDB:2FUJ) VTP53695.1
Alteromonas macleodii MIT1002 896 2.11147E-5 1.49045E-5 1.49045E-5 1.49045E-5 nan VTP53693.1
Alteromonas macleodii MIT1002 897 K09906 nan Elongation factor P hydroxylase EpmC (EF-P beta-lysylation pathway) (EpmC) (PDB:3WTR) VTP53691.1
Alteromonas macleodii MIT1002 898 1.47697E-5 nan NAD kinase VTP53689.1
Alteromonas macleodii MIT1002 899 nan VTP53687.1
Alteromonas macleodii MIT1002 900 0.006201602 0.00115395 0.004383731 0.010990654 K07263 nan Predicted Zn-dependent peptidase, M16 family (PqqL) (PDB:6OFS) VTP53685.1
Alteromonas macleodii MIT1002 901 nan Signal transduction histidine kinase (BaeS) (PDB:1JOY)!!!CheY-like REC (receiver) domain, includes chemotaxis protein CheY  and sporulation regulator Spo0F (CheY) (PDB:6QRJ)!!!Periplasmic ligand-binding sensor domain (PDB:4A2L) VTP53683.1
Alteromonas macleodii MIT1002 902 K02106 nan Short chain fatty acids transporter (AtoE) VTP53681.1
Alteromonas macleodii MIT1002 903 nan Nicotinamidase-related amidase (PncA) (PDB:1ILW) VTP53679.1
Alteromonas macleodii MIT1002 904 nan Nicotinamidase-related amidase (PncA) (PDB:1ILW) VTP53677.1
Alteromonas macleodii MIT1002 905 nan Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH domain (GlxA) VTP53675.1
Alteromonas macleodii MIT1002 906 5.49607E-5 5.64261E-5 4.32356E-5 2.19842E-6 nan Zinc metallochaperone YeiR/ZagA and related GTPases, G3E family (YejR) (PDB:1NIJ) (PUBMED:19822009;31132310) VTP53673.1
Alteromonas macleodii MIT1002 907 2.32432E-5 2.19519E-5 nan VTP53671.1
Alteromonas macleodii MIT1002 908 K05776 nan ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA (ModF) (PDB:2IHY) VTP53669.1
Alteromonas macleodii MIT1002 909 K00657 GABA biosynthesis, eukaryotes, putrescine => GABA Ribosomal protein S18 acetylase RimI and related acetyltransferases (RimI) (PDB:1GHE) VTP53667.1
Alteromonas macleodii MIT1002 910 nan Zn-dependent glyoxalase, PhnB family (PhnB) (PDB:5KEF) (PUBMED:28034013) VTP53665.1
Alteromonas macleodii MIT1002 911 nan Predicted N-acetyltransferase YhbS (yhbS) (PDB:4ZBG) VTP53663.1
Alteromonas macleodii MIT1002 912 1.33961E-4 2.40068E-4 7.42753E-5 3.83977E-4 nan TolB amino-terminal domain (function unknown) (TolBN) (PDB:1C5K) (PUBMED:10673426;24821816) VTP53661.1
Alteromonas macleodii MIT1002 913 1.8926E-4 5.05463E-4 8.53979E-5 2.21573E-4 nan TolB amino-terminal domain (function unknown) (TolBN) (PDB:1C5K) (PUBMED:10673426;24821816) VTP53659.1
Alteromonas macleodii MIT1002 914 3.64883E-6 2.37174E-5 nan TolB amino-terminal domain (function unknown) (TolBN) (PDB:1C5K) (PUBMED:10673426;24821816) VTP53657.1
Alteromonas macleodii MIT1002 915 1.28001E-6 K15461 nan Glycine/D-amino acid oxidase (deaminating) (DadA) (PDB:3AWI)!!!tRNA U34 5-methylaminomethyl-2-thiouridine-forming methyltransferase MnmC (MnmC) (PDB:3AWI) VTP53653.1
Alteromonas macleodii MIT1002 916 8.29592E-6 nan N-acetylneuraminic acid mutarotase (NanM) (PDB:2UVK) (PUBMED:18063573) VTP53651.1
Alteromonas macleodii MIT1002 917 nan O-succinylbenzoic acid-CoA ligase MenE or related acyl-CoA synthetase (AMP-forming) (MenE/FadK) (PDB:5EY9) (PUBMED:25151136;27455459) VTP53649.1
Alteromonas macleodii MIT1002 918 nan O-succinylbenzoic acid-CoA ligase MenE or related acyl-CoA synthetase (AMP-forming) (MenE/FadK) (PDB:5EY9) (PUBMED:25151136;27455459) VTP53648.1
Alteromonas macleodii MIT1002 919 0.002119334 0.001962614 0.002110627 0.001255928 K00647 Fatty acid biosynthesis, elongation 3-oxoacyl-(acyl-carrier-protein) synthase (FabB) (PDB:2UV8) (PUBMED:21652641) VTP53647.1
Alteromonas macleodii MIT1002 920 nan Transposase VTP53646.1
Alteromonas macleodii MIT1002 921 nan Transposase VTP54239.1
Alteromonas macleodii MIT1002 922 nan Glycosyltransferase, catalytic subunit of cellulose synthase and poly-beta-1,6-N-acetylglucosamine synthase (BcsA) (PDB:4HG6) VTP54237.1
Alteromonas macleodii MIT1002 923 1.30778E-4 3.26077E-5 7.38876E-5 6.03589E-5 nan VTP54235.1
Alteromonas macleodii MIT1002 924 4.43684E-5 5.09146E-5 1.09103E-5 2.18205E-6 K21001 nan Glycosyltransferase involved in cell wall bisynthesis (RfaB) (PDB:2IV7) VTP54233.1
Alteromonas macleodii MIT1002 925 4.05862E-5 1.80383E-5 4.05862E-5 nan Acetyltransferase, isoleucine patch superfamily (WbbJ) VTP54231.1
Alteromonas macleodii MIT1002 926 nan Acetyltransferase involved in cellulose biosynthesis, CelD/BcsL family (BcsL) VTP54229.1
Alteromonas macleodii MIT1002 927 0.007333261 0.001695366 0.001737286 0.002585945 nan VTP54227.1
Alteromonas macleodii MIT1002 928 nan VTP54225.1
Alteromonas macleodii MIT1002 929 2.8675E-5 1.03018E-4 4.77917E-5 nan N-acyl-homoserine lactone synthase LasI (autoinducer biosynthesis) (LasI) (PDB:1K4J) VTP54223.1
Alteromonas macleodii MIT1002 930 2.25924E-5 1.3903E-5 3.47576E-5 5.56122E-5 nan Lipid carrier protein ElyC involved in cell wall biogenesis, DUF218 family (ElyC) (PDB:3CA8) (PUBMED:24391520) VTP54221.1
Alteromonas macleodii MIT1002 931 4.21153E-5 2.47076E-5 6.85075E-5 1.34769E-5 nan Periplasmic serine protease, S1-C subfamily, contain C-terminal PDZ domain (DegQ) (PDB:2HGA) (PUBMED:29686141) VTP54219.1
Alteromonas macleodii MIT1002 932 1.1477E-4 7.22029E-5 1.34168E-4 5.23741E-4 K05797 nan FAD/FMN-containing lactate dehydrogenase/glycolate oxidase (GlcD) (PDB:1AHU) VTP54217.1
Alteromonas macleodii MIT1002 933 0.001353947 6.82402E-4 8.09576E-4 0.001419085 nan VTP54215.1
Alteromonas macleodii MIT1002 934 2.86439E-6 nan Serine kinase of the HPr protein, regulates carbohydrate metabolism (HprK) (PDB:1JB1) VTP54213.1
Alteromonas macleodii MIT1002 935 1.51615E-5 6.99762E-6 9.33016E-6 9.33016E-6 nan VTP54211.1
Alteromonas macleodii MIT1002 936 2.59301E-4 5.90581E-4 8.20396E-4 1.27482E-4 K08679 nan Nucleoside-diphosphate-sugar epimerase (WcaG) (PDB:2X4G) VTP54209.1
Alteromonas macleodii MIT1002 937 1.19642E-5 K07001 nan Predicted acylesterase/phospholipase RssA, containd patatin domain (RssA) (PDB:5FQU) VTP54207.1
Alteromonas macleodii MIT1002 938 0.025168031 3.248E-5 0.011545657 0.019378562 K01638 Glyoxylate cycle Malate synthase (AceB) (PDB:1D8C) VTP54205.1
Alteromonas macleodii MIT1002 939 8.44827E-4 5.78777E-4 0.001016594 0.00141847 nan DNA-binding transcriptional regulator, LysR family (LysR) (PDB:2FYI) VTP54203.1
Alteromonas macleodii MIT1002 940 0.22029781 1.1758E-4 0.038241163 0.16584189 K01637 Glyoxylate cycle Isocitrate lyase (AceA) (PDB:1DQU) VTP54201.1
Alteromonas macleodii MIT1002 941 K03415 nan CheY-like REC (receiver) domain, includes chemotaxis protein CheY  and sporulation regulator Spo0F (CheY) (PDB:6QRJ)!!!Chemotaxis signal transduction protein CheW (CheW) (PDB:2QDL) VTP54199.1
Alteromonas macleodii MIT1002 942 0.003983367 0.001585363 0.002633932 0.004744473 K01077 Tetrahydrofolate biosynthesis, GTP => THF Alkaline phosphatase (PhoA) (PDB:1AJA) VTP54197.1
Alteromonas macleodii MIT1002 943 2.87375E-6 2.87375E-6 1.43687E-5 K01425 nan Glutaminase (GlsA) (PDB:1MKI) VTP54195.1
Alteromonas macleodii MIT1002 944 1.93693E-6 1.93693E-6 nan Predicted lipocalin, contains AttH/CrtC domain (CrtC) (PDB:2ICH) (PUBMED:20944205) VTP54193.1
Alteromonas macleodii MIT1002 945 8.99149E-7 K02004 nan ABC-type antimicrobial peptide transport system, permease component (SalY) VTP54191.1
Alteromonas macleodii MIT1002 946 3.66403E-6 K02003 nan ABC-type lipoprotein export system, ATPase component (LolD) (PDB:5GKO) VTP54189.1
Alteromonas macleodii MIT1002 947 3.3967E-5 3.77411E-6 nan VTP54187.1
Alteromonas macleodii MIT1002 948 nan Membrane-associated serine protease, rhomboid family (GlpG) (PDB:2IC8) VTP54185.1
Alteromonas macleodii MIT1002 949 2.26641E-6 1.13321E-5 nan Glutathionylspermidine synthase, CHAP domain (Gsp) (PDB:2IO7) VTP54183.1
Alteromonas macleodii MIT1002 950 2.16541E-4 7.52612E-5 6.7339E-5 3.96112E-5 nan Uncharacterized conserved protein YgiB, UPF0441/DUF1190 family, involved in bioifilm formation (YgiB) VTP54181.1
Alteromonas macleodii MIT1002 951 K08989 nan Uncharacterized membrane protein YjfL, UPF0719 family (YjfL) VTP54179.1
Alteromonas macleodii MIT1002 952 3.69827E-5 1.23276E-4 7.80747E-5 8.42386E-5 nan VTP54177.1
Alteromonas macleodii MIT1002 953 8.18403E-5 7.51597E-5 4.6766E-5 1.81635E-4 K10716 nan Trk/Ktr K+ transport system regulatory component TrkA/KtrA/KtrC, RCK domain (TrkA) (PDB:4XTT) (PUBMED:23815639;25957408;31868587;32095817) VTP54175.1
Alteromonas macleodii MIT1002 954 5.94027E-4 3.15171E-4 0.00100388 0.002692576 nan Phage shock protein A (PspA) (PDB:4WHE) VTP54173.1
Alteromonas macleodii MIT1002 955 K09980 nan Uncharacterized conserved protein YjfI, DUF2170 family (YjfI) (PUBMED:15972856) VTP54171.1
Alteromonas macleodii MIT1002 956 nan VTP54169.1
Alteromonas macleodii MIT1002 957 2.52692E-6 7.41229E-5 1.45719E-4 1.26346E-5 K07568 nan S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) (QueA) (PDB:1VKY) VTP54167.1
Alteromonas macleodii MIT1002 958 6.10011E-4 0.001410949 0.001263595 1.77062E-4 K00773 nan Queuine/archaeosine tRNA-ribosyltransferase (Tgt) (PDB:1XW8) (PUBMED:15805528) VTP54165.1
Alteromonas macleodii MIT1002 959 0.00120682 0.001568601 0.001344138 0.002226146 K03210 nan Protein translocase subunit YajC (YajC) VTP54163.1
Alteromonas macleodii MIT1002 960 0.002028942 0.001763031 0.001281814 0.002214173 K03072 nan Preprotein translocase subunit SecD (SecD) (PDB:3AQP) (PUBMED:26100040) VTP54161.1
Alteromonas macleodii MIT1002 961 2.66901E-4 1.37665E-4 1.73251E-4 4.28446E-4 K03074 nan Preprotein translocase subunit SecF (SecF) (PDB:2FYH) (PUBMED:28830929) VTP54159.1
Alteromonas macleodii MIT1002 962 2.9509E-6 2.9509E-6 nan DNA-binding response regulator, LytR/AlgR family (LytT) (PDB:3BS1) VTP54157.1
Alteromonas macleodii MIT1002 963 K11941 nan Peptidoglycan/LPS O-acetylase OafA/YrhL, contains acyltransferase and SGNH-hydrolase domains (OafA) VTP54155.1
Alteromonas macleodii MIT1002 964 0.001288376 4.78312E-4 0.001948469 0.001588315 K01092 Inositol phosphate metabolism, Ins(1,3,4,5)P4 => Ins(1,3,4)P3 => myo-inositol Archaeal fructose-1,6-bisphosphatase or related enzyme, inositol monophosphatase family (SuhB) (PDB:1AWB) VTP54153.1
Alteromonas macleodii MIT1002 965 8.65519E-5 4.54686E-4 5.2739E-4 5.53932E-5 K15396 nan tRNA C32,U32 (ribose-2'-O)-methylase TrmJ or a related methyltransferase (TrmJ) (PDB:3ONP) VTP54151.1
Alteromonas macleodii MIT1002 966 1.86143E-4 1.05909E-4 3.20937E-5 1.44422E-4 K00640 Cysteine biosynthesis, serine => cysteine Serine acetyltransferase (CysE) (PDB:1T3D) VTP54149.1
Alteromonas macleodii MIT1002 967 K10215 nan Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD (CzcO) (PDB:4USQ) VTP54147.1
Alteromonas macleodii MIT1002 968 nan 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase MenH and related esterases, alpha/beta hydrolase fold (MenH) (PDB:4MYS) VTP54145.1
Alteromonas macleodii MIT1002 969 K13643 nan DNA-binding transcriptional regulator, IscR family (IscR) (PDB:1XD7) VTP54143.1
Alteromonas macleodii MIT1002 970 1.43539E-5 6.79923E-6 8.31016E-5 1.47317E-5 K04487 nan Cysteine desulfurase/Cysteine sulfinate desulfinase IscS or related enzyme, NifS family (NifS) (PDB:4IXO) (PUBMED:22773787;25825430) VTP54141.1
Alteromonas macleodii MIT1002 971 3.80201E-4 9.51728E-4 0.001033287 5.56503E-4 K09014 nan Fe-S cluster assembly scaffold protein SufB (SufB) (PDB:1VH4) VTP54139.1
Alteromonas macleodii MIT1002 972 0.001458661 4.83131E-4 0.002810732 0.001392042 K09013 nan Fe-S cluster assembly ATPase SufC (SufC) (PDB:2D3W) VTP54137.1
Alteromonas macleodii MIT1002 973 1.08694E-4 1.3464E-4 1.80221E-4 2.10375E-4 K09015 nan Fe-S cluster assembly scaffold protein SufB (SufB) (PDB:1VH4) VTP54135.1
Alteromonas macleodii MIT1002 974 3.47404E-5 2.0989E-5 2.88056E-4 1.22678E-4 K11717 nan Selenocysteine lyase/Cysteine desulfurase (CsdA) (PDB:4LW2) VTP54133.1
Alteromonas macleodii MIT1002 975 1.86307E-5 6.70704E-5 nan Fe-S cluster assembly iron-binding protein IscA (IscA) (PDB:1R94) VTP54131.1
Alteromonas macleodii MIT1002 976 7.94908E-5 4.47136E-5 nan Metal-sulfur cluster biosynthetic enzyme (PaaD) (PDB:1UWD) VTP54129.1
Alteromonas macleodii MIT1002 977 K02426 nan Sulfur transfer protein SufE, Fe-S cluster assembly (SufE) (PDB:1MZG) VTP54127.1
Alteromonas macleodii MIT1002 978 0.004521875 0.00968739 0.007973751 0.010346403 K00940 Adenine ribonucleotide biosynthesis, IMP => ADP,ATP Nucleoside diphosphate kinase (Ndk) (PDB:1B4S) VTP54125.1
Alteromonas macleodii MIT1002 979 2.75787E-4 2.5924E-4 6.09884E-4 2.13932E-4 K01251 Methionine degradation S-adenosylhomocysteine hydrolase (SAM1) (PDB:1A7A) VTP55064.1
Alteromonas macleodii MIT1002 980 8.34778E-4 0.001234623 0.00187496 0.001425409 K01271 nan Xaa-Pro aminopeptidase (PepP) (PDB:1A16) VTP55062.1
Alteromonas macleodii MIT1002 981 6.20365E-6 3.87728E-6 1.55091E-6 K08997 nan Protein adenylyltransferase (AMPylase) SelO/YdiU (selenoprotein O) (SelO) (PDB:6EAC) (PUBMED:30270044) VTP55060.1
Alteromonas macleodii MIT1002 982 4.55027E-5 K03324 nan Na+/phosphate symporter (NptA) VTP55058.1
Alteromonas macleodii MIT1002 983 4.07011E-4 K07576 nan RNA processing exonuclease, beta-lactamase fold, Cft2 family (YSH1) (PDB:2DKF) VTP55056.1
Alteromonas macleodii MIT1002 984 7.92221E-5 6.49623E-5 7.92221E-5 4.278E-5 nan VTP55054.1
Alteromonas macleodii MIT1002 985 K23242 nan Putative Mn2+ efflux pump MntP (MntP) VTP55052.1
Alteromonas macleodii MIT1002 986 3.1786E-4 6.25453E-5 7.93486E-5 2.21942E-4 nan Outer membrane cobalamin receptor protein BtuB (BtuB) (PDB:1NQE) VTP55050.1
Alteromonas macleodii MIT1002 987 nan VTP55048.1
Alteromonas macleodii MIT1002 988 nan Permease of the drug/metabolite transporter (DMT) superfamily (RhaT) (PDB:5I20) VTP55046.1
Alteromonas macleodii MIT1002 989 K02440 nan Glycerol uptake facilitator or related aquaporin (Major Intrinsic protein Family) (GlpF) (PDB:1FQY) VTP55044.1
Alteromonas macleodii MIT1002 990 nan VTP55042.1
Alteromonas macleodii MIT1002 991 6.37223E-6 2.54889E-5 3.18611E-5 nan VTP55040.1
Alteromonas macleodii MIT1002 992 7.99425E-6 7.19482E-5 1.27908E-4 nan VTP55038.1
Alteromonas macleodii MIT1002 993 1.46561E-5 9.01915E-6 1.27771E-5 nan Acetyl-CoA acetyltransferase (PaaJ) (PDB:1AFW) VTP55036.1
Alteromonas macleodii MIT1002 994 K07645 nan Signal transduction histidine kinase (BaeS) (PDB:1JOY) VTP55034.1
Alteromonas macleodii MIT1002 995 nan DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain (OmpR) (PDB:1XHF) VTP55032.1
Alteromonas macleodii MIT1002 996 K02199 nan Thiol-disulfide isomerase or thioredoxin (TrxA) (PDB:1XFL) VTP55030.1
Alteromonas macleodii MIT1002 997 K03805 nan Protein thiol-disulfide isomerase DsbC (DsbG) (PDB:2HI7) VTP55028.1
Alteromonas macleodii MIT1002 998 nan NADPH:quinone reductase or related Zn-dependent oxidoreductase (Qor) (PDB:2VCY) VTP55026.1
Alteromonas macleodii MIT1002 999 4.5992E-6 3.67936E-6 1.65571E-5 nan PepSY-associated TM region (PiuB) (PUBMED:15124630) VTP55024.1
Alteromonas macleodii MIT1002 1000 nan VTP55022.1
Alteromonas macleodii MIT1002 1001 8.10756E-4 1.38035E-5 1.50621E-4 0.001915243 K02014 nan Outer membrane receptor for monomeric catechols (Fiu) VTP55020.1
Alteromonas macleodii MIT1002 1002 K11744 nan Predicted PurR-regulated permease PerM (PerM) VTP55018.1
Alteromonas macleodii MIT1002 1003 9.71677E-6 2.42919E-6 2.42919E-6 K00118 nan Predicted dehydrogenase (MviM) (PDB:3UUW) VTP55016.1
Alteromonas macleodii MIT1002 1004 nan ADP-ribosylglycohydrolase (DraG) (PDB:1T5J) VTP55014.1
Alteromonas macleodii MIT1002 1005 nan Predicted lipase (Lip2) (PDB:1DT3) VTP55012.1
Alteromonas macleodii MIT1002 1006 K07497 nan Transposase InsO and inactivated derivatives (Tra5)!!!Transposase InsE and inactivated derivatives (InsE) (PDB:2JN6) (PUBMED:23818957) VTP55010.1
Alteromonas macleodii MIT1002 1007 K07168 nan CBS-domain-containing membrane protein VTP55008.1
Alteromonas macleodii MIT1002 1008 6.6872E-6 K12266 nan FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis domains (FhlA) VTP55006.1
Alteromonas macleodii MIT1002 1009 K05916 nan Hemoglobin-like flavoprotein (Hmp) (PDB:3OZU)!!!Flavodoxin/ferredoxin--NADP reductase (Fpr) (PDB:3OZU) VTP55004.1
Alteromonas macleodii MIT1002 1010 K06140 nan Transcription elongation factor, GreA/GreB family (GreA) (PDB:1GRJ) VTP55002.1
Alteromonas macleodii MIT1002 1011 1.95415E-6 2.80094E-5 1.95415E-6 K00262 nan Glutamate dehydrogenase/leucine dehydrogenase (GdhA) (PDB:1B3B) (PUBMED:24391520) VTP55000.1
Alteromonas macleodii MIT1002 1012 K07492 nan Transposase VTP54998.1
Alteromonas macleodii MIT1002 1013 1.37654E-5 9.77073E-5 1.40353E-5 1.61946E-6 nan VTP54996.1
Alteromonas macleodii MIT1002 1014 nan VTP54994.1
Alteromonas macleodii MIT1002 1015 nan VTP54992.1
Alteromonas macleodii MIT1002 1016 nan Divalent metal cation (Fe/Co/Zn/Cd) efflux pump (FieF) (PDB:2QFI) VTP54990.1
Alteromonas macleodii MIT1002 1017 K07089 nan Uncharacterized membrane protein YraQ, UPF0718 family (YraQ) VTP54988.1
Alteromonas macleodii MIT1002 1018 K07484 nan Transposase VTP54986.1
Alteromonas macleodii MIT1002 1019 K00986 nan Retron-type reverse transcriptase (YkfC) VTP54984.1
Alteromonas macleodii MIT1002 1020 nan Transposase VTP54982.1
Alteromonas macleodii MIT1002 1021 K07484 nan Transposase VTP54980.1
Alteromonas macleodii MIT1002 1022 nan VTP54978.1
Alteromonas macleodii MIT1002 1023 nan Uncharacterized membrane protein YraQ, UPF0718 family (YraQ) VTP54976.1
Alteromonas macleodii MIT1002 1024 nan Integrase/recombinase, includes phage integrase (FimB) VTP54975.1
Alteromonas macleodii MIT1002 1025 nan Predicted nucleic acid-binding protein, contains PIN domain VTP54973.1
Alteromonas macleodii MIT1002 1026 3.37585E-5 1.23507E-5 K18831 nan Transcriptional regulator, contains XRE-family HTH domain (HipB) (PDB:1ADR)!!!Zn-dependent peptidase ImmA, M78 family (ImmA) (PDB:3DTE) VTP54971.1
Alteromonas macleodii MIT1002 1027 nan VTP54969.1
Alteromonas macleodii MIT1002 1028 nan VTP55588.1
Alteromonas macleodii MIT1002 1029 4.69345E-4 2.53865E-4 5.90607E-4 8.5843E-4 K01698 Siroheme biosynthesis, glutamyl-tRNA => siroheme Delta-aminolevulinic acid dehydratase, porphobilinogen synthase (HemB) (PDB:1I8J) VTP50495.1
Alteromonas macleodii MIT1002 1030 5.56562E-6 K20971 nan GGDEF domain, diguanylate cyclase (c-di-GMP synthetase) or its enzymatically inactive variants (GGDEF) (PDB:6D9M) VTP50494.1
Alteromonas macleodii MIT1002 1031 1.36336E-5 1.36336E-5 1.36336E-5 K03424 nan 3'->5' ssDNA/RNA exonuclease TatD (TatD) (PDB:1J6O) (PUBMED:10747959;25114049) VTP50493.1
Alteromonas macleodii MIT1002 1032 4.88536E-5 2.37755E-4 3.41976E-5 nan VTP50492.1
Alteromonas macleodii MIT1002 1033 K03118 nan Twin-arginine protein secretion pathway component TatC (TatC) (PDB:4B4A) VTP50491.1
Alteromonas macleodii MIT1002 1034 3.553E-5 K03117 nan Twin-arginine protein secretion pathway components TatA and TatB (TatA) (PDB:2L16) VTP50490.1
Alteromonas macleodii MIT1002 1035 5.4543E-4 4.08145E-4 6.01086E-4 0.001213304 K03116 nan Twin-arginine protein secretion pathway components TatA and TatB (TatA) (PDB:2L16) VTP50489.1
Alteromonas macleodii MIT1002 1036 nan VTP50488.1
Alteromonas macleodii MIT1002 1037 0.003137299 0.002458676 0.003073345 0.003735979 K01653 Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine Acetolactate synthase, small subunit (IlvH) (PDB:2F1F) VTP50487.1
Alteromonas macleodii MIT1002 1038 0.010334104 0.012928647 0.018665547 0.006885047 K01652 Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine Acetolactate synthase large subunit or other thiamine pyrophosphate-requiring enzyme (IlvB) (PDB:1BFD) VTP50486.1
Alteromonas macleodii MIT1002 1039 K09897 nan Uncharacterized conserved protein YifE, UPF0438 family (YifE) VTP50485.1
Alteromonas macleodii MIT1002 1040 4.21483E-5 5.7475E-6 nan Acyl-CoA thioesterase PaaI, contains HGG motif (PaaI) (PDB:1PSU) VTP50484.1
Alteromonas macleodii MIT1002 1041 K01021 nan Tetratricopeptide (TPR) repeat (TPR) (PDB:3AS4) VTP50483.1
Alteromonas macleodii MIT1002 1042 1.93753E-4 2.45397E-4 7.8712E-5 2.4041E-5 K02014 nan Outer membrane receptor protein, Fe transport (CirA) (PDB:1BY3) VTP50482.1
Alteromonas macleodii MIT1002 1043 4.69643E-5 1.97574E-4 9.55485E-5 3.15795E-5 K13288 nan Oligoribonuclease (3'-5' exoribonuclease) (Orn) (PDB:1YTA) VTP50481.1
Alteromonas macleodii MIT1002 1044 1.77394E-5 1.13194E-4 1.36847E-4 7.72931E-5 K06949 nan Ribosome biogenesis GTPase RsgA (RsgA) (PDB:1T9H) VTP50480.1
Alteromonas macleodii MIT1002 1045 0.001353016 1.96345E-4 2.51248E-4 2.52644E-4 K01613 Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE Phosphatidylserine decarboxylase (Psd) (PDB:6L06) VTP50479.1
Alteromonas macleodii MIT1002 1046 K03298 nan Permease of the drug/metabolite transporter (DMT) superfamily (RhaT) (PDB:5I20) VTP50478.1
Alteromonas macleodii MIT1002 1047 1.91167E-5 K01126 nan Glycerophosphoryl diester phosphodiesterase (UgpQ) (PDB:1O1Z) VTP50477.1
Alteromonas macleodii MIT1002 1048 2.47709E-5 2.47709E-5 K19058 nan VTP50476.1
Alteromonas macleodii MIT1002 1049 K09798 nan Uncharacterized conserved protein YibQ, putative polysaccharide deacetylase 2 family (YibQ) (PDB:2NLY) VTP50475.1
Alteromonas macleodii MIT1002 1050 7.95293E-5 1.47697E-5 3.78711E-5 5.9079E-5 K22719 nan Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB (EnvC) VTP50474.1
Alteromonas macleodii MIT1002 1051 7.02662E-4 0.001010337 5.9456E-4 4.64631E-4 nan Rhodanese-related sulfurtransferase (PspE) (PDB:1TQ1) VTP50473.1
Alteromonas macleodii MIT1002 1052 K03676 nan Glutaredoxin (GrxC) (PDB:1AAZ) VTP50472.1
Alteromonas macleodii MIT1002 1053 5.34211E-4 6.76436E-4 0.001077095 5.25539E-4 K03071 nan Preprotein translocase subunit SecB (SecB) (PDB:1OZB) VTP50471.1
Alteromonas macleodii MIT1002 1054 4.87113E-5 2.4783E-5 K00057 nan Glycerol-3-phosphate dehydrogenase (GpsA) (PDB:1EVY) VTP50470.1
Alteromonas macleodii MIT1002 1055 nan VTP50469.1
Alteromonas macleodii MIT1002 1056 nan Outer membrane protein TolC (TolC) (PDB:1EK9) VTP50468.1
Alteromonas macleodii MIT1002 1057 K05685 nan ABC-type antimicrobial peptide transport system, permease component (SalY)!!!ABC-type lipoprotein export system, ATPase component (LolD) (PDB:5GKO) VTP50467.1
Alteromonas macleodii MIT1002 1058 5.34895E-6 K13888 nan Multidrug efflux pump subunit AcrA (membrane-fusion protein) (AcrA) (PDB:1T5E) VTP50466.1
Alteromonas macleodii MIT1002 1059 9.51695E-5 1.42754E-5 5.13916E-5 K03216 nan tRNA(Leu) C34 or U34 (ribose-2'-O)-methylase TrmL, contains SPOUT domain (TrmL) (PDB:4JAK) VTP50465.1
Alteromonas macleodii MIT1002 1060 1.0823E-5 2.70575E-6 8.11725E-6 K01048 nan Lysophospholipase, alpha-beta hydrolase superfamily (PldB) (PDB:5O7G) VTP50464.1
Alteromonas macleodii MIT1002 1061 4.85302E-6 1.42355E-5 K07640 nan Sensor histidine kinase WalK (WalK) (PDB:4I5S) VTP50463.1
Alteromonas macleodii MIT1002 1062 K07662 nan DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain (OmpR) (PDB:1XHF) VTP50462.1
Alteromonas macleodii MIT1002 1063 K06006 nan Periplasmic chaperone Spy, Spy/CpxP family (CpxP) (PDB:3ITF) VTP50461.1
Alteromonas macleodii MIT1002 1064 nan VTP50460.1
Alteromonas macleodii MIT1002 1065 K02393 nan Flagellar basal body L-ring protein FlgH (FlgH) VTP50459.1
Alteromonas macleodii MIT1002 1066 nan VTP50458.1
Alteromonas macleodii MIT1002 1067 K01734 nan Methylglyoxal synthase (MgsA) (PDB:1S8A) (PUBMED:9665712) VTP50457.1
Alteromonas macleodii MIT1002 1068 1.44387E-4 4.04457E-4 2.67898E-4 1.27861E-4 K00145 Ornithine biosynthesis, glutamate => ornithine N-acetyl-gamma-glutamylphosphate reductase (ArgC) (PDB:3DR3) VTP50456.1
Alteromonas macleodii MIT1002 1069 4.65241E-4 2.77475E-4 8.13649E-5 K00930 Ornithine biosynthesis, glutamate => ornithine N-acetylglutamate kinase (ArgB) (PDB:3S6G) VTP50455.1
Alteromonas macleodii MIT1002 1070 9.68368E-4 0.001455938 0.001263426 6.9798E-4 K00611 Arginine biosynthesis, ornithine => arginine Ornithine carbamoyltransferase (ArgF) (PDB:1A1S) VTP50454.1
Alteromonas macleodii MIT1002 1071 0.002558821 0.008428543 0.003562565 0.001777283 K01940 Arginine biosynthesis, ornithine => arginine Argininosuccinate synthase (ArgG) (PDB:1J1Z) VTP50453.1
Alteromonas macleodii MIT1002 1072 0.001112591 0.001816085 0.00192505 0.002664866 K01755 Arginine biosynthesis, ornithine => arginine Argininosuccinate lyase (ArgH) (PDB:1AOS) VTP50452.1
Alteromonas macleodii MIT1002 1073 5.24393E-5 2.31271E-4 1.53284E-4 4.13464E-5 K14682 Ornithine biosynthesis, glutamate => ornithine N-acetylglutamate kinase (ArgB) (PDB:3S6G)!!!N-acetylglutamate synthase or related acetyltransferase, GNAT family (ArgA) (PDB:2R98) VTP50451.1
Alteromonas macleodii MIT1002 1074 nan Predicted alpha/beta hydrolase VTP50450.1
Alteromonas macleodii MIT1002 1075 nan DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA (AcrR) (PDB:2QOP) VTP50449.1
Alteromonas macleodii MIT1002 1076 nan VTP50448.1
Alteromonas macleodii MIT1002 1077 nan VTP50447.1
Alteromonas macleodii MIT1002 1078 1.79097E-6 K03781 Photorespiration Catalase (KatE) (PDB:6RJR) VTP50446.1
Alteromonas macleodii MIT1002 1079 nan VTP50445.1
Alteromonas macleodii MIT1002 1080 1.50319E-5 2.74112E-5 7.6044E-5 1.12739E-5 K06889 nan Dipeptidyl aminopeptidase/acylaminoacyl peptidase (DAP2) (PDB:2JBW) VTP56599.1
Alteromonas macleodii MIT1002 1081 K07552 nan MFS family permease, includes anhydromuropeptide permease AmpG (ProP) (PUBMED:12426329) VTP56597.1
Alteromonas macleodii MIT1002 1082 0.026782574 0.026170116 0.035709105 0.11467701 K00053 Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine Ketol-acid reductoisomerase (IlvC) (PDB:1NP3) VTP56595.1
Alteromonas macleodii MIT1002 1083 K02521 nan DNA-binding transcriptional regulator, LysR family (LysR) (PDB:2FYI) VTP56593.1
Alteromonas macleodii MIT1002 1084 K07391 nan Predicted Mg-chelatase, contains ChlI-like and ATPase domains, YifB family (YifB) VTP56591.1
Alteromonas macleodii MIT1002 1085 nan Uncharacterized membrane protein YeiH (YadS) (PDB:5WUC) VTP56589.1
Alteromonas macleodii MIT1002 1086 0.003162011 0.0046005 0.005216247 0.003386849 K01687 Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine Dihydroxyacid dehydratase/phosphogluconate dehydratase (IlvD) (PDB:2GP4) VTP56588.1
Alteromonas macleodii MIT1002 1087 0.001341446 0.002405078 0.001438965 3.61442E-4 K01754 Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine Threonine deaminase (IlvA) (PDB:3IAU) VTP56586.1
Alteromonas macleodii MIT1002 1088 8.50306E-4 3.63802E-4 4.14748E-4 4.526E-4 K00631 nan Glycerol-3-phosphate O-acyltransferase (PlsB) VTP56584.1
Alteromonas macleodii MIT1002 1089 1.15554E-6 1.03999E-5 nan GGDEF domain, diguanylate cyclase (c-di-GMP synthetase) or its enzymatically inactive variants (GGDEF) (PDB:6D9M)!!!PAS domain (PAS) (PDB:2MWG)!!!GAF domain (GAF) VTP56582.1
Alteromonas macleodii MIT1002 1090 0.002164064 1.29755E-4 3.8358E-4 5.01966E-4 nan VTP56580.1
Alteromonas macleodii MIT1002 1091 1.05693E-4 1.63472E-4 4.43911E-4 5.28466E-5 K01356 nan SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase) (LexA) (PDB:1AY9) VTP56578.1
Alteromonas macleodii MIT1002 1092 K02275 Cytochrome c oxidase, prokaryotes Heme/copper-type cytochrome/quinol oxidase, subunit 2 (CyoA) (PDB:1CYW)!!!Cytochrome c, mono- and diheme variants (CccA) (PDB:1A2S) VTP56576.1
Alteromonas macleodii MIT1002 1093 K02274 Cytochrome c oxidase, prokaryotes Heme/copper-type cytochrome/quinol oxidase, subunit 1 (CyoB) (PDB:1AR1) VTP56574.1
Alteromonas macleodii MIT1002 1094 K02258 Cytochrome c oxidase Cytochrome c oxidase assembly protein Cox11 (COX11) (PDB:1SO9) VTP56572.1
Alteromonas macleodii MIT1002 1095 K02276 Cytochrome c oxidase, prokaryotes Heme/copper-type cytochrome/quinol oxidase, subunit 3 (CyoC) (PDB:1QLE) VTP56570.1
Alteromonas macleodii MIT1002 1096 nan VTP56568.1
Alteromonas macleodii MIT1002 1097 K14998 nan Cytochrome oxidase assembly protein ShyY1 (Shy1) VTP56566.1
Alteromonas macleodii MIT1002 1098 1.96507E-5 nan Cytochrome oxidase Cu insertion factor, SCO1/SenC/PrrC family (Sco1) (PDB:1ON4) VTP56564.1
Alteromonas macleodii MIT1002 1099 K02259 Cytochrome c oxidase Heme A synthase (CtaA) (PDB:6A2J) VTP56562.1
Alteromonas macleodii MIT1002 1100 K02257 Cytochrome c oxidase Polyprenyltransferase (heme O synthase) (CyoE) VTP56560.1
Alteromonas macleodii MIT1002 1101 2.60249E-5 6.1638E-5 2.05459E-5 K07152 nan Cytochrome oxidase Cu insertion factor, SCO1/SenC/PrrC family (Sco1) (PDB:1ON4) VTP56558.1
Alteromonas macleodii MIT1002 1102 nan Ribosomal protein S18 acetylase RimI and related acetyltransferases (RimI) (PDB:1GHE) VTP56556.1
Alteromonas macleodii MIT1002 1103 6.96884E-5 2.36366E-4 1.16387E-4 1.40095E-5 K21478 nan Peptidoglycan/xylan/chitin deacetylase, PgdA/NodB/CDA1 family (CDA1) (PDB:1NY1) VTP56554.1
Alteromonas macleodii MIT1002 1104 K03327 nan Na+-driven multidrug efflux pump, DinF/NorM/MATE family (NorM) (PDB:3VVN) (PUBMED:29915058) VTP56552.1
Alteromonas macleodii MIT1002 1105 nan Trans-aconitate methyltransferase (Tam) (PDB:2P35) VTP56550.1
Alteromonas macleodii MIT1002 1106 9.92463E-5 6.23174E-5 6.23174E-5 nan Catechol 2,3-dioxygenase or related enzyme, vicinal oxygen chelate (VOC) family (GloA) (PDB:3R4Q) (PUBMED:11830595) VTP56548.1
Alteromonas macleodii MIT1002 1107 K01779 nan Amino acid racemase YgeA (RacX) (PDB:5ELL) VTP56546.1
Alteromonas macleodii MIT1002 1108 nan
Alteromonas macleodii MIT1002 1109 9.16009E-6 4.12203E-5 1.83202E-5 K07400 nan Fe-S cluster assembly iron-binding protein IscA (IscA) (PDB:1R94)!!!Fe-S cluster biogenesis protein NfuA, 4Fe-4S-binding domain (NifU) (PDB:2Z51) VTP56544.1
Alteromonas macleodii MIT1002 1110 8.67775E-5 1.95415E-4 5.33251E-5 1.81339E-4 nan Murein tripeptide amidase MpaA (MpaA) (PDB:1ARL) VTP56542.1
Alteromonas macleodii MIT1002 1111 K02242 nan DNA utilization protein ComFC/GntX, contains phosphoribosyltransferase domain (ComFC) (PUBMED:28618091) VTP56540.1
Alteromonas macleodii MIT1002 1112 6.21115E-5 3.70489E-5 3.26902E-6 K02170 Pimeloyl-ACP biosynthesis, BioC-BioH pathway, malonyl-ACP => pimeloyl-ACP 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase MenH and related esterases, alpha/beta hydrolase fold (MenH) (PDB:4MYS) VTP56538.1
Alteromonas macleodii MIT1002 1113 nan VTP56536.1
Alteromonas macleodii MIT1002 1114 nan VTP56534.1
Alteromonas macleodii MIT1002 1115 1.21309E-4 2.67375E-5 1.55474E-4 7.87272E-5 nan Cysteine protease, C1A family (PDB:1AEC) VTP56532.1
Alteromonas macleodii MIT1002 1116 7.87532E-4 0.004510787 0.002315742 4.67797E-4 K06959 nan Transcriptional accessory protein Tex/SPT6 (Tex) (PDB:2OCE) VTP56530.1
Alteromonas macleodii MIT1002 1117 2.18476E-5 K04760 nan Transcription elongation factor, GreA/GreB family (GreA) (PDB:1GRJ) VTP56528.1
Alteromonas macleodii MIT1002 1118 nan VTP56526.1
Alteromonas macleodii MIT1002 1119 nan Transposase InsO and inactivated derivatives (Tra5) VTP56524.1
Alteromonas macleodii MIT1002 1120 nan VTP54123.1
Alteromonas macleodii MIT1002 1121 K03320 nan Ammonia channel protein AmtB (AmtB) (PDB:1U77) VTP50402.1
Alteromonas macleodii MIT1002 1122 7.58978E-5 3.1406E-5 K04752 nan Nitrogen regulatory protein PII (GlnK) (PDB:2GW8) (PUBMED:24610711) VTP50401.1
Alteromonas macleodii MIT1002 1123 nan VTP50400.1
Alteromonas macleodii MIT1002 1124 nan AraC-type DNA-binding domain and AraC-containing proteins (AraC) (PDB:1BL0) VTP50399.1
Alteromonas macleodii MIT1002 1125 K01150 nan Endonuclease I (EndA) (PDB:1OUO) VTP50398.1
Alteromonas macleodii MIT1002 1126 3.90512E-4 1.47993E-4 1.53722E-4 3.49456E-4 K09781 nan Membrane protein MutK/YedI, may be involved in DNA repair (MutK) (PUBMED:9922251;10411738;31497001) VTP50397.1
Alteromonas macleodii MIT1002 1127 nan VTP50396.1
Alteromonas macleodii MIT1002 1128 nan VTP50395.1
Alteromonas macleodii MIT1002 1129 5.3945E-4 4.21527E-4 2.02902E-4 2.482E-4 K05365 nan Penicillin-binding protein 1B/1F, peptidoglycan  transglycosylase/transpeptidase (MrcB) (PDB:3FWL) VTP50394.1
Alteromonas macleodii MIT1002 1130 4.11882E-6 8.58086E-5 4.05017E-5 1.4004E-4 K08305 nan Membrane-bound lytic murein transglycosylase B (MltB) (PDB:1D0K)!!!Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases (PGRP) (PDB:4FET) VTP50393.1
Alteromonas macleodii MIT1002 1131 nan Uncharacterized protein, contains GH25 family domain VTP50392.1
Alteromonas macleodii MIT1002 1132 3.99712E-6 9.99281E-7 K03579 nan HrpA-like RNA helicase (HrpA) (PDB:5N8R) VTP50391.1
Alteromonas macleodii MIT1002 1133 K01975 nan RNA 2',3'-cyclic phosphodiesterase (2'-5' RNA ligase) (ThpR) (PDB:1IUH) (PUBMED:25239919) VTP50390.1
Alteromonas macleodii MIT1002 1134 0.001701968 0.001506897 0.001108498 5.23286E-4 K01433 nan Formyltetrahydrofolate hydrolase (PurU) (PDB:3O1L) VTP50389.1
Alteromonas macleodii MIT1002 1135 2.40923E-5 6.02306E-6 nan VTP50388.1
Alteromonas macleodii MIT1002 1136 nan VTP50387.1
Alteromonas macleodii MIT1002 1137 0.004080795 0.003886587 0.001287487 0.008632034 K01284 nan Zn-dependent oligopeptidase, M3 family (Dcp) (PDB:5L43) (PUBMED:25239919;31422053) VTP50386.1
Alteromonas macleodii MIT1002 1138 5.66888E-5 1.1476E-4 4.56275E-5 1.2513E-4 K03406 nan Methyl-accepting chemotaxis protein (MCP) (Tar) (PDB:1QU7) VTP50385.1
Alteromonas macleodii MIT1002 1139 nan VTP50384.1
Alteromonas macleodii MIT1002 1140 nan VTP50383.1
Alteromonas macleodii MIT1002 1141 2.38227E-4 9.32192E-5 5.17884E-5 9.47728E-5 nan Uncharacterized Ca-binding beta-propeller protein YjiK (YjiK) (PDB:3QQZ) VTP50382.1
Alteromonas macleodii MIT1002 1142 1.8847E-4 3.1977E-5 1.59885E-5 1.34449E-4 K11105 nan NhaP-type Na+/H+ or K+/H+ antiporter (NhaP) (PDB:4CZB) VTP50381.1
Alteromonas macleodii MIT1002 1143 3.83211E-5 5.04225E-6 8.06759E-6 8.06759E-6 K02527 KDO2-lipid A biosynthesis, Raetz pathway, LpxL-LpxM type 3-deoxy-D-manno-octulosonic-acid transferase (KdtA) (PDB:2XCI) VTP50380.1
Alteromonas macleodii MIT1002 1144 nan
Alteromonas macleodii MIT1002 1145 nan Glycosyltransferase involved in cell wall bisynthesis (RfaB) (PDB:2IV7) VTP50379.1
Alteromonas macleodii MIT1002 1146 0.008486757 0.001620795 0.003245038 0.012331834 K02961 nan Ribosomal protein S17 (RpsQ) (PDB:4V4H) VTP50378.1
Alteromonas macleodii MIT1002 1147 9.72422E-4 8.00271E-4 0.001088741 0.005869429 K02904 nan Ribosomal protein L29 (RpmC) (PDB:1VS6) VTP50377.1
Alteromonas macleodii MIT1002 1148 0.017238187 0.009690283 0.010397226 0.014386709 K02878 nan Ribosomal protein L16/L10AE (RplP) (PDB:1WKI) VTP50376.1
Alteromonas macleodii MIT1002 1149 0.020820463 0.014321662 0.016500037 0.17825603 K02982 nan Ribosomal protein S3 (RpsC) (PDB:1VS6) VTP50375.1
Alteromonas macleodii MIT1002 1150 0.015972508 0.016417522 0.018146945 0.07886326 K02890 nan Ribosomal protein L22 (RplV) (PDB:1VS6) VTP50374.1
Alteromonas macleodii MIT1002 1151 0.01742307 0.007308735 0.015158618 0.11673843 K02965 nan Ribosomal protein S19 (RpsS) (PDB:4V4H) VTP50373.1
Alteromonas macleodii MIT1002 1152 0.095846765 0.04716169 0.057970848 0.4794879 K02886 nan Ribosomal protein L2 (RplB) (PDB:1VS6) VTP50372.1
Alteromonas macleodii MIT1002 1153 0.019106254 0.01297437 0.017021827 0.033491462 K02892 nan Ribosomal protein L23 (RplW) (PDB:1VS6) VTP50371.1
Alteromonas macleodii MIT1002 1154 0.007613892 0.008392635 0.008646383 0.013496758 K02926 nan Ribosomal protein L4 (RplD) (PDB:1VS6) VTP50370.1
Alteromonas macleodii MIT1002 1155 0.008919495 0.007688934 0.007120663 0.01367997 K02906 nan Ribosomal protein L3 (RplC) (PDB:1VS6) VTP50369.1
Alteromonas macleodii MIT1002 1156 0.030843312 0.03323098 0.038498648 0.14439553 K02946 nan Ribosomal protein S10 (RpsJ) (PDB:4V4H) VTP50368.1
Alteromonas macleodii MIT1002 1157 2.33874E-5 5.80788E-5 1.58255E-4 2.39721E-5 nan Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB (PulE) (PDB:4KSR) VTP50367.1
Alteromonas macleodii MIT1002 1158 2.1448E-5 nan VTP50366.1
Alteromonas macleodii MIT1002 1159 1.51258E-4 2.10206E-4 3.3458E-4 1.18544E-4 K01681 Citrate cycle (TCA cycle, Krebs cycle) Aconitase A (AcnA) (PDB:1ACO) VTP50365.1
Alteromonas macleodii MIT1002 1160 K09705 nan Predicted sugar epimerase, cupin superfamily (CFF1) (PDB:1XE7) (PUBMED:15608122) VTP50364.1
Alteromonas macleodii MIT1002 1161 0.005032723 0.012629086 0.020340098 0.009992166 K01834 Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate Phosphoglycerate mutase (BPG-dependent) (GpmA) (PDB:1E58) VTP50363.1
Alteromonas macleodii MIT1002 1162 0.001301006 0.00202633 0.001699758 0.001407516 K00826 Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase (IlvE) (PDB:1A3G) VTP50362.1
Alteromonas macleodii MIT1002 1163 K07494 nan CRISPR-associated protein Csa3, CARF domain (Csa3) (PDB:2WTE) (PUBMED:21093452)
Alteromonas macleodii MIT1002 1164 nan ABC-type amino acid transport/signal transduction system, periplasmic component/domain (HisJ) (PDB:1GGG) VTP53887.1
Alteromonas macleodii MIT1002 1165 nan VTP53885.1
Alteromonas macleodii MIT1002 1166 1.24292E-5 K09930 nan Uncharacterized conserved protein, UPF0276 family (PDB:3BWW) VTP53883.1
Alteromonas macleodii MIT1002 1167 K09929 nan Uncharacterized conserved protein, DUF2063 family (PDB:3DEE) VTP53881.1
Alteromonas macleodii MIT1002 1168 1.30917E-4 2.32193E-4 6.01066E-4 K00759 nan Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein (Apt) (PDB:1QB7) VTP53877.1
Alteromonas macleodii MIT1002 1169 1.20226E-5 2.13831E-4 8.58757E-6 1.76045E-5 K02343 nan DNA polymerase III, gamma/tau subunits (DnaX) (PDB:1A5T) VTP53875.1
Alteromonas macleodii MIT1002 1170 4.45112E-4 0.001319051 0.001080211 8.99723E-4 K09747 nan DNA-binding nucleoid-associated protein YbaB/EfbC (YbaB) (PDB:1J8B) (PUBMED:19594923;22544270) VTP53873.1
Alteromonas macleodii MIT1002 1171 2.85291E-5 K00528 nan Flavodoxin/ferredoxin--NADP reductase (Fpr) (PDB:3OZU) VTP53871.1
Alteromonas macleodii MIT1002 1172 nan VTP53869.1
Alteromonas macleodii MIT1002 1173 9.0263E-5 5.67634E-5 1.11666E-5 2.51248E-5 nan VTP53867.1
Alteromonas macleodii MIT1002 1174 1.76757E-5 1.10473E-5 K06187 nan Recombinational DNA repair protein RecR (RecR) (PDB:2JGR) (PUBMED:26337406) VTP53865.1
Alteromonas macleodii MIT1002 1175 0.001248518 0.008827566 0.00671113 0.002254066 K04079 nan Molecular chaperone, HSP90 family (HtpG) (PDB:1Y4S) (PUBMED:30150682) VTP53863.1
Alteromonas macleodii MIT1002 1176 0.00667607 0.01003465 0.013234342 0.020876758 K00939 Adenine ribonucleotide biosynthesis, IMP => ADP,ATP Adenylate kinase or related kinase (Adk) (PDB:1AK2) VTP53861.1
Alteromonas macleodii MIT1002 1177 2.68509E-5 K07136 nan Uncharacterized membrane protein YecN, MAPEG domain (YecN) VTP53859.1
Alteromonas macleodii MIT1002 1178 nan VTP53857.1
Alteromonas macleodii MIT1002 1179 0.08343269 0.013464973 0.031081837 0.11735178 K02014 nan Outer membrane receptor for ferrienterochelin and colicins (FepA) (PDB:2HDF) (PUBMED:16468998) VTP53855.1
Alteromonas macleodii MIT1002 1180 K03100 nan Signal peptidase I (LepB) (PDB:1B12) (PUBMED:1925027)!!!Type IV secretory pathway, protease TraF (TraF) (PDB:1B12) VTP53853.1
Alteromonas macleodii MIT1002 1181 4.50348E-4 1.04207E-4 1.39248E-4 8.22694E-5 K07263 nan Predicted Zn-dependent peptidase, M16 family (PqqL) (PDB:6OFS) VTP53851.1
Alteromonas macleodii MIT1002 1182 K21990 nan Formate/nitrite transporter FocA, FNT family (FocA) (PDB:3KCU) VTP53849.1
Alteromonas macleodii MIT1002 1183 K07017 nan Predicted hydrolase of the alpha/beta superfamily (YbbA) (PDB:3GFF) VTP53847.1
Alteromonas macleodii MIT1002 1184 6.00544E-5 2.74534E-4 5.90534E-4 7.29232E-5 K11755 Histidine biosynthesis, PRPP => histidine Phosphoribosyl-AMP cyclohydrolase (HisI1) (PDB:1ZPS)!!!Phosphoribosyl-ATP pyrophosphohydrolase (HisI2) (PDB:6J22) VTP53845.1
Alteromonas macleodii MIT1002 1185 6.51385E-6 9.4342E-4 3.84316E-4 4.07115E-5 K02500 Histidine biosynthesis, PRPP => histidine Imidazole glycerol phosphate synthase subunit HisF (HisF) (PDB:1OX4) VTP53843.1
Alteromonas macleodii MIT1002 1186 1.31606E-4 4.09175E-4 6.90334E-4 7.55538E-4 K01814 Histidine biosynthesis, PRPP => histidine Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) (PDB:4U28) VTP53841.1
Alteromonas macleodii MIT1002 1187 2.73488E-5 2.73488E-5 2.31412E-4 1.683E-5 K02501 Histidine biosynthesis, PRPP => histidine Imidazoleglycerol phosphate synthase glutamine amidotransferase subunit HisH (HisH) (PDB:1OX4) VTP53839.1
Alteromonas macleodii MIT1002 1188 2.98063E-4 0.001094269 7.15515E-4 5.6566E-4 K01089 Histidine biosynthesis, PRPP => histidine Imidazoleglycerol phosphate dehydratase HisB (HisB2) (PDB:1RHY)!!!Histidinol phosphatase/D-glycero-mannoheptose bisphosphatephosphatase, HAD superfamily (HisB1/GmhB) (PDB:2GMW) (PUBMED:20050615;20050614) VTP53837.1
Alteromonas macleodii MIT1002 1189 1.12676E-4 3.17617E-4 1.26557E-4 1.04103E-4 K00817 Histidine biosynthesis, PRPP => histidine Histidinol-phosphate/aromatic aminotransferase or cobyric acid decarboxylase (HisC) (PDB:4R2N) VTP53835.1
Alteromonas macleodii MIT1002 1190 2.43818E-4 5.63282E-4 8.98954E-4 7.06128E-4 K00013 Histidine biosynthesis, PRPP => histidine Histidinol dehydrogenase (HisD) (PDB:1K75) VTP53833.1
Alteromonas macleodii MIT1002 1191 0.001702065 0.004178949 0.004234642 0.003964481 K00765 Histidine biosynthesis, PRPP => histidine ATP phosphoribosyltransferase (HisG) (PDB:1H3D) VTP53831.1
Alteromonas macleodii MIT1002 1192 nan VTP53829.1
Alteromonas macleodii MIT1002 1193 nan ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ (ParA) (PDB:6NOO) VTP53827.1
Alteromonas macleodii MIT1002 1194 3.39405E-5 3.23978E-5 5.24535E-5 2.61496E-4 nan Lipid-binding SYLF domain, Ysc84/FYVE family (SYLF) (PUBMED:21624956) VTP53823.1
Alteromonas macleodii MIT1002 1195 nan VTP53821.1
Alteromonas macleodii MIT1002 1196 nan Uncharacterized membrane protein VTP53819.1
Alteromonas macleodii MIT1002 1197 K07090 nan Sulfite exporter TauE/SafE/YfcA and related permeases, UPF0721 family (TauE) (PUBMED:21183667;22797525) VTP53817.1
Alteromonas macleodii MIT1002 1198 8.10477E-6 K16147 nan 1,4-alpha-glucan branching enzyme (GlgB) (PDB:4LPC) (PUBMED:25871919) VTP53815.1
Alteromonas macleodii MIT1002 1199 3.05336E-5 nan VTP53813.1
Alteromonas macleodii MIT1002 1200 nan Ribosomal protein S27E (RPS27A) (PDB:1QXF) VTP53811.1
Alteromonas macleodii MIT1002 1201 K01069 nan Glyoxylase or a related metal-dependent hydrolase, beta-lactamase superfamily II (GloB) (PDB:1QH3) (PUBMED:25670698)!!!Rhodanese-related sulfurtransferase (PspE) (PDB:1TQ1) VTP53809.1
Alteromonas macleodii MIT1002 1202 nan Heme-binding membrane subunit of periplasmic DMSO/TMAO and protein-methionine-sulfoxide reductases (MsrQ) (PUBMED:26641313) VTP53213.1
Alteromonas macleodii MIT1002 1203 nan VTP53807.1
Alteromonas macleodii MIT1002 1204 K21420 nan Arginyl-tRNA--protein-N-Asp/Glu arginylyltransferase (Ate1) VTP52284.1
Alteromonas macleodii MIT1002 1205 3.43503E-6 K00684 nan Leu/Phe-tRNA-protein transferase (Aat) (PDB:2CXA) VTP52286.1
Alteromonas macleodii MIT1002 1206 0.001342337 0.001327726 0.001666506 0.00127248 K00384 nan Thioredoxin reductase (TrxB) (PDB:3FBS) VTP52288.1
Alteromonas macleodii MIT1002 1207 K09899 nan Uncharacterized membrane protein YfbV, UPF0208 family (YfbV) VTP52290.1
Alteromonas macleodii MIT1002 1208 0.001311735 7.10385E-4 7.51923E-4 6.57756E-4 K04773 nan Periplasmic serine protease, ClpP class (SppA) (PDB:3BEZ) VTP52292.1
Alteromonas macleodii MIT1002 1209 K15977 nan Uncharacterized membrane protein YphA, DoxX/SURF4 family (DoxX) VTP52294.1
Alteromonas macleodii MIT1002 1210 7.38412E-4 0.001859645 0.001516868 0.001338272 nan Nitroreductase (NfnB) (PDB:1F5V) VTP52296.1
Alteromonas macleodii MIT1002 1211 3.15185E-6 3.15185E-6 3.15185E-6 nan VTP52298.1
Alteromonas macleodii MIT1002 1212 3.93746E-5 1.20749E-4 2.64248E-4 3.28122E-5 K01424 nan L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D (AnsA) (PDB:1ZQ1) VTP52300.1
Alteromonas macleodii MIT1002 1213 7.41966E-5 8.72955E-4 4.93728E-4 1.09921E-5 K03644 Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H Lipoate synthase (LipA) (PDB:4U0O) (PUBMED:27941785) VTP52302.1
Alteromonas macleodii MIT1002 1214 1.57734E-5 9.85838E-6 1.57734E-5 K03801 Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H Lipoate-protein ligase B (LipB) (PDB:2QHT) (PUBMED:19798051) VTP52304.1
Alteromonas macleodii MIT1002 1215 1.38138E-4 1.26346E-4 K09158 nan Putative lipoate-binding regulatory protein, UPF0250 family (YbeD) (PDB:1RWU) (PUBMED:15547281) VTP52306.1
Alteromonas macleodii MIT1002 1216 7.24623E-4 9.90218E-4 5.39375E-4 3.22509E-4 K07258 nan D-alanyl-D-alanine carboxypeptidase (DacC) (PDB:1HD8) VTP52308.1
Alteromonas macleodii MIT1002 1217 1.03455E-5 1.03455E-5 K03642 nan Peptidoglycan lytic transglycosylase RlpA, contains C-terminal SPOR domain (RlpA) (PDB:4AVR) (PUBMED:24806796) VTP52310.1
Alteromonas macleodii MIT1002 1218 1.65918E-5 1.54067E-5 K05837 nan Peptodoglycan polymerase FtsW/RodA/SpoVE (FtsW) (PDB:6BAR) (PUBMED:30692671) VTP52312.1
Alteromonas macleodii MIT1002 1219 1.34827E-4 3.95739E-5 3.40519E-5 5.52193E-5 K05515 nan Cell division protein FtsI, peptidoglycan transpeptidase (Penicillin-binding protein 2) (FtsI) (PDB:6HZQ) VTP52314.1
Alteromonas macleodii MIT1002 1220 K00783 nan 23S rRNA pseudoU1915 N3-methylase RlmH (RlmH) (PDB:1NS5) VTP52316.1
Alteromonas macleodii MIT1002 1221 4.74579E-5 1.95415E-4 7.53743E-5 K09710 nan Ribosomal silencing factor RsfS, regulates association of 30S and 50S subunits (RsfS) (PDB:6SJ6) VTP52318.1
Alteromonas macleodii MIT1002 1222 K00969 NAD biosynthesis, aspartate => quinolinate => NAD Nicotinate-nucleotide adenylyltransferase NadD (NadD) (PDB:1YUM) VTP52320.1
Alteromonas macleodii MIT1002 1223 7.71375E-6 1.45704E-5 1.67131E-5 2.57125E-6 K02340 nan DNA polymerase III, delta subunit (HolA) (PDB:3ZH9) VTP52322.1
Alteromonas macleodii MIT1002 1224 4.23216E-4 2.02551E-4 7.41041E-5 4.47095E-4 K03643 nan Outer membrane lipoprotein LptE/RlpB (LPS assembly) (LptE) (PDB:2JXP) VTP52324.1
Alteromonas macleodii MIT1002 1225 9.91613E-4 0.003703756 0.003831892 0.002205518 K01869 nan Leucyl-tRNA synthetase (LeuS) (PDB:6LPF) VTP52326.1
Alteromonas macleodii MIT1002 1226 4.2896E-6 nan Chalcone/flavanone-binding protein YndB, AHSA1/START/SRPBCC domain (YndB) (PDB:2KTE) (PUBMED:20818668) VTP52328.1
Alteromonas macleodii MIT1002 1227 1.37745E-5 1.65295E-5 7.71374E-6 9.91768E-6 K04770 nan Predicted ATP-dependent protease (LonB) (PDB:3K1J) VTP52330.1
Alteromonas macleodii MIT1002 1228 2.14956E-5 nan Uncharacterized membrane protein YckC, RDD family (YckC) VTP52332.1
Alteromonas macleodii MIT1002 1229 nan VTP52334.1
Alteromonas macleodii MIT1002 1230 4.09008E-5 3.02211E-4 3.02211E-4 4.72063E-4 K08683 nan NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family (FabG) (PDB:6L1H) VTP52336.1
Alteromonas macleodii MIT1002 1231 1.72247E-4 1.29941E-4 2.26641E-4 K07574 nan RNA-binding protein YhbY (YhbY) (PDB:1JO0) VTP52338.1
Alteromonas macleodii MIT1002 1232 3.78675E-5 K02427 nan 23S rRNA U2552 (ribose-2'-O)-methylase RlmE/FtsJ (RlmE) (PDB:1EIZ) (PUBMED:10769117) VTP52340.1
Alteromonas macleodii MIT1002 1233 0.002651673 0.00513869 0.00413176 0.002905441 K03798 nan ATP-dependent Zn proteases (HflB) (PDB:1LV7) VTP52342.1
Alteromonas macleodii MIT1002 1234 K00796 Tetrahydrofolate biosynthesis, GTP => THF Dihydropteroate synthase (FolP) (PDB:1AD1) VTP52344.1
Alteromonas macleodii MIT1002 1235 1.71807E-4 1.1738E-4 2.92467E-4 1.96726E-5 K03431 UDP-N-acetyl-D-glucosamine biosynthesis, prokaryotes, glucose => UDP-GlcNAc Phosphomannomutase (ManB) (PDB:6MNV) VTP52346.1
Alteromonas macleodii MIT1002 1236 0.002698625 0.002241734 0.004160677 0.004594428 K01803 Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate Triosephosphate isomerase (TpiA) (PDB:1HG3) VTP52348.1
Alteromonas macleodii MIT1002 1237 K03075 nan Protein translocase subunit SecG (SecG) (PDB:2AKH) VTP52350.1
Alteromonas macleodii MIT1002 1238 1.00138E-4 2.18691E-5 2.14854E-5 6.10033E-5 K21023 nan GGDEF domain, diguanylate cyclase (c-di-GMP synthetase) or its enzymatically inactive variants (GGDEF) (PDB:6D9M)!!!EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant) (EAL) (PDB:2BAS) VTP52352.1
Alteromonas macleodii MIT1002 1239 nan Membrane potential modulator PMP3/YqaE, plasma membrane proteolipid 3 (PMP3)/Esi3/RCI2/UPF0057 family (YqaE) (PUBMED:32307863) VTP52354.1
Alteromonas macleodii MIT1002 1240 K07497 nan Transposase InsO and inactivated derivatives (Tra5) VTP56522.1
Alteromonas macleodii MIT1002 1241 K02358 nan Translation elongation factor EF-Tu, a GTPase (TufA) (PDB:1EFU) VTP55964.1
Alteromonas macleodii MIT1002 1242 0.002846638 0.008973316 0.012920837 0.004384275 K02355 nan Translation elongation factor EF-G, a GTPase (FusA) (PDB:1DAR) VTP55966.1
Alteromonas macleodii MIT1002 1243 0.04682631 0.02900597 0.026632804 0.054932274 K02992 nan Ribosomal protein S7 (RpsG) (PDB:4V4H) VTP55968.1
Alteromonas macleodii MIT1002 1244 0.002482085 0.001144123 0.001898204 0.003155795 K02950 nan Ribosomal protein S12 (RpsL) (PDB:4V4H) VTP55970.1
Alteromonas macleodii MIT1002 1245 0.039617293 0.045804705 0.04860455 0.059527792 K03046 nan DNA-directed RNA polymerase, beta' subunit/160 kD subunit (RpoC) (PDB:1NT9) VTP55972.1
Alteromonas macleodii MIT1002 1246 0.041267797 0.042504285 0.040455487 0.05632833 K03043 nan DNA-directed RNA polymerase, beta subunit/140 kD subunit (RpoB) (PDB:5UAJ) VTP55974.1
Alteromonas macleodii MIT1002 1247 0.011473986 0.0040404 0.00230746 0.12129641 K02935 nan Ribosomal protein L7/L12 (RplL) (PDB:1CTF) VTP55976.1
Alteromonas macleodii MIT1002 1248 0.018831413 0.019565923 0.042765204 0.0870088 K02864 nan Ribosomal protein L10 (RplJ) (PDB:5IT8) VTP55978.1
Alteromonas macleodii MIT1002 1249 0.049966592 0.05240928 0.041276973 0.05936491 K02863 nan Ribosomal protein L1 (RplA) (PDB:3J65) VTP55980.1
Alteromonas macleodii MIT1002 1250 0.013140969 0.016030908 0.012243023 0.011605172 K02867 nan Ribosomal protein L11 (RplK) (PDB:2E34) VTP55982.1
Alteromonas macleodii MIT1002 1251 nan VTP55984.1
Alteromonas macleodii MIT1002 1252 nan VTP55986.1
Alteromonas macleodii MIT1002 1253 0.001431975 0.004621084 0.003775353 0.002318551 K02601 nan Transcription termination/antitermination protein NusG (NusG) (PDB:3EWG) (PUBMED:19500594) VTP55988.1
Alteromonas macleodii MIT1002 1254 K03073 nan Preprotein translocase subunit SecE (SecE) (PDB:5MG3) (PUBMED:29684280) VTP55990.1
Alteromonas macleodii MIT1002 1255 4.11232E-5 3.34724E-5 2.39089E-5 2.94079E-5 K18893 nan ABC-type multidrug transport system, ATPase and permease component (MdlB) (PDB:2HYD) VTP55992.1
Alteromonas macleodii MIT1002 1256 0.002958129 0.001033717 0.001873435 K10218 nan RNA degradosome component RraA (regulator of RNase E activity) (RraA) (PDB:1J3L) (PUBMED:20471400) VTP55994.1
Alteromonas macleodii MIT1002 1257 0.00474492 0.001916374 0.002592089 0.002949971 K07386 nan Predicted metalloendopeptidase (PepO) (PDB:1DMT) VTP55996.1
Alteromonas macleodii MIT1002 1258 K18575 nan Uncharacterized membrane protein YhhN (YhhN) VTP55998.1
Alteromonas macleodii MIT1002 1259 K09964 nan ACT domain, ACT-3 family (ACT-3) (PDB:1ZVP) VTP56000.1
Alteromonas macleodii MIT1002 1260 1.91583E-5 1.38578E-4 1.55183E-4 2.77796E-5 K05591 nan Superfamily II DNA and RNA helicase (SrmB) (PDB:3RRM) VTP56002.1
Alteromonas macleodii MIT1002 1261 2.0169E-6 8.06759E-6 2.0169E-6 K02030 nan ABC-type amino acid transport/signal transduction system, periplasmic component/domain (HisJ) (PDB:1GGG) VTP56004.1
Alteromonas macleodii MIT1002 1262 3.10811E-4 0.001045302 0.001065517 7.89662E-4 K01465 Uridine monophosphate biosynthesis, glutamine (+ PRPP) => UMP Dihydroorotase (PyrC) (PDB:2Y3D) VTP56006.1
Alteromonas macleodii MIT1002 1263 4.15257E-5 1.46561E-5 K03098 nan Bacterial lipocalin Blc (Blc) (PDB:1QWD) VTP56008.1
Alteromonas macleodii MIT1002 1264 2.78281E-6 4.45249E-5 2.04073E-5 4.03507E-5 nan Predicted oxidoreductase YdhF (YdhF) (PDB:1UR3) VTP56010.1
Alteromonas macleodii MIT1002 1265 6.92415E-6 6.92415E-6 K08234 nan Catechol 2,3-dioxygenase or related enzyme, vicinal oxygen chelate (VOC) family (GloA) (PDB:3R4Q) (PUBMED:11830595) VTP56012.1
Alteromonas macleodii MIT1002 1266 3.97655E-4 1.30396E-4 7.11253E-5 2.10143E-5 K03442 nan Small-conductance mechanosensitive channel MscK (MscK) VTP56014.1
Alteromonas macleodii MIT1002 1267 K02429 nan Fucose permease (FucP) (PDB:3O7P) VTP56016.1
Alteromonas macleodii MIT1002 1268 K05341 nan Glycosidase/amylase (phosphorylase) (AmyA) (PDB:2P67) (PUBMED:29684280) VTP56018.1
Alteromonas macleodii MIT1002 1269 nan VTP56020.1
Alteromonas macleodii MIT1002 1270 1.80781E-5 9.68469E-6 3.35735E-5 1.93693E-5 K01495 Tetrahydrofolate biosynthesis, GTP => THF GTP cyclohydrolase I (FolE) (PDB:1A8R) (PUBMED:19767425;30692671) VTP56022.1
Alteromonas macleodii MIT1002 1271 1.4968E-5 3.74199E-6 K13938 nan NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family (FabG) (PDB:6L1H) VTP56024.1
Alteromonas macleodii MIT1002 1272 4.04907E-4 8.37138E-4 0.001040833 6.21022E-5 K10536 nan Agmatine/peptidylarginine deiminase (AguA) (PDB:1VKP) VTP56026.1
Alteromonas macleodii MIT1002 1273 0.002599611 0.002133774 0.002714097 0.002324254 K12251 nan Omega-amidase YafV/Nit2, hydrolyzes alpha-ketoglutaramate (Nit2) (PUBMED:28373563) VTP56028.1
Alteromonas macleodii MIT1002 1274 nan
Alteromonas macleodii MIT1002 1275 nan VTP55237.1
Alteromonas macleodii MIT1002 1276 nan VTP55147.1
Alteromonas macleodii MIT1002 1277 3.61384E-5 3.61384E-5 nan DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains (CitB) (PDB:1A04) VTP55149.1
Alteromonas macleodii MIT1002 1278 1.05062E-6 4.20247E-6 1.05062E-6 K20975 nan Signal transduction histidine kinase (BaeS) (PDB:1JOY) VTP55151.1
Alteromonas macleodii MIT1002 1279 8.8825E-6 nan FIST domain protein MJ1623, contains FIST_N and FIST_C domains (FIST) (PUBMED:17855421) VTP55153.1
Alteromonas macleodii MIT1002 1280 1.63779E-5 K19339 nan Polyferredoxin NapH (NapH) (PUBMED:27322068)!!!Transcriptional regulator NosR of nitric oxide reductase (NosR) VTP55155.1
Alteromonas macleodii MIT1002 1281 0.022115944 0.010327778 7.01172E-4 5.71154E-4 K00138 nan Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenase (AdhE) (PDB:1A4S) VTP55157.1
Alteromonas macleodii MIT1002 1282 nan DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains (CitB) (PDB:1A04) VTP55159.1
Alteromonas macleodii MIT1002 1283 9.33936E-5 K07675 nan Signal transduction histidine kinase ComP (ComP) (PDB:4GT8) VTP55161.1
Alteromonas macleodii MIT1002 1284 4.41691E-5 1.33846E-4 6.75922E-5 2.91115E-4 K03406 nan Methyl-accepting chemotaxis protein (MCP) (Tar) (PDB:1QU7)!!!PAS domain (PAS) (PDB:2MWG) VTP55163.1
Alteromonas macleodii MIT1002 1285 nan DNA-binding transcriptional regulator, LysR family (LysR) (PDB:2FYI) VTP55165.1
Alteromonas macleodii MIT1002 1286 0.001551963 0.001167203 0.001237693 0.003427594 K00140 Malonate semialdehyde pathway, propanoyl-CoA => acetyl-CoA Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenase (AdhE) (PDB:1A4S) VTP55167.1
Alteromonas macleodii MIT1002 1287 6.04375E-6 1.10802E-4 1.56131E-4 1.70736E-4 K00020 nan 3-hydroxyisobutyrate dehydrogenase or related beta-hydroxyacid dehydrogenase (MmsB) (PDB:1I36) VTP55169.1
Alteromonas macleodii MIT1002 1288 K02168 nan Choline-glycine betaine transporter (BetT) (PDB:2WIT) VTP55171.1
Alteromonas macleodii MIT1002 1289 2.94103E-6 nan DNA-binding transcriptional regulator, LysR family (LysR) (PDB:2FYI) VTP55173.1
Alteromonas macleodii MIT1002 1290 2.56579E-5 1.47728E-5 6.99762E-6 3.38218E-5 nan FMN-dependent dehydrogenase, includes L-lactate dehydrogenase and type II isopentenyl diphosphate isomerase (LldD) (PDB:6AI7) VTP55175.1
Alteromonas macleodii MIT1002 1291 0.00265131 0.001407699 7.53889E-4 0.001031771 K03777 nan FAD/FMN-containing lactate dehydrogenase/glycolate oxidase (GlcD) (PDB:1AHU) VTP55177.1
Alteromonas macleodii MIT1002 1292 K20918 nan DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains (CitB) (PDB:1A04) VTP55179.1
Alteromonas macleodii MIT1002 1293 0.001641717 6.60395E-5 3.56845E-4 5.02248E-4 K06214 nan Curli biogenesis system outer membrane secretion channel CsgG (CsgG) (PDB:3X2R) (PUBMED:24417346) VTP55181.1
Alteromonas macleodii MIT1002 1294 4.27066E-5 1.16472E-5 2.32945E-5 K04338 nan VTP55183.1
Alteromonas macleodii MIT1002 1295 2.70575E-5 6.76436E-6 K04337 nan VTP55185.1
Alteromonas macleodii MIT1002 1296 nan VTP55187.1
Alteromonas macleodii MIT1002 1297 K04335 nan VTP55189.1
Alteromonas macleodii MIT1002 1298 0.00294274 3.76872E-5 4.76673E-4 2.69045E-4 K14645 nan Serine protease, subtilisin family (AprE) (PDB:1SCJ)!!!Uncharacterized conserved protein, PKD repeat domain (PDB:2KZW)!!!Regulatory P domain of the subtilisin-like proprotein convertases and other proteases (PDB:1OT5) VTP55191.1
Alteromonas macleodii MIT1002 1299 K20264 nan DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains (CitB) (PDB:1A04) VTP55193.1
Alteromonas macleodii MIT1002 1300 nan Signal transduction histidine kinase UhpB, glucose-6-phosphate specific (UhpB) VTP55195.1
Alteromonas macleodii MIT1002 1301 2.86656E-4 1.57338E-4 6.35817E-5 nan VTP55197.1
Alteromonas macleodii MIT1002 1302 nan
Alteromonas macleodii MIT1002 1303 nan Retron-type reverse transcriptase (YkfC) VTP53073.1
Alteromonas macleodii MIT1002 1304 3.74117E-4 9.2565E-5 1.17635E-4 3.76045E-4 nan VTP53071.1
Alteromonas macleodii MIT1002 1305 0.007634881 0.007717065 0.010804439 0.023038877 K01738 Cysteine biosynthesis, serine => cysteine Cysteine synthase (CysK) (PDB:1FCJ) VTP53069.1
Alteromonas macleodii MIT1002 1306 2.74143E-5 1.90846E-4 4.53391E-5 4.58663E-5 nan MoxR-like ATPase (MoxR) (PDB:2R44) VTP53067.1
Alteromonas macleodii MIT1002 1307 2.23758E-6 6.71273E-6 4.47515E-6 2.23758E-6 K09989 nan Uncharacterized CoxE-like protein,  contains von Willebrand factor type A (vWA) domain (CoxE2) VTP53065.1
Alteromonas macleodii MIT1002 1308 K07141 nan CTP:molybdopterin cytidylyltransferase MocA (MocA) (PDB:2WAW) VTP53063.1
Alteromonas macleodii MIT1002 1309 K03327 nan Na+-driven multidrug efflux pump, DinF/NorM/MATE family (NorM) (PDB:3VVN) (PUBMED:29915058) VTP53061.1
Alteromonas macleodii MIT1002 1310 3.48264E-5 7.32806E-5 6.23974E-5 8.70661E-6 K03750 Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor Molybdopterin Mo-transferase (molybdopterin biosynthesis) (MoeA) (PDB:2NQU) (PUBMED:18801996;32239579) VTP53059.1
Alteromonas macleodii MIT1002 1311 K01091 nan Phosphoglycolate phosphatase, HAD superfamily (Gph) (PDB:2NYV) VTP53057.1
Alteromonas macleodii MIT1002 1312 K00690 nan Glycosidase/amylase (phosphorylase) (AmyA) (PDB:2P67) (PUBMED:29684280) VTP53055.1
Alteromonas macleodii MIT1002 1313 9.79476E-5 2.19662E-4 1.80771E-4 2.86281E-4 K13693 nan Glycosyltransferase, catalytic subunit of cellulose synthase and poly-beta-1,6-N-acetylglucosamine synthase (BcsA) (PDB:4HG6) VTP53053.1
Alteromonas macleodii MIT1002 1314 K07026 Photorespiration Mannosyl-3-phosphoglycerate phosphatase YedP/MpgP, HAD superfamily (YedP) (PDB:1XVI) (PUBMED:25848029) VTP53051.1
Alteromonas macleodii MIT1002 1315 K15918 Photorespiration Pantothenate kinase-related protein Tda10 (topoisomerase I damage affected protein) (Tda10) (PDB:1ODF) VTP53049.1
Alteromonas macleodii MIT1002 1316 4.50278E-5 1.88058E-4 2.41914E-4 2.6487E-6 K15257 nan 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase (UbiG) (PDB:1BHJ) VTP53047.1
Alteromonas macleodii MIT1002 1317 1.30277E-4 8.44387E-5 9.40887E-5 3.25692E-5 K15256 nan Trans-aconitate methyltransferase (Tam) (PDB:2P35) VTP53045.1
Alteromonas macleodii MIT1002 1318 4.25097E-4 0.001960169 0.001512845 0.004867778 nan DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains (CitB) (PDB:1A04) VTP53043.1
Alteromonas macleodii MIT1002 1319 nan Spore germination protein YkwD and related proteins with CAP (CSP/antigen 5/PR1) domain (YkwD) (PDB:1CFE) (PUBMED:31199835) VTP53041.1
Alteromonas macleodii MIT1002 1320 0.012485944 0.004676376 0.006289621 0.01883991 K06445 beta-Oxidation Acyl-CoA dehydrogenase related to the alkylation response protein AidB (CaiA) (PDB:1BUC) VTP53039.1
Alteromonas macleodii MIT1002 1321 4.3447E-5 3.3599E-5 4.3447E-5 3.47576E-5 nan VTP53037.1
Alteromonas macleodii MIT1002 1322 6.10673E-5 3.55547E-4 9.40435E-4 2.03557E-4 K11175 Inosine monophosphate biosynthesis, PRPP + glutamine => IMP Folate-dependent phosphoribosylglycinamide formyltransferase PurN (PurN) (PDB:1C2T) (PUBMED:25013077) VTP53035.1
Alteromonas macleodii MIT1002 1323 9.31893E-5 8.35314E-4 0.001356327 2.56694E-4 K01933 Inosine monophosphate biosynthesis, PRPP + glutamine => IMP Phosphoribosylaminoimidazole (AIR) synthetase (PurM) (PDB:1CLI) VTP53034.1
Alteromonas macleodii MIT1002 1324 3.9872E-4 4.30884E-4 2.20297E-4 2.62172E-4 K09938 nan Uncharacterized conserved protein, DUF2066 domain VTP53032.1
Alteromonas macleodii MIT1002 1325 K10763 nan Chromosomal replication initiation ATPase DnaA (DnaA) (PDB:1L8Q) VTP53030.1
Alteromonas macleodii MIT1002 1326 3.93813E-5 5.37018E-6 2.28233E-5 1.51037E-4 nan VTP53028.1
Alteromonas macleodii MIT1002 1327 nan Uncharacterized membrane protein VTP53026.1
Alteromonas macleodii MIT1002 1328 K03809 nan Multimeric flavodoxin WrbA, includes NAD(P)H:quinone oxidoreductase (WrbA) (PDB:4DY4) VTP53024.1
Alteromonas macleodii MIT1002 1329 6.76436E-5 7.26541E-5 2.05436E-4 K00537 nan Arsenate reductase or related protein, glutaredoxin family (ArsC) (PDB:1I9D) VTP53022.1
Alteromonas macleodii MIT1002 1330 2.58637E-5 1.29319E-5 2.0691E-5 K02199 nan Thiol-disulfide isomerase or thioredoxin (TrxA) (PDB:1XFL) VTP53020.1
Alteromonas macleodii MIT1002 1331 1.80568E-6 nan Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains (BepA) (PDB:6AIT) (PUBMED:24003122) VTP53018.1
Alteromonas macleodii MIT1002 1332 3.15829E-4 9.3923E-4 7.74091E-4 2.24486E-4 K01491 Reductive acetyl-CoA pathway (Wood-Ljungdahl pathway) 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase (FolD) (PDB:1A4I) VTP54080.1
Alteromonas macleodii MIT1002 1333 K09941 nan Uncharacterized conserved protein, DUF1415 family VTP54082.1
Alteromonas macleodii MIT1002 1334 K22900 nan tRNA (Thr-GGU) A37 N6-methylase (TrmO) (PDB:1XQB) (PUBMED:22905870) VTP54084.1
Alteromonas macleodii MIT1002 1335 9.41886E-4 0.004269749 0.005547804 0.002180739 K01881 nan Prolyl-tRNA synthetase (ProS) (PDB:5XIF) VTP54086.1
Alteromonas macleodii MIT1002 1336 7.85149E-5 1.25624E-5 2.51248E-5 2.04139E-5 nan Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase (PhnP) (PDB:6B9V) VTP54088.1
Alteromonas macleodii MIT1002 1337 6.12262E-4 1.95993E-4 3.26944E-4 5.12531E-4 K01058 nan Outer membrane phospholipase A (PldA) (PDB:1FW2) VTP54090.1
Alteromonas macleodii MIT1002 1338 nan
Alteromonas macleodii MIT1002 1339 K11418 nan Acetoin utilization deacetylase AcuC or a related deacetylase (AcuC) (PDB:1C3P) VTP54092.1
Alteromonas macleodii MIT1002 1340 1.13992E-5 3.25692E-6 1.62846E-6 K03406 nan Methyl-accepting chemotaxis protein (MCP) (Tar) (PDB:1QU7) VTP54094.1
Alteromonas macleodii MIT1002 1341 0.007663058 0.00647326 0.006191863 0.003550969 K01951 Guanine ribonucleotide biosynthesis IMP => GDP,GTP GMP synthase, glutamine amidotransferase domain (GuaA1) (PDB:4WIM)!!!GMP synthase, PP-ATPase domain/subunit (GuaA2) (PDB:4WIM) VTP54096.1
Alteromonas macleodii MIT1002 1342 0.012591078 0.026051931 0.029564606 0.0343268 K00088 Guanine ribonucleotide biosynthesis IMP => GDP,GTP IMP dehydrogenase/GMP reductase (GuaB) (PDB:1B3O) VTP54098.1
Alteromonas macleodii MIT1002 1343 5.01565E-5 1.62195E-4 1.26368E-4 9.57533E-5 K03601 nan Exonuclease VII, large subunit (XseA) VTP54100.1
Alteromonas macleodii MIT1002 1344 nan VTP54102.1
Alteromonas macleodii MIT1002 1345 nan VTP54104.1
Alteromonas macleodii MIT1002 1346 nan VTP54106.1
Alteromonas macleodii MIT1002 1347 3.59547E-5 1.07864E-4 3.49187E-4 6.58154E-5 K03977 nan Double Era-like domain GTPase Der (Der) (PDB:1MKY) VTP54108.1
Alteromonas macleodii MIT1002 1348 0.001294216 0.001385861 7.87723E-4 9.07701E-4 K17713 nan Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat (PQQ) (PDB:6TJG) VTP54110.1
Alteromonas macleodii MIT1002 1349 0.003679683 0.002261027 0.002477311 0.0051332 nan Putative negative regulator of RcsB-dependent stress response, UPF0070 family (YfgM) (PUBMED:23091052) VTP54112.1
Alteromonas macleodii MIT1002 1350 1.17386E-4 0.001826695 0.001706563 1.86377E-4 K01892 nan Histidyl-tRNA synthetase (HisS) (PDB:1KMM) VTP54114.1
Alteromonas macleodii MIT1002 1351 6.89468E-4 0.00172958 0.002976926 2.1866E-4 K03526 C5 isoprenoid biosynthesis, non-mevalonate pathway 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase IspG/GcpE (IspG) (PDB:2Y0F) VTP54116.1
Alteromonas macleodii MIT1002 1352 6.83952E-4 7.8166E-4 4.62199E-4 0.001603252 K15539 nan Cytoskeletal protein RodZ, contains Xre-like HTH and DUF4115 domains (RodZ) (PDB:3FYM) VTP54118.1
Alteromonas macleodii MIT1002 1353 4.59669E-4 1.28796E-4 9.32664E-5 4.71883E-4 K02656 nan Type IV pilus assembly protein PilF/PilW (PilF) (PDB:2VQ2) (PUBMED:16403447) VTP54120.1
Alteromonas macleodii MIT1002 1354 2.66332E-4 8.5888E-5 6.72921E-4 7.20987E-5 K06941 nan Adenine C2-methylase RlmN of 23S rRNA A2503 and tRNA A37 (RlmN) (PDB:3RFA) VTP54121.1
Alteromonas macleodii MIT1002 1355 nan DNA replication protein DnaC (DnaC) (PDB:2QGZ) VTP55311.1
Alteromonas macleodii MIT1002 1356 6.13512E-5 K09707 nan ACT domain, ACT-7 family (ACT-7) (PDB:1ZHV) (PUBMED:16987805) VTP51726.1
Alteromonas macleodii MIT1002 1357 nan Phosphotransferase system IIA component (NagE) (PDB:1AX3) VTP51724.1
Alteromonas macleodii MIT1002 1358 7.64667E-6 1.91167E-4 3.56845E-5 K00537 nan Arsenate reductase or related protein, glutaredoxin family (ArsC) (PDB:1I9D) VTP51722.1
Alteromonas macleodii MIT1002 1359 5.83918E-4 6.06407E-4 6.45955E-4 2.90796E-4 K01439 Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase or related deacylase (ArgE) (PDB:1CG2) VTP51720.1
Alteromonas macleodii MIT1002 1360 3.89101E-6 K07260 Vancomycin resistance, D-Ala-D-Lac type LD-carboxypeptidase LdcB, LAS superfamily (LdcB) (PDB:4D0Y) (PUBMED:24909784) VTP51718.1
Alteromonas macleodii MIT1002 1361 nan VTP51716.1
Alteromonas macleodii MIT1002 1362 2.09873E-6 K11102 nan Na+/H+-dicarboxylate symporter (GltP) (PDB:1XFH) VTP51714.1
Alteromonas macleodii MIT1002 1363 7.25706E-4 6.19016E-5 5.63305E-4 1.22893E-4 nan Dipeptidyl aminopeptidase/acylaminoacyl peptidase (DAP2) (PDB:2JBW) VTP51712.1
Alteromonas macleodii MIT1002 1364 0.001047641 2.9855E-4 2.00843E-4 6.92095E-4 nan Uncharacterized pentameric protein YbjQ, UPF0145 family (YbjQ) (PDB:1VR4) (PUBMED:23935051) VTP51710.1
Alteromonas macleodii MIT1002 1365 nan Purine nucleoside phosphoramidase/Ap4A hydrolase, histidine triade (HIT) family (HinT) (PDB:1AV5) (PUBMED:20934431) VTP51708.1
Alteromonas macleodii MIT1002 1366 5.98209E-5 2.76031E-4 2.81158E-4 1.14087E-4 K05526 Arginine succinyltransferase pathway, arginine => glutamate Succinylglutamate desuccinylase (AstE) (PDB:1YW4) VTP51706.1
Alteromonas macleodii MIT1002 1367 K21023 nan GGDEF domain, diguanylate cyclase (c-di-GMP synthetase) or its enzymatically inactive variants (GGDEF) (PDB:6D9M)!!!EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant) (EAL) (PDB:2BAS) VTP51704.1
Alteromonas macleodii MIT1002 1368 6.5162E-4 0.001094324 0.001241418 0.001271086 K00688 Glycogen degradation, glycogen => glucose-6P Glucan phosphorylase (GlgP) (PDB:1A8I) VTP51700.1
Alteromonas macleodii MIT1002 1369 3.53879E-4 0.001331309 0.001578065 9.99281E-4 K01835 Glycogen degradation, glycogen => glucose-6P Phosphoglucomutase/phosphomannomutase (Pgm) (PDB:1C47) (PUBMED:30938049) VTP51698.1
Alteromonas macleodii MIT1002 1370 9.2092E-5 0.002373056 8.65891E-4 2.45953E-4 K03645 nan Negative regulator of replication initiation SeqA (SeqA) (PDB:3FMT) VTP51696.1
Alteromonas macleodii MIT1002 1371 2.79164E-6 K03924 nan MoxR-like ATPase (MoxR) (PDB:2R44) VTP51694.1
Alteromonas macleodii MIT1002 1372 nan Uncharacterized conserved protein, DUF58 family, contains vWF domain (YeaD2) VTP51692.1
Alteromonas macleodii MIT1002 1373 K22452 nan Transglutaminase-like enzyme, putative cysteine protease (YebA) (PDB:3ISR) VTP51690.1
Alteromonas macleodii MIT1002 1374 K21993 nan Formate/nitrite transporter FocA, FNT family (FocA) (PDB:3KCU) VTP51688.1
Alteromonas macleodii MIT1002 1375 K20074 nan Serine/threonine protein kinase (SPS1) (PDB:6G4J)!!!Serine/threonine protein phosphatase PrpC (PTC1) (PDB:6IHL) VTP51686.1
Alteromonas macleodii MIT1002 1376 nan Cyanate lyase (CynS) (PDB:1DW9) VTP51684.1
Alteromonas macleodii MIT1002 1377 K00874 Semi-phosphorylative Entner-Doudoroff pathway, gluconate => glycerate-3P Sugar or nucleoside kinase, ribokinase family (RbsK) (PDB:2QCV) VTP53461.1
Alteromonas macleodii MIT1002 1378 K01625 Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate 2-keto-3-deoxy-6-phosphogluconate aldolase (Eda) (PDB:2V81) VTP53459.1
Alteromonas macleodii MIT1002 1379 1.71417E-6 1.71417E-6 2.48554E-5 nan Mannitol-1-phosphate/altronate dehydrogenases (MtlD) (PDB:1LJ8) VTP53457.1
Alteromonas macleodii MIT1002 1380 6.16117E-5 1.65543E-4 4.79202E-5 1.86702E-5 K01812 D-Galacturonate degradation (bacteria), D-galacturonate => pyruvate + D-glyceraldehyde 3P Glucuronate isomerase (UxaC) (PDB:1J5S) VTP53455.1
Alteromonas macleodii MIT1002 1381 K01685 D-Galacturonate degradation (bacteria), D-galacturonate => pyruvate + D-glyceraldehyde 3P Altronate dehydratase (UxaA) (PDB:6U7L) VTP53453.1
Alteromonas macleodii MIT1002 1382 5.20335E-6 1.21412E-5 2.60168E-6 K02529 nan DNA-binding transcriptional regulator, LacI/PurR family (PurR) (PDB:1BDH) VTP53451.1
Alteromonas macleodii MIT1002 1383 K11690 nan TRAP-type C4-dicarboxylate transport system, large permease component (DctQ) VTP53449.1
Alteromonas macleodii MIT1002 1384 K21394 nan TRAP-type C4-dicarboxylate transport system, small permease component YiaM (DctM) VTP53447.1
Alteromonas macleodii MIT1002 1385 1.07568E-5 K21395 nan TRAP-type C4-dicarboxylate transport system, periplasmic component (DctP) (PDB:2CEX) VTP53445.1
Alteromonas macleodii MIT1002 1386 K01815 nan 5-keto 4-deoxyuronate isomerase (KduI) (PDB:1X8M) VTP53443.1
Alteromonas macleodii MIT1002 1387 K00065 nan NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family (FabG) (PDB:6L1H) VTP53441.1
Alteromonas macleodii MIT1002 1388 2.15004E-6 nan Rhamnogalacturonyl hydrolase YesR (YesR) (PDB:1NC5) VTP53439.1
Alteromonas macleodii MIT1002 1389 K07093 nan Secreted phosphatase, PhoX family (PhoX) (PDB:3ZWU) VTP53437.1
Alteromonas macleodii MIT1002 1390 nan VTP53435.1
Alteromonas macleodii MIT1002 1391 4.46379E-6 K09967 nan Uncharacterized conserved protein YcgI, DUF1989 family (YcgI) (PDB:3DI4) VTP53433.1
Alteromonas macleodii MIT1002 1392 K09190 nan Uncharacterized conserved protein YcgG, contains conserved FPC and CPF motifs (YcgG) (PUBMED:23055930) VTP53431.1
Alteromonas macleodii MIT1002 1393 nan Glycosyltransferase, GT2 family (WcaE) (PDB:2Z86) VTP53429.1
Alteromonas macleodii MIT1002 1394 nan VTP53427.1
Alteromonas macleodii MIT1002 1395 6.60331E-5 4.34852E-5 4.34852E-5 4.34852E-5 nan VTP53425.1
Alteromonas macleodii MIT1002 1396 K18353 Vancomycin resistance, D-Ala-D-Lac type Uncharacterized conserved protein YafD, endonuclease/exonuclease/phosphatase (EEP) superfamily (YafD) VTP53423.1
Alteromonas macleodii MIT1002 1397 nan VTP55833.1
Alteromonas macleodii MIT1002 1398 nan VTP55835.1
Alteromonas macleodii MIT1002 1399 2.09373E-5 4.48657E-6 3.29015E-5 1.12164E-4 K03591 nan Cell division protein FtsN (FtsN) (PDB:1UTA) VTP55837.1
Alteromonas macleodii MIT1002 1400 1.20627E-6 K04066 nan Primosomal protein N' (replication factor Y) - superfamily II helicase (PriA) (PDB:6DCR) VTP55839.1
Alteromonas macleodii MIT1002 1401 0.004024153 0.00691769 0.005083581 0.007468342 K02909 nan Ribosomal protein L31 (RpmE) (PDB:1VS6) VTP55841.1
Alteromonas macleodii MIT1002 1402 nan VTP55843.1
Alteromonas macleodii MIT1002 1403 0.003846252 5.31329E-4 0.001116861 0.002264745 K00029 CAM (Crassulacean acid metabolism), light Malic enzyme (SfcA) (PDB:1DO8) VTP55845.1
Alteromonas macleodii MIT1002 1404 1.99856E-5 7.99425E-6 K03764 nan Transcriptional regulator MetJ (met regulon) (MetJ) (PDB:1CMA) VTP55847.1
Alteromonas macleodii MIT1002 1405 1.60969E-4 0.002231705 0.002222763 5.06755E-4 K00297 Reductive acetyl-CoA pathway (Wood-Ljungdahl pathway) 5,10-methylenetetrahydrofolate reductase (MetF) (PDB:1B5T) VTP55849.1
Alteromonas macleodii MIT1002 1406 2.99105E-6 K07058 nan Uncharacterized membrane protein, BrkB/YihY/UPF0761 family (not an RNase) (BrkB) VTP55851.1
Alteromonas macleodii MIT1002 1407 2.68235E-4 1.02316E-4 2.3436E-4 1.03699E-4 nan VTP55853.1
Alteromonas macleodii MIT1002 1408 nan VTP55855.1
Alteromonas macleodii MIT1002 1409 2.70575E-6 K01259 nan 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase MenH and related esterases, alpha/beta hydrolase fold (MenH) (PDB:4MYS) VTP55857.1
Alteromonas macleodii MIT1002 1410 2.42584E-5 K07560 nan D-aminoacyl-tRNA deacylase (Dtd) (PDB:1J7G) (PUBMED:10918062;16902403;24302572) VTP55859.1
Alteromonas macleodii MIT1002 1411 2.89266E-6 2.89266E-6 1.88023E-5 nan N-acetylglutamate synthase or related acetyltransferase, GNAT family (ArgA) (PDB:2R98) VTP55861.1
Alteromonas macleodii MIT1002 1412 3.09636E-6 K03089 nan DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) (RpoD) (PDB:1SIG) VTP55863.1
Alteromonas macleodii MIT1002 1413 9.77075E-5 2.08347E-5 1.93978E-5 K07181 nan c-di-GMP phosphodiesterase YuxH/PdeH, contains EAL and HDOD domains (YuxH) (PUBMED:23893111) VTP55865.1
Alteromonas macleodii MIT1002 1414 8.55832E-6 3.93683E-4 8.91491E-5 1.81864E-5 K07181 nan c-di-GMP phosphodiesterase YuxH/PdeH, contains EAL and HDOD domains (YuxH) (PUBMED:23893111) VTP55867.1
Alteromonas macleodii MIT1002 1415 1.97813E-5 K09811 nan Cell division protein FtsX (FtsX) VTP55869.1
Alteromonas macleodii MIT1002 1416 1.36048E-4 1.08839E-4 9.27603E-5 9.64708E-5 K09812 nan Cell division ATPase FtsE (FtsE) VTP55871.1
Alteromonas macleodii MIT1002 1417 3.01819E-5 2.25085E-4 2.14343E-4 4.45056E-5 K03110 nan Signal recognition particle GTPase FtsY (FtsY) (PDB:4AK9) VTP55873.1
Alteromonas macleodii MIT1002 1418 6.09015E-4 7.24789E-5 6.83097E-5 0.001179546 K02014 nan Outer membrane cobalamin receptor protein BtuB (BtuB) (PDB:1NQE) VTP50187.1
Alteromonas macleodii MIT1002 1419 K03307 nan Uncharacterized membrane permease YidK, sodium:solute symporter family (YidK) (PDB:2XQ2) VTP50186.1
Alteromonas macleodii MIT1002 1420 2.43924E-5 2.23252E-5 2.35656E-5 1.24029E-5 K07407 nan Alpha-galactosidase (GalA) (PDB:2XN0) VTP50185.1
Alteromonas macleodii MIT1002 1421 7.53353E-6 nan Predicted dienelactone hydrolase VTP50184.1
Alteromonas macleodii MIT1002 1422 nan VTP50183.1
Alteromonas macleodii MIT1002 1423 6.11611E-4 0.001192219 9.70968E-4 3.06511E-4 K03111 nan Single-stranded DNA-binding protein (Ssb) (PDB:1EQQ) VTP50182.1
Alteromonas macleodii MIT1002 1424 8.45545E-6 6.08793E-5 4.17136E-5 3.46674E-5 K03307 nan Uncharacterized membrane permease YidK, sodium:solute symporter family (YidK) (PDB:2XQ2) VTP50181.1
Alteromonas macleodii MIT1002 1425 K00849 Galactose degradation, Leloir pathway, galactose => alpha-D-glucose-1P Galactokinase (GalK) (PDB:1PIE) VTP50180.1
Alteromonas macleodii MIT1002 1426 2.50532E-6 K00965 Galactose degradation, Leloir pathway, galactose => alpha-D-glucose-1P Galactose-1-phosphate uridylyltransferase (GalT) (PDB:1GUP) VTP50179.1
Alteromonas macleodii MIT1002 1427 1.8158E-5 4.15041E-5 5.31771E-5 K01785 Galactose degradation, Leloir pathway, galactose => alpha-D-glucose-1P Galactose mutarotase or related enzyme (GalM) (PDB:1LUR) VTP50178.1
Alteromonas macleodii MIT1002 1428 1.0563E-5 1.93655E-5 2.1126E-5 K02529 nan DNA-binding transcriptional regulator, LacI/PurR family (PurR) (PDB:1BDH) VTP50177.1
Alteromonas macleodii MIT1002 1429 nan VTP54123.1
Alteromonas macleodii MIT1002 1430 K07486 nan Transposase VTP51152.1
Alteromonas macleodii MIT1002 1431 nan VTP50674.1
Alteromonas macleodii MIT1002 1432 nan Two-component response regulator, AmiR/NasT family, consists of REC and RNA-binding antiterminator (ANTAR) domains (AmiR) (PDB:1QO0) (PUBMED:16936038) VTP50673.1
Alteromonas macleodii MIT1002 1433 K09962 nan Uncharacterized conserved protein (PDB:2LA3) VTP50672.1
Alteromonas macleodii MIT1002 1434 K19302 nan Membrane-associated phospholipid phosphatase (PgpB) (PDB:1D2T) VTP50671.1
Alteromonas macleodii MIT1002 1435 K05527 nan DNA-binding global transcriptional regulator BolA, affects cell shape, cell division and biofilm formation (BolA) (PDB:2DHM) (PUBMED:19111750;2569159) VTP50670.1
Alteromonas macleodii MIT1002 1436 nan Alkylated DNA repair dioxygenase AlkB (AlkB) (PDB:3KHC) VTP50669.1
Alteromonas macleodii MIT1002 1437 8.57919E-6 2.32353E-4 1.67294E-4 2.681E-5 K11391 nan 16S rRNA G1207 methylase RsmC (RsmC) (PDB:1DUS) VTP50668.1
Alteromonas macleodii MIT1002 1438 3.45362E-4 7.38611E-4 7.92301E-4 0.001192805 nan Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family (PpiB) (PDB:4DGD) VTP50667.1
Alteromonas macleodii MIT1002 1439 K03790 nan Protein N-acetyltransferase, RimJ/RimL family (RimL) (PDB:1S7F) VTP50666.1
Alteromonas macleodii MIT1002 1440 nan Gamma-glutamylcyclotransferase ChaC2 (glutathione degradation) (ChaC2) (PDB:5HWI) (PUBMED:27913623) VTP50665.1
Alteromonas macleodii MIT1002 1441 2.88726E-4 4.70462E-4 6.92502E-5 1.75873E-5 K02014 nan Outer membrane receptor for ferrienterochelin and colicins (FepA) (PDB:2HDF) (PUBMED:16468998) VTP50664.1
Alteromonas macleodii MIT1002 1442 nan VTP50663.1
Alteromonas macleodii MIT1002 1443 K02406 nan Flagellin and related hook-associated protein FlgL (FlgL) (PDB:1IO1) VTP51027.1
Alteromonas macleodii MIT1002 1444 3.8419E-5 1.70751E-5 3.8419E-5 K00640 Cysteine biosynthesis, serine => cysteine VTP51026.1
Alteromonas macleodii MIT1002 1445 K02397 nan Flagellin and related hook-associated protein FlgL (FlgL) (PDB:1IO1) VTP51025.1
Alteromonas macleodii MIT1002 1446 3.87956E-6 K02396 nan Flagellar hook-associated protein FlgK (FlgK) (PDB:2D4Y) VTP51024.1
Alteromonas macleodii MIT1002 1447 K02395 nan Flagellum-specific peptidoglycan hydrolase FlgJ (FlgJ) (PDB:2ZYC)!!!Rod binding protein domain (FlgJ1) VTP51023.1
Alteromonas macleodii MIT1002 1448 K02394 nan Flagellar basal body P-ring protein FlgI (FlgI) VTP51022.1
Alteromonas macleodii MIT1002 1449 K02393 nan Flagellar basal body L-ring protein FlgH (FlgH) VTP51021.1
Alteromonas macleodii MIT1002 1450 K02392 nan Flagellar basal body rod protein FlgG (FlgG) (PDB:6JZR) VTP51020.1
Alteromonas macleodii MIT1002 1451 nan Transposase VTP54239.1
Alteromonas macleodii MIT1002 1452 2.66313E-5 2.03756E-5 1.96607E-5 5.925E-5 nan Type IV pilus assembly protein FimV (FimV)!!!Midasin, AAA ATPase with  vWA domain, involved in ribosome maturation (MDN1) (PDB:6HYP) VTP53639.1
Alteromonas macleodii MIT1002 1453 2.67488E-5 3.00924E-5 5.68413E-5 1.33744E-5 K06173 nan tRNA U38,U39,U40 pseudouridine synthase TruA (TruA) (PDB:1DJ0) VTP53638.1
Alteromonas macleodii MIT1002 1454 9.82638E-4 0.00230847 0.001181878 6.41532E-4 K01963 3-Hydroxypropionate bi-cycle Acetyl-CoA carboxylase beta subunit (AccD) (PDB:2F9I) VTP53637.1
Alteromonas macleodii MIT1002 1455 7.94011E-6 1.3829E-4 1.44907E-4 9.92517E-6 K11754 Tetrahydrofolate biosynthesis, GTP => THF Folylpolyglutamate synthase/Dihydropteroate synthase (FolC) (PDB:1W78) VTP53636.1
Alteromonas macleodii MIT1002 1456 7.11461E-5 1.62213E-4 4.12648E-5 1.53676E-4 K03749 nan Cell division protein DedD (periplasmic protein involved in septation) (DedD) VTP53635.1
Alteromonas macleodii MIT1002 1457 K03558 nan Colicin V production accessory protein CvpA, regulator of purF expression and biofilm formation (CvpA) (PUBMED:27795353) VTP53634.1
Alteromonas macleodii MIT1002 1458 3.01217E-4 0.001430345 0.001346513 1.91657E-4 K00764 Inosine monophosphate biosynthesis, PRPP + glutamine => IMP Glutamine phosphoribosylpyrophosphate amidotransferase (PurF) (PDB:1ECB) VTP53633.1
Alteromonas macleodii MIT1002 1459 nan Transposase InsO and inactivated derivatives (Tra5) VTP56524.1
Alteromonas macleodii MIT1002 1460 9.63845E-6 1.7009E-6 2.89154E-5 K21090 nan Redox-sensing c-di-GMP phosphodiesterase, contains CSS-motif and EAL domains (YjcC) (PUBMED:29514851) VTP52016.1
Alteromonas macleodii MIT1002 1461 3.75097E-4 3.11753E-4 2.64556E-4 1.65813E-4 K09810 nan ABC-type lipoprotein export system, ATPase component (LolD) (PDB:5GKO) VTP52018.1
Alteromonas macleodii MIT1002 1462 2.44269E-5 8.62125E-6 1.86794E-5 1.40095E-5 K09808 nan ABC-type transport system involved in lipoprotein release, permease component LolC (LolE) (PDB:6F49) VTP52020.1
Alteromonas macleodii MIT1002 1463 K07497 nan Transposase InsO and inactivated derivatives (Tra5) VTP52022.1
Alteromonas macleodii MIT1002 1464 nan
Alteromonas macleodii MIT1002 1465 K06153 nan Undecaprenyl pyrophosphate phosphatase (UppP) (PDB:5OON) VTP53473.1
Alteromonas macleodii MIT1002 1466 K03892 nan DNA-binding transcriptional regulator, ArsR family (ArsR) (PDB:3F6V) VTP53471.1
Alteromonas macleodii MIT1002 1467 nan
Alteromonas macleodii MIT1002 1468 nan VTP53467.1
Alteromonas macleodii MIT1002 1469 K07497 nan Transposase InsO and inactivated derivatives (Tra5) VTP53465.1
Alteromonas macleodii MIT1002 1470 K07483 nan Transposase InsO and inactivated derivatives (Tra5) VTP53463.1
Alteromonas macleodii MIT1002 1471 nan Exonuclease III (XthA) (PDB:1AKO) VTP53775.1
Alteromonas macleodii MIT1002 1472 K07448 nan Restriction endonuclease Mrr (Mrr) VTP53777.1
Alteromonas macleodii MIT1002 1473 nan Site-specific recombinase XerC (XerC) VTP53779.1
Alteromonas macleodii MIT1002 1474 nan DNA replication protein DnaC (DnaC) (PDB:2QGZ) VTP50312.1
Alteromonas macleodii MIT1002 1475 K07156 nan Copper-binding protein CopC (methionine-rich) (CopC) (PDB:1IX2) VTP50311.1
Alteromonas macleodii MIT1002 1476 nan Uncharacterized metal-binding protein, DUF411 family VTP50310.1
Alteromonas macleodii MIT1002 1477 K07495 nan VTP55415.1
Alteromonas macleodii MIT1002 1478 K07495 nan VTP56030.1
Alteromonas macleodii MIT1002 1479 nan Transposase InsO and inactivated derivatives (Tra5) VTP56524.1
Alteromonas macleodii MIT1002 1480 K07495 nan IS4 transposase InsG (InsG) VTP55341.1
Alteromonas macleodii MIT1002 1481 nan Transposase VTP50313.1
Alteromonas macleodii MIT1002 1482 K07486 nan Transposase VTP50885.1
Alteromonas macleodii MIT1002 1483 nan VTP50309.1
Alteromonas macleodii MIT1002 1484 nan
Alteromonas macleodii MIT1002 1485 nan VTP53773.1
Alteromonas macleodii MIT1002 1491 nan VTP51154.1
Alteromonas macleodii MIT1002 1492 nan Multidrug resistance efflux pump EmrA (EmrA) (PDB:4TKO) VTP51155.1
Alteromonas macleodii MIT1002 1493 K06075 nan DNA-binding transcriptional regulator, MarR family (MarR) (PDB:1JGS) VTP51156.1
Alteromonas macleodii MIT1002 1494 K02477 nan DNA-binding response regulator, LytR/AlgR family (LytT) (PDB:3BS1) VTP51157.1
Alteromonas macleodii MIT1002 1495 K02478 nan Sensor histidine kinase, LytS/YehU family (LytS) VTP51158.1
Alteromonas macleodii MIT1002 1496 K06200 nan Carbon starvation protein CstA (peptide/pyruvate transporter) (CstA) (PUBMED:26497384;29358499) VTP51159.1
Alteromonas macleodii MIT1002 1497 5.65186E-5 4.33312E-4 5.5189E-4 4.32203E-5 K02837 nan Peptide chain release factor RF-3 (PrfC) (PDB:3UOQ) VTP51160.1
Alteromonas macleodii MIT1002 1498 0.001690034 0.002610622 0.003182618 0.001473246 K01887 nan Arginyl-tRNA synthetase (ArgS) (PDB:1BS2) VTP51161.1
Alteromonas macleodii MIT1002 1499 2.33874E-5 7.79581E-5 9.51087E-5 3.04036E-5 K19784 nan NAD(P)H-dependent FMN reductase (SsuE) (PDB:6DQI) VTP51162.1
Alteromonas macleodii MIT1002 1500 1.52855E-5 nan Type IV pilus assembly protein PilF/PilW (PilF) (PDB:2VQ2) (PUBMED:16403447) VTP51163.1
Alteromonas macleodii MIT1002 1501 4.95139E-5 3.96111E-6 K21919 nan Uncharacterized conserved protein YjbI, contains pentapeptide repeats (YjbI) (PDB:2BM4) VTP51164.1
Alteromonas macleodii MIT1002 1502 0.005510797 0.002175102 K00114 nan Glucose dehydrogenase, PQQ-dependent (Gcd) (PDB:1FLG) VTP51165.1
Alteromonas macleodii MIT1002 1503 nan DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains (CitB) (PDB:1A04) VTP51166.1
Alteromonas macleodii MIT1002 1504 6.68356E-6 2.29151E-6 2.29151E-6 2.86439E-6 K21023 nan PAS domain (PAS) (PDB:2MWG)!!!Periplasmic ligand-binding sensor domain (PDB:4A2L)!!!Cyclic di-GMP metabolism protein, combines GGDEF and EAL domains with a 6TM membrane domain VTP51167.1
Alteromonas macleodii MIT1002 1505 2.10375E-6 8.415E-6 8.415E-6 nan VTP51168.1
Alteromonas macleodii MIT1002 1506 nan Cysteine synthase (CysK) (PDB:1FCJ) VTP51169.1
Alteromonas macleodii MIT1002 1507 8.70661E-6 3.37381E-4 1.21893E-4 nan Metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family (ElsH) (PUBMED:15178340) VTP51170.1
Alteromonas macleodii MIT1002 1508 3.66022E-6 9.15054E-7 nan GGDEF domain, diguanylate cyclase (c-di-GMP synthetase) or its enzymatically inactive variants (GGDEF) (PDB:6D9M)!!!Periplasmic ligand-binding sensor domain (PDB:4A2L) VTP51171.1
Alteromonas macleodii MIT1002 1509 K21741 nan Reactive chlorine resistance protein RclC/YkgB, DUF417 family (YkgB) (PUBMED:24078635) VTP51172.1
Alteromonas macleodii MIT1002 1510 nan VTP51173.1
Alteromonas macleodii MIT1002 1511 2.51248E-6 3.1406E-5 6.78369E-5 nan VTP51174.1
Alteromonas macleodii MIT1002 1512 nan VTP51175.1
Alteromonas macleodii MIT1002 1513 nan DNA-binding transcriptional regulator, LysR family (LysR) (PDB:2FYI) VTP51176.1
Alteromonas macleodii MIT1002 1514 K19267 nan Uncharacterized conserved protein YbjT, contains NAD(P)-binding and DUF2867 domains (YbjT) (PDB:5L3Z) VTP51177.1
Alteromonas macleodii MIT1002 1515 nan Uncharacterized membrane protein VTP51178.1
Alteromonas macleodii MIT1002 1516 1.48851E-5 K22769 nan Fatty acid desaturase (DesA) VTP51179.1
Alteromonas macleodii MIT1002 1517 K22770 nan Flavodoxin/ferredoxin--NADP reductase (Fpr) (PDB:3OZU) VTP51180.1
Alteromonas macleodii MIT1002 1518 2.43592E-6 6.0898E-6 K10680 nan 2,4-dienoyl-CoA reductase or related NADH-dependent reductase, Old Yellow Enzyme (OYE) family (FadH) (PDB:1BWK) VTP51181.1
Alteromonas macleodii MIT1002 1519 nan VTP51182.1
Alteromonas macleodii MIT1002 1520 3.76872E-5 1.19343E-4 5.12966E-5 3.1406E-6 K02836 nan Protein chain release factor PrfB (PrfB) (PDB:1GQE) VTP51183.1
Alteromonas macleodii MIT1002 1521 0.001942357 0.008601628 0.009510757 0.003896507 K04567 nan Lysyl-tRNA synthetase (class II) (LysU) (PDB:1BBU) VTP51184.1
Alteromonas macleodii MIT1002 1522 K00077 Pantothenate biosynthesis, valine/L-aspartate => pantothenate Ketopantoate reductase (PanE) (PDB:1BG6) VTP51185.1
Alteromonas macleodii MIT1002 1523 K06177 nan Pseudouridine synthase RluA, 23S rRNA- or tRNA-specific (RluA) (PDB:2I82) VTP51187.1
Alteromonas macleodii MIT1002 1524 2.33874E-5 5.3947E-4 3.02477E-4 2.71294E-4 K20976 nan HPt (histidine-containing phosphotransfer) domain (HPtr) (PDB:3IQT) VTP51188.1
Alteromonas macleodii MIT1002 1525 0.001735554 0.001059633 5.16701E-4 9.96494E-4 K07263 nan Predicted Zn-dependent peptidase, M16 family (PqqL) (PDB:6OFS) VTP51189.1
Alteromonas macleodii MIT1002 1526 2.51248E-4 1.88436E-4 8.20965E-5 1.85957E-4 K01919 Glutathione biosynthesis, glutamate => glutathione Gamma-glutamylcysteine synthetase (GshA) (PDB:1V4G) VTP51190.1
Alteromonas macleodii MIT1002 1527 4.14796E-6 nan Predicted transglycosylase, contains SLT domain (SLT) VTP51191.1
Alteromonas macleodii MIT1002 1528 nan VTP51192.1
Alteromonas macleodii MIT1002 1529 nan VTP51193.1
Alteromonas macleodii MIT1002 1530 nan VTP51194.1
Alteromonas macleodii MIT1002 1531 nan DNA-nicking endonuclease, Smr domain (SmrA) (PDB:3QD7) (PUBMED:12730195) VTP51195.1
Alteromonas macleodii MIT1002 1532 6.59762E-5 5.56084E-5 4.52408E-5 7.06887E-5 K07320 nan Methylase of polypeptide chain release factors (HemK) (PDB:1NV8) VTP51196.1
Alteromonas macleodii MIT1002 1533 1.48569E-4 6.69765E-4 7.55694E-4 9.63688E-5 K01736 Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate Chorismate synthase (AroC) (PDB:1Q1L) VTP51197.1
Alteromonas macleodii MIT1002 1534 2.17128E-6 K05820 nan Predicted arabinose efflux permease AraJ, MFS family (AraJ) (PDB:4LDS) VTP51198.1
Alteromonas macleodii MIT1002 1535 1.10988E-5 6.83004E-6 K06415 nan Stage V sporulation protein SpoVR/YcgB, involved in spore cortex formation (function unknown) (SpoVR) VTP51199.1
Alteromonas macleodii MIT1002 1536 2.0546E-6 2.0546E-6 5.1365E-6 K09786 nan Uncharacterized conserved protein YeaH/YhbH, required for sporulation, DUF444 family (YeaH) VTP51200.1
Alteromonas macleodii MIT1002 1537 1.41523E-4 0.001539809 5.53727E-4 0.001940791 K07180 nan Predicted Ser/Thr protein kinase (PrkA) VTP51201.1
Alteromonas macleodii MIT1002 1538 0.002396618 0.001672165 0.003168153 0.004403672 K04564 nan Superoxide dismutase (SodA) (PDB:1AP5) VTP51202.1
Alteromonas macleodii MIT1002 1539 3.0323E-5 1.94573E-4 3.86618E-4 6.82268E-5 K07390 nan Glutaredoxin-related protein (GrxD) (PDB:1YKA) VTP51203.1
Alteromonas macleodii MIT1002 1540 0.018078718 0.014368441 0.038231738 0.16809689 K02014 nan Outer membrane receptor for ferrienterochelin and colicins (FepA) (PDB:2HDF) (PUBMED:16468998) VTP51204.1
Alteromonas macleodii MIT1002 1541 1.04687E-5 K03088 nan DNA-directed RNA polymerase specialized sigma subunit, sigma24 family (RpoE) (PDB:2Q1Z) VTP51205.1
Alteromonas macleodii MIT1002 1542 5.01065E-6 2.50532E-6 2.50532E-6 K07165 nan Periplasmic ferric-dicitrate binding protein FecR, regulates iron transport (FecR) (PDB:5CAM) VTP51206.1
Alteromonas macleodii MIT1002 1543 4.17044E-6 8.93666E-7 3.57466E-6 K02014 nan Outer membrane receptor for ferrienterochelin and colicins (FepA) (PDB:2HDF) (PUBMED:16468998) VTP51207.1
Alteromonas macleodii MIT1002 1544 K02192 nan Bacterioferritin-associated ferredoxin (Bfd) (PDB:6E6R) VTP51208.1
Alteromonas macleodii MIT1002 1545 0.002406229 0.006674734 0.004265588 0.007912118 K03386 nan Alkyl hydroperoxide reductase subunit AhpC (peroxiredoxin) (AhpC) (PDB:2RII) VTP51209.1
Alteromonas macleodii MIT1002 1546 1.25029E-5 4.16762E-6 K03683 nan DNA polymerase III, epsilon subunit or related 3'-5' exonuclease (DnaQ) (PDB:1J53) VTP51210.1
Alteromonas macleodii MIT1002 1547 K21218 nan Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins (OmpA) (PDB:1OAP) VTP51211.1
Alteromonas macleodii MIT1002 1548 8.83786E-6 K01126 nan Glycerophosphoryl diester phosphodiesterase (UgpQ) (PDB:1O1Z) VTP51212.1
Alteromonas macleodii MIT1002 1549 K01759 nan Catechol 2,3-dioxygenase or related enzyme, vicinal oxygen chelate (VOC) family (GloA) (PDB:3R4Q) (PUBMED:11830595) VTP51213.1
Alteromonas macleodii MIT1002 1550 nan NADP-dependent 3-hydroxy acid dehydrogenase YdfG (YdfG) (PDB:3P19) VTP51214.1
Alteromonas macleodii MIT1002 1551 2.55435E-4 3.60122E-4 5.10871E-4 4.64809E-4 K03704 nan Cold shock protein, CspA family (CspC) (PDB:1C9O) VTP51215.1
Alteromonas macleodii MIT1002 1552 5.83761E-5 2.14874E-4 1.07437E-4 2.70145E-5 K01302 nan Zn-dependent amino- or carboxypeptidase, M28 family (Iap) (PDB:1AMP) VTP51217.1
Alteromonas macleodii MIT1002 1553 K10773 nan Endonuclease III (Nth) (PDB:4UOB) VTP51218.1
Alteromonas macleodii MIT1002 1554 K03613 nan Na+-translocating ferredoxin:NAD+ oxidoreductase  RNF, RnfE subunit (RnfE) VTP51219.1
Alteromonas macleodii MIT1002 1555 1.19642E-5 K03612 nan Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfG subunit (RnfG) VTP51220.1
Alteromonas macleodii MIT1002 1556 K03614 nan Na+-translocating ferredoxin:NAD+ oxidoreductase  RNF, RnfD subunit (RnfD) VTP51221.1
Alteromonas macleodii MIT1002 1557 3.80481E-5 2.17331E-4 3.71349E-5 2.28289E-6 K03615 nan Na+-translocating ferredoxin:NAD+ oxidoreductase  RNF, RnfC subunit (RnfC) VTP51222.1
Alteromonas macleodii MIT1002 1558 1.82252E-5 K03616 nan Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfB subunit (RnfB) (PUBMED:24045950) VTP51223.1
Alteromonas macleodii MIT1002 1559 K03617 nan Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfA subunit (RnfA) VTP51224.1
Alteromonas macleodii MIT1002 1560 1.7205E-5 K03327 nan Na+-driven multidrug efflux pump, DinF/NorM/MATE family (NorM) (PDB:3VVN) (PUBMED:29915058) VTP51225.1
Alteromonas macleodii MIT1002 1561 1.31053E-6 1.31053E-6 8.51846E-6 K03702 nan Excinuclease UvrABC helicase subunit UvrB (UvrB) (PDB:1C4O) VTP51226.1
Alteromonas macleodii MIT1002 1562 1.18962E-4 6.28119E-5 1.85581E-5 K21699 nan DNA-binding transcriptional regulator, LysR family (LysR) (PDB:2FYI) VTP51227.1
Alteromonas macleodii MIT1002 1563 4.0338E-6 6.45407E-5 3.89934E-5 2.0169E-5 K06920 nan 7-cyano-7-deazaguanine synthase (queuosine biosynthesis) (QueC) (PDB:2PG3) (PUBMED:14660578;17384645) VTP51228.1
Alteromonas macleodii MIT1002 1564 1.96287E-5 7.72064E-5 8.83294E-5 K10026 nan Organic radical activating enzyme NrdG/QueE (QueE) (PUBMED:14660578;17384645) VTP51229.1
Alteromonas macleodii MIT1002 1565 2.9509E-6 1.91809E-5 1.18036E-5 7.37725E-6 nan ABC-type amino acid transport/signal transduction system, periplasmic component/domain (HisJ) (PDB:1GGG) VTP51230.1
Alteromonas macleodii MIT1002 1566 0.002614905 0.011832974 0.011619986 0.00388519 K01953 nan Asparagine synthetase B (glutamine-hydrolyzing) (AsnB) (PDB:2ETD) (PUBMED:25951518) VTP51231.1
Alteromonas macleodii MIT1002 1567 0.004128009 0.002329663 0.001579164 0.004706596 K19701 nan Zn-dependent amino- or carboxypeptidase, M28 family (Iap) (PDB:1AMP) VTP51232.1
Alteromonas macleodii MIT1002 1568 nan VTP51233.1
Alteromonas macleodii MIT1002 1569 nan VTP51234.1
Alteromonas macleodii MIT1002 1570 2.9108E-5 2.4512E-5 1.532E-5 nan Di- and tricarboxylate antiporter (CitT) (PDB:4F35) VTP51235.1
Alteromonas macleodii MIT1002 1571 0.002943049 0.005390093 0.004195199 0.002160145 K00956 Assimilatory sulfate reduction, sulfate => H2S Sulfate adenylyltransferase subunit 1, EFTu-like GTPase family (CysN) (PDB:1ZUN) VTP51236.1
Alteromonas macleodii MIT1002 1572 8.69338E-5 3.78941E-5 5.68413E-5 2.84206E-5 K01082 nan 3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase (CysQ) VTP51237.1
Alteromonas macleodii MIT1002 1573 1.7765E-5 2.64994E-4 6.06971E-5 7.106E-5 K00860 Assimilatory sulfate reduction, sulfate => H2S Adenylylsulfate kinase or related kinase (CysC) (PDB:2GKS) VTP51238.1
Alteromonas macleodii MIT1002 1574 0.002349801 0.001697025 0.002133816 8.3887E-4 K00957 Assimilatory sulfate reduction, sulfate => H2S 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme (CysD) (PDB:1ZUN) VTP51239.1
Alteromonas macleodii MIT1002 1575 1.69672E-5 1.1409E-5 4.56359E-5 K11928 nan Na+/proline symporter (PutP) (PDB:5NVA) VTP51240.1
Alteromonas macleodii MIT1002 1576 5.37018E-6 nan GGDEF domain, diguanylate cyclase (c-di-GMP synthetase) or its enzymatically inactive variants (GGDEF) (PDB:6D9M) VTP51241.1
Alteromonas macleodii MIT1002 1577 2.01678E-4 3.38218E-5 2.44269E-4 nan VTP51242.1
Alteromonas macleodii MIT1002 1578 1.90133E-5 1.90133E-5 1.90133E-5 K03088 nan DNA-directed RNA polymerase specialized sigma subunit, sigma24 family (RpoE) (PDB:2Q1Z) VTP51243.1
Alteromonas macleodii MIT1002 1579 0.001551601 0.001722629 4.65575E-4 0.00481728 nan Uncharacterized conserved protein, DUF885 family (PDB:3IUK) VTP51244.1
Alteromonas macleodii MIT1002 1580 1.18507E-4 1.36404E-4 6.23974E-5 2.32176E-4 nan VTP51245.1
Alteromonas macleodii MIT1002 1581 nan Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction (CpoB) (PDB:2WZ7) (PUBMED:25951518)!!!Cobalamin biosynthesis cobaltochelatase CobT subunit (CobT2) VTP51246.1
Alteromonas macleodii MIT1002 1582 4.66703E-5 9.82533E-6 2.37445E-5 8.8428E-5 K07114 nan vWFA (von Willebrand factor type A) domain of Mg and Co chelatases (ChlD) VTP51247.1
Alteromonas macleodii MIT1002 1583 1.62846E-5 nan vWFA (von Willebrand factor type A) domain of Mg and Co chelatases (ChlD) VTP51248.1
Alteromonas macleodii MIT1002 1584 9.9517E-6 1.08564E-5 nan Uncharacterized conserved protein, DUF58 family, contains vWF domain (YeaD2) VTP51249.1
Alteromonas macleodii MIT1002 1585 9.03335E-5 7.68755E-4 6.44316E-4 4.32771E-4 K03924 nan MoxR-like ATPase (MoxR) (PDB:2R44) VTP51250.1
Alteromonas macleodii MIT1002 1586 0.003058962 8.63232E-4 0.001918742 0.004768955 K00626 Ethylmalonyl pathway Acetyl-CoA acetyltransferase (PaaJ) (PDB:1AFW) VTP51251.1
Alteromonas macleodii MIT1002 1587 0.011621347 0.00340658 0.00667088 0.018326065 K01782 beta-Oxidation Enoyl-CoA hydratase/carnithine racemase (CaiD) (PDB:1DCI)!!!3-hydroxyacyl-CoA dehydrogenase (FadB) (PDB:5ZQZ) VTP51252.1
Alteromonas macleodii MIT1002 1588 nan VTP51254.1
Alteromonas macleodii MIT1002 1589 6.76734E-5 1.50042E-4 2.6876E-5 1.88519E-5 K21023 nan PAS domain (PAS) (PDB:2MWG)!!!Periplasmic ligand-binding sensor domain (PDB:4A2L)!!!Cyclic di-GMP metabolism protein, combines GGDEF and EAL domains with a 6TM membrane domain VTP51255.1
Alteromonas macleodii MIT1002 1590 9.61057E-7 8.64952E-6 nan Secreted/periplasmic Zn-dependent peptidases, insulinase-like (Ptr) (PDB:1Q2L) VTP51256.1
Alteromonas macleodii MIT1002 1591 1.17249E-4 3.26622E-5 1.10549E-4 5.02496E-6 K08296 nan Phosphohistidine phosphatase SixA (SixA) (PDB:1UJB) VTP51258.1
Alteromonas macleodii MIT1002 1592 nan VTP51260.1
Alteromonas macleodii MIT1002 1593 2.35314E-4 3.13526E-4 1.53022E-4 9.89544E-5 K03699 nan Mg2+ and Co2+ transporter CorB, contains DUF21, CBS pair, and CorC-HlyC domains (CorB) (PUBMED:1779764) VTP51262.1
Alteromonas macleodii MIT1002 1594 nan ABC-type uncharacterized transport system, permease component (YpjD) VTP51264.1
Alteromonas macleodii MIT1002 1595 6.23574E-4 5.15259E-4 0.001159027 3.09339E-4 K03106 nan Signal recognition particle GTPase (Ffh) (PDB:2V3C) VTP51266.1
Alteromonas macleodii MIT1002 1596 5.1126E-6 nan VTP51268.1
Alteromonas macleodii MIT1002 1597 0.003373272 0.004455698 0.004304408 0.002859717 nan Chromosome segregation ATPase Smc (Smc) (PDB:5XG3) VTP51270.1
Alteromonas macleodii MIT1002 1598 3.07015E-4 2.25051E-4 4.01481E-4 3.41745E-4 nan VTP51272.1
Alteromonas macleodii MIT1002 1599 7.02046E-5 3.61879E-5 3.9083E-5 5.75391E-5 nan VTP51274.1
Alteromonas macleodii MIT1002 1600 nan VTP51276.1
Alteromonas macleodii MIT1002 1601 2.5245E-5 8.415E-6 K03928 nan Esterase/lipase (YvaK) (PDB:4DIU) VTP51278.1
Alteromonas macleodii MIT1002 1602 2.54153E-5 4.15116E-5 1.90614E-5 7.83636E-5 K03296 nan Multidrug efflux pump subunit AcrB (AcrB) (PDB:1IWG) VTP51280.1
Alteromonas macleodii MIT1002 1603 2.4982E-6 4.74658E-5 6.24551E-6 3.6224E-5 K03585 Multidrug resistance, efflux pump MexAB-OprM Multidrug efflux pump subunit AcrA (membrane-fusion protein) (AcrA) (PDB:1T5E) VTP51282.1
Alteromonas macleodii MIT1002 1604 3.65186E-6 5.84297E-6 K06147 nan ABC-type multidrug transport system, ATPase and permease component (MdlB) (PDB:2HYD) VTP51284.1
Alteromonas macleodii MIT1002 1605 K07396 nan Predicted protein-disulfide isomerase, contains CxxC motif (PDB:5HFG) (PUBMED:24314029) VTP51286.1
Alteromonas macleodii MIT1002 1606 nan VTP51288.1
Alteromonas macleodii MIT1002 1607 0.010661888 0.002186058 0.003609291 0.002754645 K02959 nan Ribosomal protein S16 (RpsP) (PDB:4V4H) VTP51290.1
Alteromonas macleodii MIT1002 1608 5.08305E-5 6.09966E-5 1.10133E-4 2.03322E-5 K02860 nan Ribosomal 30S subunit maturation factor RimM, required for 16S rRNA processing (RimM) (PDB:2QGG) VTP51292.1
Alteromonas macleodii MIT1002 1609 K00554 nan tRNA G37 N-methylase TrmD (TrmD) (PDB:1P9P) VTP51294.1
Alteromonas macleodii MIT1002 1610 0.007354931 0.011580779 0.008573832 0.022423867 K02884 nan Ribosomal protein L19 (RplS) (PDB:1VS6) (PUBMED:27941785) VTP51296.1
Alteromonas macleodii MIT1002 1611 nan Uncharacterized membrane protein YeiH (YadS) (PDB:5WUC) VTP51298.1
Alteromonas macleodii MIT1002 1612 3.76871E-4 2.95586E-5 1.15771E-4 3.32534E-5 K07517 nan Enoyl-CoA hydratase/carnithine racemase (CaiD) (PDB:1DCI) VTP51300.1
Alteromonas macleodii MIT1002 1613 0.001276135 0.002880212 0.002896406 0.002114611 K01626 Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase (AroG1) (PDB:6U8J) VTP51302.1
Alteromonas macleodii MIT1002 1614 2.06102E-5 1.14501E-5 1.38165E-4 1.48851E-5 K14187 Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine Prephenate dehydrogenase (TyrA) (PDB:2F1K)!!!Chorismate mutase (PheA) (PDB:1ECM) VTP51304.1
Alteromonas macleodii MIT1002 1615 1.60971E-4 6.84655E-4 6.88873E-4 1.90846E-4 K14170 Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine Prephenate dehydratase (PheA2) (PDB:1PHZ)!!!Chorismate mutase (PheA) (PDB:1ECM) VTP51306.1
Alteromonas macleodii MIT1002 1616 2.81001E-5 1.21216E-4 7.71374E-5 1.65294E-5 K03413 nan Two-component response regulator, PleD family, consists of two REC domains and a diguanylate cyclase (GGDEF) domain (PleD) (PDB:1W25) VTP51308.1
Alteromonas macleodii MIT1002 1617 3.1977E-5 K03113 nan Translation initiation factor 1 (eIF-1/SUI1) (SUI1) (PDB:1D1R) VTP51310.1
Alteromonas macleodii MIT1002 1618 K20978 nan Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) (SpoIIAA) (PDB:1AUZ) VTP51312.1
Alteromonas macleodii MIT1002 1619 1.57593E-6 1.57593E-6 K20977 nan DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain (OmpR) (PDB:1XHF) VTP51314.1
Alteromonas macleodii MIT1002 1620 nan Tellurite resistance protein TerB (TerB2) (PDB:2JXU) (PUBMED:23044854) VTP51316.1
Alteromonas macleodii MIT1002 1621 5.94741E-6 1.27445E-6 3.88706E-5 K21023 nan Cyclic di-GMP metabolism protein, combines GGDEF and EAL domains with a 6TM membrane domain VTP51318.1
Alteromonas macleodii MIT1002 1622 nan VTP51320.1
Alteromonas macleodii MIT1002 1623 9.64466E-5 4.09741E-5 3.15185E-5 3.02578E-5 K07711 nan K+-sensing histidine kinase KdpD (KdpD) (PDB:2KSF) VTP51322.1
Alteromonas macleodii MIT1002 1624 2.94634E-5 7.55472E-5 7.55472E-5 1.38252E-4 nan VTP51324.1
Alteromonas macleodii MIT1002 1625 3.35185E-5 4.24567E-4 6.32251E-4 K07715 nan DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains (AtoC) (PDB:1ZY2) VTP51326.1
Alteromonas macleodii MIT1002 1626 1.36548E-5 6.82739E-5 nan GAF domain (GAF) VTP51328.1
Alteromonas macleodii MIT1002 1627 nan Sugar isomerase-related protein YecE, UPF0759/DUF72 family (YecE) (PDB:1VPQ) VTP51330.1
Alteromonas macleodii MIT1002 1628 8.73365E-4 0.003292375 0.00292122 0.001138226 K01876 nan Aspartyl-tRNA synthetase (AspS) (PDB:1C0A) VTP51332.1
Alteromonas macleodii MIT1002 1629 K08310 Tetrahydrofolate biosynthesis, GTP => THF 8-oxo-dGTP pyrophosphatase MutT and related house-cleaning NTP pyrophosphohydrolases, NUDIX family (MutT) (PDB:4V14) VTP51334.1
Alteromonas macleodii MIT1002 1630 5.1126E-6 K01159 nan Holliday junction resolvasome RuvABC endonuclease subunit RuvC (RuvC) (PDB:1HJR) VTP51336.1
Alteromonas macleodii MIT1002 1631 K03550 nan Holliday junction resolvasome RuvABC DNA-binding subunit (RuvA) (PDB:1BDX) VTP51338.1
Alteromonas macleodii MIT1002 1632 4.21254E-5 2.54507E-5 1.35153E-4 6.58207E-6 K03551 nan Holliday junction resolvasome RuvABC, ATP-dependent DNA helicase subunit RuvB (RuvB) (PDB:1HQC) VTP51340.1
Alteromonas macleodii MIT1002 1633 2.66475E-5 K07107 nan Acyl-CoA thioesterase FadM (FadM) (PDB:2FUJ) VTP51342.1
Alteromonas macleodii MIT1002 1634 0.001569293 6.51525E-4 6.72005E-4 0.001637774 K03562 nan Biopolymer transport protein ExbB/TolQ (TolQ) (PDB:5SV0) VTP51344.1
Alteromonas macleodii MIT1002 1635 1.20201E-4 2.08771E-4 1.62377E-4 9.90079E-4 K03560 nan Biopolymer transport protein ExbD (ExbD) (PDB:2JWK) VTP51346.1
Alteromonas macleodii MIT1002 1636 2.14167E-4 1.08564E-4 7.40207E-6 3.70104E-5 K03646 nan Membrane protein TolA involved in colicin uptake (TolA) (PDB:1S62) VTP51348.1
Alteromonas macleodii MIT1002 1637 0.0037183 0.003560365 0.003791094 0.00404392 K03641 nan Periplasmic component TolB of the Tol biopolymer transport system (TolB) (PDB:1C5K) VTP51350.1
Alteromonas macleodii MIT1002 1638 0.009556104 0.011790383 0.002770631 0.014556337 K03640 nan Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins (OmpA) (PDB:1OAP) VTP51352.1
Alteromonas macleodii MIT1002 1639 2.93123E-4 5.09633E-4 3.87499E-4 4.06375E-4 K05807 nan Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction (CpoB) (PDB:2WZ7) (PUBMED:25951518) VTP51354.1
Alteromonas macleodii MIT1002 1640 9.68722E-5 6.48043E-4 4.49287E-4 2.50532E-5 K03517 NAD biosynthesis, aspartate => quinolinate => NAD Quinolinate synthase (NadA) (PDB:4HHE) (PUBMED:24498065) VTP51356.1
Alteromonas macleodii MIT1002 1641 7.1245E-4 0.002053893 9.13972E-4 0.00156332 nan VTP51358.1
Alteromonas macleodii MIT1002 1642 nan Predicted phospholipase, patatin/cPLA2 family (YjjU) VTP51360.1
Alteromonas macleodii MIT1002 1643 K00077 Pantothenate biosynthesis, valine/L-aspartate => pantothenate Ketopantoate reductase (PanE) (PDB:1BG6) VTP51362.1
Alteromonas macleodii MIT1002 1644 2.76838E-4 3.70104E-5 1.43601E-4 9.43768E-5 K07221 nan Phosphate-selective porin (OprP) (PDB:2O4V) VTP51364.1
Alteromonas macleodii MIT1002 1645 nan Signal transduction histidine kinase (BaeS) (PDB:1JOY)!!!CheY-like REC (receiver) domain, includes chemotaxis protein CheY  and sporulation regulator Spo0F (CheY) (PDB:6QRJ)!!!HPt (histidine-containing phosphotransfer) domain (HPtr) (PDB:3IQT)!!!Signal transduction histidine kinase (PDB:2QHK) VTP51366.1
Alteromonas macleodii MIT1002 1646 1.3794E-4 2.43858E-4 3.54703E-4 K06996 nan Lactoylglutathione lyase-related enzyme, vicinal oxygen chelate (VOC) family (VOC) (PDB:3OXH) (PUBMED:31710815) VTP51368.1
Alteromonas macleodii MIT1002 1647 0.004641367 0.004705634 0.005669647 0.003049571 K00133 Threonine biosynthesis, aspartate => homoserine => threonine Aspartate-semialdehyde dehydrogenase (Asd) (PDB:1BRM) VTP51370.1
Alteromonas macleodii MIT1002 1648 K12262 nan Cytochrome b561 (CybB) (PDB:5OC0) VTP51372.1
Alteromonas macleodii MIT1002 1649 1.65295E-6 6.61178E-6 6.61178E-6 nan GGDEF domain, diguanylate cyclase (c-di-GMP synthetase) or its enzymatically inactive variants (GGDEF) (PDB:6D9M) VTP51374.1
Alteromonas macleodii MIT1002 1650 1.19642E-5 nan ABC-type phosphate transport system, periplasmic component (PstS) (PDB:2Q9T) VTP51376.1
Alteromonas macleodii MIT1002 1651 1.20364E-4 1.91167E-5 1.55766E-5 9.02734E-5 nan VTP51378.1
Alteromonas macleodii MIT1002 1652 K07043 nan UTP pyrophosphatase, metal-dependent hydrolase family (YgjP) (PDB:4JIU) (PUBMED:27941785) VTP51380.1
Alteromonas macleodii MIT1002 1653 2.53055E-5 nan Predicted transcriptional regulator, contains C-terminal CBS domains VTP51382.1
Alteromonas macleodii MIT1002 1654 3.50127E-5 1.4468E-5 1.90978E-5 5.55573E-5 nan Multidrug efflux pump subunit AcrB (AcrB) (PDB:1IWG) VTP51384.1
Alteromonas macleodii MIT1002 1655 1.82999E-4 2.42919E-6 4.04865E-5 1.42108E-4 K03585 Multidrug resistance, efflux pump MexAB-OprM Multidrug efflux pump subunit AcrA (membrane-fusion protein) (AcrA) (PDB:1T5E) VTP51386.1
Alteromonas macleodii MIT1002 1656 1.72425E-5 4.31062E-6 K19736 nan DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA (AcrR) (PDB:2QOP) VTP51388.1
Alteromonas macleodii MIT1002 1657 0.006231707 3.25692E-4 0.001719398 0.010056258 K16090 nan Outer membrane receptor for monomeric catechols (Fiu) VTP51390.1
Alteromonas macleodii MIT1002 1658 2.15796E-5 1.38469E-4 2.51762E-5 K00657 GABA biosynthesis, eukaryotes, putrescine => GABA Ribosomal protein S18 acetylase RimI and related acetyltransferases (RimI) (PDB:1GHE) VTP51392.1
Alteromonas macleodii MIT1002 1659 1.57494E-4 5.00993E-5 9.6877E-5 4.15188E-5 nan Multidrug efflux pump subunit AcrB (AcrB) (PDB:1IWG) VTP51394.1
Alteromonas macleodii MIT1002 1660 3.47457E-4 2.43077E-5 1.09385E-4 2.23059E-4 K03585 Multidrug resistance, efflux pump MexAB-OprM Multidrug efflux pump subunit AcrA (membrane-fusion protein) (AcrA) (PDB:1T5E) VTP51396.1
Alteromonas macleodii MIT1002 1661 nan GGDEF domain, diguanylate cyclase (c-di-GMP synthetase) or its enzymatically inactive variants (GGDEF) (PDB:6D9M) VTP51398.1
Alteromonas macleodii MIT1002 1662 4.92388E-4 2.67131E-4 2.12261E-4 6.2812E-4 K09857 nan Intermembrane transporter PqiABC lipoprotein subunit PqiC (PqiC) (PDB:6OSX) (PUBMED:27795327) VTP51400.1
Alteromonas macleodii MIT1002 1663 4.66331E-4 1.13518E-4 1.60951E-4 6.08363E-4 K06192 nan Intermembrane transporter PqiABC subunit PqiB (PqiB) (PDB:5UVN) (PUBMED:27795327;28819315) VTP51402.1
Alteromonas macleodii MIT1002 1664 K03808 nan Intermembrane transporter PqiABC subunit PqiA (PqiA) (PUBMED:27795327) VTP51404.1
Alteromonas macleodii MIT1002 1665 nan VTP51406.1
Alteromonas macleodii MIT1002 1666 6.02004E-4 0.002647558 0.003187786 0.001230169 K01893 nan Aspartyl/asparaginyl-tRNA synthetase (AsnS) (PDB:3KFU) VTP51408.1
Alteromonas macleodii MIT1002 1667 nan VTP51410.1
Alteromonas macleodii MIT1002 1668 K07301 nan Ca2+/Na+ antiporter (ECM27) (PDB:3V5S) VTP51412.1
Alteromonas macleodii MIT1002 1669 1.7765E-6 5.09263E-5 8.8825E-6 1.7765E-6 nan Glutathione synthase, LysX or RimK-type ligase, ATP-grasp superfamily (LysX) (PDB:1GLV) VTP51414.1
Alteromonas macleodii MIT1002 1670 8.29592E-6 K03789 nan Ribosomal protein S18 acetylase RimI and related acetyltransferases (RimI) (PDB:1GHE) VTP51416.1
Alteromonas macleodii MIT1002 1671 nan VTP51418.1
Alteromonas macleodii MIT1002 1672 nan VTP51420.1
Alteromonas macleodii MIT1002 1673 7.97612E-6 K00833 Biotin biosynthesis, pimeloyl-ACP/CoA => biotin Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (BioA) (PDB:1MLY) VTP51422.1
Alteromonas macleodii MIT1002 1674 K01012 Biotin biosynthesis, pimeloyl-ACP/CoA => biotin Biotin synthase or related enzyme (BioB) (PDB:1R30) VTP51424.1
Alteromonas macleodii MIT1002 1675 1.94121E-6 7.76483E-6 K00652 Biotin biosynthesis, pimeloyl-ACP/CoA => biotin 7-keto-8-aminopelargonate synthetase or related enzyme (BioF) (PDB:1BS0) VTP51426.1
Alteromonas macleodii MIT1002 1676 K02169 Pimeloyl-ACP biosynthesis, BioC-BioH pathway, malonyl-ACP => pimeloyl-ACP Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG (UbiE) (PDB:4OBW) VTP51428.1
Alteromonas macleodii MIT1002 1677 K01935 Biotin biosynthesis, pimeloyl-ACP/CoA => biotin Dethiobiotin synthetase (BioD) (PDB:1DTS) VTP51430.1
Alteromonas macleodii MIT1002 1678 9.40434E-5 1.14806E-4 2.99229E-4 7.51127E-5 K05995 nan Peptidase E (PepE) (PDB:1FY2) VTP51432.1
Alteromonas macleodii MIT1002 1679 3.61765E-5 5.00905E-5 K01104 nan Protein-tyrosine-phosphatase (Wzb) (PDB:4D74) (PUBMED:26641313) VTP51434.1
Alteromonas macleodii MIT1002 1680 K02015 nan ABC-type Fe3+-siderophore transport system, permease component (FepD) (PDB:2NQ2) VTP51436.1
Alteromonas macleodii MIT1002 1681 1.10961E-5 K06074 nan ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component (FepC) (PDB:2NQ2) VTP51438.1
Alteromonas macleodii MIT1002 1682 0.001411185 0.003415827 0.004985705 0.001657421 K01626 Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase, class II (AroG2) (PDB:6BMC) VTP51440.1
Alteromonas macleodii MIT1002 1683 nan K+-sensing histidine kinase KdpD (KdpD) (PDB:2KSF) VTP51442.1
Alteromonas macleodii MIT1002 1684 nan DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain (OmpR) (PDB:1XHF) VTP51444.1
Alteromonas macleodii MIT1002 1685 K03499 nan Trk/Ktr K+ transport system regulatory component TrkA/KtrA/KtrC, RCK domain (TrkA) (PDB:4XTT) (PUBMED:23815639;25957408;31868587;32095817) VTP51446.1
Alteromonas macleodii MIT1002 1686 K03498 nan Trk-type K+ transport system, membrane component (TrkG) (PDB:3PJZ) VTP51448.1
Alteromonas macleodii MIT1002 1687 nan VTP51450.1
Alteromonas macleodii MIT1002 1688 K09954 nan Uncharacterized conserved protein, DUF3820 family VTP51452.1
Alteromonas macleodii MIT1002 1689 2.75709E-5 9.1903E-6 8.22291E-6 1.81388E-5 K06147 nan ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components (ATM1) (PDB:4MRN) VTP51454.1
Alteromonas macleodii MIT1002 1690 2.73095E-6 K03639 Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor GTP 3',8-cyclase (molybdenum cofactor biosynthesis protein MoaA) (MoaA) (PDB:1TV7) VTP51456.1
Alteromonas macleodii MIT1002 1691 6.28119E-5 2.00998E-5 2.00998E-5 nan Protein N-acetyltransferase, RimJ/RimL family (RimL) (PDB:1S7F) VTP51458.1
Alteromonas macleodii MIT1002 1692 nan CheY-like REC (receiver) domain, includes chemotaxis protein CheY  and sporulation regulator Spo0F (CheY) (PDB:6QRJ) VTP51460.1
Alteromonas macleodii MIT1002 1693 nan VTP55584.1
Alteromonas macleodii MIT1002 1694 nan
Alteromonas macleodii MIT1002 1695 1.49132E-5 1.54275E-6 1.54275E-6 2.4684E-5 K20974 nan Signal transduction histidine kinase (BaeS) (PDB:1JOY)!!!CheY-like REC (receiver) domain, includes chemotaxis protein CheY  and sporulation regulator Spo0F (CheY) (PDB:6QRJ) VTP50748.1
Alteromonas macleodii MIT1002 1696 8.9503E-6 2.23758E-6 K07017 nan Predicted hydrolase of the alpha/beta superfamily (YbbA) (PDB:3GFF)!!!Type IV pilus assembly protein PilF/PilW (PilF) (PDB:2VQ2) (PUBMED:16403447) VTP50749.1
Alteromonas macleodii MIT1002 1697 nan VTP50750.1
Alteromonas macleodii MIT1002 1698 nan ATP-dependent DNA ligase (CDC9) (PDB:1A0I) VTP50751.1
Alteromonas macleodii MIT1002 1699 0.025216954 0.004507348 0.015899366 0.025767485 K01682 Citrate cycle (TCA cycle, Krebs cycle) Aconitase B (AcnB) (PDB:1L5J) VTP50752.1
Alteromonas macleodii MIT1002 1700 5.31161E-5 1.00331E-4 8.45924E-5 5.90179E-6 K09005 nan Uncharacterized conserved membrane protein, UPF0127 family (PDB:3M7A) VTP50753.1
Alteromonas macleodii MIT1002 1701 0.001750901 0.007858815 0.005494903 0.001493358 K00928 Threonine biosynthesis, aspartate => homoserine => threonine Aspartate kinase (MetL1) (PDB:2CDQ) VTP50754.1
Alteromonas macleodii MIT1002 1702 nan VTP50755.1
Alteromonas macleodii MIT1002 1703 0.005215753 0.005746331 0.003027772 0.006500664 K03406 nan Methyl-accepting chemotaxis protein (MCP) (Tar) (PDB:1QU7) VTP50756.1
Alteromonas macleodii MIT1002 1704 K01525 nan Diadenosine tetraphosphatase ApaH/serine/threonine protein phosphatase, PP2A family (ApaH) (PDB:1AUI) VTP50757.1
Alteromonas macleodii MIT1002 1705 7.09167E-6 8.03724E-5 3.30945E-5 7.09167E-6 K06195 nan Uncharacterized conserved protein ApaG affecting Mg2+/Co2+ transport (ApaG) (PDB:1TZA) VTP50758.1
Alteromonas macleodii MIT1002 1706 2.23839E-5 2.34498E-5 1.65215E-4 K02528 nan 16S rRNA A1518 and A1519 N6-dimethyltransferase RsmA/KsgA/DIM1 (may also have DNA glycosylase/AP lyase activity) (RsmA) (PDB:1QYR) VTP50759.1
Alteromonas macleodii MIT1002 1707 1.55498E-4 8.8473E-5 3.91426E-4 6.7025E-6 K00097 Pyridoxal-P biosynthesis, erythrose-4P => pyridoxal-P 4-hydroxy-L-threonine phosphate dehydrogenase PdxA (PdxA) (PDB:1PS6) VTP50760.1
Alteromonas macleodii MIT1002 1708 0.001836306 0.001925547 0.001593295 0.002012042 K03771 nan Peptidyl-prolyl isomerase, parvulin family (SurA) (PDB:2ZR5) VTP50761.1
Alteromonas macleodii MIT1002 1709 8.26605E-4 1.00443E-4 1.22721E-4 1.43044E-4 K04744 nan LPS assembly outer membrane protein LptD (organic solvent tolerance protein OstA) (LptD) (PDB:4N4R) VTP50762.1
Alteromonas macleodii MIT1002 1710 1.57835E-4 4.40709E-5 1.43486E-5 1.12227E-4 K05801 nan DnaJ domain-containing protein (DjlA) (PUBMED:15489435;11106641) VTP50763.1
Alteromonas macleodii MIT1002 1711 K04763 nan Site-specific recombinase XerD (XerD) (PDB:1A0P) VTP50764.1
Alteromonas macleodii MIT1002 1712 6.77845E-5 7.20593E-5 2.38162E-5 K03981 nan Protein thiol-disulfide isomerase DsbC (DsbG) (PDB:2HI7) VTP50765.1
Alteromonas macleodii MIT1002 1713 1.12543E-5 K07462 nan ssDNA-specific exonuclease RecJ, DHH superfamily, may be involved in archaeal DNA replication intiation (RecJ) (PDB:1IR6) VTP50766.1
Alteromonas macleodii MIT1002 1714 nan VTP50767.1
Alteromonas macleodii MIT1002 1715 K03584 nan Recombinational DNA repair protein RecO (RecF pathway) (RecO) (PDB:1U5K) VTP50768.1
Alteromonas macleodii MIT1002 1716 1.78266E-4 2.29712E-4 3.40979E-4 1.09472E-4 K03474 Pyridoxal-P biosynthesis, erythrose-4P => pyridoxal-P Pyridoxine 5'-phosphate synthase PdxJ (PdxJ) (PDB:1HO1) VTP50769.1
Alteromonas macleodii MIT1002 1717 K00997 nan Phosphopantetheinyl transferase (holo-ACP synthase) (AcpS) (PDB:1F7L) VTP50770.1
Alteromonas macleodii MIT1002 1718 1.83202E-6 K03215 nan tRNA/tmRNA/rRNA uracil-C5-methylase, TrmA/RlmC/RlmD family (TrmA) (PDB:1UWV) VTP50771.1
Alteromonas macleodii MIT1002 1719 1.04831E-5 5.52377E-5 1.31441E-4 1.51198E-5 nan (p)ppGpp synthase/hydrolase, HD superfamily (SpoT) (PDB:1TDJ) VTP50772.1
Alteromonas macleodii MIT1002 1720 2.76531E-6 K04765 nan Uncharacterized conserved protein YabN, contains tetrapyrrole methylase and MazG-like pyrophosphatase domain (YabN) VTP50773.1
Alteromonas macleodii MIT1002 1721 K00021 C5 isoprenoid biosynthesis, mevalonate pathway Hydroxymethylglutaryl-CoA reductase (HMG1) (PDB:1DQ8) VTP50774.1
Alteromonas macleodii MIT1002 1722 4.09008E-6 nan Type IV pilus assembly protein PilF/PilW (PilF) (PDB:2VQ2) (PUBMED:16403447) VTP50775.1
Alteromonas macleodii MIT1002 1723 5.40956E-5 nan Type IV pilus assembly protein PilF/PilW (PilF) (PDB:2VQ2) (PUBMED:16403447) VTP50776.1
Alteromonas macleodii MIT1002 1724 nan Short-chain dehydrogenase (YqjQ) VTP50777.1
Alteromonas macleodii MIT1002 1725 1.84023E-5 9.85838E-6 nan Pyrroloquinoline quinone (PQQ) biosynthesis protein C (PqqC) (PDB:1OTV) VTP50778.1
Alteromonas macleodii MIT1002 1726 nan Long-chain acyl-CoA synthetase (AMP-forming) (FAA1) VTP50779.1
Alteromonas macleodii MIT1002 1727 nan VTP50780.1
Alteromonas macleodii MIT1002 1728 K07264 nan PMT family glycosyltransferase ArnT/Agl22, involved in glycosylation of proteins and lipid IVA (ArnT) (PDB:5EZM) (PUBMED:16226890;31233657;32706435) VTP50781.1
Alteromonas macleodii MIT1002 1729 nan Uncharacterized membrane protein YdjX, related to fungal oxalate transporter, TVP38/TMEM64 family (TVP38) (PUBMED:20889782) VTP50782.1
Alteromonas macleodii MIT1002 1730 8.97313E-6 nan Glycosyltransferase involved in cell wall bisynthesis (WcaA) (PDB:5MLZ) VTP50783.1
Alteromonas macleodii MIT1002 1731 1.50964E-5 nan VTP50784.1
Alteromonas macleodii MIT1002 1732 K07243 nan High-affinity Fe2+/Pb2+ permease (FTR1) VTP50785.1
Alteromonas macleodii MIT1002 1733 nan Iron uptake system EfeUOB, periplasmic (or lipoprotein) component EfeO/EfeM (EfeO) (PDB:3AT7) VTP50786.1
Alteromonas macleodii MIT1002 1734 1.02491E-5 5.12452E-6 2.04981E-6 nan Signal transduction histidine kinase (BaeS) (PDB:1JOY) VTP50787.1
Alteromonas macleodii MIT1002 1735 2.58637E-5 K02483 nan DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain (OmpR) (PDB:1XHF) VTP50788.1
Alteromonas macleodii MIT1002 1736 2.12261E-5 4.14414E-5 1.48583E-4 7.58075E-5 nan ABC-type amino acid transport/signal transduction system, periplasmic component/domain (HisJ) (PDB:1GGG) VTP50789.1
Alteromonas macleodii MIT1002 1737 0.013213217 0.006923469 0.012693028 0.13571054 K02871 nan Ribosomal protein L13 (RplM) (PDB:1VS6) VTP50790.1
Alteromonas macleodii MIT1002 1738 0.011077774 0.007686573 0.008207429 0.0202728 K02996 nan Ribosomal protein S9 (RpsI) (PDB:4V4H) VTP50791.1
Alteromonas macleodii MIT1002 1739 0.005752179 0.005741013 0.006004823 0.02178528 K00411 Cytochrome bc1 complex respiratory unit Rieske Fe-S protein (QcrA/PetC) (PDB:5CXM) (PUBMED:27663073) VTP50792.1
Alteromonas macleodii MIT1002 1740 9.21143E-4 3.78761E-4 3.13314E-4 1.9321E-4 K00412 Cytochrome bc1 complex respiratory unit Cytochrome b subunit of the bc complex (QcrB/PetB) (PDB:1VF5) VTP50793.1
Alteromonas macleodii MIT1002 1741 0.006260087 0.003260386 0.004692362 0.007629593 K00413 Cytochrome bc1 complex respiratory unit Cytochrome c1 (CYT1) VTP50794.1
Alteromonas macleodii MIT1002 1742 7.32806E-4 0.00104547 8.64013E-4 0.001945077 K03599 nan Glutathione S-transferase (GstA) (PDB:1A0F) VTP50795.1
Alteromonas macleodii MIT1002 1743 1.40027E-5 8.12157E-5 5.60107E-6 K03600 nan Stringent starvation protein B, binds SsrA peptide (SspB) (PDB:1OU8) VTP50796.1
Alteromonas macleodii MIT1002 1744 nan VTP50797.1
Alteromonas macleodii MIT1002 1745 nan VTP50798.1
Alteromonas macleodii MIT1002 1746 nan DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain (OmpR) (PDB:1XHF) VTP50799.1
Alteromonas macleodii MIT1002 1747 1.9455E-4 4.99346E-5 7.97656E-5 1.9455E-5 K06213 nan Mg/Co/Ni transporter MgtE (contains CBS domain) (MgtE) (PDB:2YVX) VTP50800.1
Alteromonas macleodii MIT1002 1748 K08485 nan HPr or related phosphotransfer protein (PtsH) (PDB:1CM2) VTP50801.1
Alteromonas macleodii MIT1002 1749 2.50354E-5 8.44945E-5 1.01184E-4 1.25177E-5 K06958 nan RNase adaptor protein RapZ for GlmZ sRNA degradation, contains a P-loop ATPase domain (RapZ) (PDB:5O5O) (PUBMED:23475961) VTP50802.1
Alteromonas macleodii MIT1002 1750 5.98209E-6 3.88836E-5 6.5803E-5 5.38388E-5 K02806 nan Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) (PtsN) (PDB:2OQ3) VTP50803.1
Alteromonas macleodii MIT1002 1751 K05808 nan Ribosome-associated translation inhibitor RaiA (RaiA) (PDB:1IMU) VTP50804.1
Alteromonas macleodii MIT1002 1752 4.3998E-5 6.45107E-4 5.63057E-4 1.15941E-4 K03092 nan DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog (RpoN) (PDB:5BYH) VTP50805.1
Alteromonas macleodii MIT1002 1753 9.6329E-4 2.01902E-4 2.77311E-4 1.82442E-4 K06861 nan ABC-type lipopolysaccharide export system, ATPase component (LptB) (PDB:5L75) (PUBMED:12029038) VTP50806.1
Alteromonas macleodii MIT1002 1754 3.99857E-4 3.45693E-4 5.40046E-4 2.77192E-4 K09774 nan Lipopolysaccharide export system protein LptA (LptA) (PDB:2R19) VTP50807.1
Alteromonas macleodii MIT1002 1755 8.70207E-5 3.35869E-5 2.97703E-5 9.38908E-5 K11719 nan Lipopolysaccharide export system protein LptC (YrbK) (PDB:3MY2) VTP50808.1
Alteromonas macleodii MIT1002 1756 9.50233E-5 9.1802E-5 3.49492E-4 4.34852E-5 K03270 CMP-KDO biosynthesis 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase KdsC and related HAD superfamily phosphatases (KdsC) (PDB:3I6B) VTP50809.1
Alteromonas macleodii MIT1002 1757 2.69744E-5 1.69939E-4 8.22721E-5 K06041 CMP-KDO biosynthesis D-arabinose 5-phosphate isomerase GutQ (GutQ) (PDB:5UQI)!!!Signal-transduction protein containing cAMP-binding, CBS, and nucleotidyltransferase domains VTP50810.1
Alteromonas macleodii MIT1002 1758 K07301 nan Ca2+/Na+ antiporter (ECM27) (PDB:3V5S) VTP50811.1
Alteromonas macleodii MIT1002 1759 9.93972E-4 3.1406E-4 3.46017E-4 4.03319E-4 K02065 nan ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla (MlaF) (PDB:6IC4) VTP50812.1
Alteromonas macleodii MIT1002 1760 1.38609E-4 4.2605E-5 8.86182E-5 K02066 nan Permease subunit MlaE of the ABC-type intermembrane phospholipid transporter Mla (MlaE) (PDB:6IC4) VTP50813.1
Alteromonas macleodii MIT1002 1761 5.60107E-6 5.04096E-5 8.96171E-5 K02067 nan Periplasmic subunit MlaD of the ABC-type intermembrane phospholipid transporter Mla (MlaD) (PDB:5UW8) VTP50814.1
Alteromonas macleodii MIT1002 1762 1.07434E-4 7.79891E-4 0.001151268 4.01883E-4 K07323 nan Periplasmic subunit MlaC of the ABC-type intermembrane phospholipid transporter Mla (MlaC) (PDB:2QGU) (PUBMED:19383799) VTP50815.1
Alteromonas macleodii MIT1002 1763 3.70714E-4 7.75912E-5 1.07766E-4 3.4485E-5 K07122 nan Binding protein subunit MlaB of the ABC-type intermembrane phospholipid transporter Mla, contains STAS domain (MlaB) VTP50816.1
Alteromonas macleodii MIT1002 1764 2.58637E-5 1.72425E-4 5.72451E-4 K05527 nan Acid stress protein IbaG/YrbA, BolA-like family (IbaG) (PDB:1NY8) (PUBMED:22534295) VTP50817.1
Alteromonas macleodii MIT1002 1765 1.99602E-4 5.21339E-4 0.001007783 5.23433E-6 K00790 nan UDP-N-acetylglucosamine enolpyruvyl transferase (MurA) (PDB:1A2N) VTP50818.1
Alteromonas macleodii MIT1002 1766 6.10123E-4 1.06216E-4 3.01356E-4 4.17452E-4 nan Periplasmic serine protease, S1-C subfamily, contain C-terminal PDZ domain (DegQ) (PDB:2HGA) (PUBMED:29686141) VTP50819.1
Alteromonas macleodii MIT1002 1767 0.00118924 0.002023511 9.36703E-4 0.003216939 K04772 nan Periplasmic serine protease, S1-C subfamily, contain C-terminal PDZ domain (DegQ) (PDB:2HGA) (PUBMED:29686141) VTP50820.1
Alteromonas macleodii MIT1002 1768 6.63597E-4 2.01522E-4 5.29249E-4 0.001032035 K09908 nan Uncharacterized membrane-anchored protein YhcB, DUF1043 family (YhcB) VTP50821.1
Alteromonas macleodii MIT1002 1769 8.11106E-5 2.73045E-5 1.68646E-4 1.2528E-4 K06916 nan Cell division protein ZapE (Z ring-associated ATPase), AFG1 superfamily (ZapE) VTP50822.1
Alteromonas macleodii MIT1002 1770 1.70988E-5 6.90059E-4 5.74032E-4 2.12514E-4 K18189 nan Transcriptional and/or translational regulatory protein YebC/TACO1 (TACO1) (PDB:1KON) VTP50823.1
Alteromonas macleodii MIT1002 1771 1.61352E-5 K10679 nan Nitroreductase (NfnB) (PDB:1F5V) VTP50824.1
Alteromonas macleodii MIT1002 1772 nan VTP50826.1
Alteromonas macleodii MIT1002 1773 K12257 nan Preprotein translocase subunit SecF (SecF) (PDB:2FYH) (PUBMED:28830929)!!!Preprotein translocase subunit SecD (SecD) (PDB:3AQP) (PUBMED:26100040) VTP50827.1
Alteromonas macleodii MIT1002 1774 K11105 nan NhaP-type Na+/H+ and K+/H+ antiporter with C-terminal TrkAC and CorC domains (NhaP2) VTP50828.1
Alteromonas macleodii MIT1002 1775 nan VTP50829.1
Alteromonas macleodii MIT1002 1776 0.011793554 0.007853476 0.005146007 0.00899484 K02014 nan Outer membrane receptor protein, Fe transport (CirA) (PDB:1BY3) VTP50830.1
Alteromonas macleodii MIT1002 1777 K03298 nan Permease of the drug/metabolite transporter (DMT) superfamily (RhaT) (PDB:5I20) VTP50831.1
Alteromonas macleodii MIT1002 1778 K02030 nan ABC-type amino acid transport/signal transduction system, periplasmic component/domain (HisJ) (PDB:1GGG) VTP50832.1
Alteromonas macleodii MIT1002 1779 7.94701E-6 1.25318E-5 4.27916E-6 1.3296E-5 K20974 nan Signal transduction histidine kinase (BaeS) (PDB:1JOY)!!!CheY-like REC (receiver) domain, includes chemotaxis protein CheY  and sporulation regulator Spo0F (CheY) (PDB:6QRJ)!!!PAS domain (PAS) (PDB:2MWG) VTP50833.1
Alteromonas macleodii MIT1002 1780 K01999 nan ABC-type branched-chain amino acid transport system, periplasmic component (LivK) (PDB:1USG) VTP50834.1
Alteromonas macleodii MIT1002 1781 K09951 nan DNA polymerase III, epsilon subunit or related 3'-5' exonuclease (DnaQ) (PDB:1J53) VTP50835.1
Alteromonas macleodii MIT1002 1782 nan VTP50836.1
Alteromonas macleodii MIT1002 1783 0.001340208 0.001947226 0.00284121 0.007002626 K00789 Cysteine biosynthesis, methionine => cysteine S-adenosylmethionine synthetase (MetK) (PDB:1FUG) VTP50837.1
Alteromonas macleodii MIT1002 1784 0.00720029 0.007014602 0.014618985 0.008022404 K00615 Pentose phosphate pathway (Pentose phosphate cycle) Transketolase (TktA) (PDB:1AY0) VTP50838.1
Alteromonas macleodii MIT1002 1785 2.35545E-5 7.85152E-6 4.7109E-5 K03472 Pyridoxal-P biosynthesis, erythrose-4P => pyridoxal-P Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase (GapA) (PDB:3ZDF) VTP50839.1
Alteromonas macleodii MIT1002 1786 0.001142503 0.003384028 0.002178552 0.002458181 K00927 Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate 3-phosphoglycerate kinase (Pgk) (PDB:13PK) VTP50840.1
Alteromonas macleodii MIT1002 1787 0.00454977 0.001067593 0.002444974 0.006570257 K01623 Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate Fructose-bisphosphate aldolase class 1 (Fba1) VTP50841.1
Alteromonas macleodii MIT1002 1788 nan VTP50842.1
Alteromonas macleodii MIT1002 1789 K03585 Multidrug resistance, efflux pump MexAB-OprM Multidrug efflux pump subunit AcrA (membrane-fusion protein) (AcrA) (PDB:1T5E) VTP50843.1
Alteromonas macleodii MIT1002 1790 1.38135E-5 7.45929E-6 nan Multidrug efflux pump subunit AcrB (AcrB) (PDB:1IWG) VTP50844.1
Alteromonas macleodii MIT1002 1791 1.72775E-5 7.14933E-6 K18139 Multidrug resistance, efflux pump MexAB-OprM Outer membrane protein TolC (TolC) (PDB:1EK9) VTP50845.1
Alteromonas macleodii MIT1002 1792 nan VTP50846.1
Alteromonas macleodii MIT1002 1793 1.03504E-4 4.80257E-5 1.06402E-4 1.52151E-4 K01303 nan Dipeptidyl aminopeptidase/acylaminoacyl peptidase (DAP2) (PDB:2JBW) VTP50847.1
Alteromonas macleodii MIT1002 1794 2.81849E-5 1.38106E-4 1.17813E-4 8.96277E-5 K01524 nan Exopolyphosphatase/pppGpp-phosphohydrolase (GppA) (PDB:1T6C) VTP50848.1
Alteromonas macleodii MIT1002 1795 0.001048869 0.001225592 7.75288E-4 5.38454E-4 K00937 nan Polyphosphate kinase (Ppk) (PDB:1XDO) VTP50849.1
Alteromonas macleodii MIT1002 1796 2.09373E-5 9.42178E-5 1.5703E-5 8.37493E-5 nan Glycine cleavage system regulator GcvR (GcvR) (PDB:1U8S) VTP50850.1
Alteromonas macleodii MIT1002 1797 1.21292E-5 1.21292E-6 K02037 nan ABC-type uncharacterized transport system, permease component VTP50851.1
Alteromonas macleodii MIT1002 1798 5.08305E-6 K02038 nan ABC-type phosphate transport system, permease component (PstA)!!!ABC-type phosphate transport system, auxiliary component PstA (PstA) VTP50852.1
Alteromonas macleodii MIT1002 1799 1.46561E-4 8.20305E-5 8.20305E-5 5.57807E-5 K02036 nan ABC-type phosphate transport system, ATPase component (PstB) VTP50853.1
Alteromonas macleodii MIT1002 1800 3.69482E-6 1.47793E-5 3.69482E-6 K02039 nan Phosphate uptake regulator PhoU (PhoU) (PDB:1T8B) VTP50854.1
Alteromonas macleodii MIT1002 1801 3.4648E-5 8.31553E-6 K03306 nan Phosphate/sulfate permease (PitA) (PUBMED:31358606) VTP50855.1
Alteromonas macleodii MIT1002 1802 8.79369E-5 3.49943E-4 2.11048E-4 2.29988E-5 K14055 nan Nucleotide-binding universal stress protein,  UspA family (UspA) (PDB:1JMV) VTP50856.1
Alteromonas macleodii MIT1002 1803 2.81475E-5 4.6589E-5 2.62063E-4 2.91181E-5 K04761 nan DNA-binding transcriptional regulator, LysR family (LysR) (PDB:2FYI) VTP50858.1
Alteromonas macleodii MIT1002 1804 K03088 nan DNA-directed RNA polymerase specialized sigma subunit, sigma24 family (RpoE) (PDB:2Q1Z) VTP50859.1
Alteromonas macleodii MIT1002 1805 nan VTP50860.1
Alteromonas macleodii MIT1002 1806 3.18408E-5 2.80948E-6 2.80948E-6 nan VTP50861.1
Alteromonas macleodii MIT1002 1807 6.36495E-5 1.25624E-5 nan VTP50862.1
Alteromonas macleodii MIT1002 1808 K11068 nan Predicted membrane channel-forming protein YqfA, hemolysin III family (YqfA) (PDB:3WXV) VTP50863.1
Alteromonas macleodii MIT1002 1809 nan VTP50864.1
Alteromonas macleodii MIT1002 1810 5.98209E-6 K23775 nan DNA-binding transcriptional regulator, MarR family (MarR) (PDB:1JGS) VTP50865.1
Alteromonas macleodii MIT1002 1811 4.95418E-5 5.57346E-5 2.47709E-5 K04063 nan Organic hydroperoxide reductase OsmC/OhrA (OsmC) (PDB:1QWI) VTP50866.1
Alteromonas macleodii MIT1002 1812 0.001780616 9.49571E-4 8.79823E-4 8.2398E-4 K01254 nan Aminopeptidase N, contains DUF3458 domain (PepN) (PDB:6ATK) (PUBMED:24123841) VTP50867.1
Alteromonas macleodii MIT1002 1813 1.97611E-5 4.94027E-6 nan Peroxiredoxin (Bcp) (PDB:5IPH) VTP50868.1
Alteromonas macleodii MIT1002 1814 nan VTP51152.1
Alteromonas macleodii MIT1002 1815 0.003651969 0.001931977 0.003237504 0.002623848 K20920 nan Uncharacterized conserved protein VTP51849.1
Alteromonas macleodii MIT1002 1816 1.4173E-4 4.5901E-4 8.84199E-4 4.88001E-4 K20988 nan Periplasmic protein Wza involved in polysaccharide export, contains SLBB domain of the beta-grasp fold (Wza) (PDB:2J58) (PUBMED:17250770) VTP51851.1
Alteromonas macleodii MIT1002 1817 0.003560763 0.00175516 0.002549927 0.001699753 K16554 nan Fe-S cluster carrier ATPase, Mrp/ApbC/NBP35 family (Mrp) (PDB:2PH1) (PUBMED:18616280;19114487;31709520)!!!Exopolysaccharide export protein/domain GumC/Wzc1 (GumC) (PUBMED:15003255;23089617) VTP51853.1
Alteromonas macleodii MIT1002 1818 3.74199E-6 3.74199E-6 2.4323E-5 nan Tyrosine-protein phosphatase YwqE (YwqE) (PDB:3QY6) VTP51855.1
Alteromonas macleodii MIT1002 1819 6.92415E-6 3.46208E-6 1.38483E-5 nan VTP51857.1
Alteromonas macleodii MIT1002 1820 nan VTP51860.1
Alteromonas macleodii MIT1002 1821 K18814 nan O-antigen ligase (RfaL) VTP51862.1
Alteromonas macleodii MIT1002 1822 nan VTP51864.1
Alteromonas macleodii MIT1002 1823 2.14957E-4 1.2861E-4 7.49848E-5 2.79489E-5 K18765 nan GGDEF domain, diguanylate cyclase (c-di-GMP synthetase) or its enzymatically inactive variants (GGDEF) (PDB:6D9M)!!!EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant) (EAL) (PDB:2BAS) VTP51866.1
Alteromonas macleodii MIT1002 1824 8.25696E-6 4.12849E-6 4.12849E-6 nan Predicted transglutaminase-like protein (PDB:4FGO) VTP51868.1
Alteromonas macleodii MIT1002 1825 2.70694E-5 3.71237E-5 1.62416E-5 3.9444E-5 K17248 nan Glycosyltransferase involved in cell wall bisynthesis (RfaB) (PDB:2IV7) VTP51870.1
Alteromonas macleodii MIT1002 1826 1.98503E-6 nan VTP51872.1
Alteromonas macleodii MIT1002 1827 9.18979E-5 4.278E-5 1.426E-5 5.94167E-6 K12996 nan Glycosyltransferase involved in cell wall bisynthesis (RfaB) (PDB:2IV7) VTP51873.1
Alteromonas macleodii MIT1002 1828 2.13735E-5 6.61561E-5 5.80138E-5 7.63338E-6 K17250 nan Glycosyltransferase involved in cell wall bisynthesis (WcaA) (PDB:5MLZ) VTP51875.1
Alteromonas macleodii MIT1002 1829 2.90121E-5 1.2005E-5 3.00125E-6 nan Glycosyltransferase, catalytic subunit of cellulose synthase and poly-beta-1,6-N-acetylglucosamine synthase (BcsA) (PDB:4HG6) VTP51877.1
Alteromonas macleodii MIT1002 1830 1.85521E-6 nan Membrane protein involved in the export of O-antigen and teichoic acid (RfbX) VTP51879.1
Alteromonas macleodii MIT1002 1831 4.47926E-4 2.16437E-4 6.9518E-5 1.76304E-4 K16703 nan Glycosyltransferase involved in cell wall bisynthesis (RfaB) (PDB:2IV7) VTP51881.1
Alteromonas macleodii MIT1002 1832 4.84972E-5 8.27304E-5 6.13346E-5 9.0932E-5 K16710 nan Polysaccharide pyruvyl transferase family protein WcaK (colanic acid biosynthesis) (WcaK) VTP51883.1
Alteromonas macleodii MIT1002 1833 nan Ca2+-binding protein, RTX toxin-related (PDB:1AF0) (PUBMED:15135544) VTP51885.1
Alteromonas macleodii MIT1002 1834 2.39517E-5 3.42166E-6 8.55418E-6 nan VTP51887.1
Alteromonas macleodii MIT1002 1835 4.2636E-6 nan VTP51889.1
Alteromonas macleodii MIT1002 1836 nan Putative flippase GtrA (transmembrane translocase of bactoprenol-linked glucose) (GtrA) (PDB:5MLZ) (PUBMED:24710389) VTP51891.1
Alteromonas macleodii MIT1002 1837 5.14382E-4 5.106E-5 6.24067E-5 1.38997E-4 K20534 nan Glycosyltransferase involved in cell wall bisynthesis (WcaA) (PDB:5MLZ) VTP51893.1
Alteromonas macleodii MIT1002 1838 2.05426E-4 2.58284E-5 4.62509E-5 5.85644E-5 K14340 nan Uncharacterized membrane protein PF0508, contains N-terminal glycosyltransferase domain of PMT family VTP51895.1
Alteromonas macleodii MIT1002 1839 4.86154E-5 3.57467E-6 2.85973E-6 K16568 nan Peptidoglycan/LPS O-acetylase OafA/YrhL, contains acyltransferase and SGNH-hydrolase domains (OafA) VTP51896.1
Alteromonas macleodii MIT1002 1840 6.01007E-5 1.26528E-5 3.16319E-6 nan Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG (UbiE) (PDB:4OBW) VTP51898.1
Alteromonas macleodii MIT1002 1841 0.003306169 0.00304092 0.004064152 0.001166646 K01889 nan Phenylalanyl-tRNA synthetase alpha subunit (PheS) (PDB:3L4G) VTP51900.1
Alteromonas macleodii MIT1002 1842 0.004554644 0.006918796 0.005848438 0.003703851 K01890 nan Phenylalanyl-tRNA synthetase beta subunit (PheT) (PDB:3L4G)!!!tRNA-binding EMAP/Myf domain (EMAP) (PDB:1MKH) VTP51902.1
Alteromonas macleodii MIT1002 1843 3.25692E-4 0.001462651 0.001296845 9.10456E-4 K04764 nan Bacterial nucleoid DNA-binding protein IHF-alpha (HimA) (PDB:1B8Z) VTP51904.1
Alteromonas macleodii MIT1002 1844 1.45751E-5 3.56281E-5 1.94335E-5 nan VTP51906.1
Alteromonas macleodii MIT1002 1845 nan VTP51908.1
Alteromonas macleodii MIT1002 1846 K03976 nan Cys-tRNA(Pro) deacylase, prolyl-tRNA editing enzyme YbaK/EbsC (EbsC) (PDB:1DBU) VTP51910.1
Alteromonas macleodii MIT1002 1847 1.51324E-4 3.51747E-5 2.96786E-5 7.14486E-6 K01434 nan Acyl-homoserine lactone (AHL) acylase PvdQ (PvdQ) (PDB:4HST) VTP51912.1
Alteromonas macleodii MIT1002 1848 1.20698E-5 5.81935E-5 3.10365E-5 1.03455E-5 K01207 nan Periplasmic beta-glucosidase and related glycosidases (BglX) (PDB:2X40) VTP51914.1
Alteromonas macleodii MIT1002 1849 K00798 Cobalamin biosynthesis, cobyrinate a,c-diamide => cobalamin Cob(II)alamin adenosyltransferase (PduO) (PDB:1NOG) VTP51916.1
Alteromonas macleodii MIT1002 1850 3.49027E-4 1.41525E-4 1.45554E-4 5.51494E-4 nan VTP51918.1
Alteromonas macleodii MIT1002 1851 3.01929E-6 1.68577E-4 3.74895E-5 3.01929E-6 K03723 nan Transcription-repair coupling factor (superfamily II helicase) (Mfd) (PDB:2EYQ) VTP51920.1
Alteromonas macleodii MIT1002 1852 4.98308E-5 3.95715E-5 9.01352E-5 nan VTP51922.1
Alteromonas macleodii MIT1002 1853 9.4122E-6 3.3615E-5 8.06759E-6 8.06759E-6 K09808 nan ABC-type transport system involved in lipoprotein release, permease component LolC (LolE) (PDB:6F49) VTP51924.1
Alteromonas macleodii MIT1002 1854 9.5931E-4 3.29175E-4 0.00100947 1.17562E-4 K07101 nan Hypoxanthine phosphoribosyltransferase (Hpt1) (PDB:2JKZ) VTP51926.1
Alteromonas macleodii MIT1002 1855 nan FIST domain protein MJ1623, contains FIST_N and FIST_C domains (FIST) (PUBMED:17855421) VTP51928.1
Alteromonas macleodii MIT1002 1856 nan Uncharacterized membrane protein VTP51930.1
Alteromonas macleodii MIT1002 1857 6.21114E-5 4.6856E-5 1.0134E-4 K01142 nan Exonuclease III (XthA) (PDB:1AKO) VTP51932.1
Alteromonas macleodii MIT1002 1858 3.67936E-6 3.67936E-6 nan Heme oxygenase (HemO) (PDB:1J77) VTP51934.1
Alteromonas macleodii MIT1002 1859 8.39093E-5 3.35637E-5 nan VTP51936.1
Alteromonas macleodii MIT1002 1860 K02426 nan Sulfur transfer protein SufE, Fe-S cluster assembly (SufE) (PDB:1MZG) VTP51938.1
Alteromonas macleodii MIT1002 1861 nan Glycosyltransferase involved in cell wall bisynthesis (RfaB) (PDB:2IV7) VTP51940.1
Alteromonas macleodii MIT1002 1862 1.77334E-5 1.77334E-5 1.55428E-4 5.00707E-5 nan HD-like signal output (HDOD) domain, no enzymatic activity (HDOD) (PDB:1VQR) VTP51942.1
Alteromonas macleodii MIT1002 1863 3.2449E-6 2.0551E-5 1.29796E-5 nan Acyl-CoA thioesterase (TesB) (PDB:1C8U) VTP51944.1
Alteromonas macleodii MIT1002 1864 K23677 nan Sugar phosphate permease (UhpC) (PDB:1PW4) VTP51946.1
Alteromonas macleodii MIT1002 1865 1.30277E-5 6.51385E-6 nan 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase MenH and related esterases, alpha/beta hydrolase fold (MenH) (PDB:4MYS) VTP51948.1
Alteromonas macleodii MIT1002 1866 0.004679686 0.002028572 0.003866751 0.002681249 K00975 Glycogen biosynthesis, glucose-1P => glycogen/starch Glucose-1-phosphate adenylyltransferase (ADP-glucose pyrophosphorylase) (GlgC) (PDB:5MNI) (PUBMED:27545622) VTP51950.1
Alteromonas macleodii MIT1002 1867 2.21912E-4 4.47136E-5 7.94908E-5 9.06693E-4 nan Carbon monoxide dehydrogenase subunit CoxG (CoxG) (PDB:2NS9) VTP51952.1
Alteromonas macleodii MIT1002 1868 nan Sugar phosphate permease (UhpC) (PDB:1PW4) VTP51954.1
Alteromonas macleodii MIT1002 1869 K07491 nan REP element-mobilizing transposase RayT (RAYT) (PDB:4ER8) VTP51956.1
Alteromonas macleodii MIT1002 1870 1.67218E-5 1.67218E-5 9.00022E-5 K01640 Ketone body biosynthesis, acetyl-CoA => acetoacetate/3-hydroxybutyrate/acetone Isopropylmalate/homocitrate/citramalate synthases (LeuA) (PDB:4JN6) VTP51958.1
Alteromonas macleodii MIT1002 1871 6.18087E-4 2.74366E-4 3.79053E-4 0.004070346 K01968 Leucine degradation, leucine => acetoacetate + acetyl-CoA Acetyl/propionyl-CoA carboxylase, alpha subunit (PccA) (PDB:3U9S) VTP51960.1
Alteromonas macleodii MIT1002 1872 5.65308E-4 1.49867E-4 4.55111E-4 0.004786932 K13766 Leucine degradation, leucine => acetoacetate + acetyl-CoA Enoyl-CoA hydratase/carnithine racemase (CaiD) (PDB:1DCI) VTP51962.1
Alteromonas macleodii MIT1002 1873 0.001140164 5.00774E-4 6.37199E-4 0.002972591 K01969 Leucine degradation, leucine => acetoacetate + acetyl-CoA Acetyl-CoA carboxylase, carboxyltransferase component (MmdA) (PDB:1OD2) VTP51964.1
Alteromonas macleodii MIT1002 1874 0.001482943 0.001303604 0.001122757 0.008321212 K00253 beta-Oxidation Acyl-CoA dehydrogenase related to the alkylation response protein AidB (CaiA) (PDB:1BUC) VTP51966.1
Alteromonas macleodii MIT1002 1875 6.51383E-6 6.51383E-6 nan DNA-binding transcriptional regulator, MerR family (SoxR) (PDB:2VZ4) VTP51969.1
Alteromonas macleodii MIT1002 1876 5.73501E-4 0.00144687 0.001335169 0.002323239 K00626 Ethylmalonyl pathway Acetyl-CoA acetyltransferase (PaaJ) (PDB:1AFW) VTP51971.1
Alteromonas macleodii MIT1002 1877 nan Acetyl esterase/lipase (Aes) (PDB:1EVQ) VTP51973.1
Alteromonas macleodii MIT1002 1878 5.34895E-6 2.13958E-6 5.34895E-6 K01556 Tryptophan metabolism, tryptophan => kynurenine => 2-aminomuconate Kynureninase (Bna5) VTP51975.1
Alteromonas macleodii MIT1002 1879 1.38384E-5 6.9192E-6 4.71763E-6 2.45317E-5 K02030 nan ABC-type amino acid transport/signal transduction system, periplasmic component/domain (HisJ) (PDB:1GGG)!!!Two-component response regulator, PleD family, consists of two REC domains and a diguanylate cyclase (GGDEF) domain (PleD) (PDB:1W25) VTP51977.1
Alteromonas macleodii MIT1002 1880 1.67043E-4 5.96884E-4 1.76618E-4 2.11464E-4 K09749 nan Flagellar assembly protein FapA, interacts with EIIAGlc (FapA) (PUBMED:27218601) VTP51979.1
Alteromonas macleodii MIT1002 1881 2.95586E-5 6.77384E-5 6.21962E-5 6.83542E-5 K01141 nan Exonuclease I (degrades ssDNA) (SbcB) (PDB:1FXX) VTP51981.1
Alteromonas macleodii MIT1002 1882 3.25692E-6 2.79164E-6 2.79164E-6 4.53642E-6 nan Signal transduction histidine kinase (BaeS) (PDB:1JOY)!!!CheY-like REC (receiver) domain, includes chemotaxis protein CheY  and sporulation regulator Spo0F (CheY) (PDB:6QRJ) VTP51983.1
Alteromonas macleodii MIT1002 1883 9.90836E-6 1.03212E-4 2.22938E-5 K13051 nan Isoaspartyl peptidase or L-asparaginase, Ntn-hydrolase superfamily (IaaA) (PDB:1APY) VTP51985.1
Alteromonas macleodii MIT1002 1884 6.32638E-6 nan Predicted transcriptional regulator, contains C-terminal CBS domains VTP51987.1
Alteromonas macleodii MIT1002 1885 K01083 nan 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) (Phy) (PDB:1CVM) VTP51989.1
Alteromonas macleodii MIT1002 1886 9.7599E-7 K02014 nan Outer membrane receptor protein, Fe transport (CirA) (PDB:1BY3) VTP51991.1
Alteromonas macleodii MIT1002 1887 nan Two-component response regulator, PleD family, consists of two REC domains and a diguanylate cyclase (GGDEF) domain (PleD) (PDB:1W25) VTP51994.1
Alteromonas macleodii MIT1002 1888 nan AraC-type DNA-binding domain and AraC-containing proteins (AraC) (PDB:1BL0) VTP51996.1
Alteromonas macleodii MIT1002 1889 K03315 nan Na+/H+ antiporter NhaC/MleN (NhaC) VTP51998.1
Alteromonas macleodii MIT1002 1890 6.60682E-7 2.18025E-5 3.34745E-5 1.65171E-6 K03578 nan HrpA-like RNA helicase (HrpA) (PDB:5N8R) VTP52000.1
Alteromonas macleodii MIT1002 1891 9.96617E-5 nan VTP52002.1
Alteromonas macleodii MIT1002 1892 nan Uncharacterized membrane protein, DUF2061 family (PUBMED:15901686) VTP52004.1
Alteromonas macleodii MIT1002 1893 8.86012E-6 4.87307E-5 1.57267E-4 1.08537E-4 K06969 nan 23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI (RlmK) (PDB:2B78) VTP52006.1
Alteromonas macleodii MIT1002 1894 3.69785E-5 2.70575E-6 K00344 nan NADPH:quinone reductase or related Zn-dependent oxidoreductase (Qor) (PDB:2VCY) VTP52008.1
Alteromonas macleodii MIT1002 1895 3.19428E-5 2.25479E-5 5.63697E-6 K03469 nan Ribonuclease HI (RnhA) (PDB:1LAW) VTP52010.1
Alteromonas macleodii MIT1002 1896 3.31143E-5 3.70389E-4 1.41042E-4 1.47174E-5 K02342 nan DNA polymerase III, epsilon subunit or related 3'-5' exonuclease (DnaQ) (PDB:1J53) VTP52012.1
Alteromonas macleodii MIT1002 1897 8.15543E-5 3.36855E-5 1.71382E-5 2.06545E-4 nan Secreted protein containing bacterial Ig-like domain and vWFA domain (YfbK) VTP52014.1
Alteromonas macleodii MIT1002 1898 nan VTP55644.1
Alteromonas macleodii MIT1002 1899 1.83584E-6 nan Arylsulfatase A or related enzyme, AlkP superfamily (AslA) (PDB:1E1Z) VTP55646.1
Alteromonas macleodii MIT1002 1900 1.73024E-5 1.83202E-5 9.49935E-6 1.01779E-5 nan Glycosyltransferase, GT2 family (WcaE) (PDB:2Z86) VTP55648.1
Alteromonas macleodii MIT1002 1901 2.01522E-5 2.74802E-6 nan VTP55650.1
Alteromonas macleodii MIT1002 1902 2.29098E-4 2.72295E-4 3.01607E-4 2.97365E-4 K20444 nan Glycosyltransferase involved in cell wall bisynthesis (WcaA) (PDB:5MLZ)!!!Glycosyltransferase, GT2 family (WcaE) (PDB:2Z86) VTP55652.1
Alteromonas macleodii MIT1002 1903 0.001114241 0.004002249 0.002557932 0.003662152 K16011 nan Mannose-6-phosphate isomerase, cupin superfamily (ManC) (PDB:1IPJ)!!!Mannose-1-phosphate guanylyltransferase (CpsB) (PDB:2QH5) VTP55654.1
Alteromonas macleodii MIT1002 1904 1.95415E-6 K02406 nan Flagellin and related hook-associated protein FlgL (FlgL) (PDB:1IO1) VTP55656.1
Alteromonas macleodii MIT1002 1905 nan VTP55658.1
Alteromonas macleodii MIT1002 1906 0.00742283 0.003934012 0.007735788 0.016952615 K02879 nan Ribosomal protein L17 (RplQ) (PDB:1GD8) VTP55660.1
Alteromonas macleodii MIT1002 1907 0.030037008 0.0373749 0.02842394 0.020114187 K03040 nan DNA-directed RNA polymerase, alpha subunit/40 kD subunit (RpoA) (PDB:4KN7) VTP55662.1
Alteromonas macleodii MIT1002 1908 0.017124897 0.02555857 0.025278253 0.15185949 K02986 nan Ribosomal protein S4 or related protein (RpsD) (PDB:4V4H) VTP55664.1
Alteromonas macleodii MIT1002 1909 0.006435165 0.004755348 0.003801573 0.006334828 K02948 nan Ribosomal protein S11 (RpsK) (PDB:4V4H) VTP55666.1
Alteromonas macleodii MIT1002 1910 0.042512693 0.02309954 0.030929387 0.04657666 K02952 nan Ribosomal protein S13 (RpsM) (PDB:4V4H) VTP55668.1
Alteromonas macleodii MIT1002 1911 2.17004E-4 2.17004E-4 1.02159E-4 2.90452E-4 K03076 nan Preprotein translocase subunit SecY (SecY) (PDB:1RH5) VTP55672.1
Alteromonas macleodii MIT1002 1912 0.018601064 0.018454501 0.017440787 0.0157706 K02876 nan Ribosomal protein L15 (RplO) (PDB:1VS6) VTP55674.1
Alteromonas macleodii MIT1002 1913 0.001495421 3.8255E-4 6.01149E-4 K02907 nan Ribosomal protein L30/L7E (RpmD) (PDB:1VS6) VTP55676.1
Alteromonas macleodii MIT1002 1914 0.027475815 0.01907415 0.02428855 0.09193097 K02988 nan Ribosomal protein S5 (RpsE) (PDB:4V4H) VTP55678.1
Alteromonas macleodii MIT1002 1915 0.011028419 0.003948384 0.011627191 0.005294994 K02881 nan Ribosomal protein L18 (RplR) (PDB:1VS6) VTP55680.1
Alteromonas macleodii MIT1002 1916 0.031632382 0.072737426 0.02447324 0.18649046 K02933 nan Ribosomal protein L6P/L9E (RplF) (PDB:1VS6) VTP55682.1
Alteromonas macleodii MIT1002 1917 0.013792539 0.013918807 0.005650499 0.037964996 K02994 nan Ribosomal protein S8 (RpsH) (PDB:4V4H) VTP55684.1
Alteromonas macleodii MIT1002 1918 0.006988504 0.032658484 0.006413867 0.08937333 K02954 nan Ribosomal protein S14 (RpsN) (PDB:4V4H) VTP55686.1
Alteromonas macleodii MIT1002 1919 0.059834644 0.09996949 0.11643184 1.2319814 K02931 nan Ribosomal protein L5 (RplE) (PDB:1VS6) VTP55688.1
Alteromonas macleodii MIT1002 1920 0.041180886 0.014410914 0.05311435 0.17891744 K02895 nan Ribosomal protein L24 (RplX) (PDB:1VS6) VTP55690.1
Alteromonas macleodii MIT1002 1921 0.026573231 0.025768347 0.032793675 0.102705784 K02874 nan Ribosomal protein L14 (RplN) (PDB:4V4H) VTP55692.1
Alteromonas macleodii MIT1002 1922 nan Signal transduction histidine kinase (BaeS) (PDB:1JOY)!!!CheY-like REC (receiver) domain, includes chemotaxis protein CheY  and sporulation regulator Spo0F (CheY) (PDB:6QRJ)!!!GAF domain (GAF) VTP55694.1
Alteromonas macleodii MIT1002 1923 nan VTP55696.1
Alteromonas macleodii MIT1002 1924 K14645 nan Serine protease, subtilisin family (AprE) (PDB:1SCJ) VTP55698.1
Alteromonas macleodii MIT1002 1925 nan
Alteromonas macleodii MIT1002 1926 3.03846E-5 1.82308E-4 2.49035E-4 8.93666E-5 K03218 nan tRNA G18 (ribose-2'-O)-methylase SpoU (SpoU) (PDB:1GZ0) VTP55700.1
Alteromonas macleodii MIT1002 1927 6.33581E-5 6.94391E-4 3.20796E-4 6.17196E-5 K12573 nan Exoribonuclease R (VacB) (PDB:6H25) VTP55702.1
Alteromonas macleodii MIT1002 1928 K01113 Tetrahydrofolate biosynthesis, GTP => THF Phosphodiesterase/alkaline phosphatase D (PhoD) (PDB:2YEQ) VTP55704.1
Alteromonas macleodii MIT1002 1929 K19092 nan Plasmid stabilization system protein ParE (ParE) (PDB:3KXE) VTP55706.1
Alteromonas macleodii MIT1002 1930 K18918 nan Predicted transcriptional regulator, contains ribbon-helix-helix (RHH_1) domain (PutA1) (PDB:6IYA) VTP55708.1
Alteromonas macleodii MIT1002 1931 K02014 nan Outer membrane receptor protein, Fe transport (CirA) (PDB:1BY3) VTP55710.1
Alteromonas macleodii MIT1002 1932 2.71059E-4 nan Uncharacterized conserved protein VTP55712.1
Alteromonas macleodii MIT1002 1933 nan Cytochrome b subunit of Ni2+-dependent hydrogenase (CytB) VTP55714.1
Alteromonas macleodii MIT1002 1934 K21217 nan TPR repeat (TPR) (PDB:1KLX) VTP55716.1
Alteromonas macleodii MIT1002 1935 5.2974E-5 2.71933E-4 3.84944E-4 4.23791E-5 nan VTP55718.1
Alteromonas macleodii MIT1002 1936 4.50496E-5 6.84753E-5 1.9101E-4 1.6308E-4 K03182 Ubiquinone biosynthesis, prokaryotes, chorismate (+ polyprenyl-PP) => ubiquinol 3-polyprenyl-4-hydroxybenzoate decarboxylase (UbiD) (PDB:2IDB) (PUBMED:28057757) VTP55720.1
Alteromonas macleodii MIT1002 1937 1.44658E-4 3.3246E-4 2.53786E-4 3.42611E-5 K05368 nan NAD(P)H-flavin reductase (Mcr1) (PDB:3A1F) VTP55722.1
Alteromonas macleodii MIT1002 1938 1.09921E-4 1.86307E-6 2.98091E-5 K05994 nan Zn-dependent amino- or carboxypeptidase, M28 family (Iap) (PDB:1AMP) VTP55724.1
Alteromonas macleodii MIT1002 1939 1.03152E-5 2.32091E-5 nan ABC-type amino acid transport/signal transduction system, periplasmic component/domain (HisJ) (PDB:1GGG) VTP55726.1
Alteromonas macleodii MIT1002 1940 1.24747E-4 2.48847E-4 1.71608E-4 2.56927E-5 K11354 nan DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain (OmpR) (PDB:1XHF)!!!Bacteriophytochrome (light-regulated signal transduction histidine kinase) (PDB:2VEA) VTP55728.1
Alteromonas macleodii MIT1002 1941 2.44005E-4 1.18833E-5 nan DNA-binding transcriptional regulator GbsR, MarR family (GbsR) (PDB:1KU9) VTP55730.1
Alteromonas macleodii MIT1002 1942 1.92422E-6 1.92422E-6 K00425 Cytochrome bd ubiquinol oxidase Cytochrome bd-type quinol oxidase, subunit 1 (AppC) (PDB:5DOQ) VTP55732.1
Alteromonas macleodii MIT1002 1943 K00426 Cytochrome bd ubiquinol oxidase Cytochrome bd-type quinol oxidase, subunit 2 (AppB) (PDB:6RKO) VTP55734.1
Alteromonas macleodii MIT1002 1944 6.51383E-5 6.51383E-5 1.62846E-5 nan VTP55736.1
Alteromonas macleodii MIT1002 1945 K03406 nan Methyl-accepting chemotaxis protein (MCP) (Tar) (PDB:1QU7) VTP55738.1
Alteromonas macleodii MIT1002 1946 K05800 nan DNA-binding transcriptional regulator, Lrp family (Lrp) (PDB:1I1G) VTP55740.1
Alteromonas macleodii MIT1002 1947 5.20498E-5 2.67098E-5 1.64368E-5 nan Heat shock protein HslJ (HslJ) (PDB:2KTS) VTP55742.1
Alteromonas macleodii MIT1002 1948 5.56508E-4 0.00388281 0.005526845 0.002019996 K03704 nan Cold shock protein, CspA family (CspC) (PDB:1C9O) VTP55744.1
Alteromonas macleodii MIT1002 1949 5.26755E-4 2.00643E-4 2.30388E-4 1.46832E-4 K03688 nan Predicted protein kinase regulating ubiquinone biosynthesis, AarF/ABC1/UbiB family (AarF) (PDB:4PED) VTP55746.1
Alteromonas macleodii MIT1002 1950 1.34753E-4 5.69575E-5 4.1676E-5 6.66819E-5 K03690 nan Ubiquinone biosynthesis protein UbiJ, contains SCP2 domain (UbiJ) (PUBMED:24142253;28559279) VTP55748.1
Alteromonas macleodii MIT1002 1951 0.00122669 0.001286421 8.94853E-4 0.001619364 K03183 Ubiquinone biosynthesis, prokaryotes, chorismate (+ polyprenyl-PP) => ubiquinol Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG (UbiE) (PDB:4OBW) VTP55750.1
Alteromonas macleodii MIT1002 1952 9.68688E-5 3.01928E-5 3.3967E-5 K01246 nan 3-methyladenine DNA glycosylase Tag (Tag) (PDB:1LMZ) VTP55752.1
Alteromonas macleodii MIT1002 1953 0.001107207 0.001262848 9.77939E-4 0.001487013 K01414 nan Zn-dependent oligopeptidase, M3 family (Dcp) (PDB:5L43) (PUBMED:25239919;31422053) VTP55754.1
Alteromonas macleodii MIT1002 1954 1.89111E-5 4.72778E-6 4.255E-5 nan CheY-like REC (receiver) domain, includes chemotaxis protein CheY  and sporulation regulator Spo0F (CheY) (PDB:6QRJ) VTP55756.1
Alteromonas macleodii MIT1002 1955 K02044 nan ABC-type phosphate/phosphonate transport system, periplasmic component (PhnD) (PDB:3S4U) VTP55758.1
Alteromonas macleodii MIT1002 1956 1.37319E-5 1.98056E-5 1.426E-5 7.05081E-5 K02482 nan Signal transduction histidine kinase regulating C4-dicarboxylate transport system (PDB:4GCZ) VTP55760.1
Alteromonas macleodii MIT1002 1957 2.02153E-6 1.61723E-5 1.01077E-5 2.02153E-6 nan Response regulator c-di-GMP phosphodiesterase, RpfG family, contains REC and HD-GYP domains (RpfG) VTP55762.1
Alteromonas macleodii MIT1002 1958 1.11635E-4 8.74798E-5 1.29261E-4 4.40663E-5 K00383 nan Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex or glutathione oxidoreductase (Lpd) (PDB:6QKG) VTP55764.1
Alteromonas macleodii MIT1002 1959 K08352 nan Anaerobic selenocysteine-containing dehydrogenase (BisC) (PDB:1EU1) VTP55766.1
Alteromonas macleodii MIT1002 1960 0.003885432 6.19507E-5 0.001940013 0.017123964 K02014 nan Outer membrane receptor protein, Fe transport (CirA) (PDB:1BY3) VTP55768.1
Alteromonas macleodii MIT1002 1961 nan PepSY-associated TM region (PiuB) (PUBMED:15124630) VTP55770.1
Alteromonas macleodii MIT1002 1962 2.82305E-4 7.64335E-4 1.49859E-4 0.001463106 K03641 nan Periplasmic component TolB of the Tol biopolymer transport system (TolB) (PDB:1C5K)!!!Imidazolonepropionase or related amidohydrolase (HutI) (PDB:3OOQ) VTP55772.1
Alteromonas macleodii MIT1002 1963 nan VTP55774.1
Alteromonas macleodii MIT1002 1964 0.013209444 0.00125103 0.003779035 0.016133657 nan VTP55776.1
Alteromonas macleodii MIT1002 1965 0.001575077 1.48994E-4 8.55042E-4 0.00150423 nan VTP55778.1
Alteromonas macleodii MIT1002 1966 0.001922617 2.44268E-4 5.52935E-4 0.002502866 K13444 nan Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domain (YfmG) (PDB:2AFT) VTP55780.1
Alteromonas macleodii MIT1002 1967 4.99224E-4 4.69454E-5 4.29379E-5 K03561 nan Biopolymer transport protein ExbB/TolQ (TolQ) (PDB:5SV0) VTP55805.1
Alteromonas macleodii MIT1002 1968 3.59741E-4 6.24551E-6 2.4982E-5 4.22196E-4 nan VTP55807.1
Alteromonas macleodii MIT1002 1969 1.29864E-5 3.47851E-5 1.00181E-4 nan VTP55809.1
Alteromonas macleodii MIT1002 1970 0.001279132 7.90404E-4 9.13014E-4 9.96559E-4 K00021 C5 isoprenoid biosynthesis, mevalonate pathway Hydroxymethylglutaryl-CoA reductase (HMG1) (PDB:1DQ8) VTP55811.1
Alteromonas macleodii MIT1002 1971 K13408 nan Multidrug resistance efflux pump EmrA (EmrA) (PDB:4TKO) VTP55813.1
Alteromonas macleodii MIT1002 1972 K13409 nan ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain (SunT) (PDB:3K8U) VTP55815.1
Alteromonas macleodii MIT1002 1973 K01994 nan Spore transcriptional regulator GerE (stand-alone HTH domain) (GerE) (PDB:1FSE) (PUBMED:3114423;8969504;2474075;11243786) VTP55817.1
Alteromonas macleodii MIT1002 1974 nan VTP55819.1
Alteromonas macleodii MIT1002 1975 nan Glutathione synthase, LysX or RimK-type ligase, ATP-grasp superfamily (LysX) (PDB:1GLV) VTP55821.1
Alteromonas macleodii MIT1002 1976 nan VTP55823.1
Alteromonas macleodii MIT1002 1977 2.39284E-5 5.98209E-6 K07726 nan DNA-binding transcriptional regulator YiaG, XRE-type HTH domain (YiaG) (PDB:5JAA) VTP55825.1
Alteromonas macleodii MIT1002 1978 4.68863E-4 0.002083026 8.58146E-4 3.5115E-4 K03667 nan ATP-dependent protease HslVU (ClpYQ), ATPase subunit HslU (HslU) (PDB:1DO0) VTP55827.1
Alteromonas macleodii MIT1002 1979 4.94644E-5 K01419 nan ATP-dependent protease HslVU (ClpYQ), peptidase subunit (HslV) (PDB:5JI3) VTP55829.1
Alteromonas macleodii MIT1002 1980 nan Cold shock protein, CspA family (CspC) (PDB:1C9O)!!!Uncharacterized membrane protein YsdA, DUF1294 family (YsdA) VTP55831.1
Alteromonas macleodii MIT1002 1981 nan Uncharacterized membrane protein YiaA (YiaA) VTP55417.1
Alteromonas macleodii MIT1002 1982 nan Uncharacterized conserved protein, DUF2145 domain VTP55419.1
Alteromonas macleodii MIT1002 1983 nan VTP55421.1
Alteromonas macleodii MIT1002 1984 nan DNA-binding transcriptional regulator, XRE family (YozG) (PDB:3TYR) VTP55423.1
Alteromonas macleodii MIT1002 1985 K03457 nan Cytosine/uracil/thiamine/allantoin permease (FUI1) (PDB:2JLN) VTP55425.1
Alteromonas macleodii MIT1002 1986 K02014 nan Outer membrane receptor protein, Fe transport (CirA) (PDB:1BY3) VTP55427.1
Alteromonas macleodii MIT1002 1987 K00140 Malonate semialdehyde pathway, propanoyl-CoA => acetyl-CoA Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenase (AdhE) (PDB:1A4S) VTP55429.1
Alteromonas macleodii MIT1002 1988 K09024 nan FMN reductase RutF, DIM6/NTAB family (RutF) (PDB:1EJE) VTP55431.1
Alteromonas macleodii MIT1002 1989 K09019 nan Nitroreductase (NfnB) (PDB:1F5V) VTP55433.1
Alteromonas macleodii MIT1002 1990 K09023 nan 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase MenH and related esterases, alpha/beta hydrolase fold (MenH) (PDB:4MYS) VTP55435.1
Alteromonas macleodii MIT1002 1991 K09021 nan Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family (RidA) (PDB:1J7H) (PUBMED:22094463;32205462) VTP55437.1
Alteromonas macleodii MIT1002 1992 K09020 nan Nicotinamidase-related amidase (PncA) (PDB:1ILW) VTP55439.1
Alteromonas macleodii MIT1002 1993 K09018 nan Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase) (SsuD) (PDB:1BRL) VTP55441.1
Alteromonas macleodii MIT1002 1994 K09017 nan DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA (AcrR) (PDB:2QOP) VTP55443.1
Alteromonas macleodii MIT1002 1995 K10914 nan cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases (Crp) (PDB:1FT9) VTP55445.1
Alteromonas macleodii MIT1002 1996 nan Sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily (ERG3) (PDB:4ZR0) VTP55447.1
Alteromonas macleodii MIT1002 1997 1.00181E-4 nan Uncharacterized conserved protein, DUF2132 family VTP55449.1
Alteromonas macleodii MIT1002 1998 K03299 nan H+/gluconate symporter GntT or related permease, GntP/DsdX family (GntT) VTP55451.1
Alteromonas macleodii MIT1002 1999 K00851 nan Gluconate kinase (GntK) (PDB:1KO4) VTP55453.1
Alteromonas macleodii MIT1002 2000 nan DNA-binding transcriptional regulator, LacI/PurR family (PurR) (PDB:1BDH) VTP55455.1
Alteromonas macleodii MIT1002 2001 1.18833E-5 4.75334E-5 K05555 Type II polyketide backbone biosynthesis, acyl-CoA + malonyl-CoA => polyketide Glyoxylase or a related metal-dependent hydrolase, beta-lactamase superfamily II (GloB) (PDB:1QH3) (PUBMED:25670698) VTP55457.1
Alteromonas macleodii MIT1002 2002 4.2896E-5 nan Uncharacterized conserved protein, DUF1653 family (PDB:3BE3) VTP55459.1
Alteromonas macleodii MIT1002 2003 K02346 nan Nucleotidyltransferase/DNA polymerase DinP involved in DNA repair (DinP) (PDB:4R8U) (PUBMED:16544291) VTP55461.1
Alteromonas macleodii MIT1002 2004 1.09921E-5 K07746 nan Transcriptional regulator, contains Arc/MetJ-type RHH (ribbon-helix-helix) DNA-binding domain (ParD) (PDB:3KXE) VTP55463.1
Alteromonas macleodii MIT1002 2005 K19092 nan Plasmid stabilization system protein ParE (ParE) (PDB:3KXE) VTP55465.1
Alteromonas macleodii MIT1002 2006 1.14204E-5 1.02783E-4 3.42611E-5 K05952 nan Na+-NQR maturation protein NqrM (NqrM) (PUBMED:26644436) VTP55467.1
Alteromonas macleodii MIT1002 2007 0.001744981 5.40686E-4 8.07161E-4 0.001099854 K03734 nan FAD:protein FMN transferase ApbE (ApbE) (PDB:1VRM) (PUBMED:23558683;30154099) VTP55469.1
Alteromonas macleodii MIT1002 2008 0.045878667 0.019918744 0.020073883 0.03794792 K00351 nan Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF (NqrF) (PDB:4P6V) VTP55471.1
Alteromonas macleodii MIT1002 2009 K00350 nan Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrE (NqrE) (PDB:4P6V) VTP55473.1
Alteromonas macleodii MIT1002 2010 1.8704E-4 8.58432E-5 7.11871E-5 1.86343E-4 K00349 nan Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrD (NqrD) (PDB:4P6V) VTP55475.1
Alteromonas macleodii MIT1002 2011 0.009494167 0.00409102 0.004748814 0.016787607 K00348 nan Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrC (NqrC) (PDB:4P6V) VTP55477.1
Alteromonas macleodii MIT1002 2012 3.40755E-4 1.64882E-4 1.50225E-4 1.40699E-4 K00347 nan Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrB (NqrB) (PDB:4P6V) VTP55479.1
Alteromonas macleodii MIT1002 2013 0.040590115 0.022019945 0.018480126 0.059781656 K00346 nan Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrA (NqrA) (PDB:4P6V) VTP55481.1
Alteromonas macleodii MIT1002 2014 0.0014028 0.0047266 0.003750771 0.003168639 K00209 Fatty acid biosynthesis, elongation Trans-2-enoyl-CoA reductase (PDB:3S8M) VTP55483.1
Alteromonas macleodii MIT1002 2015 2.3336E-4 5.25059E-4 7.41344E-4 2.47589E-4 K03773 nan FKBP-type peptidyl-prolyl cis-trans isomerase (FkpA) (PDB:1A7X) VTP55485.1
Alteromonas macleodii MIT1002 2016 0.003615849 0.021791454 0.024777746 0.016932607 K01595 CAM (Crassulacean acid metabolism), dark Phosphoenolpyruvate carboxylase (Ppc) (PDB:1FIY) VTP55487.1
Alteromonas macleodii MIT1002 2017 0.044883437 0.03148154 0.14642406 0.20302252 nan Malate/lactate dehydrogenase (Mdh) (PDB:4WLO) VTP55489.1
Alteromonas macleodii MIT1002 2018 9.32661E-5 2.0747E-4 1.67498E-4 1.17058E-4 K03402 nan Arginine repressor (ArgR) (PDB:1AOY) VTP55491.1
Alteromonas macleodii MIT1002 2019 1.54955E-5 1.54955E-5 nan Protein/nucleotide deglycase, PfpI/YajL/DJ-1 family (repair of methylglyoxal-glycated proteins and nucleic acids) (YajL) (PDB:5SY4) (PUBMED:19028889;28596309;26678554) VTP55493.1
Alteromonas macleodii MIT1002 2020 0.031854093 0.014840778 0.015547994 0.068221636 nan Outer membrane receptor for ferrienterochelin and colicins (FepA) (PDB:2HDF) (PUBMED:16468998) VTP55495.1
Alteromonas macleodii MIT1002 2021 2.02628E-4 7.37724E-5 6.04934E-5 5.01652E-5 nan ABC-type phosphate/phosphonate transport system, periplasmic component (PhnD) (PDB:3S4U) VTP55497.1
Alteromonas macleodii MIT1002 2022 3.23637E-4 1.31304E-4 1.05413E-4 3.06531E-4 nan VTP55499.1
Alteromonas macleodii MIT1002 2023 3.68173E-5 3.01619E-4 1.91167E-4 K00876 nan Uridine kinase (Udk) (PDB:5B3F) VTP55501.1
Alteromonas macleodii MIT1002 2024 K03317 nan Nucleoside permease NupC (NupC) (PDB:3TIJ) VTP55503.1
Alteromonas macleodii MIT1002 2025 4.03438E-4 0.008861964 8.34191E-4 2.30085E-4 nan Isopenicillin N synthase and related dioxygenases (PcbC) (PDB:1BK0) VTP55505.1
Alteromonas macleodii MIT1002 2026 nan Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains (BepA) (PDB:6AIT) (PUBMED:24003122) VTP55507.1
Alteromonas macleodii MIT1002 2027 nan Uncaracterized surface protein containing fasciclin (FAS1) repeats (FAS1) VTP55509.1
Alteromonas macleodii MIT1002 2028 nan VTP55511.1
Alteromonas macleodii MIT1002 2029 K02488 nan Two-component response regulator, PleD family, consists of two REC domains and a diguanylate cyclase (GGDEF) domain (PleD) (PDB:1W25) VTP55513.1
Alteromonas macleodii MIT1002 2030 3.84003E-6 K09951 nan DNA polymerase III, epsilon subunit or related 3'-5' exonuclease (DnaQ) (PDB:1J53) VTP55515.1
Alteromonas macleodii MIT1002 2031 1.51134E-4 4.66878E-5 2.21887E-4 2.63522E-4 K07182 nan Signal-transduction protein containing cAMP-binding, CBS, and nucleotidyltransferase domains VTP55517.1
Alteromonas macleodii MIT1002 2032 0.003378133 0.001364981 8.43243E-4 0.008964748 K14393 nan Na+(or H+)/acetate symporter ActP (ActP) VTP55519.1
Alteromonas macleodii MIT1002 2033 9.99281E-6 nan Uncharacterized membrane protein, DUF4212 domain VTP55521.1
Alteromonas macleodii MIT1002 2034 2.24889E-5 1.91667E-5 3.06667E-6 7.39834E-5 K20975 nan Na+/proline symporter (PutP) (PDB:5NVA)!!!Signal transduction histidine kinase (BaeS) (PDB:1JOY)!!!CheY-like REC (receiver) domain, includes chemotaxis protein CheY  and sporulation regulator Spo0F (CheY) (PDB:6QRJ) VTP55523.1
Alteromonas macleodii MIT1002 2035 1.17532E-4 6.79704E-5 3.82334E-5 5.52261E-5 nan Small-conductance mechanosensitive channel (MscS) (PDB:2OAU) VTP55525.1
Alteromonas macleodii MIT1002 2036 1.43153E-4 5.20024E-4 1.48996E-4 1.16859E-4 K05844 nan Glutathione synthase, LysX or RimK-type ligase, ATP-grasp superfamily (LysX) (PDB:1GLV) VTP55527.1
Alteromonas macleodii MIT1002 2037 3.26451E-4 7.72544E-4 3.45252E-4 1.44852E-4 K06987 nan Predicted deacylase (PDB:3CDX) VTP55529.1
Alteromonas macleodii MIT1002 2038 3.05336E-5 8.34585E-5 2.22895E-4 nan Uncharacterized conserved protein VTP55531.1
Alteromonas macleodii MIT1002 2039 2.58375E-5 6.68213E-6 1.96009E-5 4.54384E-5 nan ABC-type amino acid transport/signal transduction system, periplasmic component/domain (HisJ) (PDB:1GGG) VTP55534.1
Alteromonas macleodii MIT1002 2040 3.01341E-5 5.6159E-5 nan DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains (CitB) (PDB:1A04) VTP55536.1
Alteromonas macleodii MIT1002 2041 0.019672226 0.010857292 0.02294226 0.10012439 K01895 Methanogenesis, acetate => methane Acyl-coenzyme A synthetase/AMP-(fatty) acid ligase (Acs) (PDB:4B2O) (PUBMED:14638756) VTP55538.1
Alteromonas macleodii MIT1002 2042 0.011890016 0.010036604 0.004633153 0.20396324 nan VTP55540.1
Alteromonas macleodii MIT1002 2043 K14683 nan Na+/phosphate symporter (NptA) VTP55542.1
Alteromonas macleodii MIT1002 2044 1.58286E-4 6.1137E-4 3.68497E-4 1.25624E-4 nan Pyridoxal reductase PdxI or related oxidoreductase, aldo/keto reductase family (PdxI) (PDB:1LQA) (PUBMED:32253339) VTP55544.1
Alteromonas macleodii MIT1002 2045 nan Methyl-accepting chemotaxis protein (MCP) (Tar) (PDB:1QU7) VTP55546.1
Alteromonas macleodii MIT1002 2046 1.81203E-5 2.66475E-6 K17734 nan Serine protease, subtilisin family (AprE) (PDB:1SCJ) VTP55548.1
Alteromonas macleodii MIT1002 2047 nan VTP55550.1
Alteromonas macleodii MIT1002 2048 nan Forkhead associated (FHA) domain, binds pSer, pThr, pTyr (FHA) (PDB:2FEZ)!!!GAF domain (GAF) VTP55552.1
Alteromonas macleodii MIT1002 2049 3.06497E-5 1.89471E-5 7.24447E-6 2.42411E-5 nan Serine/threonine protein kinase (SPS1) (PDB:6G4J)!!!Type IV pilus assembly protein PilF/PilW (PilF) (PDB:2VQ2) (PUBMED:16403447) VTP55554.1
Alteromonas macleodii MIT1002 2050 nan Signal transduction histidine kinase ComP (ComP) (PDB:4GT8) VTP55556.1
Alteromonas macleodii MIT1002 2051 nan DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains (CitB) (PDB:1A04) VTP55558.1
Alteromonas macleodii MIT1002 2052 2.15796E-5 K17734 nan Serine protease, subtilisin family (AprE) (PDB:1SCJ) VTP55560.1
Alteromonas macleodii MIT1002 2053 nan VTP55562.1
Alteromonas macleodii MIT1002 2054 K06867 nan Ankyrin repeat (ANKYR) (PDB:6AUN) VTP55564.1
Alteromonas macleodii MIT1002 2055 K03781 Photorespiration Catalase (KatE) (PDB:6RJR) VTP55566.1
Alteromonas macleodii MIT1002 2056 nan VTP55568.1
Alteromonas macleodii MIT1002 2057 7.8166E-6 4.00601E-5 2.99636E-5 K07093 nan Secreted phosphatase, PhoX family (PhoX) (PDB:3ZWU) VTP55570.1
Alteromonas macleodii MIT1002 2058 nan Translation elongation factor EF-Tu, a GTPase (TufA) (PDB:1EFU) VTP55964.1
Alteromonas macleodii MIT1002 2059 6.2812E-6 6.2812E-6 3.92575E-6 1.5703E-6 K09456 nan Acyl-CoA dehydrogenase related to the alkylation response protein AidB (CaiA) (PDB:1BUC) VTP54378.1
Alteromonas macleodii MIT1002 2060 K02616 nan DNA-binding transcriptional regulator PaaX (phenylacetic acid degradation) (PaaX) VTP54376.1
Alteromonas macleodii MIT1002 2061 3.96111E-5 3.01045E-5 nan VTP54374.1
Alteromonas macleodii MIT1002 2062 7.88594E-4 4.16045E-5 3.68767E-5 nan VTP54372.1
Alteromonas macleodii MIT1002 2063 1.96726E-6 nan Xaa-Pro aminopeptidase (PepP) (PDB:1A16) VTP54370.1
Alteromonas macleodii MIT1002 2064 nan Lactoylglutathione lyase-related enzyme, vicinal oxygen chelate (VOC) family (VOC) (PDB:3OXH) (PUBMED:31710815) VTP54368.1
Alteromonas macleodii MIT1002 2065 K13639 nan DNA-binding transcriptional regulator, MerR family (SoxR) (PDB:2VZ4) VTP54366.1
Alteromonas macleodii MIT1002 2066 K06970 nan 23S rRNA A1618 N6-methylase RlmF (RlmF) (PDB:2H00) (PUBMED:18021804) VTP54364.1
Alteromonas macleodii MIT1002 2067 nan VTP54362.1
Alteromonas macleodii MIT1002 2068 nan Choline-glycine betaine transporter (BetT) (PDB:2WIT) VTP54360.1
Alteromonas macleodii MIT1002 2069 K00108 Betaine biosynthesis, choline => betaine Choline dehydrogenase or related flavoprotein (BetA) (PDB:1B4V) VTP54358.1
Alteromonas macleodii MIT1002 2070 1.32145E-5 K00130 Betaine biosynthesis, choline => betaine Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenase (AdhE) (PDB:1A4S) VTP54356.1
Alteromonas macleodii MIT1002 2071 2.95165E-4 2.10395E-4 1.58307E-4 2.77292E-4 K09914 nan Heat shock protein HslJ (HslJ) (PDB:2KTS)!!!Membrane-bound inhibitor of C-type lysozyme (MliC) (PDB:2F09) VTP54354.1
Alteromonas macleodii MIT1002 2072 nan 2-hydroxy fatty acid dioxygenase MPO1 (alpha-oxidation of fatty acids) (MPO1) (PUBMED:30530523) VTP54352.1
Alteromonas macleodii MIT1002 2073 0.001007104 1.33115E-4 5.71455E-4 4.07413E-4 K07517 nan Enoyl-CoA hydratase/carnithine racemase (CaiD) (PDB:1DCI) VTP54350.1
Alteromonas macleodii MIT1002 2074 nan VTP54348.1
Alteromonas macleodii MIT1002 2075 nan VTP54346.1
Alteromonas macleodii MIT1002 2076 4.50724E-4 7.49043E-4 4.54621E-4 6.03347E-4 K01585 Polyamine biosynthesis, arginine => agmatine => putrescine => spermidine Arginine/lysine/ornithine decarboxylase (LdcC) (PDB:1C4K) VTP54344.1
Alteromonas macleodii MIT1002 2077 nan VTP54342.1
Alteromonas macleodii MIT1002 2078 nan VTP54340.1
Alteromonas macleodii MIT1002 2079 3.38218E-6 K03437 nan tRNA G18 (ribose-2'-O)-methylase SpoU (SpoU) (PDB:1GZ0) VTP54338.1
Alteromonas macleodii MIT1002 2080 1.71134E-5 1.05313E-5 K14540 nan Ribosome biogenesis GTPase RbgA (RbgA) (PDB:6G14) VTP54336.1
Alteromonas macleodii MIT1002 2081 K21574 nan Enterochelin esterase or related enzyme (Fes) (PDB:2B20) VTP54334.1
Alteromonas macleodii MIT1002 2082 5.362E-6 nan Mannose-6-phosphate isomerase, cupin superfamily (ManC) (PDB:1IPJ) VTP54332.1
Alteromonas macleodii MIT1002 2083 nan VTP54330.1
Alteromonas macleodii MIT1002 2084 1.82601E-4 5.28581E-5 1.49307E-4 K19882 nan VTP54328.1
Alteromonas macleodii MIT1002 2085 1.09395E-4 0.001085535 3.28185E-4 2.6928E-4 K00761 nan Uracil phosphoribosyltransferase (Upp) (PDB:2EHJ) VTP54326.1
Alteromonas macleodii MIT1002 2086 4.8997E-5 3.09455E-5 6.447E-6 K02529 nan DNA-binding transcriptional regulator, LacI/PurR family (PurR) (PDB:1BDH) VTP54324.1
Alteromonas macleodii MIT1002 2087 K22694 nan Dehydrogenase (flavoprotein) (FixC) (PDB:4OPU) VTP54322.1
Alteromonas macleodii MIT1002 2088 5.05613E-4 2.0461E-5 3.06157E-5 9.75761E-4 K02014 nan Outer membrane receptor for ferrienterochelin and colicins (FepA) (PDB:2HDF) (PUBMED:16468998) VTP54320.1
Alteromonas macleodii MIT1002 2089 4.58004E-6 K00857 nan Thymidine kinase (Tdk) (PDB:1W4R) VTP54318.1
Alteromonas macleodii MIT1002 2090 9.59624E-6 1.30858E-6 1.02723E-4 K21023 nan Cyclic di-GMP metabolism protein, combines GGDEF and EAL domains with a 6TM membrane domain VTP54316.1
Alteromonas macleodii MIT1002 2091 8.3849E-6 3.14434E-6 1.04811E-6 5.24057E-6 K02014 nan Outer membrane receptor for ferrienterochelin and colicins (FepA) (PDB:2HDF) (PUBMED:16468998) VTP54314.1
Alteromonas macleodii MIT1002 2092 nan VTP54312.1
Alteromonas macleodii MIT1002 2093 2.74338E-4 4.87233E-4 1.19754E-4 3.80394E-4 K06445 beta-Oxidation Acyl-CoA dehydrogenase related to the alkylation response protein AidB (CaiA) (PDB:1BUC) VTP54310.1
Alteromonas macleodii MIT1002 2094 1.43375E-4 1.91167E-5 4.30125E-5 nan VTP54308.1
Alteromonas macleodii MIT1002 2095 nan VTP54306.1
Alteromonas macleodii MIT1002 2096 3.21398E-4 4.71258E-5 1.41377E-5 7.06888E-6 K02517 KDO2-lipid A biosynthesis, Raetz pathway, LpxL-LpxM type Palmitoleoyl-ACP: Kdo2-lipid-IV acyltransferase (lipid A biosynthesis) (LpxP) (PDB:5F2T) (PUBMED:11830595) VTP54302.1
Alteromonas macleodii MIT1002 2097 2.1448E-5 4.2896E-6 nan VTP54299.1
Alteromonas macleodii MIT1002 2098 7.20055E-6 4.08031E-5 9.06068E-5 1.53012E-5 K00982 nan Glutamine synthetase adenylyltransferase (GlnE1) (PDB:1V4A) VTP54297.1
Alteromonas macleodii MIT1002 2099 7.3037E-6 1.16859E-5 K08989 nan VTP54295.1
Alteromonas macleodii MIT1002 2100 K07461 nan Predicted endonuclease, GIY-YIG superfamily (YhbQ) (PDB:1YWL) VTP54293.1
Alteromonas macleodii MIT1002 2101 5.38219E-5 1.73058E-4 6.70704E-5 1.61466E-5 K02450 nan Type II secretory pathway ATPase component GspA/ExeA/MshM (ExeA) (PUBMED:21378198) VTP54291.1
Alteromonas macleodii MIT1002 2102 0.001152528 2.81566E-4 2.95749E-4 6.55585E-4 nan VTP54289.1
Alteromonas macleodii MIT1002 2103 1.13168E-4 6.66019E-4 5.17602E-4 1.80882E-5 K00903 nan Fe-S cluster carrier ATPase, Mrp/ApbC/NBP35 family (Mrp) (PDB:2PH1) (PUBMED:18616280;19114487;31709520) VTP54287.1
Alteromonas macleodii MIT1002 2104 0.004327206 0.00250951 0.002708856 0.003736469 nan Exopolysaccharide export protein/domain GumC/Wzc1 (GumC) (PUBMED:15003255;23089617) VTP54285.1
Alteromonas macleodii MIT1002 2105 0.002423145 0.002527832 0.002251459 0.012547735 K01991 nan Periplasmic protein Wza involved in polysaccharide export, contains SLBB domain of the beta-grasp fold (Wza) (PDB:2J58) (PUBMED:17250770) VTP54283.1
Alteromonas macleodii MIT1002 2106 0.001247953 4.11619E-5 1.35335E-4 3.74199E-4 nan NDP-sugar epimerase, includes UDP-GlcNAc-inverting 4,6-dehydratase FlaA1 and capsular polysaccharide biosynthesis protein EpsC (FlaA1) (PDB:2GN4)!!!Sugar transferase involved in LPS biosynthesis (colanic, teichoic acid) (WcaJ) (PDB:5W7L) VTP54281.1
Alteromonas macleodii MIT1002 2107 7.12319E-4 2.63705E-4 5.2741E-4 3.18337E-4 K22278 nan Peptidoglycan/xylan/chitin deacetylase, PgdA/NodB/CDA1 family (CDA1) (PDB:1NY1) VTP54279.1
Alteromonas macleodii MIT1002 2108 1.69293E-4 2.69194E-5 7.17851E-6 6.46066E-5 nan VTP54277.1
Alteromonas macleodii MIT1002 2109 2.99277E-4 1.70026E-4 1.0694E-4 2.07725E-5 K13668 nan Glycosyltransferase involved in cell wall bisynthesis (RfaB) (PDB:2IV7) VTP54275.1
Alteromonas macleodii MIT1002 2110 nan Membrane protein involved in the export of O-antigen and teichoic acid (RfbX) VTP54273.1
Alteromonas macleodii MIT1002 2111 nan VTP54271.1
Alteromonas macleodii MIT1002 2112 2.77889E-4 3.73904E-5 7.66272E-5 9.00141E-6 nan VTP54269.1
Alteromonas macleodii MIT1002 2113 1.04047E-4 3.18854E-4 4.90029E-4 1.02369E-4 nan Tetratricopeptide (TPR) repeat (TPR) (PDB:3AS4) VTP54267.1
Alteromonas macleodii MIT1002 2114 nan VTP54265.1
Alteromonas macleodii MIT1002 2115 K18814 nan O-antigen ligase (RfaL) VTP54261.1
Alteromonas macleodii MIT1002 2116 4.38693E-4 1.85182E-4 8.91251E-5 4.30771E-5 K01021 nan Glycosyltransferase involved in cell wall bisynthesis (WcaA) (PDB:5MLZ) VTP54259.1
Alteromonas macleodii MIT1002 2117 7.0774E-6 nan Membrane protein involved in the export of O-antigen and teichoic acid (RfbX) VTP54257.1
Alteromonas macleodii MIT1002 2118 2.44467E-4 2.44467E-4 2.10051E-4 2.59894E-4 nan VTP54255.1
Alteromonas macleodii MIT1002 2119 1.41059E-4 5.96249E-4 1.82076E-4 1.2005E-5 K16563 nan VTP54253.1
Alteromonas macleodii MIT1002 2120 1.04011E-4 6.447E-6 1.46132E-5 nan VTP54251.1
Alteromonas macleodii MIT1002 2121 2.38959E-6 2.38959E-6 2.38959E-6 2.38959E-6 nan Glycosyltransferase involved in cell wall bisynthesis (RfaB) (PDB:2IV7) VTP54249.1
Alteromonas macleodii MIT1002 2122 3.14887E-5 3.70455E-6 2.63949E-5 2.36165E-5 K01953 nan Asparagine synthetase B (glutamine-hydrolyzing) (AsnB) (PDB:2ETD) (PUBMED:25951518) VTP54247.1
Alteromonas macleodii MIT1002 2123 nan Acetyltransferase involved in cellulose biosynthesis, CelD/BcsL family (BcsL) VTP54245.1
Alteromonas macleodii MIT1002 2124 7.80503E-6 nan Peptidoglycan/xylan/chitin deacetylase, PgdA/NodB/CDA1 family (CDA1) (PDB:1NY1) VTP54243.1
Alteromonas macleodii MIT1002 2125 1.35043E-5 2.38311E-6 5.95778E-6 2.38311E-6 nan Glycosyltransferase involved in cell wall bisynthesis (RfaB) (PDB:2IV7) VTP54241.1
Alteromonas macleodii MIT1002 2126 nan VTP58099.1
Alteromonas macleodii MIT1002 2127 nan VTP58098.1
Alteromonas macleodii MIT1002 2128 nan VTP58097.1
Alteromonas macleodii MIT1002 2129 nan VTP58096.1
Alteromonas macleodii MIT1002 2130 nan Site-specific recombinase XerD (XerD) (PDB:1A0P) VTP58095.1
Alteromonas macleodii MIT1002 2131 nan VTP58094.1
Alteromonas macleodii MIT1002 2132 nan VTP58093.1
Alteromonas macleodii MIT1002 2133 nan VTP58092.1
Alteromonas macleodii MIT1002 2134 2.03557E-6 1.01779E-5 nan VTP58091.1
Alteromonas macleodii MIT1002 2135 nan VTP58090.1
Alteromonas macleodii MIT1002 2136 nan VTP58089.1
Alteromonas macleodii MIT1002 2137 nan VTP58088.1
Alteromonas macleodii MIT1002 2138 5.08305E-6 nan VTP58087.1
Alteromonas macleodii MIT1002 2139 nan Site-specific recombinase XerD (XerD) (PDB:1A0P) VTP58086.1
Alteromonas macleodii MIT1002 2140 nan VTP58085.1
Alteromonas macleodii MIT1002 2141 nan VTP58084.1
Alteromonas macleodii MIT1002 2142 nan VTP58083.1
Alteromonas macleodii MIT1002 2143 nan VTP58082.1
Alteromonas macleodii MIT1002 2144 K10748 nan VTP58081.1
Alteromonas macleodii MIT1002 2145 nan Transposase InsO and inactivated derivatives (Tra5) VTP58080.1
Alteromonas macleodii MIT1002 2146 nan VTP58079.1
Alteromonas macleodii MIT1002 2147 nan VTP58077.1
Alteromonas macleodii MIT1002 2148 nan VTP58075.1
Alteromonas macleodii MIT1002 2149 6.46594E-6 K15773 nan VTP58074.1
Alteromonas macleodii MIT1002 2150 K07154 nan Serine/threonine protein kinase HipA, toxin component of the HipAB toxin-antitoxin module (HipA) (PDB:2WIU) VTP58073.1
Alteromonas macleodii MIT1002 2151 nan VTP58072.1
Alteromonas macleodii MIT1002 2152 nan VTP58070.1
Alteromonas macleodii MIT1002 2153 nan VTP58069.1
Alteromonas macleodii MIT1002 2154 nan VTP58068.1
Alteromonas macleodii MIT1002 2155 1.54425E-4 3.86064E-5 6.4344E-5 6.86335E-5 nan VTP58067.1
Alteromonas macleodii MIT1002 2156 nan Protein-tyrosine phosphatase (CDC14) (PDB:1D5R) VTP58066.1
Alteromonas macleodii MIT1002 2157 nan Type II secretory pathway ATPase component GspA/ExeA/MshM (ExeA) (PUBMED:21378198) VTP58065.1
Alteromonas macleodii MIT1002 2158 nan Type II secretory pathway ATPase component GspA/ExeA/MshM (ExeA) (PUBMED:21378198) VTP58064.1
Alteromonas macleodii MIT1002 2159 nan Nucleoside-diphosphate-sugar epimerase (WcaG) (PDB:2X4G) VTP58063.1
Alteromonas macleodii MIT1002 2160 K22747 nan NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase, or a related oxidoreductase (FadH2) (PDB:1VRQ)!!!Ferredoxin subunit of nitrite reductase or a ring-hydroxylating dioxygenase (NirD) (PDB:1FQT) (PUBMED:23844911) VTP58062.1
Alteromonas macleodii MIT1002 2161 K02351 nan Cytochrome c oxidase assembly protein CtaG (CtaG) (PUBMED:14766920) VTP58061.1
Alteromonas macleodii MIT1002 2162 nan VTP58060.1
Alteromonas macleodii MIT1002 2163 K15408 Cytochrome c oxidase, prokaryotes Heme/copper-type cytochrome/quinol oxidase, subunit 1 (CyoB) (PDB:1AR1) VTP58059.1
Alteromonas macleodii MIT1002 2164 K02275 Cytochrome c oxidase, prokaryotes Heme/copper-type cytochrome/quinol oxidase, subunit 2 (CyoA) (PDB:1CYW) VTP58058.1
Alteromonas macleodii MIT1002 2165 nan Uncharacterized membrane protein VTP58057.1
Alteromonas macleodii MIT1002 2166 K08973 Heme biosynthesis, plants and bacteria, glutamate => heme Protoporphyrinogen oxidase HemJ (unrelated to HemG or HemY) (HemJ) (PUBMED:20823222;21642412;25108393;29925590) VTP58056.1
Alteromonas macleodii MIT1002 2167 9.64219E-7 nan Transposase and inactivated derivatives, TnpA family VTP58055.1
Alteromonas macleodii MIT1002 2168 nan VTP58054.1
Alteromonas macleodii MIT1002 2169 K14060 nan Site-specific DNA recombinase SpoIVCA/DNA invertase PinE (SpoIVCA) (PDB:1GDT) VTP58053.1
Alteromonas macleodii MIT1002 2170 4.57164E-5 3.22704E-5 2.09757E-4 nan VTP58051.1
Alteromonas macleodii MIT1002 2171 K07482 nan Transposase and inactivated derivatives, IS30 family (Tra8) VTP58050.1
Alteromonas macleodii MIT1002 2172 nan Transposase and inactivated derivatives, IS5 family (IS5) VTP58049.1
Alteromonas macleodii MIT1002 2173 K07481 nan Transposase and inactivated derivatives, IS5 family (IS5) VTP58048.1
Alteromonas macleodii MIT1002 2174 nan VTP58047.1
Alteromonas macleodii MIT1002 2175 nan VTP58046.1
Alteromonas macleodii MIT1002 2176 nan VTP58045.1
Alteromonas macleodii MIT1002 2177 nan VTP58044.1
Alteromonas macleodii MIT1002 2178 1.0982E-4 1.51002E-4 1.81688E-4 8.721E-5 K03497 nan VTP58042.1
Alteromonas macleodii MIT1002 2179 3.0835E-4 4.34925E-4 5.08206E-4 1.67023E-4 K03496 nan ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ (ParA) (PDB:6NOO) VTP58041.1
Alteromonas macleodii MIT1002 2180 7.22273E-6 7.22273E-6 2.76871E-5 nan VTP58140.1
Alteromonas macleodii MIT1002 2181 nan VTP58139.1
Alteromonas macleodii MIT1002 2182 nan VTP58138.1
Alteromonas macleodii MIT1002 2183 nan
Alteromonas macleodii MIT1002 2184 nan VTP58137.1
Alteromonas macleodii MIT1002 2185 nan N-acyl-homoserine lactone synthase LasI (autoinducer biosynthesis) (LasI) (PDB:1K4J) VTP58136.1
Alteromonas macleodii MIT1002 2186 nan VTP58135.1
Alteromonas macleodii MIT1002 2187 3.4485E-6 nan VTP58134.1
Alteromonas macleodii MIT1002 2188 2.35354E-4 3.63729E-5 5.77687E-5 2.37493E-4 nan VTP58133.1
Alteromonas macleodii MIT1002 2189 2.69745E-6 9.89064E-5 3.41676E-5 4.31591E-5 nan DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain (OmpR) (PDB:1XHF) VTP58132.1
Alteromonas macleodii MIT1002 2190 nan VTP58131.1
Alteromonas macleodii MIT1002 2191 nan Signal transduction histidine kinase (BaeS) (PDB:1JOY)!!!CheY-like REC (receiver) domain, includes chemotaxis protein CheY  and sporulation regulator Spo0F (CheY) (PDB:6QRJ)!!!PAS domain (PAS) (PDB:2MWG) VTP58130.1
Alteromonas macleodii MIT1002 2192 K03412 nan Chemotaxis response regulator CheB, contains REC and protein-glutamate methylesterase domains (CheB) (PDB:1A2O) VTP58129.1
Alteromonas macleodii MIT1002 2193 1.93126E-5 7.30017E-4 7.29587E-5 1.05576E-4 K03413 nan Chemotaxis protein histidine kinase CheA (CheA) (PDB:1B3Q)!!!CheY-like REC (receiver) domain, includes chemotaxis protein CheY  and sporulation regulator Spo0F (CheY) (PDB:6QRJ) VTP58128.1
Alteromonas macleodii MIT1002 2194 5.30269E-4 0.00225951 4.28549E-4 0.001376833 K03406 nan Methyl-accepting chemotaxis protein (MCP) (Tar) (PDB:1QU7)!!!Signal transduction histidine kinase NarQ, nitrate/nitrite-specific (NarQ) VTP58127.1
Alteromonas macleodii MIT1002 2195 1.22817E-5 nan VTP58126.1
Alteromonas macleodii MIT1002 2196 nan VTP58125.1
Alteromonas macleodii MIT1002 2197 2.40923E-6 K00575 nan Methylase of chemotaxis methyl-accepting proteins (CheR) (PDB:1AF7) VTP58124.1
Alteromonas macleodii MIT1002 2198 2.057E-5 nan VTP58123.1
Alteromonas macleodii MIT1002 2199 1.28048E-4 4.82109E-4 2.66896E-4 1.30748E-4 K21023 nan DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain (OmpR) (PDB:1XHF)!!!EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant) (EAL) (PDB:2BAS) VTP58122.1
Alteromonas macleodii MIT1002 2200 1.68382E-5 7.90709E-4 9.82802E-5 1.07215E-4 K13587 nan DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain (OmpR) (PDB:1XHF)!!!DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains (AtoC) (PDB:1ZY2)!!!K+-sensing histidine kinase KdpD (KdpD) (PDB:2KSF) VTP58121.1
Alteromonas macleodii MIT1002 2201 1.669E-4 1.78266E-4 5.4437E-5 5.39286E-4 K13587 nan Signal transduction histidine kinase (BaeS) (PDB:1JOY)!!!CheY-like REC (receiver) domain, includes chemotaxis protein CheY  and sporulation regulator Spo0F (CheY) (PDB:6QRJ)!!!PAS domain (PAS) (PDB:2MWG) VTP58120.1
Alteromonas macleodii MIT1002 2202 nan VTP58119.1
Alteromonas macleodii MIT1002 2203 nan VTP58118.1
Alteromonas macleodii MIT1002 2204 nan VTP55644.1
Alteromonas macleodii MIT1002 2205 K04065 nan Osmotically-inducible protein OsmY, contains BON domain (OsmY) (PUBMED:12878000) VTP53421.1
Alteromonas macleodii MIT1002 2206 nan Uracil-DNA glycosylase (Udg4) (PDB:3IKB) VTP53419.1
Alteromonas macleodii MIT1002 2207 nan Predicted DNA modification or repair protein, contains radical SAM and helix-hairpin-helix domains VTP53417.1
Alteromonas macleodii MIT1002 2208 nan VTP53415.1
Alteromonas macleodii MIT1002 2209 5.42706E-4 0.013752839 0.009746015 0.005771078 K00873 Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate Pyruvate kinase (PykF) (PDB:6QXL) VTP53411.1
Alteromonas macleodii MIT1002 2210 2.68782E-4 0.001329927 6.05925E-4 3.18499E-4 K19337 nan DNA-binding transcriptional regulator, MurR/RpiR family, contains HTH and SIS domains (RpiR) (PDB:2O3F) VTP53409.1
Alteromonas macleodii MIT1002 2211 0.001536976 0.01771238 0.009215958 0.006590832 K00036 Pentose phosphate pathway (Pentose phosphate cycle) Glucose-6-phosphate 1-dehydrogenase (Zwf) (PDB:5B7W) (PUBMED:18950999) VTP53407.1
Alteromonas macleodii MIT1002 2212 1.89892E-4 0.003451198 0.002805055 0.003012789 K01057 Pentose phosphate pathway (Pentose phosphate cycle) 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase (NagB) (PDB:2RI0) (PUBMED:24163345) VTP53405.1
Alteromonas macleodii MIT1002 2213 6.80256E-4 0.009062208 0.007216694 0.003769854 K01690 Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate Dihydroxyacid dehydratase/phosphogluconate dehydratase (IlvD) (PDB:2GP4) VTP53403.1
Alteromonas macleodii MIT1002 2214 5.64053E-5 9.1543E-4 0.001233519 3.23175E-4 nan Glucokinase (Glk) (PDB:1Q18) VTP53401.1
Alteromonas macleodii MIT1002 2215 2.47921E-4 0.008204689 0.005836424 0.004815975 K01625 Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate 2-keto-3-deoxy-6-phosphogluconate aldolase (Eda) (PDB:2V81) VTP53399.1
Alteromonas macleodii MIT1002 2216 1.42936E-4 1.08756E-4 2.23726E-4 3.1073E-5 K01792 nan D-hexose-6-phosphate mutarotase (YeaD) (PDB:1JOV) VTP53397.1
Alteromonas macleodii MIT1002 2217 2.92237E-5 0.012583898 0.003885865 0.003342128 K00134 Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase (GapA) (PDB:3ZDF) VTP53395.1
Alteromonas macleodii MIT1002 2218 7.39803E-5 0.001710347 9.76142E-4 1.08571E-4 K00705 Glycogen degradation, glycogen => glucose-6P 4-alpha-glucanotransferase (MalQ) (PDB:1CWY) VTP53393.1
Alteromonas macleodii MIT1002 2219 5.56285E-4 7.39284E-4 4.41708E-4 1.60934E-4 K00700 Glycogen biosynthesis, glucose-1P => glycogen/starch 1,4-alpha-glucan branching enzyme (GlgB) (PDB:4LPC) (PUBMED:25871919) VTP53391.1
Alteromonas macleodii MIT1002 2220 5.90463E-6 1.4382E-4 3.96454E-5 1.13875E-5 nan Pullulanase/glycogen debranching enzyme (PulA) (PDB:2WSK) VTP53389.1
Alteromonas macleodii MIT1002 2221 2.23385E-4 7.31389E-4 0.001014306 2.4493E-4 K00033 Pentose phosphate pathway (Pentose phosphate cycle) 6-phosphogluconate dehydrogenase (Gnd) (PDB:2ZYA) (PUBMED:25329577) VTP53387.1
Alteromonas macleodii MIT1002 2222 6.19273E-6 K07305 nan Peptide methionine sulfoxide reductase MsrB (MsrB) (PDB:1L1D) VTP53385.1
Alteromonas macleodii MIT1002 2223 2.99105E-6 2.99105E-6 nan VTP53383.1
Alteromonas macleodii MIT1002 2224 0.010780325 9.32995E-4 0.001290714 0.004717687 K00134 Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase (GapA) (PDB:3ZDF) VTP53381.1
Alteromonas macleodii MIT1002 2225 5.08904E-4 2.17328E-4 1.98766E-4 4.57086E-4 nan Murein tripeptide amidase MpaA (MpaA) (PDB:1ARL) VTP53379.1
Alteromonas macleodii MIT1002 2226 1.29038E-4 1.15231E-4 2.65509E-5 7.80598E-5 K03310 nan Na+/alanine symporter (AlsT) (PDB:6CSE) VTP53377.1
Alteromonas macleodii MIT1002 2227 6.51385E-5 7.32806E-5 7.87089E-5 1.66917E-4 nan VTP53375.1
Alteromonas macleodii MIT1002 2228 K09916 nan Uncharacterized conserved protein YeaC, DUF1315 family (yeaC) VTP53373.1
Alteromonas macleodii MIT1002 2229 1.79463E-5 5.97312E-4 1.99203E-4 7.62716E-6 nan VTP53371.1
Alteromonas macleodii MIT1002 2230 nan VTP53369.1
Alteromonas macleodii MIT1002 2231 nan VTP53367.1
Alteromonas macleodii MIT1002 2232 nan Uncharacterized membrane protein YtjA, UPF0391 family (YtjA) VTP53365.1
Alteromonas macleodii MIT1002 2233 4.79406E-5 1.65737E-4 4.10919E-6 1.64368E-5 nan Uncharacterized conserved protein VTP53363.1
Alteromonas macleodii MIT1002 2234 4.61057E-4 3.14496E-4 1.86255E-4 3.70983E-4 nan VTP53361.1
Alteromonas macleodii MIT1002 2235 nan VTP53359.1
Alteromonas macleodii MIT1002 2236 nan VTP53357.1
Alteromonas macleodii MIT1002 2237 nan VTP53355.1
Alteromonas macleodii MIT1002 2238 1.22486E-5 1.2671E-6 nan Signal transduction histidine kinase (BaeS) (PDB:1JOY)!!!DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain (OmpR) (PDB:1XHF)!!!CheY-like REC (receiver) domain, includes chemotaxis protein CheY  and sporulation regulator Spo0F (CheY) (PDB:6QRJ) VTP53353.1
Alteromonas macleodii MIT1002 2239 7.03494E-5 2.4036E-4 2.85306E-4 K11355 nan CheY-like REC (receiver) domain, includes chemotaxis protein CheY  and sporulation regulator Spo0F (CheY) (PDB:6QRJ) VTP53351.1
Alteromonas macleodii MIT1002 2240 2.5939E-4 1.4249E-4 3.83851E-5 9.858E-5 nan Bacteriophytochrome (light-regulated signal transduction histidine kinase) (PDB:2VEA)!!!Extracytoplasmic sensor domain CHASE3 (specificity unknown) (CHASE3) (PDB:3VA9) VTP53349.1
Alteromonas macleodii MIT1002 2241 1.18833E-5 nan VTP53347.1
Alteromonas macleodii MIT1002 2242 3.97006E-6 1.50862E-4 9.39579E-5 7.24537E-5 nan DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains (AtoC) (PDB:1ZY2) VTP53345.1
Alteromonas macleodii MIT1002 2243 nan Exopolysaccharide synthesis protein ExoD (ExoD) (PUBMED:1987158) VTP53343.1
Alteromonas macleodii MIT1002 2244 4.6785E-5 nan DNA-binding transcriptional regulator, LysR family (LysR) (PDB:2FYI) VTP53341.1
Alteromonas macleodii MIT1002 2245 2.08271E-4 1.38847E-4 5.91388E-4 1.2342E-4 K03972 nan Rhodanese-related sulfurtransferase (PspE) (PDB:1TQ1) VTP53339.1
Alteromonas macleodii MIT1002 2246 K22042 nan DNA-binding transcriptional regulator, ArsR family (ArsR) (PDB:3F6V) VTP53337.1
Alteromonas macleodii MIT1002 2247 3.5316E-6 1.69517E-4 8.829E-6 3.5316E-6 nan VTP53335.1
Alteromonas macleodii MIT1002 2248 1.86307E-4 0.001371217 5.91213E-4 6.70704E-5 K09897 nan Uncharacterized conserved protein YifE, UPF0438 family (YifE) VTP53333.1
Alteromonas macleodii MIT1002 2249 nan VTP53331.1
Alteromonas macleodii MIT1002 2250 1.11514E-4 1.16824E-4 1.16824E-4 1.3541E-4 K23773 nan DNA-binding transcriptional regulator, LysR family (LysR) (PDB:2FYI) VTP53329.1
Alteromonas macleodii MIT1002 2251 nan VTP53327.1
Alteromonas macleodii MIT1002 2252 nan VTP53325.1
Alteromonas macleodii MIT1002 2253 9.51695E-6 4.75848E-6 1.90339E-6 7.61357E-6 K12574 nan mRNA degradation ribonuclease J1/J2 (RnjA) (PDB:3T3N) VTP53323.1
Alteromonas macleodii MIT1002 2254 5.18763E-5 6.17877E-5 1.98227E-5 3.09993E-5 K21023 nan PAS domain (PAS) (PDB:2MWG)!!!Periplasmic ligand-binding sensor domain (PDB:4A2L)!!!Cyclic di-GMP metabolism protein, combines GGDEF and EAL domains with a 6TM membrane domain VTP53321.1
Alteromonas macleodii MIT1002 2255 nan
Alteromonas macleodii MIT1002 2256 0.002448805 4.39421E-4 6.17183E-4 0.004367735 K01897 beta-Oxidation, acyl-CoA synthesis Long-chain acyl-CoA synthetase (AMP-forming) (FAA1) VTP53319.1
Alteromonas macleodii MIT1002 2257 1.64797E-4 2.44494E-4 7.63199E-4 1.45886E-4 nan Dimeric dUTPase, all-alpha-NTP-PPase (MazG) superfamily (Dut2) VTP53317.1
Alteromonas macleodii MIT1002 2258 2.67137E-6 1.4814E-5 9.10696E-6 4.73562E-6 K03583 nan Scaffold subunit RecC of the DNA repair enzyme RecBCD (exonuclease V) (RecC) (PDB:1W36) (PUBMED:30601118) VTP53315.1
Alteromonas macleodii MIT1002 2259 1.07322E-5 5.32137E-5 4.04692E-5 2.04582E-5 K03582 nan 3-5 helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V) (RecB) (PDB:3U44) (PUBMED:29901759;30601118) VTP53313.1
Alteromonas macleodii MIT1002 2260 8.39777E-6 1.35964E-5 1.5196E-5 4.79873E-6 K03581 nan ATPase/5-3 helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V) (RecD) (PDB:1W36) (PUBMED:29901759;30601118) VTP53311.1
Alteromonas macleodii MIT1002 2261 8.90222E-5 nan VTP53309.1
Alteromonas macleodii MIT1002 2262 nan Lactoylglutathione lyase-related enzyme, vicinal oxygen chelate (VOC) family (VOC) (PDB:3OXH) (PUBMED:31710815) VTP53307.1
Alteromonas macleodii MIT1002 2263 nan VTP53305.1
Alteromonas macleodii MIT1002 2264 nan 3-methyladenine DNA glycosylase Mpg (Mpg) (PDB:1BNK)
Alteromonas macleodii MIT1002 2265 nan VTP53301.1
Alteromonas macleodii MIT1002 2266 nan Transposase InsO and inactivated derivatives (Tra5) VTP56524.1
Alteromonas macleodii MIT1002 2267 nan VTP52360.1
Alteromonas macleodii MIT1002 2268 1.94982E-6 K00262 nan Glutamate dehydrogenase/leucine dehydrogenase (GdhA) (PDB:1B3B) (PUBMED:24391520) VTP52362.1
Alteromonas macleodii MIT1002 2269 1.62245E-6 1.62245E-6 1.05459E-5 K07029 nan Phosphatidylglycerol kinase, diacylglycerol kinase family (LCB5) (PDB:2BON) (PUBMED:17351295)!!!Protein-tyrosine phosphatase (CDC14) (PDB:1D5R) VTP52364.1
Alteromonas macleodii MIT1002 2270 nan VTP52366.1
Alteromonas macleodii MIT1002 2271 2.44269E-5 nan NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family (FabG) (PDB:6L1H) VTP52368.1
Alteromonas macleodii MIT1002 2272 1.27445E-5 K21064 Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD Hydroxymethylpyrimidine pyrophosphatase and other HAD family phosphatases (Cof) (PDB:1YMQ) VTP52370.1
Alteromonas macleodii MIT1002 2273 nan VTP52372.1
Alteromonas macleodii MIT1002 2274 nan DNA topoisomerase IB (Top1) (PDB:1A31) VTP52374.1
Alteromonas macleodii MIT1002 2275 K11928 nan Na+/proline symporter (PutP) (PDB:5NVA) VTP52376.1
Alteromonas macleodii MIT1002 2276 2.1448E-5 9.53244E-6 K00931 Proline biosynthesis, glutamate => proline Glutamate 5-kinase (ProB) (PDB:2W21) VTP52378.1
Alteromonas macleodii MIT1002 2277 1.32435E-4 6.39925E-4 0.001024163 1.19721E-4 K00147 Proline biosynthesis, glutamate => proline Gamma-glutamyl phosphate reductase (ProA) (PDB:4GHK) VTP52380.1
Alteromonas macleodii MIT1002 2278 1.95724E-4 1.1224E-4 6.49322E-5 5.70475E-5 nan Small-conductance mechanosensitive channel (MscS) (PDB:2OAU) VTP52382.1
Alteromonas macleodii MIT1002 2279 K07451 nan 5-methylcytosine-specific restriction endonuclease McrA (McrA) VTP52384.1
Alteromonas macleodii MIT1002 2280 0.023118313 0.03123276 0.018942049 0.03471437 K00962 nan Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) (Pnp) (PDB:1E3P) VTP52386.1
Alteromonas macleodii MIT1002 2281 9.06564E-6 1.72247E-4 5.74157E-5 K09948 nan Uncharacterized conserved protein, DUF1244 family (PDB:2O35) VTP52388.1
Alteromonas macleodii MIT1002 2282 nan VTP52390.1
Alteromonas macleodii MIT1002 2283 nan VTP52392.1
Alteromonas macleodii MIT1002 2284 3.20937E-6 1.28375E-5 nan VTP52394.1
Alteromonas macleodii MIT1002 2285 1.45281E-4 2.51522E-4 2.85123E-4 1.88162E-4 K07053 nan 5'-3' exoribonuclease TrpH/YciV (RNase AM), contains PHP domain (YciV) (PDB:3E0F) (PUBMED:25871919)!!!Chromosome segregation ATPase Smc (Smc) (PDB:5XG3) VTP52396.1
Alteromonas macleodii MIT1002 2286 4.91267E-6 4.91267E-6 nan VTP52398.1
Alteromonas macleodii MIT1002 2287 3.17844E-5 1.41264E-5 3.17844E-5 nan VTP52400.1
Alteromonas macleodii MIT1002 2288 K07497 nan Transposase InsO and inactivated derivatives (Tra5) VTP52402.1
Alteromonas macleodii MIT1002 2289 2.20297E-4 2.47607E-4 2.18476E-5 4.91572E-5 nan VTP52404.1
Alteromonas macleodii MIT1002 2290 nan VTP52406.1
Alteromonas macleodii MIT1002 2291 1.39582E-5 4.65274E-6 nan VTP52408.1
Alteromonas macleodii MIT1002 2292 0.001247716 7.88577E-4 8.56021E-4 6.35531E-4 nan Endonuclease NucS, RecB family (NucS) (PDB:2VLD) VTP52410.1
Alteromonas macleodii MIT1002 2293 1.3405E-5 5.362E-6 nan Adenylate kinase or related kinase (Adk) (PDB:1AK2) VTP52412.1
Alteromonas macleodii MIT1002 2294 nan VTP52414.1
Alteromonas macleodii MIT1002 2295 1.15706E-5 nan VTP52416.1
Alteromonas macleodii MIT1002 2296 6.40938E-6 K01286 nan CubicO group peptidase, beta-lactamase class C family (AmpC) (PDB:1BLS) VTP52418.1
Alteromonas macleodii MIT1002 2297 nan VTP52422.1
Alteromonas macleodii MIT1002 2298 nan VTP52424.1
Alteromonas macleodii MIT1002 2299 nan Uncharacterized conserved protein VTP52426.1
Alteromonas macleodii MIT1002 2300 nan VTP52428.1
Alteromonas macleodii MIT1002 2301 nan VTP52430.1
Alteromonas macleodii MIT1002 2302 1.94335E-5 4.69643E-5 4.85838E-6 2.42919E-5 nan VTP52432.1
Alteromonas macleodii MIT1002 2303 nan VTP52434.1
Alteromonas macleodii MIT1002 2304 2.52692E-6 3.0323E-5 1.43192E-5 2.27423E-5 K06987 nan Predicted deacylase (PDB:3CDX) VTP52436.1
Alteromonas macleodii MIT1002 2305 1.51615E-5 nan VTP52438.1
Alteromonas macleodii MIT1002 2306 K03832 nan Periplasmic protein TonB, links inner and outer membranes (TonB) (PDB:1IHR) VTP52440.1
Alteromonas macleodii MIT1002 2307 K03088 nan DNA-directed RNA polymerase specialized sigma subunit, sigma24 family (RpoE) (PDB:2Q1Z) VTP52442.1
Alteromonas macleodii MIT1002 2308 nan VTP52444.1
Alteromonas macleodii MIT1002 2309 3.03979E-5 K01489 nan Cytidine deaminase (Cdd) (PDB:1AF2) VTP52446.1
Alteromonas macleodii MIT1002 2310 6.02855E-4 3.71288E-5 9.47762E-5 2.34498E-4 K05803 nan Lipoprotein NlpI, contains TPR repeats (NlpI) (PDB:5WQL) VTP52448.1
Alteromonas macleodii MIT1002 2311 2.64551E-5 6.34922E-6 1.58731E-5 nan VTP52450.1
Alteromonas macleodii MIT1002 2312 K06203 nan Sulfate transporter CysZ (CysZ) (PDB:3TX3) (PUBMED:24657232) VTP52452.1
Alteromonas macleodii MIT1002 2313 7.48398E-7 6.41127E-5 4.24092E-6 1.87099E-6 K03529 nan Chromosome segregation ATPase Smc (Smc) (PDB:5XG3) VTP52454.1
Alteromonas macleodii MIT1002 2314 5.63912E-5 0.001522003 2.22215E-4 3.91947E-4 K03528 nan Cell division protein ZipA, interacts with FtsZ (ZipA) (PDB:1F46) VTP52456.1
Alteromonas macleodii MIT1002 2315 4.2801E-5 3.32465E-4 4.53951E-4 4.79891E-5 K01972 nan NAD-dependent DNA ligase (Lig) (PDB:5TT5) VTP52458.1
Alteromonas macleodii MIT1002 2316 K09928 nan Uncharacterized conserved protein, DUF2062 family VTP52460.1
Alteromonas macleodii MIT1002 2317 K02238 nan DNA uptake channel protein ComEC, N-terminal domain (ComEC)!!!DNA uptake channel protein ComEC C-terminal domain, metallo-beta-lactamase superfamily (ComEC) VTP52462.1
Alteromonas macleodii MIT1002 2318 5.26815E-4 1.31955E-4 2.99166E-4 3.88312E-4 K11085 nan ABC-type multidrug transport system, ATPase and permease component (MdlB) (PDB:2HYD) VTP52464.1
Alteromonas macleodii MIT1002 2319 2.30738E-5 2.30738E-5 2.56375E-6 4.10201E-5 K00912 KDO2-lipid A biosynthesis, Raetz pathway, LpxL-LpxM type Tetraacyldisaccharide-1-P 4'-kinase (Lipid A 4'-kinase) (LpxK) (PDB:4EHW) VTP52466.1
Alteromonas macleodii MIT1002 2320 1.87782E-4 3.70983E-4 5.63345E-4 5.49605E-5 K09791 nan RNA methyltransferase activator Trm112/YbaR (Trm112) (PDB:2KPI) (PUBMED:27986851;30010922) VTP52468.1
Alteromonas macleodii MIT1002 2321 1.64808E-5 3.17844E-5 1.05948E-5 5.65055E-5 K00979 CMP-KDO biosynthesis CMP-2-keto-3-deoxyoctulosonic acid synthetase (KdsB) (PDB:1VH1) VTP52470.1
Alteromonas macleodii MIT1002 2322 8.69998E-5 5.21999E-4 0.001275551 4.89876E-4 nan NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family (FabG) (PDB:6L1H) VTP52472.1
Alteromonas macleodii MIT1002 2323 K02030 nan ABC-type amino acid transport/signal transduction system, periplasmic component/domain (HisJ) (PDB:1GGG) VTP52474.1
Alteromonas macleodii MIT1002 2324 4.66331E-5 1.63519E-4 7.87312E-4 4.08797E-5 K14441 nan tRNA A37 methylthiotransferase MiaB (MiaB) (PDB:4JC0) (PUBMED:17407324;20472640;20584901) VTP52476.1
Alteromonas macleodii MIT1002 2325 nan VTP52478.1
Alteromonas macleodii MIT1002 2326 2.99541E-5 2.5675E-5 2.5675E-5 5.77687E-5 nan VTP52480.1
Alteromonas macleodii MIT1002 2327 1.36336E-5 K22132 nan tRNA A37 threonylcarbamoyladenosine dehydratase (TcdA) (PDB:4D7A) (PUBMED:27913733) VTP52482.1
Alteromonas macleodii MIT1002 2328 K07393 nan Glutathionyl-hydroquinone reductase (ECM4) (PDB:6GCA) VTP52484.1
Alteromonas macleodii MIT1002 2329 3.064E-6 K06911 nan Redox-sensitive bicupin YhaK, pirin superfamily (YhaK) (PDB:1J1L) (PUBMED:18561187) VTP52486.1
Alteromonas macleodii MIT1002 2330 nan Protein N-acetyltransferase, RimJ/RimL family (RimL) (PDB:1S7F) VTP52488.1
Alteromonas macleodii MIT1002 2331 8.2991E-4 0.001423393 0.002394437 6.19719E-4 K01840 nan Phosphomannomutase (ManB) (PDB:6MNV) VTP52490.1
Alteromonas macleodii MIT1002 2332 3.74199E-5 3.83554E-4 1.55916E-4 9.35497E-6 K09913 nan Pyrimidine/purine nucleoside phosphorylase YaiE/PpnP, UPF0345/DUF1255 family (PpnP) (PDB:2OYZ) (PUBMED:27941785) VTP51090.1
Alteromonas macleodii MIT1002 2333 nan Cyclopropane fatty-acyl-phospholipid synthase and related methyltransferases (Cfa) (PDB:5Z9O) VTP51089.1
Alteromonas macleodii MIT1002 2334 6.21795E-4 0.003123398 0.002520048 3.08383E-4 K00548 Methionine biosynthesis, apartate => homoserine => methionine Methionine synthase I, cobalamin-binding domain (MetH2) (PDB:4DJD) VTP51088.1
Alteromonas macleodii MIT1002 2335 5.13584E-4 0.001270748 0.001556439 7.55513E-5 K00548 Methionine biosynthesis, apartate => homoserine => methionine Methionine synthase I (cobalamin-dependent), methyltransferase domain (MetH1) (PDB:1LT7) VTP51087.1
Alteromonas macleodii MIT1002 2336 5.54302E-5 6.10672E-4 3.61706E-4 3.52311E-5 K00651 Methionine biosynthesis, apartate => homoserine => methionine Homoserine O-succinyltransferase (MetA) (PDB:2GHR) VTP51086.1
Alteromonas macleodii MIT1002 2337 nan VTP51085.1
Alteromonas macleodii MIT1002 2338 0.002326997 0.002540994 0.001462016 0.003652342 K03408 nan Chemotaxis signal transduction protein CheW (CheW) (PDB:2QDL) VTP51084.1
Alteromonas macleodii MIT1002 2339 K03408 nan Chemotaxis signal transduction protein CheW (CheW) (PDB:2QDL) VTP51083.1
Alteromonas macleodii MIT1002 2340 1.73104E-5 2.18111E-4 2.76966E-5 2.25035E-5 K03496 nan ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ (ParA) (PDB:6NOO) VTP51082.1
Alteromonas macleodii MIT1002 2341 2.26079E-5 2.10487E-5 K03412 nan Chemotaxis response regulator CheB, contains REC and protein-glutamate methylesterase domains (CheB) (PDB:1A2O) VTP51081.1
Alteromonas macleodii MIT1002 2342 0.001289503 0.00142385 0.001312748 0.002137548 K03407 nan Chemotaxis protein histidine kinase CheA (CheA) (PDB:1B3Q) VTP51080.1
Alteromonas macleodii MIT1002 2343 7.82437E-5 4.91652E-4 1.43641E-4 4.71215E-4 K03414 nan Phosphoaspartate phosphatase CheZ, dephosphorylates CheY~P (CheZ) (PDB:1KMI) VTP51079.1
Alteromonas macleodii MIT1002 2344 1.14389E-4 3.78915E-4 4.57557E-4 6.4344E-5 K03413 nan CheY-like REC (receiver) domain, includes chemotaxis protein CheY  and sporulation regulator Spo0F (CheY) (PDB:6QRJ) VTP51078.1
Alteromonas macleodii MIT1002 2345 1.44752E-5 9.28825E-5 1.73702E-4 9.40889E-5 K02405 nan DNA-directed RNA polymerase specialized sigma subunit (FliA) (PDB:1RP3) VTP51077.1
Alteromonas macleodii MIT1002 2346 3.86759E-5 1.27223E-4 3.30781E-4 6.90059E-4 K04562 nan MinD-like ATPase FlhG/YlxH, activator of the FlhF-type GTPase (FlhG) (PDB:1G3Q) VTP51076.1
Alteromonas macleodii MIT1002 2347 K02404 nan Flagellar biosynthesis GTPase FlhF (FlhF) (PDB:3SYN) VTP51075.1
Alteromonas macleodii MIT1002 2348 5.87083E-6 4.10958E-5 5.03215E-6 1.25804E-6 K02400 nan Flagellar biosynthesis protein FlhA (FlhA) (PDB:6AI0) VTP51074.1
Alteromonas macleodii MIT1002 2349 K02401 nan Flagellar biosynthesis protein FlhB (FlhB) (PDB:6S3L) VTP51072.1
Alteromonas macleodii MIT1002 2350 K02421 nan Flagellar biosynthesis protein FliR (FliR) (PDB:6S3R) VTP51071.1
Alteromonas macleodii MIT1002 2351 K02420 nan Flagellar biosynthesis protein FliQ (FliQ) (PDB:6F2D) VTP51070.1
Alteromonas macleodii MIT1002 2352 1.40138E-5 3.50346E-6 1.40138E-5 1.71669E-4 K02419 nan Flagellar biosynthesis protein FliP (FliP) (PDB:5H72) VTP51069.1
Alteromonas macleodii MIT1002 2353 2.34498E-5 3.81059E-5 3.81059E-5 1.52424E-4 K02418 nan Flagellar biogenesis protein FliO (FliO) VTP51068.1
Alteromonas macleodii MIT1002 2354 3.03979E-5 1.33534E-4 K02417 nan Flagellar motor switch/type III secretory pathway protein FliN (FliN) (PDB:1O9Y) VTP51067.1
Alteromonas macleodii MIT1002 2355 9.99281E-6 1.24077E-4 6.41205E-5 9.99281E-6 K02416 nan Flagellar motor switch protein FliM (FliM) (PDB:2HP7) VTP51066.1
Alteromonas macleodii MIT1002 2356 1.22817E-4 1.44105E-4 1.49837E-4 K02415 nan Flagellar basal body-associated protein FliL (FliL) VTP51065.1
Alteromonas macleodii MIT1002 2357 1.16337E-4 4.56222E-6 7.41361E-6 K02414 nan Flagellar hook-length control protein FliK (FliK) (PDB:2RRL) VTP51064.1
Alteromonas macleodii MIT1002 2358 K02413 nan Flagellar biosynthesis chaperone FliJ (FliJ) (PDB:3AJW) VTP51063.1
Alteromonas macleodii MIT1002 2359 1.98056E-6 2.24463E-5 1.98056E-6 K02412 nan Flagellar biosynthesis/type III secretory pathway ATPase FliI (FliI) (PDB:5B0O) VTP51062.1
Alteromonas macleodii MIT1002 2360 K02411 nan Flagellar biosynthesis/type III secretory pathway protein FliH (FliH) (PDB:5B0O) VTP51061.1
Alteromonas macleodii MIT1002 2361 1.18604E-5 6.52325E-5 4.8289E-5 2.54153E-5 K02410 nan Flagellar motor switch protein FliG (FliG) (PDB:4FHR) VTP51060.1
Alteromonas macleodii MIT1002 2362 8.52342E-5 7.74384E-5 1.76705E-5 4.05382E-5 K02409 nan Flagellar biosynthesis/type III secretory pathway M-ring protein FliF/YscJ (FliF) (PDB:6SCN) VTP51059.1
Alteromonas macleodii MIT1002 2363 K02408 nan Flagellar hook-basal body complex protein FliE (FliE) VTP51058.1
Alteromonas macleodii MIT1002 2364 1.97611E-6 4.61092E-5 1.91024E-5 4.94027E-6 K10943 nan DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains (AtoC) (PDB:1ZY2) VTP51057.1
Alteromonas macleodii MIT1002 2365 9.2565E-6 K10942 nan Signal transduction histidine kinase (BaeS) (PDB:1JOY) VTP51056.1
Alteromonas macleodii MIT1002 2366 4.51421E-6 2.04644E-5 9.57011E-5 K10941 nan DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains (AtoC) (PDB:1ZY2) VTP51055.1
Alteromonas macleodii MIT1002 2367 3.30589E-6 1.32236E-5 2.31413E-5 K02406 nan Flagellin and related hook-associated protein FlgL (FlgL) (PDB:1IO1) VTP51054.1
Alteromonas macleodii MIT1002 2368 6.42236E-5 5.46723E-4 2.17372E-4 4.01397E-4 K15894 UDP-L-FucNAm biosynthesis NDP-sugar epimerase, includes UDP-GlcNAc-inverting 4,6-dehydratase FlaA1 and capsular polysaccharide biosynthesis protein EpsC (FlaA1) (PDB:2GN4) VTP51053.1
Alteromonas macleodii MIT1002 2369 8.10138E-6 1.20784E-4 8.98517E-5 nan dTDP-4-amino-4,6-dideoxygalactose transaminase (WecE) (PDB:4PIW) (PUBMED:15271350) VTP51052.1
Alteromonas macleodii MIT1002 2370 3.47119E-5 6.42813E-5 8.99936E-5 1.54275E-5 K15899 nan CMP-N-acetylneuraminic acid synthetase, NeuA/PseF family (NeuA) (PDB:1EYR) VTP51051.1
Alteromonas macleodii MIT1002 2371 1.01661E-5 K15897 nan Spore coat polysaccharide biosynthesis protein SpsG, predicted glycosyltransferase (SpsG) VTP51050.1
Alteromonas macleodii MIT1002 2372 4.24815E-6 3.68173E-5 1.69926E-5 nan Trans-aconitate methyltransferase (Tam) (PDB:2P35) VTP51049.1
Alteromonas macleodii MIT1002 2373 1.49045E-5 nan VTP51048.1
Alteromonas macleodii MIT1002 2374 4.16414E-5 2.29436E-4 2.8904E-4 9.79796E-6 K15898 nan Sialic acid synthase SpsE, contains C-terminal SAF domain (SpsE) (PDB:1VLI) VTP51047.1
Alteromonas macleodii MIT1002 2375 3.4084E-6 1.36336E-5 nan VTP51046.1
Alteromonas macleodii MIT1002 2376 K07483 nan Transposase InsE and inactivated derivatives (InsE) (PDB:2JN6) (PUBMED:23818957) VTP51045.1
Alteromonas macleodii MIT1002 2377 K07482 nan Transposase and inactivated derivatives, IS30 family (Tra8) VTP51044.1
Alteromonas macleodii MIT1002 2378 K07497 nan Transposase InsO and inactivated derivatives (Tra5)!!!Transposase InsE and inactivated derivatives (InsE) (PDB:2JN6) (PUBMED:23818957) VTP51041.1
Alteromonas macleodii MIT1002 2379 nan VTP51040.1
Alteromonas macleodii MIT1002 2380 6.14374E-5 2.15401E-4 1.57664E-4 4.55228E-5 nan VTP51038.1
Alteromonas macleodii MIT1002 2381 2.24902E-6 4.27314E-5 8.99609E-6 nan tRNA(Ile)-lysidine synthase TilS/MesJ (TilS) (PDB:1NI5) (PUBMED:21435031) VTP51037.1
Alteromonas macleodii MIT1002 2382 3.36779E-5 3.36779E-5 5.11405E-5 3.74199E-6 nan Imidazole glycerol phosphate synthase subunit HisF (HisF) (PDB:1OX4) VTP51036.1
Alteromonas macleodii MIT1002 2383 4.12648E-5 nan Imidazoleglycerol phosphate synthase glutamine amidotransferase subunit HisH (HisH) (PDB:1OX4) VTP51035.1
Alteromonas macleodii MIT1002 2384 9.2565E-6 9.2565E-6 2.31412E-6 nan tRNA(Ile)-lysidine synthase TilS/MesJ (TilS) (PDB:1NI5) (PUBMED:21435031) VTP51034.1
Alteromonas macleodii MIT1002 2385 4.99641E-6 2.37329E-5 1.41565E-5 8.11916E-6 nan Uncharacterized conserved protein (PDB:5MU5) VTP51033.1
Alteromonas macleodii MIT1002 2386 nan VTP51032.1
Alteromonas macleodii MIT1002 2387 2.47709E-5 6.19273E-6 K02422 nan Flagellin-specific chaperone FliS (FliS) (PDB:1ORJ) VTP51031.1
Alteromonas macleodii MIT1002 2388 7.46809E-6 K02407 nan Flagellar capping protein FliD (FliD) (PDB:5FHY) VTP51030.1
Alteromonas macleodii MIT1002 2389 K06603 nan VTP51029.1
Alteromonas macleodii MIT1002 2390 K02406 nan Flagellin and related hook-associated protein FlgL (FlgL) (PDB:1IO1) VTP51028.1
Alteromonas macleodii MIT1002 2391 nan Transposase and inactivated derivatives, TnpA family VTP52844.1
Alteromonas macleodii MIT1002 2392 nan
Alteromonas macleodii MIT1002 2393 nan Site-specific recombinase XerD (XerD) (PDB:1A0P) VTP52846.1
Alteromonas macleodii MIT1002 2394 3.0323E-5 3.79038E-5 4.92749E-5 nan VTP52848.1
Alteromonas macleodii MIT1002 2395 nan Diacylglycerol kinase (DgkA) (PDB:2KDC) VTP52850.1
Alteromonas macleodii MIT1002 2396 0.00155983 5.65308E-5 2.51248E-5 K06149 nan Nucleotide-binding universal stress protein,  UspA family (UspA) (PDB:1JMV) VTP52852.1
Alteromonas macleodii MIT1002 2397 8.1629E-5 0.005012765 2.52308E-4 2.22625E-5 nan VTP52854.1
Alteromonas macleodii MIT1002 2398 8.74511E-5 5.93802E-5 1.1876E-5 3.3199E-5 K22083 nan Glutamate synthase domain 2 (GltB2) (PDB:1EA0) VTP52856.1
Alteromonas macleodii MIT1002 2399 1.0929E-5 1.68139E-6 K03455 nan Predicted Kef-type K+ transport protein, K+/H+ antiporter domain (RosB) VTP52858.1
Alteromonas macleodii MIT1002 2400 0.003489642 0.007400414 0.005582313 0.014606959 K03594 nan Bacterioferritin (cytochrome b1) (Bfr) (PDB:4E6K) VTP52860.1
Alteromonas macleodii MIT1002 2401 0.004207726 0.004928239 0.007004681 0.012813234 K03594 nan Bacterioferritin (cytochrome b1) (Bfr) (PDB:4E6K) VTP52862.1
Alteromonas macleodii MIT1002 2402 2.21224E-5 5.53061E-6 nan VTP52864.1
Alteromonas macleodii MIT1002 2403 4.60884E-5 6.63673E-5 K00404 Cytochrome c oxidase, cbb3-type Cbb3-type cytochrome oxidase, subunit 1 (CcoN) (PDB:3MK7) VTP52866.1
Alteromonas macleodii MIT1002 2404 0.004049756 0.0028831 0.002689143 0.007056814 K00405 Cytochrome c oxidase, cbb3-type Cbb3-type cytochrome oxidase, cytochrome c subunit FixO (CcoO) (PDB:3MK7) VTP52868.1
Alteromonas macleodii MIT1002 2405 0.002753687 0.002504024 0.001790174 0.001012521 K00406 Cytochrome c oxidase, cbb3-type Cytochrome c, mono- and diheme variants (CccA) (PDB:1A2S) VTP52872.1
Alteromonas macleodii MIT1002 2406 1.64075E-4 2.98653E-4 2.21224E-5 8.84898E-5 K09926 nan Uncharacterized conserved protein VTP52874.1
Alteromonas macleodii MIT1002 2407 9.33969E-6 9.4834E-5 6.46594E-6 1.07766E-6 K01533 nan Cation-transporting P-type ATPase (ZntA) (PDB:4BBJ) VTP52876.1
Alteromonas macleodii MIT1002 2408 nan Cytochrome oxidase maturation protein, CcoS/FixS family (FixS) VTP52878.1
Alteromonas macleodii MIT1002 2409 K09792 nan Uncharacterized membrane protein, DsbD domain (DsbD) (PUBMED:17768248) VTP52880.1
Alteromonas macleodii MIT1002 2410 1.29213E-4 1.4357E-5 2.08176E-4 3.58925E-6 K01420 nan cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases (Crp) (PDB:1FT9) VTP52882.1
Alteromonas macleodii MIT1002 2411 1.14576E-5 1.1935E-4 1.86186E-5 4.58302E-5 K14055 nan Nucleotide-binding universal stress protein,  UspA family (UspA) (PDB:1JMV) VTP52884.1
Alteromonas macleodii MIT1002 2412 1.10961E-5 1.10961E-5 3.32884E-5 K14058 nan tRNA(Ile)-lysidine synthase TilS/MesJ (TilS) (PDB:1NI5) (PUBMED:21435031) VTP52886.1
Alteromonas macleodii MIT1002 2413 1.29319E-5 5.25896E-5 1.04317E-4 1.03455E-5 K07001 nan Predicted acylesterase/phospholipase RssA, containd patatin domain (RssA) (PDB:5FQU) VTP52888.1
Alteromonas macleodii MIT1002 2414 9.27085E-5 1.63603E-5 nan VTP52890.1
Alteromonas macleodii MIT1002 2415 1.33744E-5 3.3436E-6 K03796 nan Uncharacterized FlgJ-related protein (Bax) VTP52892.1
Alteromonas macleodii MIT1002 2416 nan Uncharacterized membrane protein VTP52894.1
Alteromonas macleodii MIT1002 2417 4.22773E-6 K05835 nan Threonine/homoserine/homoserine lactone efflux protein (RhtB) VTP52896.1
Alteromonas macleodii MIT1002 2418 K12410 nan NAD-dependent protein deacetylase, SIR2 family (SIR2) (PDB:1M2N) VTP52898.1
Alteromonas macleodii MIT1002 2419 3.50473E-5 1.58244E-4 2.1878E-4 3.18611E-5 K01011 nan 3-mercaptopyruvate sulfurtransferase SseA, contains two rhodanese domains (SseA) (PDB:1BOH) VTP52900.1
Alteromonas macleodii MIT1002 2420 0.002199307 0.006185772 0.008393961 0.010046106 K11065 nan Peroxiredoxin (Tpx) (PDB:4AF2) VTP52902.1
Alteromonas macleodii MIT1002 2421 K05812 nan tRNA U47 aminocarboxypropyltransferaseTapT/TuaA/ YfiP, DTW domain (TapT) (PUBMED:31804502;31863583) VTP52904.1
Alteromonas macleodii MIT1002 2422 1.15706E-5 K00995 nan Phosphatidylglycerophosphate synthase (PgsA) (PDB:4MND) VTP52906.1
Alteromonas macleodii MIT1002 2423 1.30815E-5 1.4535E-6 K03703 nan Excinuclease UvrABC, nuclease subunit (UvrC) (PDB:2NRT) (PUBMED:24513124) VTP52908.1
Alteromonas macleodii MIT1002 2424 4.10919E-6 2.42442E-4 6.84866E-5 1.64368E-5 K07689 nan DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains (CitB) (PDB:1A04) VTP52910.1
Alteromonas macleodii MIT1002 2425 K06911 nan Redox-sensitive bicupin YhaK, pirin superfamily (YhaK) (PDB:1J1L) (PUBMED:18561187) VTP52912.1
Alteromonas macleodii MIT1002 2426 1.80568E-6 1.80568E-6 K14155 Methionine biosynthesis, apartate => homoserine => methionine Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities (MalY) (PDB:4DGT) VTP52914.1
Alteromonas macleodii MIT1002 2427 nan Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domain (YfmG) (PDB:2AFT)!!!Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG (UbiE) (PDB:4OBW) VTP52916.1
Alteromonas macleodii MIT1002 2428 nan Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domain (YfmG) (PDB:2AFT)!!!Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG (UbiE) (PDB:4OBW) VTP52918.1
Alteromonas macleodii MIT1002 2429 nan VTP52920.1
Alteromonas macleodii MIT1002 2430 2.97084E-6 K15777 nan Aromatic ring-opening dioxygenase, catalytic subunit, LigB family (LigB) (PDB:2PW6) (PUBMED:23258706) VTP52922.1
Alteromonas macleodii MIT1002 2431 K15977 nan Uncharacterized membrane protein YphA, DoxX/SURF4 family (DoxX) VTP52924.1
Alteromonas macleodii MIT1002 2432 nan DNA-binding transcriptional regulator, LysR family (LysR) (PDB:2FYI) VTP52926.1
Alteromonas macleodii MIT1002 2433 5.02152E-4 2.25248E-5 3.42377E-5 nan VTP52928.1
Alteromonas macleodii MIT1002 2434 2.48027E-4 3.22302E-4 9.01914E-5 3.12355E-4 K19416 nan Integral membrane protein YbhL, putative Ca2+ regulator, Bax inhibitor (BI-1)/TMBIM family (YbhL) (PDB:4PGR) (PUBMED:28064000) VTP52930.1
Alteromonas macleodii MIT1002 2435 K07235 nan Sulfur relay (sulfurtransferase) complex TusBCD TusD component, DsrE family (DsrE) (PDB:1JX7) VTP52932.1
Alteromonas macleodii MIT1002 2436 K07236 nan Sulfur transfer complex TusBCD TusC component, DsrF family (DsrF) (PDB:2D1P) VTP52934.1
Alteromonas macleodii MIT1002 2437 nan VTP52936.1
Alteromonas macleodii MIT1002 2438 K11179 nan Sulfur transfer complex TusBCD TusE component, DsrC family (tRNA 2-thiouridine synthesizing protein C) (TusE) (PDB:1JI8) VTP52938.1
Alteromonas macleodii MIT1002 2439 nan Protein required for attachment to host cells VTP52940.1
Alteromonas macleodii MIT1002 2440 nan ssDNA abasic site-binding protein YedK/HMCES, SRAP family (SRAP) (PDB:1ZN6) (PUBMED:30554877;31504793) VTP52942.1
Alteromonas macleodii MIT1002 2441 0.01060752 0.002434915 0.003744579 0.005387034 K02014 nan Outer membrane cobalamin receptor protein BtuB (BtuB) (PDB:1NQE) VTP52944.1
Alteromonas macleodii MIT1002 2442 nan VTP55588.1
Alteromonas macleodii MIT1002 2443 nan VTP54123.1
Alteromonas macleodii MIT1002 2444 6.41024E-5 8.04194E-5 1.13636E-4 8.74123E-6 K01524 nan Exopolyphosphatase/pppGpp-phosphohydrolase (GppA) (PDB:1T6C) VTP50497.1
Alteromonas macleodii MIT1002 2445 4.43092E-4 0.001490834 6.90542E-4 5.31711E-4 K03732 nan Superfamily II DNA and RNA helicase (SrmB) (PDB:3RRM) VTP50498.1
Alteromonas macleodii MIT1002 2446 0.004410407 0.007398628 0.007363344 0.010006874 K03671 nan Chaperedoxin CnoX, contains thioredoxin-like and TPR-like domains, YbbN/TrxSC family (CnoX) (PDB:3QDN) (PUBMED:21498507;29754824) VTP50499.1
Alteromonas macleodii MIT1002 2447 0.003092059 0.007280716 0.007473578 0.003049588 K03628 nan Transcription termination factor Rho (Rho) (PDB:1PVO) VTP50500.1
Alteromonas macleodii MIT1002 2448 6.60883E-4 4.38327E-4 7.53162E-4 2.2493E-4 nan Metal-dependent amidase/aminoacylase/carboxypeptidase (AbgB) (PDB:3RAM) (PUBMED:17307853) VTP50501.1
Alteromonas macleodii MIT1002 2449 9.37492E-7 9.37492E-7 9.37492E-7 2.34373E-6 K20974 nan Signal transduction histidine kinase (BaeS) (PDB:1JOY)!!!CheY-like REC (receiver) domain, includes chemotaxis protein CheY  and sporulation regulator Spo0F (CheY) (PDB:6QRJ) VTP50502.1
Alteromonas macleodii MIT1002 2450 1.34809E-5 K03313 nan Na+/H+ antiporter NhaA (NhaA) (PDB:1ZCD) (PUBMED:25746996) VTP50503.1
Alteromonas macleodii MIT1002 2451 4.18236E-4 0.001263644 0.001438802 0.001254707 K01588 Inosine monophosphate biosynthesis, PRPP + glutamine => IMP Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase (PurE) (PDB:1D7A) VTP50504.1
Alteromonas macleodii MIT1002 2452 3.79974E-4 7.58396E-4 9.36751E-4 4.02462E-4 K01589 Inosine monophosphate biosynthesis, PRPP + glutamine => IMP Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) (PurK) (PDB:1B6R) VTP50505.1
Alteromonas macleodii MIT1002 2453 4.85838E-6 4.37254E-5 K09796 nan Copper(I)-binding protein (PDB:1X9L) VTP50506.1
Alteromonas macleodii MIT1002 2454 0.003442789 0.018098911 0.004058906 0.007314993 K04047 nan DNA-binding ferritin-like protein (oxidative damage protectant) (Dps) (PDB:1DPS) VTP50507.1
Alteromonas macleodii MIT1002 2455 2.16299E-5 3.20719E-5 5.59394E-6 2.23758E-6 K21430 nan Glucose/arabinose dehydrogenase, beta-propeller fold (YliI) (PDB:1C9U) VTP50508.1
Alteromonas macleodii MIT1002 2456 8.26753E-5 2.84354E-4 6.2633E-5 5.02317E-4 K01303 nan Dipeptidyl aminopeptidase/acylaminoacyl peptidase (DAP2) (PDB:2JBW) VTP50509.1
Alteromonas macleodii MIT1002 2457 nan Uncharacterized conserved protein, DUF962 domain VTP50510.1
Alteromonas macleodii MIT1002 2458 7.08971E-4 0.002626945 0.00106092 4.38162E-4 K05838 nan Chaperedoxin CnoX, contains thioredoxin-like and TPR-like domains, YbbN/TrxSC family (CnoX) (PDB:3QDN) (PUBMED:21498507;29754824) VTP50511.1
Alteromonas macleodii MIT1002 2459 nan VTP50512.1
Alteromonas macleodii MIT1002 2460 3.21538E-5 2.16851E-5 6.05687E-5 1.45814E-5 nan Selenocysteine lyase/Cysteine desulfurase (CsdA) (PDB:4LW2) VTP50513.1
Alteromonas macleodii MIT1002 2461 K09937 nan Uncharacterized conserved protein YjeT, DUF2065 family (yjeT) VTP50514.1
Alteromonas macleodii MIT1002 2462 0.002416903 0.004829735 0.009093581 0.005345414 K01939 Adenine ribonucleotide biosynthesis, IMP => ADP,ATP Adenylosuccinate synthase (PurA) (PDB:1ADE) VTP50515.1
Alteromonas macleodii MIT1002 2463 4.82274E-4 1.30903E-4 3.82061E-5 3.75798E-5 nan Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenase (AdhE) (PDB:1A4S) VTP50516.1
Alteromonas macleodii MIT1002 2464 5.735E-5 K06991 nan Predicted dioxygenase of extradiol dioxygenase family VTP50517.1
Alteromonas macleodii MIT1002 2465 nan Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF (NqrF) (PDB:4P6V) VTP50518.1
Alteromonas macleodii MIT1002 2466 nan NYN domain, predicted PIN-related RNAse, tRNA/rRNA maturation (LabA) (PDB:2QIP) VTP50519.1
Alteromonas macleodii MIT1002 2467 0.001244745 0.001677255 0.00130009 0.004240796 K00681 nan Gamma-glutamyltranspeptidase (Ggt) (PDB:2Z8I) (PUBMED:16618936) VTP50520.1
Alteromonas macleodii MIT1002 2468 1.85602E-5 4.22404E-5 1.72801E-5 3.26403E-5 K18218 nan Na+/H+ antiporter NhaC/MleN (NhaC) VTP50521.1
Alteromonas macleodii MIT1002 2469 2.32492E-5 1.3676E-6 K01207 nan Periplasmic beta-glucosidase and related glycosidases (BglX) (PDB:2X40) VTP50522.1
Alteromonas macleodii MIT1002 2470 9.88053E-6 9.88053E-6 nan Small-conductance mechanosensitive channel MscK (MscK) VTP50523.1
Alteromonas macleodii MIT1002 2471 1.70011E-5 7.03494E-6 1.75873E-6 nan Uncharacterized conserved protein YbbC, DUF1343 family (YbbC) (PDB:4JJA) VTP50524.1
Alteromonas macleodii MIT1002 2472 K07106 nan N-acetylmuramic acid 6-phosphate (MurNAc-6-P) etherase (MurQ) (PDB:4S12) (PUBMED:10095793) VTP50525.1
Alteromonas macleodii MIT1002 2473 1.96507E-5 2.45633E-5 3.35699E-5 9.82533E-6 K01775 nan Alanine racemase (Alr) (PDB:1BD0) VTP50526.1
Alteromonas macleodii MIT1002 2474 nan Uncharacterized membrane-anchored protein YitT, contains DUF161 and DUF2179 domains (YitT) (PDB:3HLU) VTP50527.1
Alteromonas macleodii MIT1002 2475 nan VTP50528.1
Alteromonas macleodii MIT1002 2476 nan Catechol 2,3-dioxygenase or related enzyme, vicinal oxygen chelate (VOC) family (GloA) (PDB:3R4Q) (PUBMED:11830595) VTP50529.1
Alteromonas macleodii MIT1002 2477 K19000 nan Transcriptional antiterminator Rof (Rho-off) (Rof) (PDB:1SG5) VTP50530.1
Alteromonas macleodii MIT1002 2478 8.66761E-5 2.36389E-6 5.90973E-6 3.42764E-5 K07221 nan VTP50531.1
Alteromonas macleodii MIT1002 2479 2.6547E-5 9.95512E-6 4.31388E-5 K02030 nan ABC-type amino acid transport/signal transduction system, periplasmic component/domain (HisJ) (PDB:1GGG) VTP50532.1
Alteromonas macleodii MIT1002 2480 1.03944E-5 2.07888E-6 nan Mn2+ or Fe2+ transporter, NRAMP family (MntH) (PDB:5KTE) VTP50533.1
Alteromonas macleodii MIT1002 2481 nan VTP50534.1
Alteromonas macleodii MIT1002 2482 2.66475E-5 3.57637E-5 2.38425E-5 8.415E-5 K00600 Photorespiration Glycine/serine hydroxymethyltransferase (GlyA) (PDB:1BJ4) VTP50535.1
Alteromonas macleodii MIT1002 2483 nan DNA-binding transcriptional regulator, LysR family (LysR) (PDB:2FYI) VTP50536.1
Alteromonas macleodii MIT1002 2484 2.0169E-5 K06193 nan Uncharacterized Zn-ribbon-containing protein (PhnA) (PDB:2AKK) VTP50537.1
Alteromonas macleodii MIT1002 2485 K03829 nan Ribosomal protein S18 acetylase RimI and related acetyltransferases (RimI) (PDB:1GHE) VTP50538.1
Alteromonas macleodii MIT1002 2486 1.44633E-5 nan Ribosomal protein S18 acetylase RimI and related acetyltransferases (RimI) (PDB:1GHE) VTP50539.1
Alteromonas macleodii MIT1002 2487 K09771 nan Uncharacterized inner membrane protein YnfA, drug/metabolite transporter superfamily (YnfA) (PUBMED:25560019) VTP50540.1
Alteromonas macleodii MIT1002 2488 2.44269E-5 7.32806E-5 7.6334E-5 nan Periplasmic protein TonB, links inner and outer membranes (TonB) (PDB:1IHR) VTP50541.1
Alteromonas macleodii MIT1002 2489 K03973 nan Phage shock protein PspC (stress-responsive transcriptional regulator) (PspC) VTP50542.1
Alteromonas macleodii MIT1002 2490 nan Thiol-disulfide isomerase or thioredoxin (TrxA) (PDB:1XFL) VTP50543.1
Alteromonas macleodii MIT1002 2491 nan Uncharacterized conserved protein YwqG, DUF1963 family (YwqG) (PDB:1PV5) VTP50544.1
Alteromonas macleodii MIT1002 2492 nan VTP50545.1
Alteromonas macleodii MIT1002 2493 nan Transposase VTP54239.1
Alteromonas macleodii MIT1002 2494 nan VTP55068.1
Alteromonas macleodii MIT1002 2495 K13936 nan Predicted permease, AEC (auxin efflux carrier) family (YfdV) VTP55070.1
Alteromonas macleodii MIT1002 2496 2.1318E-5 2.1318E-5 nan Cytochrome c, mono- and diheme variants (CccA) (PDB:1A2S) VTP55072.1
Alteromonas macleodii MIT1002 2497 1.5469E-4 2.26616E-5 K00114 nan Glucose dehydrogenase, PQQ-dependent (Gcd) (PDB:1FLG) VTP55074.1
Alteromonas macleodii MIT1002 2498 K02030 nan ABC-type amino acid transport/signal transduction system, periplasmic component/domain (HisJ) (PDB:1GGG) VTP55076.1
Alteromonas macleodii MIT1002 2499 nan ABC-type branched-chain amino acid transport system, periplasmic component (LivK) (PDB:1USG) VTP55078.1
Alteromonas macleodii MIT1002 2500 2.70575E-6 nan DNA-binding beta-propeller fold protein YncE (YncE) (PDB:3VGZ) (PUBMED:22120742;28628661) VTP55080.1
Alteromonas macleodii MIT1002 2501 K10822 nan ABC-type multidrug transport system, ATPase component (CcmA) (PDB:5DO7) VTP55082.1
Alteromonas macleodii MIT1002 2502 nan ABC-type multidrug transport system, permease component (YadH) VTP55084.1
Alteromonas macleodii MIT1002 2503 K01255 nan Leucyl aminopeptidase (PepB) (PDB:3H8E) (PUBMED:19553197;23825549) VTP55086.1
Alteromonas macleodii MIT1002 2504 K06136 nan Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase (PhnP) (PDB:6B9V) VTP55088.1
Alteromonas macleodii MIT1002 2505 3.38667E-5 5.60553E-5 K06137 nan Pyrroloquinoline quinone (PQQ) biosynthesis protein C (PqqC) (PDB:1OTV) VTP55090.1
Alteromonas macleodii MIT1002 2506 K06138 nan VTP55091.1
Alteromonas macleodii MIT1002 2507 K06139 nan Radical SAM superfamily maturase, SkfB/NifB/PqqE family (SkfB) (PDB:6Q2P) (PUBMED:23282011) VTP55093.1
Alteromonas macleodii MIT1002 2508 nan Zn-dependent peptidase, M16 (insulinase) family (Cym1) (PDB:2FGE) VTP55095.1
Alteromonas macleodii MIT1002 2509 0.004439216 4.99014E-4 K02014 nan Outer membrane cobalamin receptor protein BtuB (BtuB) (PDB:1NQE) VTP55097.1
Alteromonas macleodii MIT1002 2510 K01730 nan Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK (TesA) (PDB:1BWP) VTP55099.1
Alteromonas macleodii MIT1002 2511 2.7141E-6 5.12663E-6 9.04699E-7 K02014 nan Outer membrane receptor for ferrienterochelin and colicins (FepA) (PDB:2HDF) (PUBMED:16468998) VTP55101.1
Alteromonas macleodii MIT1002 2512 nan Signal transduction histidine kinase (BaeS) (PDB:1JOY) VTP55105.1
Alteromonas macleodii MIT1002 2513 9.67859E-5 5.50296E-4 3.3875E-4 2.07398E-4 nan Ribose 5-phosphate isomerase RpiB (RpiB) (PDB:1NN4) VTP55107.1
Alteromonas macleodii MIT1002 2514 2.30805E-6 5.77012E-6 nan FMN-dependent dehydrogenase, includes L-lactate dehydrogenase and type II isopentenyl diphosphate isomerase (LldD) (PDB:6AI7) VTP55109.1
Alteromonas macleodii MIT1002 2515 1.15617E-5 K01820 nan L-rhamnose isomerase (PDB:3M0Y) VTP55111.1
Alteromonas macleodii MIT1002 2516 1.20461E-6 nan NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family (FabG) (PDB:6L1H)!!!Rhamnose utilisation protein RhaD, predicted bifunctional aldolase and dehydrogenase (RhaD) (PDB:3M4R) VTP55113.1
Alteromonas macleodii MIT1002 2517 3.0323E-5 4.26768E-5 1.34769E-5 K03477 nan DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family (GlpR) VTP55115.1
Alteromonas macleodii MIT1002 2518 4.75848E-6 2.37924E-5 1.90339E-6 K00879 nan Sugar (pentulose or hexulose) kinase (XylB) (PDB:4C23) VTP55117.1
Alteromonas macleodii MIT1002 2519 K00874 Semi-phosphorylative Entner-Doudoroff pathway, gluconate => glycerate-3P Sugar or nucleoside kinase, ribokinase family (RbsK) (PDB:2QCV) VTP55119.1
Alteromonas macleodii MIT1002 2520 nan DNA-binding transcriptional regulator, IclR family (IclR) (PDB:1MKM) VTP55121.1
Alteromonas macleodii MIT1002 2521 1.27444E-4 5.21364E-5 K00065 Fatty acid biosynthesis, elongation NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family (FabG) (PDB:6L1H) VTP55123.1
Alteromonas macleodii MIT1002 2522 1.96287E-6 K01730 nan Periplasmic component TolB of the Tol biopolymer transport system (TolB) (PDB:1C5K) VTP55125.1
Alteromonas macleodii MIT1002 2523 K16210 nan Na+/melibiose symporter or related transporter (MelB) (PDB:4M64) VTP55127.1
Alteromonas macleodii MIT1002 2524 1.75236E-5 9.55834E-6 K15532 nan Rhamnogalacturonyl hydrolase YesR (YesR) (PDB:1NC5) VTP55129.1
Alteromonas macleodii MIT1002 2525 8.48684E-6 2.44813E-5 9.79251E-7 3.917E-6 nan VTP55131.1
Alteromonas macleodii MIT1002 2526 nan VTP55133.1
Alteromonas macleodii MIT1002 2527 K03534 nan L-rhamnose mutarotase (RhaM) (PDB:1X8D) VTP55135.1
Alteromonas macleodii MIT1002 2528 nan VTP55139.1
Alteromonas macleodii MIT1002 2529 nan VTP55141.1
Alteromonas macleodii MIT1002 2530 3.58341E-5 8.60017E-6 nan Outer membrane porin OmpC/OmpF/PhoE (OmpC) (PDB:1PHO) VTP55143.1
Alteromonas macleodii MIT1002 2531 nan Transposase and inactivated derivatives, TnpA family VTP52840.1
Alteromonas macleodii MIT1002 2532 nan Predicted Zn-dependent metalloprotease, SprT family (SprT) VTP52838.1
Alteromonas macleodii MIT1002 2533 nan Superfamily II DNA or RNA helicase (SSL2) (PDB:6JDE) VTP52836.1
Alteromonas macleodii MIT1002 2534 nan VTP52834.1
Alteromonas macleodii MIT1002 2535 nan Transcriptional regulator, contains XRE-family HTH domain (HipB) (PDB:1ADR) VTP52832.1
Alteromonas macleodii MIT1002 2536 nan Site-specific recombinase XerD (XerD) (PDB:1A0P) VTP52830.1
Alteromonas macleodii MIT1002 2537 nan Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB (EnvC) VTP52828.1
Alteromonas macleodii MIT1002 2538 K06900 nan Patatin-like phospholipase/acyl hydrolase, includes sporulation protein CotR (PATA) (PDB:1OXW) VTP52826.1
Alteromonas macleodii MIT1002 2539 nan VTP52824.1
Alteromonas macleodii MIT1002 2540 nan tRNA A37 threonylcarbamoyladenosine dehydratase (TcdA) (PDB:4D7A) (PUBMED:27913733) VTP52822.1
Alteromonas macleodii MIT1002 2541 nan VTP52820.1
Alteromonas macleodii MIT1002 2542 nan Glutathione S-transferase (GstA) (PDB:1A0F) VTP52818.1
Alteromonas macleodii MIT1002 2543 K07497 nan Transposase InsO and inactivated derivatives (Tra5)!!!Transposase InsE and inactivated derivatives (InsE) (PDB:2JN6) (PUBMED:23818957) VTP52816.1
Alteromonas macleodii MIT1002 2544 K07483 nan Transposase InsE and inactivated derivatives (InsE) (PDB:2JN6) (PUBMED:23818957) VTP52814.1
Alteromonas macleodii MIT1002 2545 K00799 nan Glutathione S-transferase (GstA) (PDB:1A0F) VTP52812.1
Alteromonas macleodii MIT1002 2546 3.48955E-5 1.25624E-4 1.39582E-4 K01821 Catechol meta-cleavage, catechol => acetyl-CoA / 4-methylcatechol => propanoyl-CoA Phenylpyruvate tautomerase PptA, 4-oxalocrotonate tautomerase family (PptA) (PDB:1BJP) VTP52810.1
Alteromonas macleodii MIT1002 2547 2.32938E-4 2.70832E-4 2.44083E-4 1.88914E-4 K01617 Catechol meta-cleavage, catechol => acetyl-CoA / 4-methylcatechol => propanoyl-CoA 2-keto-4-pentenoate hydratase (MhpD) (PDB:1SV6) VTP52808.1
Alteromonas macleodii MIT1002 2548 1.66274E-4 1.27705E-4 3.11121E-4 2.48126E-4 K18365 Catechol meta-cleavage, catechol => acetyl-CoA / 4-methylcatechol => propanoyl-CoA Isopropylmalate/homocitrate/citramalate synthases (LeuA) (PDB:4JN6) VTP52806.1
Alteromonas macleodii MIT1002 2549 1.9348E-4 3.51167E-4 5.54321E-4 9.43216E-5 K18366 Catechol meta-cleavage, catechol => acetyl-CoA / 4-methylcatechol => propanoyl-CoA Acetaldehyde dehydrogenase (acetylating) (MhpF) (PDB:4JN6) VTP52804.1
Alteromonas macleodii MIT1002 2550 7.41229E-5 1.08938E-4 9.32152E-5 8.75998E-5 K18364 Catechol meta-cleavage, catechol => acetyl-CoA / 4-methylcatechol => propanoyl-CoA 2-keto-4-pentenoate hydratase (MhpD) (PDB:1SV6) VTP52802.1
Alteromonas macleodii MIT1002 2551 7.43426E-5 3.61093E-5 3.18611E-5 2.07098E-5 K10216 Catechol meta-cleavage, catechol => acetyl-CoA / 4-methylcatechol => propanoyl-CoA 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase MenH and related esterases, alpha/beta hydrolase fold (MenH) (PDB:4MYS) VTP52800.1
Alteromonas macleodii MIT1002 2552 1.08564E-5 2.26175E-5 K10217 Tryptophan metabolism, tryptophan => kynurenine => 2-aminomuconate Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenase (AdhE) (PDB:1A4S) VTP52798.1
Alteromonas macleodii MIT1002 2553 4.77398E-5 1.43219E-5 K00446 Catechol meta-cleavage, catechol => acetyl-CoA / 4-methylcatechol => propanoyl-CoA Catechol-2,3-dioxygenase (CatE) VTP52796.1
Alteromonas macleodii MIT1002 2554 nan Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF (NqrF) (PDB:4P6V) VTP52794.1
Alteromonas macleodii MIT1002 2555 9.99281E-6 2.24838E-5 K16246 Benzene degradation, benzene => catechol Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF (NqrF) (PDB:4P6V) VTP52792.1
Alteromonas macleodii MIT1002 2556 K16245 Benzene degradation, benzene => catechol VTP52790.1
Alteromonas macleodii MIT1002 2557 K16242 Benzene degradation, benzene => catechol Heavy metal-bindng TRASH/YHS domain, predicted Cu/Ag metallochaperone (YHS) VTP52788.1
Alteromonas macleodii MIT1002 2558 K16244 Benzene degradation, benzene => catechol VTP52786.1
Alteromonas macleodii MIT1002 2559 K16243 Benzene degradation, benzene => catechol VTP52784.1
Alteromonas macleodii MIT1002 2560 K16249 Benzene degradation, benzene => catechol VTP52782.1
Alteromonas macleodii MIT1002 2561 4.04665E-5 8.50834E-5 1.5564E-6 3.89101E-6 nan FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis domains (FhlA) VTP52780.1
Alteromonas macleodii MIT1002 2562 nan Uncharacterized conserved protein related to plant photosystem II stability/assembly factor (PDB:2XBG) VTP52778.1
Alteromonas macleodii MIT1002 2563 K07003 nan Predicted exporter protein, RND superfamily (MMPL) (PDB:5KHN) VTP52776.1
Alteromonas macleodii MIT1002 2564 7.63895E-4 8.50848E-5 9.63048E-5 5.33651E-4 nan VTP52774.1
Alteromonas macleodii MIT1002 2565 2.68529E-4 3.56267E-4 2.15355E-4 1.05683E-4 nan VTP52772.1
Alteromonas macleodii MIT1002 2566 K09932 nan Antibiotic biosynthesis monooxygenase (ABM) superfamily enzyme VTP52770.1
Alteromonas macleodii MIT1002 2567 K04518 Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine Prephenate dehydratase (PheA2) (PDB:1PHZ) VTP52768.1
Alteromonas macleodii MIT1002 2568 K00077 Pantothenate biosynthesis, valine/L-aspartate => pantothenate Ketopantoate reductase (PanE) (PDB:1BG6) VTP52766.1
Alteromonas macleodii MIT1002 2569 nan VTP52764.1
Alteromonas macleodii MIT1002 2570 nan Site-specific recombinase XerD (XerD) (PDB:1A0P) VTP52762.1
Alteromonas macleodii MIT1002 2571 nan VTP52760.1
Alteromonas macleodii MIT1002 2572 2.02619E-6 nan Uncharacterized membrane protein VTP52758.1
Alteromonas macleodii MIT1002 2573 K19610 nan DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain (OmpR) (PDB:1XHF) VTP52756.1
Alteromonas macleodii MIT1002 2574 K19609 nan Signal transduction histidine kinase (BaeS) (PDB:1JOY) VTP52754.1
Alteromonas macleodii MIT1002 2575 K07483 nan Transposase InsO and inactivated derivatives (Tra5)!!!Transposase InsE and inactivated derivatives (InsE) (PDB:2JN6) (PUBMED:23818957) VTP54494.1
Alteromonas macleodii MIT1002 2576 1.80568E-6 K01423 nan Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains (BepA) (PDB:6AIT) (PUBMED:24003122) VTP53018.1
Alteromonas macleodii MIT1002 2577 1.51898E-4 5.66538E-5 5.41907E-5 1.04686E-4 K03548 nan Predicted PurR-regulated permease PerM (PerM) VTP53016.1
Alteromonas macleodii MIT1002 2578 1.28479E-4 0.001473226 9.7073E-4 7.13772E-5 K03564 nan Peroxiredoxin (Bcp) (PDB:5IPH) VTP53014.1
Alteromonas macleodii MIT1002 2579 4.54575E-5 5.643E-5 4.23225E-5 K03567 nan Glycine cleavage system regulator GcvR (GcvR) (PDB:1U8S) VTP53012.1
Alteromonas macleodii MIT1002 2580 4.59624E-4 6.86944E-4 8.08579E-4 3.3051E-4 K01714 Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine 4-hydroxy-tetrahydrodipicolinate synthase/N-acetylneuraminate lyase (DapA) (PDB:2R91) (PUBMED:27574185) VTP53010.1
Alteromonas macleodii MIT1002 2581 0.001904098 0.001152522 0.00104949 5.04378E-4 K07287 nan Outer membrane beta-barrel protein assembly factor BamC (BamC) (PDB:2LAE) (PUBMED:21823654;28760846) VTP53008.1
Alteromonas macleodii MIT1002 2582 8.23711E-4 0.002970802 0.003628782 0.001419232 K01923 Inosine monophosphate biosynthesis, PRPP + glutamine => IMP Phosphoribosylaminoimidazole-succinocarboxamide synthase (PurC) (PDB:1A48) VTP53006.1
Alteromonas macleodii MIT1002 2583 nan Permease of the drug/metabolite transporter (DMT) superfamily (RhaT) (PDB:5I20) VTP53004.1
Alteromonas macleodii MIT1002 2584 nan GGDEF domain, diguanylate cyclase (c-di-GMP synthetase) or its enzymatically inactive variants (GGDEF) (PDB:6D9M) VTP53002.1
Alteromonas macleodii MIT1002 2585 1.13175E-6 K21023 nan GAF domain (GAF)!!!Cyclic di-GMP metabolism protein, combines GGDEF and EAL domains with a 6TM membrane domain VTP53000.1
Alteromonas macleodii MIT1002 2586 3.13199E-5 1.82298E-4 2.36104E-4 6.02306E-6 nan 2,4-dienoyl-CoA reductase or related NADH-dependent reductase, Old Yellow Enzyme (OYE) family (FadH) (PDB:1BWK) VTP52998.1
Alteromonas macleodii MIT1002 2587 nan VTP52996.1
Alteromonas macleodii MIT1002 2588 nan Uncharacterized conserved protein, DUF2164 family VTP52994.1
Alteromonas macleodii MIT1002 2589 nan NADP-dependent 3-hydroxy acid dehydrogenase YdfG (YdfG) (PDB:3P19) VTP52992.1
Alteromonas macleodii MIT1002 2590 K11107 nan Ferredoxin (Fdx) (PDB:1KRH) VTP52990.1
Alteromonas macleodii MIT1002 2591 3.00918E-4 1.90997E-4 2.85327E-4 1.16937E-4 K00526 Pyrimidine deoxyribonuleotide biosynthesis, CDP/CTP => dCDP/dCTP,dTDP/dTTP Ribonucleotide reductase beta subunit, ferritin-like domain (NrdB) (PDB:1AV8) VTP52988.1
Alteromonas macleodii MIT1002 2592 5.76765E-4 0.004024082 0.001847468 0.001912311 K00525 Pyrimidine deoxyribonuleotide biosynthesis, CDP/CTP => dCDP/dCTP,dTDP/dTTP Ribonucleotide reductase alpha subunit (NrdA) (PDB:1R1R) VTP52986.1
Alteromonas macleodii MIT1002 2593 8.9941E-4 2.66817E-4 3.25692E-4 K00568 Ubiquinone biosynthesis, prokaryotes, chorismate (+ polyprenyl-PP) => ubiquinol 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase (UbiG) (PDB:1BHJ) VTP52984.1
Alteromonas macleodii MIT1002 2594 0.003091404 0.005101757 0.003723368 0.003635172 K02469 nan DNA gyrase/topoisomerase IV, subunit A (GyrA) (PDB:1SUU) VTP52982.1
Alteromonas macleodii MIT1002 2595 0.002721735 0.002106259 0.002203696 0.002343356 K00831 Serine biosynthesis, glycerate-3P => serine Phosphoserine aminotransferase (SerC) (PDB:1BJN) VTP52980.1
Alteromonas macleodii MIT1002 2596 2.40264E-4 8.62206E-4 7.24912E-4 4.1703E-4 K00800 Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate 5-enolpyruvylshikimate-3-phosphate synthase (AroA) (PDB:4N3P) VTP52978.1
Alteromonas macleodii MIT1002 2597 1.41961E-4 7.04546E-4 4.548E-4 2.68148E-4 K00945 nan Cytidylate kinase (Cmk) (PDB:3R20) (PUBMED:19111750;25691594;28928205) VTP52976.1
Alteromonas macleodii MIT1002 2598 0.06078442 0.061579965 0.066980064 0.07529425 K02945 nan Ribosomal protein S1 (RpsA) (PDB:4NNH) VTP52974.1
Alteromonas macleodii MIT1002 2599 2.31413E-5 3.7026E-5 3.7026E-5 K05788 nan Bacterial nucleoid DNA-binding protein IHF-alpha (HimA) (PDB:1B8Z) VTP52972.1
Alteromonas macleodii MIT1002 2600 7.32804E-6 nan VTP52970.1
Alteromonas macleodii MIT1002 2601 K08992 nan Lipopolysaccharide assembly protein YciS/LapA, DUF1049 family (YciS) (PUBMED:24722986) VTP52968.1
Alteromonas macleodii MIT1002 2602 4.00124E-4 1.83107E-4 1.80847E-5 2.82574E-5 K19804 nan Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain (LapB) (PDB:4ZLH) (PUBMED:24187084;24266962) VTP52966.1
Alteromonas macleodii MIT1002 2603 3.79038E-5 1.62986E-4 1.08658E-4 3.41134E-5 K01591 Uridine monophosphate biosynthesis, glutamine (+ PRPP) => UMP Orotidine-5'-phosphate decarboxylase (PyrF) (PDB:1DBT) VTP52964.1
Alteromonas macleodii MIT1002 2604 0.001345098 0.013419099 0.003614658 0.027025968 K00259 nan Alanine dehydrogenase (includes sporulation protein SpoVN) (Ald) (PDB:2EEZ) VTP52962.1
Alteromonas macleodii MIT1002 2605 nan VTP52960.1
Alteromonas macleodii MIT1002 2606 2.18476E-5 5.46191E-6 K03719 nan DNA-binding transcriptional regulator, Lrp family (Lrp) (PDB:1I1G) VTP52958.1
Alteromonas macleodii MIT1002 2607 1.07048E-5 9.63429E-5 4.62825E-5 4.0143E-5 K03466 nan DNA segregation ATPase FtsK/SpoIIIE or related protein (FtsK) (PDB:2IUT) VTP52956.1
Alteromonas macleodii MIT1002 2608 8.23737E-5 3.10239E-5 1.28375E-5 K03634 nan Outer membrane lipoprotein-sorting protein (LolA) (PDB:1IWL) VTP52954.1
Alteromonas macleodii MIT1002 2609 2.02153E-6 4.04307E-6 K07478 nan Replication-associated recombination protein RarA (DNA-dependent ATPase) (RarA) (PDB:3PVS) VTP52952.1
Alteromonas macleodii MIT1002 2610 K06199 nan Fluoride ion exporter CrcB/FEX, affects chromosome condensation (CrcB) (PDB:5A40) VTP52950.1
Alteromonas macleodii MIT1002 2611 4.38668E-4 0.002689551 0.001692393 5.53413E-4 K01875 nan Seryl-tRNA synthetase (SerS) (PDB:1SER) VTP52948.1
Alteromonas macleodii MIT1002 2612 K07494 nan CRISPR-associated protein Csa3, CARF domain (Csa3) (PDB:2WTE) (PUBMED:21093452)
Alteromonas macleodii MIT1002 2613 nan VTP55584.1
Alteromonas macleodii MIT1002 2614 nan
Alteromonas macleodii MIT1002 2615 nan DNA-binding transcriptional regulator, LysR family (LysR) (PDB:2FYI) VTP55409.1
Alteromonas macleodii MIT1002 2616 nan Catechol 2,3-dioxygenase or related enzyme, vicinal oxygen chelate (VOC) family (GloA) (PDB:3R4Q) (PUBMED:11830595) VTP55407.1
Alteromonas macleodii MIT1002 2617 K01069 nan Glyoxylase or a related metal-dependent hydrolase, beta-lactamase superfamily II (GloB) (PDB:1QH3) (PUBMED:25670698) VTP55405.1
Alteromonas macleodii MIT1002 2618 nan Serine transporter YbeC, amino acid:H+ symporter family (PotE) (PDB:3LRB) VTP55403.1
Alteromonas macleodii MIT1002 2619 1.55365E-6 2.58942E-5 3.1073E-6 6.21461E-6 nan Predicted amidohydrolase YtcJ (YtcJ) (PDB:3ICJ) VTP55401.1
Alteromonas macleodii MIT1002 2620 K01754 Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine Threonine deaminase (IlvA) (PDB:3IAU) VTP55399.1
Alteromonas macleodii MIT1002 2621 nan GGDEF domain, diguanylate cyclase (c-di-GMP synthetase) or its enzymatically inactive variants (GGDEF) (PDB:6D9M)!!!EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant) (EAL) (PDB:2BAS)!!!PAS domain (PAS) (PDB:2MWG) VTP55397.1
Alteromonas macleodii MIT1002 2622 2.10386E-4 4.01862E-5 2.83667E-5 1.77292E-5 nan VTP55395.1
Alteromonas macleodii MIT1002 2623 0.00234256 0.001147492 0.001626084 0.0032816 K01278 nan Dipeptidyl aminopeptidase/acylaminoacyl peptidase (DAP2) (PDB:2JBW) VTP55393.1
Alteromonas macleodii MIT1002 2624 K17290 nan Uncharacterized conserved protein YbjT, contains NAD(P)-binding and DUF2867 domains (YbjT) (PDB:5L3Z) VTP55391.1
Alteromonas macleodii MIT1002 2625 K15460 nan tRNA1(Val) A37 N6-methylase TrmN6 (TrmN6) VTP55389.1
Alteromonas macleodii MIT1002 2626 nan VTP55387.1
Alteromonas macleodii MIT1002 2627 nan VTP55385.1
Alteromonas macleodii MIT1002 2628 1.18673E-6 1.18673E-6 K00694 nan Glycosyltransferase, catalytic subunit of cellulose synthase and poly-beta-1,6-N-acetylglucosamine synthase (BcsA) (PDB:4HG6) VTP55383.1
Alteromonas macleodii MIT1002 2629 6.23755E-4 7.54075E-5 2.57932E-4 5.87599E-4 K20541 nan VTP55381.1
Alteromonas macleodii MIT1002 2630 7.16876E-6 9.55834E-6 1.55323E-5 9.55834E-6 K20542 nan Endo-1,4-beta-D-glucanase Y (BcsZ) (PDB:1CEM) VTP55379.1
Alteromonas macleodii MIT1002 2631 1.70716E-4 1.30761E-5 5.08515E-6 7.08289E-5 nan Chaperedoxin CnoX, contains thioredoxin-like and TPR-like domains, YbbN/TrxSC family (CnoX) (PDB:3QDN) (PUBMED:21498507;29754824) VTP55377.1
Alteromonas macleodii MIT1002 2632 nan Uncharacterized conserved protein RhaS, contains 28 RHS repeats (RhsA) (PDB:4IGL) VTP55375.1
Alteromonas macleodii MIT1002 2633 0.001213441 0.002907516 0.001523806 0.001257625 K03559 nan Biopolymer transport protein ExbD (ExbD) (PDB:2JWK) VTP55373.1
Alteromonas macleodii MIT1002 2634 nan DNA utilization protein ComFC/GntX, contains phosphoribosyltransferase domain (ComFC) (PUBMED:28618091) VTP55371.1
Alteromonas macleodii MIT1002 2635 1.97611E-5 1.97611E-5 4.44624E-5 K03840 nan Flavodoxin (FldA) (PDB:1AG9) VTP55369.1
Alteromonas macleodii MIT1002 2636 5.6642E-6 1.41605E-6 nan Phosphodiesterase/alkaline phosphatase D (PhoD) (PDB:2YEQ) VTP55367.1
Alteromonas macleodii MIT1002 2637 6.56972E-4 3.24556E-4 4.63652E-4 5.30449E-4 nan Uncharacterized Ca-binding beta-propeller protein YjiK (YjiK) (PDB:3QQZ) VTP55365.1
Alteromonas macleodii MIT1002 2638 2.75308E-5 1.74902E-4 4.37254E-5 2.4292E-4 K07304 nan Peptide methionine sulfoxide reductase MsrA (MsrA) (PDB:1FF3) VTP55363.1
Alteromonas macleodii MIT1002 2639 nan Predicted thiol-disulfide oxidoreductase YuxK, DCC family (YuxK) (PUBMED:15236740) VTP55361.1
Alteromonas macleodii MIT1002 2640 nan NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family (FabG) (PDB:6L1H) VTP55359.1
Alteromonas macleodii MIT1002 2641 1.36336E-5 2.9746E-5 K03308 nan Na+-dependent transporter, SNF family (YocR) (PDB:2A65) VTP55357.1
Alteromonas macleodii MIT1002 2642 1.30277E-5 2.117E-5 nan Nucleoside-diphosphate-sugar epimerase (WcaG) (PDB:2X4G) VTP55355.1
Alteromonas macleodii MIT1002 2643 nan VTP55353.1
Alteromonas macleodii MIT1002 2644 nan VTP55351.1
Alteromonas macleodii MIT1002 2645 1.27788E-4 1.44915E-5 1.25154E-5 1.4722E-4 K16053 nan Small-conductance mechanosensitive channel (MscS) (PDB:2OAU) VTP55349.1
Alteromonas macleodii MIT1002 2646 5.92165E-6 1.18433E-5 nan 1-acyl-sn-glycerol-3-phosphate acyltransferase (PlsC) (PDB:1IUQ) VTP55347.1
Alteromonas macleodii MIT1002 2647 5.06215E-4 4.62825E-5 7.13521E-5 1.04136E-4 nan 1-acyl-sn-glycerol-3-phosphate acyltransferase (PlsC) (PDB:1IUQ) VTP55345.1
Alteromonas macleodii MIT1002 2648 6.22885E-4 0.00139966 0.001177724 1.53889E-4 K01070 nan S-formylglutathione hydrolase FrmB (FrmB) (PDB:1DQY) VTP55343.1
Alteromonas macleodii MIT1002 2649 nan VTP55584.1
Alteromonas macleodii MIT1002 2650 nan
Alteromonas macleodii MIT1002 2651 3.0855E-6 5.86245E-5 4.21685E-5 1.2342E-5 K11209 nan Glutathione S-transferase (GstA) (PDB:1A0F) VTP50442.1
Alteromonas macleodii MIT1002 2652 4.2896E-5 9.65159E-5 3.35125E-5 nan VTP50441.1
Alteromonas macleodii MIT1002 2653 6.0565E-4 0.001718903 0.001827674 0.001299136 K00029 CAM (Crassulacean acid metabolism), light Malic enzyme (SfcA) (PDB:1DO8) VTP50440.1
Alteromonas macleodii MIT1002 2654 0.002626866 0.001040634 0.001047244 0.001406294 K05366 nan Membrane carboxypeptidase/penicillin-binding protein (MrcA) (PDB:3D0F) VTP50439.1
Alteromonas macleodii MIT1002 2655 2.47709E-6 1.56882E-5 6.19273E-6 K02662 nan Type IV pilus assembly protein, ATPase PilM (PilM) (PDB:2YCH) VTP50438.1
Alteromonas macleodii MIT1002 2656 1.83202E-5 1.34348E-4 2.97703E-5 7.78607E-5 K02663 nan Type IV pilus assembly protein PilN (PilN) VTP50437.1
Alteromonas macleodii MIT1002 2657 1.73274E-5 1.08296E-5 4.33186E-6 K02664 nan Type IV pilus assembly protein PilO (PilO) (PDB:2RJZ) VTP50436.1
Alteromonas macleodii MIT1002 2658 5.02496E-6 2.00998E-5 K02665 nan Type IV pilus assembly protein PilP (PilP) (PDB:2IVW) VTP50435.1
Alteromonas macleodii MIT1002 2659 4.67506E-4 1.79351E-4 1.39606E-4 6.81137E-4 K02666 nan Type II secretory pathway, component HofQ (HofQ) (PDB:4AV2) VTP50434.1
Alteromonas macleodii MIT1002 2660 4.62825E-5 9.15365E-4 7.09665E-4 1.15706E-4 K00891 Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate Shikimate kinase (AroK) (PDB:1E6C) VTP50433.1
Alteromonas macleodii MIT1002 2661 2.21287E-4 1.75873E-4 9.0579E-4 2.50186E-4 K01735 Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate 3-dehydroquinate synthetase (AroB) (PDB:3ZOK) VTP50432.1
Alteromonas macleodii MIT1002 2662 1.16651E-5 1.79463E-6 1.61516E-5 K03112 nan Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain (DamX) VTP50431.1
Alteromonas macleodii MIT1002 2663 3.00125E-6 K06223 nan DNA-adenine methylase (Dam) (PDB:4GOL) VTP50430.1
Alteromonas macleodii MIT1002 2664 nan VTP50429.1
Alteromonas macleodii MIT1002 2665 nan VTP50428.1
Alteromonas macleodii MIT1002 2666 nan VTP50427.1
Alteromonas macleodii MIT1002 2667 7.42577E-5 6.51383E-5 1.27671E-4 2.5404E-5 K01783 Pentose phosphate pathway (Pentose phosphate cycle) Pentose-5-phosphate-3-epimerase (Rpe) (PDB:1H1Y) VTP50426.1
Alteromonas macleodii MIT1002 2668 1.52249E-4 9.18742E-4 7.26244E-4 5.24996E-4 K01867 nan Tryptophanyl-tRNA synthetase (TrpS) (PDB:3N9I) VTP50425.1
Alteromonas macleodii MIT1002 2669 4.53282E-6 K01658 Tryptophan biosynthesis, chorismate => tryptophan Anthranilate/para-aminobenzoate synthase component II (glutamine amidotransferase) (PabA) (PDB:1I1Q) VTP50424.1
Alteromonas macleodii MIT1002 2670 9.06564E-6 2.03977E-5 9.06564E-6 nan HD-like signal output (HDOD) domain, no enzymatic activity (HDOD) (PDB:1VQR) VTP50423.1
Alteromonas macleodii MIT1002 2671 0.00260529 0.004808084 0.006485152 0.00557917 K00821 Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine Acetylornithine/succinyldiaminopimelate/putrescine aminotransferase (ArgD) (PDB:2E54) VTP50422.1
Alteromonas macleodii MIT1002 2672 6.37224E-6 3.49198E-4 1.75024E-4 1.27444E-5 K00673 Arginine succinyltransferase pathway, arginine => glutamate Arginine/ornithine N-succinyltransferase beta subunit (AstA) (PDB:1YLE) VTP50421.1
Alteromonas macleodii MIT1002 2673 0.002991168 0.004998067 0.00408753 0.007643663 K06447 Arginine succinyltransferase pathway, arginine => glutamate Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenase (AdhE) (PDB:1A4S) VTP50420.1
Alteromonas macleodii MIT1002 2674 1.32343E-4 2.12186E-4 1.97967E-4 5.54526E-4 nan VTP50419.1
Alteromonas macleodii MIT1002 2675 1.21796E-6 1.09616E-5 K21023 nan PAS domain (PAS) (PDB:2MWG)!!!Cyclic di-GMP metabolism protein, combines GGDEF and EAL domains with a 6TM membrane domain VTP50418.1
Alteromonas macleodii MIT1002 2676 4.94027E-6 nan Predicted hydrocarbon binding protein, contains 4VR domain (PDB:2OSD) VTP50417.1
Alteromonas macleodii MIT1002 2677 4.11373E-4 0.001237971 5.78541E-4 9.47543E-5 K02621 nan DNA gyrase/topoisomerase IV, subunit A (GyrA) (PDB:1SUU) VTP50416.1
Alteromonas macleodii MIT1002 2678 1.46402E-4 3.22148E-5 4.49731E-5 8.8511E-5 K20971 nan Signal transduction histidine kinase (BaeS) (PDB:1JOY)!!!CheY-like REC (receiver) domain, includes chemotaxis protein CheY  and sporulation regulator Spo0F (CheY) (PDB:6QRJ)!!!HPt (histidine-containing phosphotransfer) domain (HPtr) (PDB:3IQT) VTP50415.1
Alteromonas macleodii MIT1002 2679 nan Signal transduction histidine kinase (BaeS) (PDB:1JOY)!!!CheY-like REC (receiver) domain, includes chemotaxis protein CheY  and sporulation regulator Spo0F (CheY) (PDB:6QRJ)!!!HPt (histidine-containing phosphotransfer) domain (HPtr) (PDB:3IQT) VTP51792.1
Alteromonas macleodii MIT1002 2680 nan PAS domain (PAS) (PDB:2MWG)!!!Response regulator c-di-GMP phosphodiesterase, RpfG family, contains REC and HD-GYP domains (RpfG)!!!Cyclic di-GMP metabolism protein, combines GGDEF and EAL domains with a 6TM membrane domain VTP51795.1
Alteromonas macleodii MIT1002 2681 1.1495E-5 K02488 nan Two-component response regulator, PleD family, consists of two REC domains and a diguanylate cyclase (GGDEF) domain (PleD) (PDB:1W25) VTP51797.1
Alteromonas macleodii MIT1002 2682 1.31839E-6 nan Signal transduction histidine kinase (BaeS) (PDB:1JOY)!!!CheY-like REC (receiver) domain, includes chemotaxis protein CheY  and sporulation regulator Spo0F (CheY) (PDB:6QRJ) VTP51799.1
Alteromonas macleodii MIT1002 2683 nan Purine nucleoside permease (NUP) VTP51801.1
Alteromonas macleodii MIT1002 2684 1.0843E-6 7.5901E-6 1.0843E-6 K02014 nan Outer membrane receptor protein, Fe transport (CirA) (PDB:1BY3) VTP51803.1
Alteromonas macleodii MIT1002 2685 K16345 nan Xanthine/uracil permease (UraA) (PDB:3QE7) VTP51805.1
Alteromonas macleodii MIT1002 2686 nan VTP51809.1
Alteromonas macleodii MIT1002 2687 2.10879E-6 K02083 nan Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase or related deacylase (ArgE) (PDB:1CG2) VTP51811.1
Alteromonas macleodii MIT1002 2688 2.76452E-4 3.12571E-5 2.18105E-4 7.50171E-5 K00839 nan Archaeal aspartate aminotransferase or a related aminotransferase, includes purine catabolism protein PucG (PucG) (PDB:3NNK) VTP51813.1
Alteromonas macleodii MIT1002 2689 K07090 nan Sulfite exporter TauE/SafE/YfcA and related permeases, UPF0721 family (TauE) (PUBMED:21183667;22797525) VTP51815.1
Alteromonas macleodii MIT1002 2690 2.79164E-5 2.67998E-5 4.52246E-5 2.42873E-5 K22602 nan Gamma-glutamyltranspeptidase (Ggt) (PDB:2Z8I) (PUBMED:16618936) VTP51817.1
Alteromonas macleodii MIT1002 2691 K01426 nan Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase (GatA) (PDB:3H0L) VTP51819.1
Alteromonas macleodii MIT1002 2692 nan Uncharacterized conserved protein, DUF924 family (PDB:2I6H) VTP51821.1
Alteromonas macleodii MIT1002 2693 nan DNA-binding transcriptional regulator, MurR/RpiR family, contains HTH and SIS domains (RpiR) (PDB:2O3F) VTP51823.1
Alteromonas macleodii MIT1002 2694 K07052 nan VTP51825.1
Alteromonas macleodii MIT1002 2695 2.10879E-6 K03442 nan Small-conductance mechanosensitive channel MscK (MscK) VTP51827.1
Alteromonas macleodii MIT1002 2696 8.9503E-6 2.23758E-6 2.01382E-5 3.58012E-5 nan VTP51829.1
Alteromonas macleodii MIT1002 2697 K03793 nan NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family (FabG) (PDB:6L1H) VTP51831.1
Alteromonas macleodii MIT1002 2698 1.19642E-5 K15523 nan Fructosamine-3-kinase (FN3K) (PDB:3F7W) VTP51833.1
Alteromonas macleodii MIT1002 2699 7.61751E-4 0.004798846 0.003110406 0.001102655 K01868 nan Threonyl-tRNA synthetase (ThrS) (PDB:1NYQ) VTP51835.1
Alteromonas macleodii MIT1002 2700 7.1245E-4 0.004840592 0.003446224 0.001505306 K02520 nan Translation initiation factor IF-3 (InfC) (PDB:2IFE) VTP51837.1
Alteromonas macleodii MIT1002 2701 K02916 nan Ribosomal protein L35 (RpmI) (PDB:1VS6) (PUBMED:28373563) VTP51839.1
Alteromonas macleodii MIT1002 2702 0.001495421 0.002240648 7.60131E-4 0.002779695 K02887 nan Ribosomal protein L20 (RplT) (PDB:1VS6) (PUBMED:30270044) VTP51841.1
Alteromonas macleodii MIT1002 2703 nan Mannose-6-phosphate isomerase, cupin superfamily (ManC) (PDB:1IPJ)!!!Mannose-1-phosphate guanylyltransferase (CpsB) (PDB:2QH5) VTP51843.1
Alteromonas macleodii MIT1002 2704 K03606 nan NDP-sugar epimerase, includes UDP-GlcNAc-inverting 4,6-dehydratase FlaA1 and capsular polysaccharide biosynthesis protein EpsC (FlaA1) (PDB:2GN4)!!!Sugar transferase involved in LPS biosynthesis (colanic, teichoic acid) (WcaJ) (PDB:5W7L) VTP51845.1
Alteromonas macleodii MIT1002 2705 nan Transposase VTP54239.1
Alteromonas macleodii MIT1002 2706 nan VTP55638.1
Alteromonas macleodii MIT1002 2707 nan Arylsulfatase A or related enzyme, AlkP superfamily (AslA) (PDB:1E1Z) VTP55636.1
Alteromonas macleodii MIT1002 2708 9.9825E-5 1.13438E-4 3.42127E-4 3.94763E-5 nan VTP55634.1
Alteromonas macleodii MIT1002 2709 1.0563E-5 2.24463E-5 1.93655E-5 nan Capsular polysaccharide biosynthesis protein VTP55632.1
Alteromonas macleodii MIT1002 2710 0.003658715 0.003361796 0.004706665 0.002480909 nan Polysaccharide pyruvyl transferase family protein WcaK (colanic acid biosynthesis) (WcaK) VTP55630.1
Alteromonas macleodii MIT1002 2711 7.00945E-4 3.98618E-4 3.79502E-4 2.94185E-4 nan Glycosyltransferase involved in cell wall bisynthesis (RfaB) (PDB:2IV7) VTP55628.1
Alteromonas macleodii MIT1002 2712 7.02906E-4 6.12714E-4 8.67603E-4 3.89687E-4 K20444 nan Glycosyltransferase, GT2 family (WcaE) (PDB:2Z86) VTP55626.1
Alteromonas macleodii MIT1002 2713 1.54275E-5 1.64193E-4 2.09373E-5 3.30589E-6 nan VTP55624.1
Alteromonas macleodii MIT1002 2714 4.16917E-4 9.7328E-4 8.63715E-4 8.53756E-5 nan Capsular polysaccharide biosynthesis protein VTP55620.1
Alteromonas macleodii MIT1002 2715 2.294E-4 3.22533E-4 8.2937E-4 1.08818E-4 nan VTP55618.1
Alteromonas macleodii MIT1002 2716 9.90024E-4 0.007829548 0.004598138 0.001633363 nan VTP55616.1
Alteromonas macleodii MIT1002 2717 0.004165578 0.006334036 0.005625684 0.002383037 K20444 nan Glycosyltransferase involved in cell wall bisynthesis (RfaB) (PDB:2IV7)!!!Glycosyltransferase, GT2 family (WcaE) (PDB:2Z86) VTP55614.1
Alteromonas macleodii MIT1002 2718 3.8416E-4 0.00110146 8.40351E-4 9.15382E-5 K00973 dTDP-L-rhamnose biosynthesis dTDP-glucose pyrophosphorylase (RmlA1) (PDB:1FXO) VTP55612.1
Alteromonas macleodii MIT1002 2719 0.001402453 0.001574116 0.001700434 5.36851E-4 K01790 dTDP-L-rhamnose biosynthesis dTDP-4-dehydrorhamnose 3,5-epimerase or related enzyme (RfbC) (PDB:1DZR) VTP55610.1
Alteromonas macleodii MIT1002 2720 1.36926E-4 7.47513E-4 6.98828E-4 1.90174E-4 K00067 dTDP-L-rhamnose biosynthesis dTDP-4-dehydrorhamnose reductase (RfbD) (PDB:1KBZ) VTP55608.1
Alteromonas macleodii MIT1002 2721 0.0020486 0.001496553 0.002952394 4.51897E-5 K01710 dTDP-L-rhamnose biosynthesis dTDP-D-glucose 4,6-dehydratase (RfbB) (PDB:1G1A) VTP55606.1
Alteromonas macleodii MIT1002 2722 0.001347621 0.004997181 0.005011281 0.003056637 K00012 Glucuronate pathway (uronate pathway) UDP-glucose 6-dehydrogenase (Ugd) (PDB:1DLI) VTP55604.1
Alteromonas macleodii MIT1002 2723 0.001517648 2.01405E-4 4.76558E-4 5.53676E-4 nan Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins (OmpA) (PDB:1OAP) VTP55602.1
Alteromonas macleodii MIT1002 2724 K06940 nan Uncharacterized protein YkgJ, contains CxxCxxCC motif (YkgJ) VTP55600.1
Alteromonas macleodii MIT1002 2725 K03717 nan DNA-binding transcriptional regulator, LysR family (LysR) (PDB:2FYI) VTP55598.1
Alteromonas macleodii MIT1002 2726 3.60923E-4 9.02307E-5 8.87013E-5 2.59987E-4 nan ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain (SunT) (PDB:3K8U) VTP55596.1
Alteromonas macleodii MIT1002 2727 3.73522E-4 1.27299E-4 7.4537E-5 2.61298E-4 nan Multidrug resistance efflux pump EmrA (EmrA) (PDB:4TKO) VTP55594.1
Alteromonas macleodii MIT1002 2728 2.82654E-4 6.21962E-5 2.5248E-5 1.20082E-4 nan Outer membrane protein TolC (TolC) (PDB:1EK9) VTP55592.1
Alteromonas macleodii MIT1002 2729 1.85245E-5 nan VTP55590.1
Alteromonas macleodii MIT1002 2730 2.49078E-4 4.91069E-5 8.40385E-5 2.20222E-4 K00666 nan O-succinylbenzoic acid-CoA ligase MenE or related acyl-CoA synthetase (AMP-forming) (MenE/FadK) (PDB:5EY9) (PUBMED:25151136;27455459) VTP55235.1
Alteromonas macleodii MIT1002 2731 nan Ca2+-binding protein, EF-hand superfamily (FRQ1) (PDB:2LHI) VTP55233.1
Alteromonas macleodii MIT1002 2732 K02336 nan DNA polymerase B elongation subunit (PolB) (PDB:6P1H) VTP55231.1
Alteromonas macleodii MIT1002 2733 nan Glyoxylase or a related metal-dependent hydrolase, beta-lactamase superfamily II (GloB) (PDB:1QH3) (PUBMED:25670698) VTP55229.1
Alteromonas macleodii MIT1002 2734 K02482 nan Signal transduction histidine kinase regulating C4-dicarboxylate transport system (PDB:4GCZ) VTP55227.1
Alteromonas macleodii MIT1002 2735 K03410 nan Phosphoaspartate phosphatase CheC, specific for CheY-P (CheC) (PDB:2F9Z) VTP55225.1
Alteromonas macleodii MIT1002 2736 nan DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains (CitB) (PDB:1A04) VTP55223.1
Alteromonas macleodii MIT1002 2737 K00817 Histidine biosynthesis, PRPP => histidine Histidinol-phosphate/aromatic aminotransferase or cobyric acid decarboxylase (HisC) (PDB:4R2N) VTP55221.1
Alteromonas macleodii MIT1002 2738 K07090 nan Sulfite exporter TauE/SafE/YfcA and related permeases, UPF0721 family (TauE) (PUBMED:21183667;22797525) VTP55219.1
Alteromonas macleodii MIT1002 2739 K02014 nan Outer membrane receptor for ferrienterochelin and colicins (FepA) (PDB:2HDF) (PUBMED:16468998) VTP55217.1
Alteromonas macleodii MIT1002 2740 K19338 nan DNA-binding transcriptional regulator, LysR family (LysR) (PDB:2FYI) VTP55215.1
Alteromonas macleodii MIT1002 2741 K18353 Vancomycin resistance, D-Ala-D-Lac type Metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family (ElsH) (PUBMED:15178340) VTP55213.1
Alteromonas macleodii MIT1002 2742 K01115 nan Uncharacterized membrane protein YdjX, related to fungal oxalate transporter, TVP38/TMEM64 family (TVP38) (PUBMED:20889782)!!!Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthase (Cls) (PDB:1BYR) VTP55211.1
Alteromonas macleodii MIT1002 2743 K03406 nan Methyl-accepting chemotaxis protein (MCP) (Tar) (PDB:1QU7)!!!PAS domain (PAS) (PDB:2MWG) VTP55209.1
Alteromonas macleodii MIT1002 2744 2.51671E-5 4.44125E-6 1.7765E-5 K16079 nan Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins (OmpA) (PDB:1OAP) VTP55207.1
Alteromonas macleodii MIT1002 2745 0.003271415 0.00101751 0.004256398 0.003687948 K03782 nan Catalase (peroxidase I) (KatG) (PDB:5SX1) (PUBMED:31337720) VTP55205.1
Alteromonas macleodii MIT1002 2746 nan VTP55203.1
Alteromonas macleodii MIT1002 2747 4.91393E-4 2.20301E-5 5.44633E-5 1.66144E-4 nan Small-conductance mechanosensitive channel MscK (MscK) VTP55201.1
Alteromonas macleodii MIT1002 2748 1.82064E-6 1.82064E-6 K11927 nan Superfamily II DNA and RNA helicase (SrmB) (PDB:3RRM) VTP55199.1
Alteromonas macleodii MIT1002 2749 nan
Alteromonas macleodii MIT1002 2750 1.61666E-4 5.71548E-5 2.36784E-5 1.188E-4 nan Hemolysin-related protein, contains CBS domains, UPF0053 family (TlyC) (PDB:2NQW) VTP55921.1
Alteromonas macleodii MIT1002 2751 5.75776E-5 4.56134E-5 1.5703E-5 1.12164E-5 K03832 nan Periplasmic protein TonB, links inner and outer membranes (TonB) (PDB:1IHR) VTP55919.1
Alteromonas macleodii MIT1002 2752 7.20793E-6 nan VTP55917.1
Alteromonas macleodii MIT1002 2753 nan Plastocyanin (PetE) (PDB:3BQV) VTP55915.1
Alteromonas macleodii MIT1002 2754 9.89444E-6 2.4736E-6 4.94721E-6 1.28628E-4 K14980 nan Signal transduction histidine kinase (BaeS) (PDB:1JOY) VTP55913.1
Alteromonas macleodii MIT1002 2755 3.84003E-6 3.84003E-6 3.45603E-5 nan DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain (OmpR) (PDB:1XHF) VTP55911.1
Alteromonas macleodii MIT1002 2756 9.39131E-5 3.22529E-5 3.22529E-5 K01990 nan ABC-type multidrug transport system, ATPase component (CcmA) (PDB:5DO7) VTP55909.1
Alteromonas macleodii MIT1002 2757 nan ABC-type multidrug transport system, permease component (YadH) VTP55907.1
Alteromonas macleodii MIT1002 2758 3.96111E-6 3.96111E-6 K03439 nan tRNA G46 N7-methylase TrmB (TrmB) (PDB:1YZH) (PUBMED:19373903;16600901) VTP55905.1
Alteromonas macleodii MIT1002 2759 3.6188E-6 nan EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant) (EAL) (PDB:2BAS) VTP55903.1
Alteromonas macleodii MIT1002 2760 4.79556E-5 5.22663E-5 6.95088E-5 4.04121E-6 nan Glutamate or tyrosine decarboxylase or a related PLP-dependent protein (GadA) (PDB:1XEY) VTP55901.1
Alteromonas macleodii MIT1002 2761 1.11863E-4 5.8003E-5 K01918 Pantothenate biosynthesis, valine/L-aspartate => pantothenate Panthothenate synthetase (PanC) (PDB:1DIN) (PUBMED:17968677) VTP55899.1
Alteromonas macleodii MIT1002 2762 2.55372E-4 1.98746E-4 7.1171E-4 3.33094E-4 K00606 Pantothenate biosynthesis, valine/L-aspartate => pantothenate Ketopantoate hydroxymethyltransferase (PanB) (PDB:3VAV) VTP55897.1
Alteromonas macleodii MIT1002 2763 3.46418E-5 K00950 Tetrahydrofolate biosynthesis, GTP => THF 7,8-dihydro-6-hydroxymethylpterin pyrophosphokinase (folate biosynthesis) (FolK) (PDB:1CBK) VTP55895.1
Alteromonas macleodii MIT1002 2764 8.88046E-5 1.53572E-4 9.6817E-5 1.00156E-5 K00970 nan tRNA nucleotidyltransferase/poly(A) polymerase (PcnB) (PDB:3WFR) VTP55893.1
Alteromonas macleodii MIT1002 2765 5.72879E-6 1.14576E-5 K01894 nan Glutamyl- or glutaminyl-tRNA synthetase (GlnS) (PDB:1EUQ) VTP55891.1
Alteromonas macleodii MIT1002 2766 4.91816E-4 0.0058113 0.005842776 0.001844311 K06204 nan RNA polymerase-binding transcription factor DksA (DksA) (PDB:1TJL) VTP55889.1
Alteromonas macleodii MIT1002 2767 3.69482E-6 K06206 nan DNA-binding protein, stimulates sugar fermentation (SfsA) (PDB:4DA2) VTP55887.1
Alteromonas macleodii MIT1002 2768 8.03856E-4 6.68621E-4 9.07513E-4 0.007391217 K07751 nan Leucyl aminopeptidase (PepB) (PDB:3H8E) (PUBMED:19553197;23825549) VTP55885.1
Alteromonas macleodii MIT1002 2769 6.64411E-4 1.70988E-4 nan VTP55883.1
Alteromonas macleodii MIT1002 2770 K05595 nan Small neutral amino acid transporter SnatA, MarC family (MarC) (PUBMED:17954692;12761179) VTP55879.1
Alteromonas macleodii MIT1002 2771 K09891 nan Uncharacterized conserved protein YjaG, DUF416 family (YjaG) (PDB:2Q9R) VTP55877.1
Alteromonas macleodii MIT1002 2772 K08316 nan 16S rRNA G966 N2-methylase RsmD (RsmD) (PDB:2IFT) VTP55875.1
Alteromonas macleodii MIT1002 2773 3.01819E-5 2.25085E-4 2.14343E-4 4.45056E-5 nan Signal recognition particle GTPase FtsY (FtsY) (PDB:4AK9) VTP55873.1
Alteromonas macleodii MIT1002 2774 nan Putative translation regulator, IMPACT (imprinted ancient) protein family (YIH1) (PDB:1VI7) (PUBMED:15126500) VTP50870.1
Alteromonas macleodii MIT1002 2775 nan VTP50871.1
Alteromonas macleodii MIT1002 2776 1.32312E-5 K03406 nan Methyl-accepting chemotaxis protein (MCP) (Tar) (PDB:1QU7)!!!PAS domain (PAS) (PDB:2MWG) VTP50872.1
Alteromonas macleodii MIT1002 2777 2.04504E-6 nan VTP50873.1
Alteromonas macleodii MIT1002 2778 1.65606E-6 K03547 nan DNA repair exonuclease SbcCD nuclease subunit (SbcD) (PDB:6S85) VTP50874.1
Alteromonas macleodii MIT1002 2779 6.82775E-6 4.47335E-6 6.82775E-6 6.35687E-6 K03546 nan DNA repair exonuclease SbcCD ATPase subunit (SbcC) (PDB:3QKR) VTP50875.1
Alteromonas macleodii MIT1002 2780 4.64782E-6 nan C-terminal processing protease CtpA/Prc, contains a PDZ domain (CtpA) (PDB:6IQU) VTP50876.1
Alteromonas macleodii MIT1002 2781 2.16593E-6 K07862 nan Na+/serine and Na+/threonine symporter SstT (SstT) VTP50877.1
Alteromonas macleodii MIT1002 2782 K01479 Histidine degradation, histidine => N-formiminoglutamate => glutamate Arginase/agmatinase family enzyme (SpeB) (PDB:1CEV) VTP50878.1
Alteromonas macleodii MIT1002 2783 K01468 Histidine degradation, histidine => N-formiminoglutamate => glutamate Imidazolonepropionase or related amidohydrolase (HutI) (PDB:3OOQ) VTP50879.1
Alteromonas macleodii MIT1002 2784 K05836 nan DNA-binding transcriptional regulator, GntR family (MngR) (PDB:2WV0) VTP50880.1
Alteromonas macleodii MIT1002 2785 1.82759E-4 3.95893E-4 1.95921E-4 7.32047E-4 K01712 Histidine degradation, histidine => N-formiminoglutamate => glutamate Urocanate hydratase (HutU) (PDB:1UWK) VTP50881.1
Alteromonas macleodii MIT1002 2786 1.61301E-5 9.45558E-6 2.1136E-5 5.08932E-5 K01745 Histidine degradation, histidine => N-formiminoglutamate => glutamate Histidine ammonia-lyase (HutH) (PDB:1B8F) VTP50882.1
Alteromonas macleodii MIT1002 2787 6.54376E-4 5.38711E-5 8.55598E-5 K05805 nan Periplasmic catabolite regulation protein CreA (function unknown) (CreA) VTP50883.1
Alteromonas macleodii MIT1002 2788 1.08479E-4 4.3853E-5 1.17711E-4 9.00141E-5 K07274 nan Outer membrane scaffolding protein for murein synthesis, MipA/OmpV family (OmpV) VTP50884.1
Alteromonas macleodii MIT1002 2789 nan Transposase VTP51620.1
Alteromonas macleodii MIT1002 2790 nan Methionyl-tRNA formyltransferase (Fmt) (PDB:1FMT) VTP50317.1
Alteromonas macleodii MIT1002 2791 nan VTP50318.1
Alteromonas macleodii MIT1002 2792 2.23913E-5 K13638 nan DNA-binding transcriptional regulator, MerR family (SoxR) (PDB:2VZ4) VTP50319.1
Alteromonas macleodii MIT1002 2793 2.3544E-6 8.27571E-4 1.1772E-6 K17686 nan Cation-transporting P-type ATPase (ZntA) (PDB:4BBJ) VTP50320.1
Alteromonas macleodii MIT1002 2794 nan Plastocyanin domain containing protein (PDB:2MRY) VTP50321.1
Alteromonas macleodii MIT1002 2795 nan VTP50322.1
Alteromonas macleodii MIT1002 2796 K21310 nan Protein-S-isoprenylcysteine O-methyltransferase Ste14 (STE14) (PDB:5V7P) VTP50323.1
Alteromonas macleodii MIT1002 2797 9.26783E-5 nan VTP50324.1
Alteromonas macleodii MIT1002 2798 1.83499E-4 nan Copper chaperone CopZ (CopZ) (PDB:1AFI) VTP50325.1
Alteromonas macleodii MIT1002 2799 nan
Alteromonas macleodii MIT1002 2800 nan VTP50326.1
Alteromonas macleodii MIT1002 2801 nan Serine transporter YbeC, amino acid:H+ symporter family (PotE) (PDB:3LRB) VTP50327.1
Alteromonas macleodii MIT1002 2802 5.90973E-5 2.89577E-4 3.54584E-6 1.2765E-4 K07233 nan Uncharacterized conserved protein involved in copper resistance (PcoB) VTP50328.1
Alteromonas macleodii MIT1002 2803 3.34858E-5 2.38283E-4 1.45591E-6 6.47879E-5 nan Multicopper oxidase with three cupredoxin domains (includes cell division protein FtsP and spore coat protein CotA) (SufI) (PDB:2YXV) VTP50329.1
Alteromonas macleodii MIT1002 2804 nan VTP50330.1
Alteromonas macleodii MIT1002 2805 5.24726E-5 1.44752E-5 9.04699E-5 nan Glutaredoxin (GrxC) (PDB:1AAZ) VTP50331.1
Alteromonas macleodii MIT1002 2806 6.99496E-5 6.82842E-5 1.99856E-5 1.02426E-4 nan Uncharacterized conserved protein, DUF305 family (PDB:5FEJ) VTP50332.1
Alteromonas macleodii MIT1002 2807 nan VTP50333.1
Alteromonas macleodii MIT1002 2808 K14059 nan Site-specific recombinase XerC (XerC) VTP50334.1
Alteromonas macleodii MIT1002 2809 nan VTP50335.1
Alteromonas macleodii MIT1002 2810 nan VTP50336.1
Alteromonas macleodii MIT1002 2811 2.95751E-4 6.7037E-5 1.27502E-4 1.97168E-5 K01560 nan FMN and 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB, HAD superfamily (riboflavin biosynthesis) (YigB) (PDB:4JB3) (PUBMED:24123841) VTP50337.1
Alteromonas macleodii MIT1002 2812 3.17593E-5 1.77019E-5 1.10897E-4 4.06102E-5 K00681 nan Gamma-glutamyltranspeptidase (Ggt) (PDB:2Z8I) (PUBMED:16618936) VTP50404.1
Alteromonas macleodii MIT1002 2813 2.85509E-6 2.56958E-5 1.80822E-5 3.56886E-5 K07223 nan Periplasmic deferrochelatase/peroxidase EfeB (EfeB) (PDB:2D3Q) VTP50405.1
Alteromonas macleodii MIT1002 2814 K01768 nan Adenylate cyclase, class 3 (AcyC) (PDB:1AB8) VTP50406.1
Alteromonas macleodii MIT1002 2815 6.48172E-4 6.78448E-4 9.70194E-4 1.53786E-4 K01845 Siroheme biosynthesis, glutamyl-tRNA => siroheme Glutamate-1-semialdehyde aminotransferase (HemL) (PDB:2CFB) VTP50407.1
Alteromonas macleodii MIT1002 2816 2.05273E-4 0.001095078 8.02825E-4 7.95867E-5 K00609 Uridine monophosphate biosynthesis, glutamine (+ PRPP) => UMP Aspartate carbamoyltransferase, catalytic subunit (PyrB) (PDB:1NBE) VTP50408.1
Alteromonas macleodii MIT1002 2817 K18301 Multidrug resistance, efflux pump MexJK-OprM DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA (AcrR) (PDB:2QOP) VTP50409.1
Alteromonas macleodii MIT1002 2818 4.40844E-5 1.50815E-5 2.08821E-5 6.1486E-5 K03585 Multidrug resistance, efflux pump MexAB-OprM Multidrug efflux pump subunit AcrA (membrane-fusion protein) (AcrA) (PDB:1T5E) VTP50410.1
Alteromonas macleodii MIT1002 2819 6.85258E-5 1.59428E-5 7.27214E-6 6.08341E-5 nan Multidrug efflux pump subunit AcrB (AcrB) (PDB:1IWG) VTP50411.1
Alteromonas macleodii MIT1002 2820 3.87387E-6 nan VTP50412.1
Alteromonas macleodii MIT1002 2821 nan Transposase VTP53646.1
Alteromonas macleodii MIT1002 2822 1.92211E-5 1.92211E-5 1.04114E-4 K09912 nan Uncharacterized conserved protein YaiL, DUF2058 family (YaiL) VTP52034.1
Alteromonas macleodii MIT1002 2823 0.001179121 0.00316632 0.003073807 8.77875E-4 K03168 nan DNA topoisomerase IA (TopA) (PDB:1CY0)!!!DNA topoisomerase I, ssDNA-binding Zn-finger and Zn-ribbon domains (YrdD) (PDB:1YUA) VTP52032.1
Alteromonas macleodii MIT1002 2824 3.21383E-4 4.36397E-4 0.001215867 0.001187935 K01484 Arginine succinyltransferase pathway, arginine => glutamate Succinylarginine dihydrolase (AstB) (PDB:1YNF) VTP52030.1
Alteromonas macleodii MIT1002 2825 1.962E-5 8.20115E-5 2.90376E-5 6.82776E-5 K13735 nan VTP52028.1
Alteromonas macleodii MIT1002 2826 1.5703E-5 1.43944E-5 4.02389E-5 nan Na+/H+-dicarboxylate symporter (GltP) (PDB:1XFH) VTP52026.1
Alteromonas macleodii MIT1002 2827 nan Transposase InsO and inactivated derivatives (Tra5) VTP56524.1
Alteromonas macleodii MIT1002 2828 K07746 nan Transcriptional regulator, contains Arc/MetJ-type RHH (ribbon-helix-helix) DNA-binding domain (ParD) (PDB:3KXE) VTP53645.1
Alteromonas macleodii MIT1002 2829 K19092 nan Plasmid stabilization system protein ParE (ParE) (PDB:3KXE) VTP53644.1
Alteromonas macleodii MIT1002 2830 K10914 nan cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases (Crp) (PDB:1FT9) VTP53643.1
Alteromonas macleodii MIT1002 2831 K18622 nan 5-methylthioribulose/5-deoxyribulose/Fuculose 1-phosphate aldolase (methionine salvage, sugar degradation) (AraD) (PDB:1FUA) (PUBMED:31950558) VTP53642.1
Alteromonas macleodii MIT1002 2832 3.37091E-5 8.79367E-6 1.42897E-5 K03473 Pyridoxal-P biosynthesis, erythrose-4P => pyridoxal-P Phosphoglycerate dehydrogenase or related dehydrogenase (SerA) (PDB:3OET) VTP53641.1
Alteromonas macleodii MIT1002 2833 8.1606E-4 0.001280026 6.36544E-4 1.69109E-4 K00133 Threonine biosynthesis, aspartate => homoserine => threonine Aspartate-semialdehyde dehydrogenase (Asd) (PDB:1BRM) VTP53640.1
Alteromonas macleodii MIT1002 2834 2.66313E-5 2.03756E-5 1.96607E-5 5.925E-5 K08086 nan Type IV pilus assembly protein FimV (FimV)!!!Midasin, AAA ATPase with  vWA domain, involved in ribosome maturation (MDN1) (PDB:6HYP) VTP53639.1
Alteromonas macleodii MIT1002 2835 K02358 nan Translation elongation factor EF-Tu, a GTPase (TufA) (PDB:1EFU) VTP55964.1
Alteromonas macleodii MIT1002 2836 K03525 Coenzyme A biosynthesis, pantothenate => CoA Pantothenate kinase type III (CoaX) (PDB:2F9T) VTP55574.1
Alteromonas macleodii MIT1002 2837 2.681E-5 3.66403E-5 2.4129E-5 K03524 nan Biotin-(acetyl-CoA carboxylase) ligase (BirA2) (PDB:1BIA) (PUBMED:32188788)!!!Biotin operon repressor (BirA) (PDB:1BIA) VTP55576.1
Alteromonas macleodii MIT1002 2838 2.56375E-6 1.0255E-5 K00075 nan UDP-N-acetylenolpyruvoylglucosamine reductase (MurB) (PDB:2MBR) VTP55578.1
Alteromonas macleodii MIT1002 2839 4.32384E-4 2.85822E-4 1.17361E-4 0.002278437 K03406 nan Methyl-accepting chemotaxis protein (MCP) (Tar) (PDB:1QU7) VTP55580.1
Alteromonas macleodii MIT1002 2840 nan VTP55582.1
Alteromonas macleodii MIT1002 2841 nan VTP55584.1
Alteromonas macleodii MIT1002 2842 0.005212717 0.023113448 0.033968434 0.034612425 K03545 nan FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) (Tig) (PDB:5OWI) VTP54078.1
Alteromonas macleodii MIT1002 2843 0.001460002 0.003823214 0.002236987 0.001853404 K01358 nan ATP-dependent protease ClpP, protease subunit (ClpP) (PDB:1TG6) VTP54076.1
Alteromonas macleodii MIT1002 2844 2.56482E-4 0.002398903 0.002082967 2.09472E-4 K03544 nan ATP-dependent protease Clp, ATPase subunit ClpX (ClpX) (PDB:3HTE) VTP54074.1
Alteromonas macleodii MIT1002 2845 nan VTP51152.1
Alteromonas macleodii MIT1002 2846 nan
Alteromonas macleodii MIT1002 2847 4.62496E-4 0.002393729 0.002088732 5.74682E-4 K01885 Heme biosynthesis, plants and bacteria, glutamate => heme Glutamyl- or glutaminyl-tRNA synthetase (GlnS) (PDB:1EUQ) VTP51462.1
Alteromonas macleodii MIT1002 2848 nan Protein N-acetyltransferase, RimJ/RimL family (RimL) (PDB:1S7F) VTP53807.1
Alteromonas macleodii MIT1002 2849 K07341 nan Prophage maintenance system killer protein (Doc) VTP53805.1
Alteromonas macleodii MIT1002 2850 nan Site-specific recombinase XerC (XerC) VTP53801.1
Alteromonas macleodii MIT1002 2851 nan Transposase VTP53646.1
Alteromonas macleodii MIT1002 2852 K00986 nan Retron-type reverse transcriptase (YkfC) VTP50550.1
Alteromonas macleodii MIT1002 2853 K07486 nan Transposase VTP54750.1
Alteromonas macleodii MIT1002 2854 K07499 nan CRISPR-associated protein Csa3, CARF domain (Csa3) (PDB:2WTE) (PUBMED:21093452) VTP55588.1
Alteromonas macleodii MIT1002 2855 K02406 nan Flagellin and related hook-associated protein FlgL (FlgL) (PDB:1IO1) VTP51027.1
Alteromonas macleodii MIT1002 2856 K02406 nan Flagellin and related hook-associated protein FlgL (FlgL) (PDB:1IO1) VTP51028.1
Alteromonas macleodii MIT1002 2857 K07497 nan Transposase InsO and inactivated derivatives (Tra5)!!!Transposase InsE and inactivated derivatives (InsE) (PDB:2JN6) (PUBMED:23818957) VTP54492.1
Alteromonas macleodii MIT1002 2858 K07483 nan Transposase InsE and inactivated derivatives (InsE) (PDB:2JN6) (PUBMED:23818957) VTP54494.1
Alteromonas macleodii MIT1002 2859 6.23975E-5 4.3533E-6 4.3533E-6 nan VTP50549.1
Alteromonas macleodii MIT1002 2865 K18676 nan BadF-type ATPase, related to human N-acetylglucosamine kinase (BadF) (PUBMED:17954692;12761179;12761179) VTP50886.1
Alteromonas macleodii MIT1002 2866 1.50418E-5 6.94237E-6 3.77974E-5 2.89266E-5 K01443 nan N-acetylglucosamine-6-phosphate deacetylase (NagA) (PDB:1O12) VTP50887.1
Alteromonas macleodii MIT1002 2867 3.93427E-4 5.50213E-4 1.81132E-4 2.11808E-4 nan VTP50888.1
Alteromonas macleodii MIT1002 2868 1.65918E-6 1.10612E-6 2.26755E-5 1.65918E-6 K06158 nan ATPase components of ABC transporters with duplicated ATPase domains (Uup) (PDB:5ZXD) VTP50889.1
Alteromonas macleodii MIT1002 2869 nan VTP50890.1
Alteromonas macleodii MIT1002 2870 nan Predicted double-glycine leader peptidase, C39-like (CLD) domain (C39G) (PUBMED:27279651) VTP50891.1
Alteromonas macleodii MIT1002 2871 nan Small-conductance mechanosensitive channel MscK (MscK) VTP50892.1
Alteromonas macleodii MIT1002 2872 0.002458545 2.67033E-4 5.96988E-4 0.010644489 nan VTP50893.1
Alteromonas macleodii MIT1002 2873 nan VTP50894.1
Alteromonas macleodii MIT1002 2874 0.001548564 1.11595E-5 7.66285E-4 0.014637338 K16089 nan Outer membrane receptor for ferrienterochelin and colicins (FepA) (PDB:2HDF) (PUBMED:16468998) VTP50895.1
Alteromonas macleodii MIT1002 2875 2.45385E-4 0.006034135 1.13899E-4 9.29615E-5 K01993 nan Multidrug resistance efflux pump EmrA (EmrA) (PDB:4TKO) VTP50896.1
Alteromonas macleodii MIT1002 2876 3.86535E-6 9.91463E-4 K13926 nan ABC-type multidrug transport system, permease component (YadH)!!!ABC-type multidrug transport system, ATPase component (CcmA) (PDB:5DO7) VTP50897.1
Alteromonas macleodii MIT1002 2877 1.72887E-5 K01992 nan ABC-type multidrug transport system, permease component (YadH) VTP50898.1
Alteromonas macleodii MIT1002 2878 nan VTP50899.1
Alteromonas macleodii MIT1002 2879 nan Predicted arabinose efflux permease AraJ, MFS family (AraJ) (PDB:4LDS) VTP50900.1
Alteromonas macleodii MIT1002 2880 6.23325E-6 2.3974E-6 nan Uncharacterized secreted protein, contains LVIVD repeats, choice-of-anchor domain VTP50901.1
Alteromonas macleodii MIT1002 2881 2.39728E-5 4.08628E-5 9.97053E-5 nan VTP50902.1
Alteromonas macleodii MIT1002 2882 K00428 nan Cytochrome c peroxidase (MauG) (PDB:1EB7) VTP50903.1
Alteromonas macleodii MIT1002 2883 2.31271E-4 7.26083E-5 2.09757E-4 nan VTP50904.1
Alteromonas macleodii MIT1002 2884 3.2123E-5 3.61384E-5 4.01538E-6 nan VTP50905.1
Alteromonas macleodii MIT1002 2885 nan VTP50906.1
Alteromonas macleodii MIT1002 2886 nan DNA-binding response regulator, LytR/AlgR family (LytT) (PDB:3BS1) VTP50907.1
Alteromonas macleodii MIT1002 2887 K06518 nan Putative effector of murein hydrolase LrgA, UPF0299 family (YohJ) VTP50908.1
Alteromonas macleodii MIT1002 2888 1.49045E-5 nan Putative effector of murein hydrolase (LrgB) VTP50909.1
Alteromonas macleodii MIT1002 2889 2.6567E-6 1.06268E-5 K03410 nan Phosphoaspartate phosphatase CheC, specific for CheY-P (CheC) (PDB:2F9Z)!!!Two-component response regulator, YesN/AraC family, consists of REC and AraC-type DNA-binding domains (YesN) VTP50910.1
Alteromonas macleodii MIT1002 2890 nan GGDEF domain, diguanylate cyclase (c-di-GMP synthetase) or its enzymatically inactive variants (GGDEF) (PDB:6D9M) VTP50911.1
Alteromonas macleodii MIT1002 2891 1.48542E-5 7.20429E-5 nan Uncharacterized secreted protein, contains LVIVD repeats, choice-of-anchor domain VTP50912.1
Alteromonas macleodii MIT1002 2892 nan Uncharacterized secreted protein, contains LVIVD repeats, choice-of-anchor domain VTP50913.1
Alteromonas macleodii MIT1002 2893 nan VTP50914.1
Alteromonas macleodii MIT1002 2894 9.28092E-6 K02495 Heme biosynthesis, plants and bacteria, glutamate => heme Coproporphyrinogen-III oxidase HemN  (oxygen-independent) or related Fe-S oxidoreductase (HemN) (PDB:1OLT) VTP50915.1
Alteromonas macleodii MIT1002 2895 2.85794E-5 5.01239E-4 3.76662E-4 1.75874E-4 K02428 nan Inosine/xanthosine triphosphate pyrophosphatase, all-alpha NTP-PPase family (RdgB) (PDB:1B78) VTP50916.1
Alteromonas macleodii MIT1002 2896 3.52753E-4 6.56652E-4 9.35405E-4 4.41839E-5 K05590 nan Superfamily II DNA and RNA helicase (SrmB) (PDB:3RRM) VTP50917.1
Alteromonas macleodii MIT1002 2897 5.60821E-6 2.24328E-6 2.24328E-6 K00974 nan tRNA nucleotidyltransferase/poly(A) polymerase (PcnB) (PDB:3WFR) VTP50918.1
Alteromonas macleodii MIT1002 2898 1.78969E-4 3.48264E-5 3.67611E-5 4.64352E-5 K02450 nan Type II secretory pathway ATPase component GspA/ExeA/MshM (ExeA) (PUBMED:21378198) VTP50919.1
Alteromonas macleodii MIT1002 2899 1.99076E-5 5.14852E-6 5.14852E-6 K02451 nan Type II secretory pathway ATPase component GspA/ExeA/MshM (ExeA) (PUBMED:21378198) VTP50920.1
Alteromonas macleodii MIT1002 2900 1.87805E-5 3.60879E-4 1.47298E-4 3.53515E-5 nan HD-GYP domain, c-di-GMP phosphodiesterase class II (or its inactivated variant) (HDGYP) (PDB:5Z7C) (PUBMED:23475961) VTP50921.1
Alteromonas macleodii MIT1002 2901 6.13953E-4 6.02286E-4 0.001696027 1.09374E-4 K01704 Isoleucine biosynthesis, pyruvate => 2-oxobutanoate 3-isopropylmalate dehydratase small subunit (LeuD) (PDB:3Q3W) VTP50922.1
Alteromonas macleodii MIT1002 2902 0.00461259 0.009787522 0.015469443 0.006458444 K01703 Isoleucine biosynthesis, pyruvate => 2-oxobutanoate Homoaconitase/3-isopropylmalate dehydratase large subunit (LeuC) (PDB:4KP1) VTP50923.1
Alteromonas macleodii MIT1002 2903 0.00775851 0.007482252 0.01521185 0.007522807 K00052 Isoleucine biosynthesis, pyruvate => 2-oxobutanoate Isocitrate/isopropylmalate dehydrogenase (LeuB) (PDB:1GC9) VTP50924.1
Alteromonas macleodii MIT1002 2904 0.005372217 0.008788026 0.013015993 0.008886016 K01649 Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate Isopropylmalate/homocitrate/citramalate synthases (LeuA) (PDB:4JN6) VTP50925.1
Alteromonas macleodii MIT1002 2905 nan VTP50926.1
Alteromonas macleodii MIT1002 2906 0.010604216 0.027226986 0.041232105 0.021360448 K01689 Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate Enolase (Eno) (PDB:1E9I) VTP50927.1
Alteromonas macleodii MIT1002 2907 0.001401914 0.003927193 0.005706441 3.6033E-4 K01937 Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP CTP synthase (UTP-ammonia lyase) (PyrG) (PDB:1S1M) VTP50928.1
Alteromonas macleodii MIT1002 2908 1.80075E-5 2.48437E-4 2.25761E-4 3.25136E-5 K03555 nan DNA mismatch repair ATPase MutS (MutS) (PDB:1E3M) VTP50929.1
Alteromonas macleodii MIT1002 2909 1.96507E-5 K03743 nan Nicotinamide mononucleotide (NMN) deamidase PncC (PncC) (PDB:2A9S) VTP50930.1
Alteromonas macleodii MIT1002 2910 5.48341E-4 0.001422654 0.002383726 0.001805483 K03553 nan RecA/RadA recombinase (RecA) (PDB:1B22) VTP50931.1
Alteromonas macleodii MIT1002 2911 4.90685E-4 5.7336E-4 4.4022E-4 2.91512E-4 K09697 nan ABC-type multidrug transport system, ATPase component (CcmA) (PDB:5DO7) VTP50932.1
Alteromonas macleodii MIT1002 2912 5.00813E-5 1.91487E-5 5.52367E-6 1.98852E-5 K09696 nan ABC-type Na+ efflux pump, permease component NatB (NatB) VTP50933.1
Alteromonas macleodii MIT1002 2913 K04061 nan Type III secretion system substrate exporter, FlhB-like (YlqH) VTP50934.1
Alteromonas macleodii MIT1002 2914 nan VTP50935.1
Alteromonas macleodii MIT1002 2915 1.69926E-5 4.24815E-6 3.82334E-5 K02193 nan ABC-type transport system involved in cytochrome c biogenesis, ATPase component (CcmA) VTP50936.1
Alteromonas macleodii MIT1002 2916 K02194 nan ABC-type transport system involved in cytochrome c biogenesis, permease component (CcmB) VTP50937.1
Alteromonas macleodii MIT1002 2917 5.34976E-5 4.84823E-5 K02195 nan ABC-type transport system involved in cytochrome c biogenesis, permease component (CcmC) VTP50938.1
Alteromonas macleodii MIT1002 2918 K02196 nan Heme exporter protein D (CcmD) VTP50939.1
Alteromonas macleodii MIT1002 2919 2.1448E-5 8.57919E-5 K02197 nan Cytochrome c biogenesis protein CcmE (CcmE) (PDB:1J6Q) VTP50940.1
Alteromonas macleodii MIT1002 2920 7.91645E-5 1.07407E-4 4.96383E-5 4.62149E-5 K02198 nan Cytochrome c biogenesis protein CcmF (CcmF) VTP50941.1
Alteromonas macleodii MIT1002 2921 3.23315E-4 9.68688E-5 5.40956E-5 6.03857E-5 K02199 nan Thiol-disulfide isomerase or thioredoxin (TrxA) (PDB:1XFL) VTP50942.1
Alteromonas macleodii MIT1002 2922 2.15796E-5 2.15796E-5 5.39489E-6 5.39489E-6 K02200 nan Cytochrome c-type biogenesis protein CcmH/NrfF (NrfF) (PDB:2HL7) VTP50943.1
Alteromonas macleodii MIT1002 2923 2.26565E-4 2.60852E-4 8.94159E-5 1.58327E-4 nan Cytochrome c-type biogenesis protein CcmH/NrfG (NrfG) VTP50944.1
Alteromonas macleodii MIT1002 2924 3.1926E-4 1.68965E-4 1.36293E-4 2.91256E-4 K04754 nan Lipoprotein subunit MlaA of the ABC-type intermembrane phospholipid transporter Mla (MlaA) (PDB:5NUQ) VTP50945.1
Alteromonas macleodii MIT1002 2925 7.25047E-4 0.001755286 0.001584585 3.01313E-4 K01784 Galactose degradation, Leloir pathway, galactose => alpha-D-glucose-1P UDP-glucose 4-epimerase (GalE) (PDB:1A9Y) VTP50946.1
Alteromonas macleodii MIT1002 2926 1.41927E-4 9.84798E-6 4.3447E-5 K03305 nan Dipeptide/tripeptide permease (PTR2) (PDB:2XUT) VTP50948.1
Alteromonas macleodii MIT1002 2927 1.47349E-4 7.95845E-5 2.83667E-5 8.51001E-5 K10107 nan Capsule polysaccharide export protein KpsE/RkpR (KpsE) VTP50949.1
Alteromonas macleodii MIT1002 2928 1.5703E-5 4.7109E-5 K09689 nan ABC-type polysaccharide/polyol phosphate transport system, ATPase component (TagH) (PDB:6JBH) VTP50950.1
Alteromonas macleodii MIT1002 2929 K09688 nan ABC-type polysaccharide/teichoic acid/polyol phosphate export permease (TagG) (PDB:6JBH) VTP50951.1
Alteromonas macleodii MIT1002 2930 0.002234458 0.001356052 0.001013435 0.001667915 K01991 nan Periplasmic protein Wza involved in polysaccharide export, contains SLBB domain of the beta-grasp fold (Wza) (PDB:2J58) (PUBMED:17250770) VTP50952.1
Alteromonas macleodii MIT1002 2931 7.86101E-4 6.50643E-4 4.19698E-4 6.029E-4 nan VTP50953.1
Alteromonas macleodii MIT1002 2932 K02851 nan UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase (Rfe) (PDB:4J72) VTP50954.1
Alteromonas macleodii MIT1002 2933 2.09373E-5 1.28845E-5 1.28845E-5 nan Glycosyltransferase involved in cell wall bisynthesis (WcaA) (PDB:5MLZ) VTP50955.1
Alteromonas macleodii MIT1002 2934 2.9509E-6 K12990 nan Glycosyltransferase, GT2 family (WcaE) (PDB:2Z86) VTP50956.1
Alteromonas macleodii MIT1002 2935 5.5565E-4 0.003570764 0.004481714 8.00905E-4 K00963 Ascorbate biosynthesis, animals, glucose-1P => ascorbate UTP-glucose-1-phosphate uridylyltransferase (GalU) (PDB:2E3D) VTP50957.1
Alteromonas macleodii MIT1002 2936 K02237 nan DNA uptake protein ComE or related DNA-binding protein (ComEA) (PDB:2DUY) VTP50958.1
Alteromonas macleodii MIT1002 2937 4.91746E-4 0.002694977 0.00228373 0.001849297 K00030 Citrate cycle (TCA cycle, Krebs cycle) Isocitrate/isopropylmalate dehydrogenase (LeuB) (PDB:1GC9) VTP50959.1
Alteromonas macleodii MIT1002 2938 1.64061E-6 nan VTP50960.1
Alteromonas macleodii MIT1002 2939 2.86031E-4 6.38251E-5 6.38251E-5 1.77292E-4 nan Outer membrane protein assembly factor BamE, lipoprotein component of the BamABCDE complex (BamE) (PDB:2KM7) VTP50961.1
Alteromonas macleodii MIT1002 2940 1.07177E-4 4.37101E-4 1.60766E-4 2.80855E-5 K06966 nan Nucleotide monophosphate nucleosidase PpnN/YdgH, Lonely Guy (LOG) family (PpnN) (PDB:2PMB) (PUBMED:25728768;27941785;31023582;31420341) VTP50962.1
Alteromonas macleodii MIT1002 2941 9.61985E-6 1.83909E-4 2.60868E-4 7.55443E-5 K13590 nan GGDEF domain, diguanylate cyclase (c-di-GMP synthetase) or its enzymatically inactive variants (GGDEF) (PDB:6D9M) VTP50963.1
Alteromonas macleodii MIT1002 2942 1.22988E-5 9.53162E-5 1.6501E-4 1.22988E-5 K06879 nan NADPH-dependent 7-cyano-7-deazaguanine reductase QueF, C-terminal domain, T-fold superfamily (QueFC) (PDB:3BP1) (PUBMED:14660578;17384645)!!!NADPH-dependent 7-cyano-7-deazaguanine reductase QueF, N-terminal domain (QueFN) (PDB:3BP1) VTP50964.1
Alteromonas macleodii MIT1002 2943 4.39684E-5 K15723 nan VTP50965.1
Alteromonas macleodii MIT1002 2944 nan VTP50966.1
Alteromonas macleodii MIT1002 2945 0.001061055 2.1318E-4 2.8101E-4 4.10614E-4 nan VTP50967.1
Alteromonas macleodii MIT1002 2946 nan Ribosomal protein S18 acetylase RimI and related acetyltransferases (RimI) (PDB:1GHE) VTP50968.1
Alteromonas macleodii MIT1002 2947 0.001773487 7.69687E-6 K00975 Glycogen biosynthesis, glucose-1P => glycogen/starch Glucose-1-phosphate adenylyltransferase (ADP-glucose pyrophosphorylase) (GlgC) (PDB:5MNI) (PUBMED:27545622) VTP50969.1
Alteromonas macleodii MIT1002 2948 0.010172237 3.46418E-5 K13993 nan Small heat shock protein IbpA, HSP20 family (IbpA) (PDB:1GME) VTP50970.1
Alteromonas macleodii MIT1002 2949 5.71589E-5 3.51747E-5 nan VTP50971.1
Alteromonas macleodii MIT1002 2950 1.00787E-5 2.26771E-5 nan VTP50972.1
Alteromonas macleodii MIT1002 2951 nan Uncharacterized conserved protein YqcC, DUF446 family (YqcC) (PDB:2HGK) VTP50973.1
Alteromonas macleodii MIT1002 2952 8.11225E-6 K06175 nan Pseudouridine synthase RluA, 23S rRNA- or tRNA-specific (RluA) (PDB:2I82) VTP50974.1
Alteromonas macleodii MIT1002 2953 K06205 nan Flavodoxin (FldA) (PDB:1AG9) VTP50975.1
Alteromonas macleodii MIT1002 2954 0.002829594 0.002516146 0.012298306 0.001466682 K00674 Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine Tetrahydrodipicolinate N-succinyltransferase (DapD) (PDB:3BXY) VTP50976.1
Alteromonas macleodii MIT1002 2955 1.44404E-5 4.96947E-4 5.39438E-4 9.95887E-6 K00990 nan UTP:GlnB (protein PII) uridylyltransferase (GlnD) VTP50977.1
Alteromonas macleodii MIT1002 2956 6.32878E-5 6.36209E-4 3.76396E-4 8.66045E-5 K01265 nan Methionine aminopeptidase (Map) (PDB:3J2I) VTP50978.1
Alteromonas macleodii MIT1002 2957 0.03040874 0.023074647 0.039256696 0.18919426 K02967 nan Ribosomal protein S2 (RpsB) (PDB:4V4H) VTP50979.1
Alteromonas macleodii MIT1002 2958 0.007016745 0.013752497 0.03329669 0.009043839 K02357 nan Translation elongation factor EF-Ts (Tsf) (PDB:1EFU) VTP50980.1
Alteromonas macleodii MIT1002 2959 5.65906E-4 7.10672E-4 7.28619E-4 1.61517E-4 K09903 Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP Uridylate kinase (PyrH) (PDB:2BND) VTP50981.1
Alteromonas macleodii MIT1002 2960 6.35363E-4 0.004998926 0.009067783 0.019341327 K02838 nan Ribosome recycling factor (Frr) (PDB:1DD5) VTP50982.1
Alteromonas macleodii MIT1002 2961 1.40925E-4 1.35287E-5 3.38218E-6 K00806 nan Undecaprenyl pyrophosphate synthase (UppS) (PDB:1X07) VTP50983.1
Alteromonas macleodii MIT1002 2962 K00981 Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE CDP-diglyceride synthetase (CdsA) (PDB:4Q2E) VTP50984.1
Alteromonas macleodii MIT1002 2963 1.44706E-5 3.56199E-5 K00099 C5 isoprenoid biosynthesis, non-mevalonate pathway 1-deoxy-D-xylulose 5-phosphate reductoisomerase (Dxr) (PDB:1JVS) VTP50985.1
Alteromonas macleodii MIT1002 2964 1.06827E-4 3.84316E-5 2.67067E-5 4.88537E-5 K11749 nan Membrane-associated protease RseP, regulator of RpoE activity (RseP) VTP50986.1
Alteromonas macleodii MIT1002 2965 0.004508401 0.002056831 0.001752695 0.005390256 K07277 nan Outer membrane protein assembly factor BamA (BamA) (PDB:5EKQ) VTP50987.1
Alteromonas macleodii MIT1002 2966 3.18835E-4 6.7881E-4 6.34241E-4 6.29956E-4 K06142 nan Periplasmic chaperone for outer membrane proteins, Skp family (HlpA) (PDB:1SG2) VTP50988.1
Alteromonas macleodii MIT1002 2967 5.15423E-4 1.5148E-4 2.04596E-4 2.50827E-4 K02372 Fatty acid biosynthesis, elongation 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratase (FabA) (PDB:1MKA) VTP50989.1
Alteromonas macleodii MIT1002 2968 9.27458E-5 9.66388E-4 1.95796E-4 1.27096E-4 K00677 KDO2-lipid A biosynthesis, Raetz pathway, LpxL-LpxM type Acyl-[acyl carrier protein]--UDP-N-acetylglucosamine O-acyltransferase (LpxA) (PDB:1J2Z) VTP50990.1
Alteromonas macleodii MIT1002 2969 4.60402E-6 2.30201E-6 2.30201E-6 K00748 KDO2-lipid A biosynthesis, Raetz pathway, LpxL-LpxM type Lipid A disaccharide synthetase (LpxB) (PDB:5W8N) VTP50991.1
Alteromonas macleodii MIT1002 2970 1.8513E-5 K03470 nan Ribonuclease HII (RnhB) (PDB:1EKE) VTP50992.1
Alteromonas macleodii MIT1002 2971 3.25635E-4 4.79816E-4 2.59339E-4 7.69637E-5 K02337 nan DNA polymerase III, alpha subunit (DnaE) (PDB:2HNH) VTP50993.1
Alteromonas macleodii MIT1002 2972 8.43418E-4 0.002523803 0.004576582 0.003055663 K01962 3-Hydroxypropionate bi-cycle Acetyl-CoA carboxylase alpha subunit (AccA) (PDB:2F9I) VTP50994.1
Alteromonas macleodii MIT1002 2973 1.29612E-5 9.30548E-6 K04075 nan tRNA(Ile)-lysidine synthase TilS/MesJ (TilS) (PDB:1NI5) (PUBMED:21435031) VTP50995.1
Alteromonas macleodii MIT1002 2974 1.17641E-5 K13069 nan GGDEF domain, diguanylate cyclase (c-di-GMP synthetase) or its enzymatically inactive variants (GGDEF) (PDB:6D9M) VTP50996.1
Alteromonas macleodii MIT1002 2975 K03455 nan Kef-type K+ transport system, membrane component KefB (KefB) (PDB:4BWZ)!!!Voltage-gated potassium channel Kch (Kch) (PDB:3FWZ) VTP50997.1
Alteromonas macleodii MIT1002 2976 5.71017E-5 3.27384E-4 1.29431E-4 4.22553E-4 nan VTP50998.1
Alteromonas macleodii MIT1002 2977 4.24815E-6 K11991 nan tRNA(Arg) A34 adenosine deaminase TadA (TadA) (PDB:2A8N) VTP50999.1
Alteromonas macleodii MIT1002 2978 4.70753E-6 1.88301E-6 1.88301E-6 K18691 nan Membrane-bound lytic murein transglycosylase MltF (MltF) (PDB:4OWD) VTP51001.1
Alteromonas macleodii MIT1002 2979 0.013150673 0.013375664 0.019136708 0.008349576 K01952 Inosine monophosphate biosynthesis, PRPP + glutamine => IMP Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain (PurL1) (PDB:3VIU)!!!Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain (PurL2) (PDB:1T3T) VTP51002.1
Alteromonas macleodii MIT1002 2980 nan DNA-nicking endonuclease, Smr domain (SmrA) (PDB:3QD7) (PUBMED:12730195) VTP51004.1
Alteromonas macleodii MIT1002 2981 nan VTP51005.1
Alteromonas macleodii MIT1002 2982 2.23758E-6 5.22101E-5 2.23758E-6 8.9503E-6 nan VTP51006.1
Alteromonas macleodii MIT1002 2983 1.76602E-4 2.67634E-4 1.20162E-4 7.56475E-4 K09860 nan Flagellar basal body lipoprotein FlgP, LPP20 family (FlgP) (PUBMED:17041040;19592588;30559113) VTP51007.1
Alteromonas macleodii MIT1002 2984 5.53448E-5 2.45977E-5 K02399 nan Flagellar biosynthesis/type III secretory pathway chaperone FlgN (FlgN) (PDB:2FUP) VTP51008.1
Alteromonas macleodii MIT1002 2985 1.29081E-4 4.57164E-5 8.06757E-5 K02398 nan Negative regulator of flagellin synthesis (anti-sigma28 factor) (FlgM) VTP51009.1
Alteromonas macleodii MIT1002 2986 K02386 nan Flagellar basal body P-ring formation protein FlgA (FlgA) (PDB:3VJP) VTP51010.1
Alteromonas macleodii MIT1002 2987 5.59685E-5 6.77312E-4 3.15889E-4 2.5755E-4 K03415 nan CheY-like REC (receiver) domain, includes chemotaxis protein CheY  and sporulation regulator Spo0F (CheY) (PDB:6QRJ)!!!Chemotaxis signal transduction protein CheW (CheW) (PDB:2QDL) VTP51011.1
Alteromonas macleodii MIT1002 2988 K00575 nan Methylase of chemotaxis methyl-accepting proteins (CheR) (PDB:1AF7) VTP51012.1
Alteromonas macleodii MIT1002 2989 6.10672E-6 K02387 nan Flagellar basal body rod protein FlgB (FlgB) VTP51013.1
Alteromonas macleodii MIT1002 2990 K02388 nan Flagellar basal body rod protein FlgC (FlgC) VTP51014.1
Alteromonas macleodii MIT1002 2991 K02389 nan Flagellar hook-capping protein FlgD (FlgD) (PDB:6IEF) VTP51015.1
Alteromonas macleodii MIT1002 2992 2.41619E-5 1.15087E-4 7.37574E-5 3.75782E-4 K02390 nan Flagellar hook protein FlgE (FlgE) (PDB:3A69) VTP51016.1
Alteromonas macleodii MIT1002 2993 K02391 nan Flagellar basal body rod protein FlgF (FlgF) VTP51017.1
Alteromonas macleodii MIT1002 2994 nan Flagellar basal body rod protein FlgG (FlgG) (PDB:6JZR) VTP51018.1
Alteromonas macleodii MIT1002 2995 nan VTP55341.1
Alteromonas macleodii MIT1002 2996 0.001715115 8.47961E-5 2.64159E-4 5.10871E-4 K07116 nan Acyl-homoserine lactone (AHL) acylase PvdQ (PvdQ) (PDB:4HST) VTP52546.1
Alteromonas macleodii MIT1002 2997 4.79272E-4 2.94807E-4 1.52457E-4 1.71831E-4 K04774 nan Periplasmic serine protease, ClpP class (SppA) (PDB:3BEZ) VTP52548.1
Alteromonas macleodii MIT1002 2998 1.69926E-5 K23777 nan DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA (AcrR) (PDB:2QOP) VTP52550.1
Alteromonas macleodii MIT1002 2999 6.88201E-5 6.98396E-4 3.82334E-5 nan VTP52552.1
Alteromonas macleodii MIT1002 3000 1.32079E-4 1.72629E-4 1.41348E-4 8.6894E-5 nan Putative GTP cyclohydrolase 1 type 2, NIF3 family (NIF3) (PDB:3SY1) (PUBMED:24435797;26385509) VTP52554.1
Alteromonas macleodii MIT1002 3001 K06219 nan 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase (UbiG) (PDB:1BHJ) VTP52556.1
Alteromonas macleodii MIT1002 3002 1.29618E-4 K03778 nan Lactate dehydrogenase or related 2-hydroxyacid dehydrogenase (LdhA) (PDB:1DXY) VTP52558.1
Alteromonas macleodii MIT1002 3003 9.83145E-5 6.82739E-5 K00432 nan Thioredoxin/glutathione peroxidase BtuE, reduces lipid peroxides (BtuE) (PDB:2P5Q) (PUBMED:22931285) VTP52560.1
Alteromonas macleodii MIT1002 3004 1.14831E-4 5.49983E-4 2.22612E-4 9.21675E-5 K00020 nan 3-hydroxyisobutyrate dehydrogenase or related beta-hydroxyacid dehydrogenase (MmsB) (PDB:1I36) VTP52562.1
Alteromonas macleodii MIT1002 3005 1.72088E-5 nan DNA-binding response regulator DpiB of citrate/malate metabolism (CitB) VTP52564.1
Alteromonas macleodii MIT1002 3006 9.93868E-4 9.83945E-4 0.001184703 0.007933772 K00249 beta-Oxidation Acyl-CoA dehydrogenase related to the alkylation response protein AidB (CaiA) (PDB:1BUC) VTP52566.1
Alteromonas macleodii MIT1002 3007 1.20835E-4 1.27852E-4 3.07155E-4 1.83591E-4 nan Enoyl-CoA hydratase/carnithine racemase (CaiD) (PDB:1DCI) VTP52568.1
Alteromonas macleodii MIT1002 3008 9.35497E-6 K00563 nan Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG (UbiE) (PDB:4OBW) VTP52570.1
Alteromonas macleodii MIT1002 3009 1.62141E-4 5.19312E-5 6.57795E-5 7.78966E-5 K07014 nan Periplasmic protein PbgA/YejM, regulator of the LPS biosynthesis, AlkP superfamily (YejM) (PDB:5I5D) (PUBMED:31611279;32291302;32540932) VTP52572.1
Alteromonas macleodii MIT1002 3010 1.22134E-5 K09904 nan Uncharacterized conserved protein YejL, UPF0352 family (YejL) (PDB:2JPQ) VTP52574.1
Alteromonas macleodii MIT1002 3011 2.15063E-5 1.76033E-4 1.21073E-4 2.38959E-5 K06899 nan dsDNA-binding nucleoid-associated protein YejK/NdpA (NdpA) (PUBMED:24043617) VTP52576.1
Alteromonas macleodii MIT1002 3012 9.77077E-5 1.34977E-4 9.46856E-5 4.83501E-5 K01737 Tetrahydrobiopterin biosynthesis, GTP => BH4 6-pyruvoyl-tetrahydropterin synthase (QueD) (PDB:1B66) (PUBMED:14660578;17384645) VTP52578.1
Alteromonas macleodii MIT1002 3013 2.62063E-5 9.8031E-5 1.57238E-4 1.41223E-4 K19304 nan Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain (NlpD) (PDB:2GU1) VTP52580.1
Alteromonas macleodii MIT1002 3014 2.29002E-4 2.61303E-4 4.04008E-4 1.18599E-4 nan Predicted metalloprotease, contains C-terminal PDZ domain (PDB:4FGM) VTP52582.1
Alteromonas macleodii MIT1002 3015 3.09909E-5 nan VTP52584.1
Alteromonas macleodii MIT1002 3016 nan 2-hydroxy fatty acid dioxygenase MPO1 (alpha-oxidation of fatty acids) (MPO1) (PUBMED:30530523) VTP52586.1
Alteromonas macleodii MIT1002 3017 9.85286E-6 1.80636E-5 1.23161E-5 K02478 nan Sensor histidine kinase, LytS/YehU family (LytS) VTP52588.1
Alteromonas macleodii MIT1002 3018 5.2229E-5 1.05524E-4 1.04458E-4 1.18315E-4 K02477 nan DNA-binding response regulator, LytR/AlgR family (LytT) (PDB:3BS1) VTP52590.1
Alteromonas macleodii MIT1002 3019 2.98388E-5 8.68836E-5 2.98388E-5 4.87075E-5 nan 6-phosphofructokinase (PfkA) (PDB:1KZH) VTP52592.1
Alteromonas macleodii MIT1002 3020 nan VTP52594.1
Alteromonas macleodii MIT1002 3021 6.44225E-6 1.61056E-6 nan CheY-like REC (receiver) domain, includes chemotaxis protein CheY  and sporulation regulator Spo0F (CheY) (PDB:6QRJ)!!!Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains (BepA) (PDB:6AIT) (PUBMED:24003122) VTP52596.1
Alteromonas macleodii MIT1002 3022 nan VTP52598.1
Alteromonas macleodii MIT1002 3023 1.06268E-5 1.06268E-5 1.23094E-4 K07146 nan tRNA U34 5'-hydroxylase TrhO, rhodanese family (TrhO) (PDB:4F67) (PUBMED:31253794) VTP52600.1
Alteromonas macleodii MIT1002 3024 9.89288E-5 nan Ca2+-binding protein, EF-hand superfamily (FRQ1) (PDB:2LHI) VTP52602.1
Alteromonas macleodii MIT1002 3025 6.24976E-4 1.45241E-4 2.71116E-4 4.48927E-4 nan VTP52604.1
Alteromonas macleodii MIT1002 3026 1.77199E-4 nan VTP52606.1
Alteromonas macleodii MIT1002 3027 9.79295E-5 1.07256E-4 1.07922E-4 7.99425E-6 K05590 nan Superfamily II DNA and RNA helicase (SrmB) (PDB:3RRM) VTP52608.1
Alteromonas macleodii MIT1002 3028 9.45558E-5 4.01186E-4 2.62054E-4 0.001704028 K01029 nan Acyl-CoA:acetate/3-ketoacid CoA transferase, beta subunit (AtoA) (PDB:5DBN) VTP52610.1
Alteromonas macleodii MIT1002 3029 2.65681E-4 7.8457E-4 6.03707E-4 0.001431311 K01028 nan Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit (AtoD) (PDB:1K6D) VTP52612.1
Alteromonas macleodii MIT1002 3030 K17737 nan DNA-binding transcriptional regulator, LysR family (LysR) (PDB:2FYI) VTP52614.1
Alteromonas macleodii MIT1002 3031 1.60519E-4 8.14229E-5 1.00034E-4 3.15805E-4 nan VTP52616.1
Alteromonas macleodii MIT1002 3032 1.50319E-5 nan K+-sensing histidine kinase KdpD (KdpD) (PDB:2KSF) VTP52618.1
Alteromonas macleodii MIT1002 3033 3.6007E-4 6.68573E-4 0.001311814 6.8531E-4 K13634 nan DNA-binding transcriptional regulator, LysR family (LysR) (PDB:2FYI) VTP52620.1
Alteromonas macleodii MIT1002 3034 1.34695E-5 7.05548E-6 K01752 nan L-serine deaminase (SdaA) (PDB:4RQO) VTP52622.1
Alteromonas macleodii MIT1002 3035 nan 8-oxo-dGTP pyrophosphatase MutT and related house-cleaning NTP pyrophosphohydrolases, NUDIX family (MutT) (PDB:4V14) VTP52624.1
Alteromonas macleodii MIT1002 3036 1.83584E-6 K01665 nan Anthranilate/para-aminobenzoate synthases component I (TrpE) (PDB:1I1Q) VTP52626.1
Alteromonas macleodii MIT1002 3037 0.010292687 0.008656615 0.011101797 0.004868482 K01676 Citrate cycle (TCA cycle, Krebs cycle) Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain (FumA) (PDB:5L2R)!!!Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain (TtdA) (PDB:5L2R) (PUBMED:15613473) VTP52628.1
Alteromonas macleodii MIT1002 3038 5.12452E-6 2.32312E-5 8.19923E-6 1.84483E-5 K09760 nan DNA anti-recombination protein (rearrangement mutator) RmuC (RmuC) VTP52630.1
Alteromonas macleodii MIT1002 3039 0.001387727 7.12281E-4 0.001005181 0.002186769 K14647 nan Serine protease, subtilisin family (AprE) (PDB:1SCJ) VTP52632.1
Alteromonas macleodii MIT1002 3040 0.001900472 0.001283802 0.002999496 0.020549368 K00166 Leucine degradation, leucine => acetoacetate + acetyl-CoA TPP-dependent pyruvate or acetoin dehydrogenase subunit alpha (AcoA) (PDB:1DTW) VTP52634.1
Alteromonas macleodii MIT1002 3041 0.001122884 0.001394361 0.001314091 0.006561434 K00167 Leucine degradation, leucine => acetoacetate + acetyl-CoA Pyruvate/2-oxoglutarate/acetoin dehydrogenase complex, dehydrogenase (E1) component, beta subunit (AcoB) (PDB:2OZL) VTP52636.1
Alteromonas macleodii MIT1002 3042 5.91424E-4 7.24002E-4 5.7278E-4 0.05126432 K09699 Leucine degradation, leucine => acetoacetate + acetyl-CoA Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component (AceF) (PDB:1B5S) VTP52638.1
Alteromonas macleodii MIT1002 3043 1.95749E-5 K07115 nan 23S rRNA A2030 N6-methylase RlmJ (RlmJ) (PDB:2OO3) VTP52640.1
Alteromonas macleodii MIT1002 3044 1.40474E-6 1.40474E-6 nan Serine/threonine protein kinase (SPS1) (PDB:6G4J) VTP52642.1
Alteromonas macleodii MIT1002 3045 3.07471E-6 4.20211E-5 1.19914E-4 1.53736E-5 K10805 nan Acyl-CoA thioesterase (TesB) (PDB:1C8U) VTP52644.1
Alteromonas macleodii MIT1002 3046 6.3173E-5 5.05384E-6 K01726 nan Carbonic anhydrase or acetyltransferase, isoleucine patch superfamily (PaaY) (PDB:6IVE) VTP52646.1
Alteromonas macleodii MIT1002 3047 0.012602694 4.27503E-4 0.005307638 0.005441233 K00830 Photorespiration Archaeal aspartate aminotransferase or a related aminotransferase, includes purine catabolism protein PucG (PucG) (PDB:3NNK) VTP52648.1
Alteromonas macleodii MIT1002 3048 2.0024E-4 1.12183E-4 7.2376E-6 6.26052E-4 K09807 nan Uncharacterized conserved protein YggE, contains kinase-interacting SIMPL domain (YggE) (PDB:4HVZ) VTP52650.1
Alteromonas macleodii MIT1002 3049 9.70605E-5 9.70605E-5 9.3178E-5 K08968 nan GAF domain-containing protein, putative methionine-R-sulfoxide reductase (MsrC) (PDB:1F5M) VTP52652.1
Alteromonas macleodii MIT1002 3050 nan VTP52654.1
Alteromonas macleodii MIT1002 3051 1.82211E-4 5.88885E-4 6.44341E-4 2.23803E-4 K03607 nan sRNA-binding protein ProQ (ProQ) (PDB:1DVO) VTP52656.1
Alteromonas macleodii MIT1002 3052 0.001053086 7.92293E-4 6.90562E-4 2.10143E-4 K03797 nan C-terminal processing protease CtpA/Prc, contains a PDZ domain (CtpA) (PDB:6IQU) VTP52658.1
Alteromonas macleodii MIT1002 3053 7.92223E-6 K03308 nan Na+-dependent transporter, SNF family (YocR) (PDB:2A65) VTP52660.1
Alteromonas macleodii MIT1002 3054 2.56706E-5 1.61187E-5 1.79097E-6 K03315 nan Na+/H+ antiporter NhaC/MleN (NhaC) VTP52662.1
Alteromonas macleodii MIT1002 3055 2.55681E-4 1.79111E-4 5.31601E-4 1.13842E-4 K01256 nan Aminopeptidase N, contains DUF3458 domain (PepN) (PDB:6ATK) (PUBMED:24123841) VTP52664.1
Alteromonas macleodii MIT1002 3056 0.002454794 0.001015674 5.18733E-4 0.007130439 nan VTP52668.1
Alteromonas macleodii MIT1002 3057 0.005633105 0.004649373 0.00196682 0.001857301 nan Flp pilus assembly protein TadD, contains TPR repeats (TadD) (PDB:3WXX) VTP52670.1
Alteromonas macleodii MIT1002 3058 1.55827E-4 1.12869E-4 1.60038E-5 8.59154E-5 nan Uncharacterized conserved protein related to plant photosystem II stability/assembly factor (PDB:2XBG) VTP52672.1
Alteromonas macleodii MIT1002 3059 3.34509E-4 2.35029E-4 4.06271E-5 1.13908E-4 K07003 nan Predicted exporter protein, RND superfamily (MMPL) (PDB:5KHN) VTP52674.1
Alteromonas macleodii MIT1002 3060 0.005193286 0.004855977 0.002913404 0.019275438 K15371 nan NAD-specific glutamate dehydrogenase (Gdh2) VTP52676.1
Alteromonas macleodii MIT1002 3061 7.47244E-4 4.21746E-4 0.001019366 8.99055E-4 K00254 Uridine monophosphate biosynthesis, glutamine (+ PRPP) => UMP Dihydroorotate dehydrogenase (PyrD) (PDB:1GT8) VTP52678.1
Alteromonas macleodii MIT1002 3062 2.14173E-5 4.24146E-5 1.19685E-4 1.07086E-5 K12297 nan 23S rRNA G2445 N2-methylase RlmL (RlmL) (PDB:3V97) (PUBMED:22362734)!!!23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI (RlmK) (PDB:2B78) VTP52680.1
Alteromonas macleodii MIT1002 3063 nan VTP52682.1
Alteromonas macleodii MIT1002 3064 2.178E-5 6.08025E-5 5.53575E-5 3.53925E-5 K15738 nan ATPase components of ABC transporters with duplicated ATPase domains (Uup) (PDB:5ZXD) VTP52684.1
Alteromonas macleodii MIT1002 3065 7.88675E-4 4.9004E-4 5.68207E-4 0.001095827 nan VTP52686.1
Alteromonas macleodii MIT1002 3066 0.001642497 3.84091E-4 K03812 nan Ribosome modulation factor (Rmf) (PDB:2JRM) VTP52688.1
Alteromonas macleodii MIT1002 3067 0.002278516 0.001487767 0.002191602 0.001076203 K01716 Fatty acid biosynthesis, elongation 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratase (FabA) (PDB:1MKA) VTP52690.1
Alteromonas macleodii MIT1002 3068 9.2565E-6 nan VTP52692.1
Alteromonas macleodii MIT1002 3069 K01669 nan Deoxyribodipyrimidine photolyase (PhrB) (PDB:1TEZ) VTP52694.1
Alteromonas macleodii MIT1002 3070 K01669 nan Deoxyribodipyrimidine photolyase (PhrB) (PDB:1TEZ) VTP52696.1
Alteromonas macleodii MIT1002 3071 1.85521E-6 1.05128E-5 8.65761E-6 7.42082E-6 K01669 nan Deoxyribodipyrimidine photolyase (PhrB) (PDB:1TEZ) VTP52698.1
Alteromonas macleodii MIT1002 3072 K06876 nan Uncharacterized conserved protein related to deoxyribodipyrimidine photolyase (PDB:3ZXS) VTP52700.1
Alteromonas macleodii MIT1002 3073 nan Na+-driven multidrug efflux pump, DinF/NorM/MATE family (NorM) (PDB:3VVN) (PUBMED:29915058) VTP52702.1
Alteromonas macleodii MIT1002 3074 K24108 nan Siderophore synthetase component IucA/IucC/SbnC (IucA) (PDB:2W02) (PUBMED:19775248) VTP52704.1
Alteromonas macleodii MIT1002 3075 nan Transposase and inactivated derivatives, TnpA family VTP52706.1
Alteromonas macleodii MIT1002 3076 nan Site-specific recombinase XerD (XerD) (PDB:1A0P) VTP52708.1
Alteromonas macleodii MIT1002 3077 7.97738E-5 4.45249E-5 nan Small-conductance mechanosensitive channel MscK (MscK) VTP52710.1
Alteromonas macleodii MIT1002 3078 K15725 nan Outer membrane protein TolC (TolC) (PDB:1EK9) VTP52712.1
Alteromonas macleodii MIT1002 3079 8.06759E-6 2.0169E-6 8.06759E-6 K15727 nan Multidrug efflux pump subunit AcrA (membrane-fusion protein) (AcrA) (PDB:1T5E) VTP52714.1
Alteromonas macleodii MIT1002 3080 2.12128E-5 3.30589E-6 7.98925E-6 2.14883E-5 K15726 nan Cu/Ag efflux pump CusA (CusA) (PDB:3K07) VTP52716.1
Alteromonas macleodii MIT1002 3081 2.93122E-6 1.9053E-5 2.93122E-6 2.93123E-5 nan Co/Zn/Cd efflux system component (CzcD) VTP52718.1
Alteromonas macleodii MIT1002 3082 K16264 nan Co/Zn/Cd efflux system component (CzcD) VTP52720.1
Alteromonas macleodii MIT1002 3083 K00520 nan Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex or glutathione oxidoreductase (Lpd) (PDB:6QKG)!!!Copper chaperone CopZ (CopZ) (PDB:1AFI) VTP52722.1
Alteromonas macleodii MIT1002 3084 nan VTP52724.1
Alteromonas macleodii MIT1002 3085 2.41584E-5 K08364 nan Copper chaperone CopZ (CopZ) (PDB:1AFI) VTP52726.1
Alteromonas macleodii MIT1002 3086 K08363 nan Copper chaperone CopZ (CopZ) (PDB:1AFI) VTP52728.1
Alteromonas macleodii MIT1002 3087 K08365 nan DNA-binding transcriptional regulator, MerR family (SoxR) (PDB:2VZ4) VTP52730.1
Alteromonas macleodii MIT1002 3088 K24109 nan Siderophore synthetase component IucA/IucC/SbnC (IucA) (PDB:2W02) (PUBMED:19775248) VTP52732.1
Alteromonas macleodii MIT1002 3089 K24110 nan O-succinylbenzoic acid-CoA ligase MenE or related acyl-CoA synthetase (AMP-forming) (MenE/FadK) (PDB:5EY9) (PUBMED:25151136;27455459) VTP52734.1
Alteromonas macleodii MIT1002 3090 K24112 nan Acyl carrier protein (AcpP) (PDB:1ACP) VTP52736.1
Alteromonas macleodii MIT1002 3091 K15652 nan Sugar phosphate isomerase/epimerase (YcjR) (PDB:3KTC) (PUBMED:30742415) VTP52738.1
Alteromonas macleodii MIT1002 3092 nan VTP52740.1
Alteromonas macleodii MIT1002 3093 nan VTP52742.1
Alteromonas macleodii MIT1002 3094 nan PepSY-associated TM region (PiuB) (PUBMED:15124630) VTP52744.1
Alteromonas macleodii MIT1002 3095 nan Uncharacterized membrane protein, DUF1624 family VTP52746.1
Alteromonas macleodii MIT1002 3096 nan Signal transduction histidine kinase (BaeS) (PDB:1JOY) VTP52748.1
Alteromonas macleodii MIT1002 3097 K07497 nan Transposase InsO and inactivated derivatives (Tra5)!!!Transposase InsE and inactivated derivatives (InsE) (PDB:2JN6) (PUBMED:23818957) VTP54492.1
Alteromonas macleodii MIT1002 3098 2.26487E-4 0.002414236 0.001389992 0.00168742 K01338 nan ATP-dependent Lon protease, bacterial type (Lon) (PDB:6ON2) VTP54070.1
Alteromonas macleodii MIT1002 3099 0.003416505 0.06896845 0.02764796 0.05523404 K03530 nan Bacterial nucleoid DNA-binding protein IHF-alpha (HimA) (PDB:1B8Z) VTP54068.1
Alteromonas macleodii MIT1002 3100 0.003972507 0.003466755 0.003538407 0.006387976 K03770 nan Peptidyl-prolyl isomerase, parvulin family (SurA) (PDB:2ZR5) VTP54066.1
Alteromonas macleodii MIT1002 3101 K01439 Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase or related deacylase (ArgE) (PDB:1CG2) VTP54062.1
Alteromonas macleodii MIT1002 3102 nan Putative hemolysin VTP54060.1
Alteromonas macleodii MIT1002 3103 K03269 KDO2-lipid A biosynthesis, Raetz pathway, LpxL-LpxM type UDP-2,3-diacylglucosamine pyrophosphatase LpxH (LpxH) (PDB:5WLY) VTP54058.1
Alteromonas macleodii MIT1002 3104 nan DNA-binding transcriptional regulator, LysR family (LysR) (PDB:2FYI) VTP54056.1
Alteromonas macleodii MIT1002 3105 K03453 nan Predicted Na+-dependent transporter YfeH (YfeH) (PDB:4N7X) (PUBMED:21175741) VTP54054.1
Alteromonas macleodii MIT1002 3106 nan Short-chain dehydrogenase (YqjQ) VTP54052.1
Alteromonas macleodii MIT1002 3107 nan Predicted  kinase, aminoglycoside phosphotransferase (APT) family (YcbJ) VTP54050.1
Alteromonas macleodii MIT1002 3108 1.64149E-5 1.40699E-5 8.79369E-6 K16652 nan Short-chain dehydrogenase (YqjQ) VTP54048.1
Alteromonas macleodii MIT1002 3109 0.009902148 0.03345302 0.10272426 0.56934994 K02968 nan Ribosomal protein S20 (RpsT) (PDB:4V4H) VTP54046.1
Alteromonas macleodii MIT1002 3110 6.7774E-6 K03980 nan Lipid II flippase MurJ/MviN (peptidoglycan biosynthesis) (MurJ) (PDB:5T77) (PUBMED:25013077) VTP54044.1
Alteromonas macleodii MIT1002 3111 1.34108E-5 2.44269E-5 K11753 Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD FAD synthase (RibF) (PDB:1MRZ) VTP54042.1
Alteromonas macleodii MIT1002 3112 0.002297843 0.004853846 0.004308182 0.001985366 K01870 nan Isoleucyl-tRNA synthetase (IleS) (PDB:1FFY) VTP54040.1
Alteromonas macleodii MIT1002 3113 K03101 nan Lipoprotein signal peptidase (LspA) (PDB:5DIR) VTP54038.1
Alteromonas macleodii MIT1002 3114 2.26934E-5 3.404E-5 1.66418E-4 3.68767E-5 K03774 nan Peptidyl-prolyl cis-trans isomerase, FKBP type (SlpA) (PDB:2M2A) VTP54036.1
Alteromonas macleodii MIT1002 3115 7.00132E-6 1.0642E-4 2.70718E-5 6.30119E-5 K03527 C5 isoprenoid biosynthesis, non-mevalonate pathway 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH (IspH) (PDB:3DNF) VTP54034.1
Alteromonas macleodii MIT1002 3116 K02671 nan Type IV pilus assembly protein PilV (PilV) VTP54032.1
Alteromonas macleodii MIT1002 3117 1.2342E-5 K02672 nan Type IV pilus assembly protein PilW (PilW) VTP54030.1
Alteromonas macleodii MIT1002 3118 K02673 nan Type IV pilus assembly protein PilX (PilX) VTP54028.1
Alteromonas macleodii MIT1002 3119 1.23215E-5 5.38256E-5 1.66448E-5 4.21526E-5 K02674 nan Type IV pilus assembly protein, tip-associated adhesin PilY1 (PilY1) (PDB:3HX6) VTP54026.1
Alteromonas macleodii MIT1002 3120 5.71018E-6 2.28407E-5 K02655 nan Type IV pilus assembly protein PilE (PilE) (PDB:2NBA) VTP54024.1
Alteromonas macleodii MIT1002 3121 nan VTP54022.1
Alteromonas macleodii MIT1002 3122 nan VTP54020.1
Alteromonas macleodii MIT1002 3123 K02680 nan Type II secretory pathway, PulJ/GspJ component (PulJ) VTP54018.1
Alteromonas macleodii MIT1002 3124 K08084 nan Type IV pilus assembly protein FimT (FimT) (PUBMED:17322192;28771515) VTP54016.1
Alteromonas macleodii MIT1002 3125 nan Type II secretory pathway, pseudopilin PulG (PulG) (PDB:1AY2) VTP54014.1
Alteromonas macleodii MIT1002 3126 1.94335E-5 K08084 nan Type IV pilus assembly protein FimT (FimT) (PUBMED:17322192;28771515) VTP54012.1
Alteromonas macleodii MIT1002 3127 6.22093E-5 0.00202128 6.69542E-4 1.13875E-4 K01916 NAD biosynthesis, aspartate => quinolinate => NAD NH3-dependent NAD+ synthetase (NadE) (PDB:3HMQ) VTP54010.1
Alteromonas macleodii MIT1002 3128 2.64334E-4 0.002009983 7.17103E-4 2.90505E-4 K04751 nan Nitrogen regulatory protein PII (GlnK) (PDB:2GW8) (PUBMED:24610711) VTP54008.1
Alteromonas macleodii MIT1002 3129 2.0027E-4 3.22253E-4 7.30075E-4 2.02091E-4 K03775 nan Peptidyl-prolyl cis-trans isomerase, FKBP type (SlpA) (PDB:2M2A) VTP54006.1
Alteromonas macleodii MIT1002 3130 2.52692E-6 1.01919E-4 4.21153E-5 2.14788E-5 K06980 nan Folate-binding protein YgfZ, synthesis and repair of Fe-S clusters (YgfZ) (PDB:1NRK) (PUBMED:27941785;22081392) VTP54004.1
Alteromonas macleodii MIT1002 3131 9.53531E-5 9.53531E-5 K09159 nan Succinate dehydrogenase flavin-adding protein, antitoxin component of the CptAB toxin-antitoxin module (SdhE) (PDB:1PUZ) VTP54002.1
Alteromonas macleodii MIT1002 3132 nan VTP54000.1
Alteromonas macleodii MIT1002 3133 1.11184E-5 4.14414E-5 1.07141E-4 nan Acyl-CoA dehydratase PaaZ (MaoC) (PDB:5ZY8) VTP53998.1
Alteromonas macleodii MIT1002 3134 2.97825E-5 5.9565E-4 4.2009E-4 1.41075E-5 K00278 NAD biosynthesis, aspartate => quinolinate => NAD Aspartate oxidase (NadB) (PDB:1KNP) VTP53996.1
Alteromonas macleodii MIT1002 3135 2.33582E-4 9.31273E-5 5.19071E-5 2.22132E-4 K03088 nan DNA-directed RNA polymerase specialized sigma subunit, sigma24 family (RpoE) (PDB:2Q1Z) VTP53994.1
Alteromonas macleodii MIT1002 3136 4.40443E-5 2.74897E-4 4.10068E-5 7.74574E-5 K03597 nan RseA, negative regulator of sigma E activity (RseA) (PDB:1OR7) VTP53992.1
Alteromonas macleodii MIT1002 3137 6.3981E-5 6.6213E-5 2.82707E-5 1.89712E-4 K03598 nan RseB, negative regulator of sigma E activity (RseB) (PDB:2P4B) VTP53990.1
Alteromonas macleodii MIT1002 3138 K03803 nan RseC, positive regulator of sigma E activity (RseC) VTP53988.1
Alteromonas macleodii MIT1002 3139 1.00975E-4 0.001473455 7.17611E-4 1.17641E-4 K03596 nan Translation elongation factor EF-4, membrane-bound GTPase (LepA) (PDB:3DEG) VTP53986.1
Alteromonas macleodii MIT1002 3140 0.003062153 8.81322E-4 9.28221E-4 0.002136863 K03100 nan Signal peptidase I (LepB) (PDB:1B12) (PUBMED:1925027) VTP53984.1
Alteromonas macleodii MIT1002 3141 3.85688E-5 4.88538E-5 1.54275E-5 K03685 nan dsRNA-specific ribonuclease (Rnc) (PDB:1DI2) VTP53983.1
Alteromonas macleodii MIT1002 3142 1.02686E-5 7.18803E-5 4.66755E-5 7.00133E-5 K03595 nan GTPase Era, involved in 16S rRNA processing (Era) (PDB:1EGA) VTP53981.1
Alteromonas macleodii MIT1002 3143 5.66887E-5 4.00969E-5 4.14796E-6 K00275 Pyridoxal-P biosynthesis, erythrose-4P => pyridoxal-P Pyridoxine/pyridoxamine 5'-phosphate oxidase (PdxH) (PDB:1CI0) VTP53979.1
Alteromonas macleodii MIT1002 3144 K03424 nan 3'->5' ssDNA/RNA exonuclease TatD (TatD) (PDB:1J6O) (PUBMED:10747959;25114049) VTP53977.1
Alteromonas macleodii MIT1002 3145 K07186 nan VTP53975.1
Alteromonas macleodii MIT1002 3146 3.9141E-5 5.88854E-4 4.36639E-4 1.26556E-4 K01079 Serine biosynthesis, glycerate-3P => serine Phosphoserine phosphatase (SerB) (PDB:3N28) VTP53973.1
Alteromonas macleodii MIT1002 3147 1.04562E-6 1.18504E-5 1.01077E-5 1.04562E-6 nan VTP53971.1
Alteromonas macleodii MIT1002 3148 2.31921E-5 2.41585E-5 K04485 nan DNA repair protein RadA/Sms, contains AAA+ ATPase domain (Sms) (PDB:5LKM) (PUBMED:30877841) VTP53969.1
Alteromonas macleodii MIT1002 3149 5.86245E-5 nan VTP53967.1
Alteromonas macleodii MIT1002 3150 0.001017214 0.004230998 0.003868688 0.001826866 K06020 nan ATPase components of ABC transporters with duplicated ATPase domains (Uup) (PDB:5ZXD) VTP53965.1
Alteromonas macleodii MIT1002 3151 3.58071E-4 1.79463E-4 4.10201E-5 K02536 KDO2-lipid A biosynthesis, Raetz pathway, LpxL-LpxM type UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase (LpxD) (PDB:6P83) VTP53963.1
Alteromonas macleodii MIT1002 3152 0.004540593 0.006577023 0.009350466 0.005429778 K00600 Photorespiration Glycine/serine hydroxymethyltransferase (GlyA) (PDB:1BJ4) VTP53961.1
Alteromonas macleodii MIT1002 3153 3.83617E-5 4.13126E-5 K07738 nan Transcriptional regulator NrdR, contains Zn-ribbon and ATP-cone domains (NrdR) VTP53959.1
Alteromonas macleodii MIT1002 3154 2.32023E-6 2.78428E-5 5.10451E-5 9.28092E-6 K11752 Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD Riboflavin biosynthesis protein RibD, pyrimidine deaminase domain (RibD1) (PDB:2O7P)!!!Pyrimidine reductase, riboflavin biosynthesis (RibD) (PDB:2O7P) VTP53957.1
Alteromonas macleodii MIT1002 3155 5.46274E-5 1.59885E-5 9.19338E-5 K00793 Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD Riboflavin synthase alpha chain (RibC) (PDB:1I8D) VTP53955.1
Alteromonas macleodii MIT1002 3156 0.001029933 0.002512363 0.002541195 0.001231355 K14652 Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD 3,4-dihydroxy-2-butanone 4-phosphate synthase (RibB) (PDB:1G57)!!!GTP cyclohydrolase II (RibA) (PDB:2BZ0) VTP53953.1
Alteromonas macleodii MIT1002 3157 0.006052885 0.005306077 0.006911715 0.007373804 K00794 Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD 6,7-dimethyl-8-ribityllumazine synthase (Riboflavin synthase beta chain) (RibE) (PDB:1C2Y) VTP53951.1
Alteromonas macleodii MIT1002 3158 1.27718E-4 1.27718E-4 1.42374E-4 2.66951E-4 K03625 nan Transcription antitermination protein NusB (NusB) (PDB:1EY1) (PUBMED:21652641) VTP53949.1
Alteromonas macleodii MIT1002 3159 2.73946E-6 2.00894E-5 6.93997E-5 1.09578E-5 K00946 Thiamine biosynthesis, prokaryotes, AIR (+ DXP/tyrosine) => TMP/TPP Thiamine monophosphate kinase (ThiL) (PDB:5CC8) VTP53947.1
Alteromonas macleodii MIT1002 3160 K01095 nan Phosphatidylglycerophosphatase A (PgpA) (PDB:1RFZ) VTP53945.1
Alteromonas macleodii MIT1002 3161 7.49663E-4 3.67574E-4 3.35733E-4 6.81299E-5 K01662 C5 isoprenoid biosynthesis, non-mevalonate pathway Deoxyxylulose-5-phosphate synthase (Dxs) (PDB:2O1S) VTP53943.1
Alteromonas macleodii MIT1002 3162 4.75334E-5 7.62514E-5 5.64459E-5 2.67375E-5 K00795 C10-C20 isoprenoid biosynthesis, bacteria Geranylgeranyl pyrophosphate synthase (IspA) (PDB:2AZJ) VTP53941.1
Alteromonas macleodii MIT1002 3163 2.13439E-5 5.54941E-5 1.06719E-4 K03602 nan Exonuclease VII small subunit (XseB) (PDB:1VP7) VTP53939.1
Alteromonas macleodii MIT1002 3164 4.47215E-4 7.87838E-5 2.20131E-5 2.25924E-5 K02556 nan Flagellar motor component MotA (MotA) VTP53937.1
Alteromonas macleodii MIT1002 3165 3.22529E-5 2.08695E-5 1.13834E-5 7.11462E-5 K02557 nan Flagellar motor protein MotB (MotB) VTP53935.1
Alteromonas macleodii MIT1002 3166 8.415E-6 2.10375E-6 K00574 nan Cyclopropane fatty-acyl-phospholipid synthase and related methyltransferases (Cfa) (PDB:5Z9O) VTP53933.1
Alteromonas macleodii MIT1002 3167 K09701 nan Uncharacterized conserved protein, DUF1365 family VTP53931.1
Alteromonas macleodii MIT1002 3168 2.08876E-6 2.85463E-5 1.77544E-5 8.87722E-5 K06954 nan Predicted flavin-containing amine oxidase (Ppro0129) VTP53929.1
Alteromonas macleodii MIT1002 3169 2.37932E-4 1.47174E-5 1.05475E-4 7.35873E-4 K14189 nan Short-chain dehydrogenase (YqjQ) VTP53927.1
Alteromonas macleodii MIT1002 3170 nan Ketosteroid isomerase-related protein (YesE) (PDB:1Z1S) VTP53925.1
Alteromonas macleodii MIT1002 3171 K07157 nan Uncharacterized conserved protein, LON_N-like domain, ASCH/PUA-like superfamily (LON/PUA) (PDB:1ZBO) VTP53923.1
Alteromonas macleodii MIT1002 3172 K03088 nan DNA-directed RNA polymerase specialized sigma subunit, sigma24 family (RpoE) (PDB:2Q1Z) VTP53921.1
Alteromonas macleodii MIT1002 3173 K07167 nan Anti-sigma factor ChrR, cupin superfamily (ChrR) (PDB:2Q1Z) VTP53919.1
Alteromonas macleodii MIT1002 3174 9.07064E-4 8.55133E-4 4.5007E-4 9.5034E-4 K05807 nan Outer membrane protein assembly factor BamD, BamD/ComL family (BamD) (PDB:2YHC) VTP53917.1
Alteromonas macleodii MIT1002 3175 6.72301E-5 6.54371E-5 9.8604E-5 2.42028E-5 K06180 nan Pseudouridine synthase RluA, 23S rRNA- or tRNA-specific (RluA) (PDB:2I82) VTP53915.1
Alteromonas macleodii MIT1002 3176 K05810 nan Copper oxidase (laccase) domain (YfiH) (PDB:1RV9) VTP53913.1
Alteromonas macleodii MIT1002 3177 3.73748E-4 0.01710735 0.001787774 7.7534E-4 K03695 nan ATP-dependent Clp protease, ATP-binding subunit ClpA (ClpA) (PDB:1KSF) VTP53911.1
Alteromonas macleodii MIT1002 3178 nan VTP53909.1
Alteromonas macleodii MIT1002 3179 nan VTP53907.1
Alteromonas macleodii MIT1002 3180 nan DNA-binding transcriptional regulator, LysR family (LysR) (PDB:2FYI) VTP53905.1
Alteromonas macleodii MIT1002 3181 K03303 nan L-lactate permease (LldP) VTP53903.1
Alteromonas macleodii MIT1002 3182 2.48146E-5 1.08564E-5 1.13734E-5 2.48146E-5 K03777 nan FAD/FMN-containing lactate dehydrogenase/glycolate oxidase (GlcD) (PDB:1AHU) VTP53901.1
Alteromonas macleodii MIT1002 3183 2.89681E-4 6.88541E-4 3.57253E-4 9.4788E-5 nan Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain (LapB) (PDB:4ZLH) (PUBMED:24187084;24266962)!!!Flp pilus assembly protein TadD, contains TPR repeats (TadD) (PDB:3WXX) VTP53899.1
Alteromonas macleodii MIT1002 3184 nan VTP53897.1
Alteromonas macleodii MIT1002 3185 nan VTP53895.1
Alteromonas macleodii MIT1002 3186 1.64676E-5 1.3174E-5 K17103 Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE Phosphatidylserine synthase (PssA) VTP53893.1
Alteromonas macleodii MIT1002 3187 nan Alkylhydroperoxidase family enzyme, contains CxxC motif (YciW) (PDB:1GU9) VTP51618.1
Alteromonas macleodii MIT1002 3188 1.79463E-5 K16137 nan DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA (AcrR) (PDB:2QOP) VTP51616.1
Alteromonas macleodii MIT1002 3189 nan VTP51614.1
Alteromonas macleodii MIT1002 3190 nan VTP51612.1
Alteromonas macleodii MIT1002 3191 3.52629E-5 1.79987E-4 1.0285E-5 2.20393E-6 K03184 Ubiquinone biosynthesis, prokaryotes, chorismate (+ polyprenyl-PP) => ubiquinol 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases (UbiH) (PDB:1BF3) VTP51610.1
Alteromonas macleodii MIT1002 3192 1.36422E-4 3.6502E-4 7.46018E-4 4.60885E-6 K06168 nan tRNA A37 methylthiotransferase MiaB (MiaB) (PDB:4JC0) (PUBMED:17407324;20472640;20584901) VTP51608.1
Alteromonas macleodii MIT1002 3193 4.76324E-4 6.85581E-4 4.83652E-4 3.28541E-4 K06217 nan Phosphate starvation-inducible protein PhoH, predicted ATPase (PhoH) (PDB:3B85) (PUBMED:8444794;12762842) VTP51606.1
Alteromonas macleodii MIT1002 3194 2.22625E-5 3.61765E-5 K07042 nan ssRNA-specific RNase YbeY, 16S rRNA maturation enzyme (YbeY) (PDB:1XM5) (PUBMED:17407324;23543739) VTP51604.1
Alteromonas macleodii MIT1002 3195 9.25648E-5 2.23184E-4 9.25648E-5 1.31134E-4 K06189 nan Mg2+ and Co2+ transporter CorC, contains CBS pair and CorC-HlyC domains (CorC) (PDB:4HG0) (PUBMED:1779764) VTP51602.1
Alteromonas macleodii MIT1002 3196 1.21553E-4 3.31507E-5 9.88707E-6 3.57679E-5 K03820 nan Apolipoprotein N-acyltransferase (Lnt) (PDB:6NWR) VTP51600.1
Alteromonas macleodii MIT1002 3197 1.96093E-4 9.7911E-4 3.96258E-4 5.23142E-4 nan Imidazolonepropionase or related amidohydrolase (HutI) (PDB:3OOQ) VTP51598.1
Alteromonas macleodii MIT1002 3198 4.76889E-5 0.001605801 5.44723E-4 6.04334E-5 K13788 Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate Phosphotransacetylase (includes Pta, EutD and phosphobutyryltransferase) (Pta) (PDB:1QZT) (PUBMED:28754323)!!!BioD-like N-terminal domain of phosphotransacetylase (PtaN) (PDB:2IOJ) VTP51596.1
Alteromonas macleodii MIT1002 3199 6.63815E-5 4.81825E-4 2.96852E-4 8.9503E-6 K00925 Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate Acetate kinase (AckA) (PDB:3SK3) VTP51594.1
Alteromonas macleodii MIT1002 3200 1.18036E-5 9.44287E-5 2.75417E-5 5.31161E-5 K04080 nan Small heat shock protein IbpA, HSP20 family (IbpA) (PDB:1GME) VTP51592.1
Alteromonas macleodii MIT1002 3201 nan VTP51590.1
Alteromonas macleodii MIT1002 3202 1.96507E-5 7.86027E-5 1.96507E-5 K01515 nan 8-oxo-dGTP pyrophosphatase MutT and related house-cleaning NTP pyrophosphohydrolases, NUDIX family (MutT) (PDB:4V14) VTP51588.1
Alteromonas macleodii MIT1002 3203 6.78084E-4 3.39755E-4 4.89172E-4 5.21054E-4 nan VTP51586.1
Alteromonas macleodii MIT1002 3204 2.48598E-4 0.001346879 0.00116878 5.78824E-4 K03624 nan Transcription elongation factor, GreA/GreB family (GreA) (PDB:1GRJ) VTP51584.1
Alteromonas macleodii MIT1002 3205 0.002682357 0.011011624 0.011401453 0.003646957 K01955 Uridine monophosphate biosynthesis, glutamine (+ PRPP) => UMP Carbamoylphosphate synthase large subunit (CarB) (PDB:1C30) VTP51582.1
Alteromonas macleodii MIT1002 3206 5.59787E-4 9.26713E-4 0.001204517 5.86942E-4 K01956 Uridine monophosphate biosynthesis, glutamine (+ PRPP) => UMP Carbamoylphosphate synthase small subunit (CarA) (PDB:1C30) VTP51580.1
Alteromonas macleodii MIT1002 3207 1.03197E-4 3.88634E-4 5.81854E-4 K00215 Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine 4-hydroxy-tetrahydrodipicolinate reductase (DapB) (PDB:1ARZ) (PUBMED:29684280) VTP51578.1
Alteromonas macleodii MIT1002 3208 K03620 nan Cytochrome b subunit of Ni2+-dependent hydrogenase (CytB) VTP51576.1
Alteromonas macleodii MIT1002 3209 7.38354E-4 1.89096E-4 3.49065E-4 7.55923E-4 K01908 nan Acyl-coenzyme A synthetase/AMP-(fatty) acid ligase (Acs) (PDB:4B2O) (PUBMED:14638756) VTP51574.1
Alteromonas macleodii MIT1002 3210 7.14105E-6 3.74054E-6 3.33248E-5 3.31548E-5 K21023 nan GGDEF domain, diguanylate cyclase (c-di-GMP synthetase) or its enzymatically inactive variants (GGDEF) (PDB:6D9M)!!!EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant) (EAL) (PDB:2BAS)!!!PAS domain (PAS) (PDB:2MWG) VTP51572.1
Alteromonas macleodii MIT1002 3211 1.88436E-5 1.81457E-5 nan VTP51570.1
Alteromonas macleodii MIT1002 3212 nan VTP51568.1
Alteromonas macleodii MIT1002 3213 2.0027E-4 7.51923E-4 2.42145E-4 1.11969E-4 nan Cytochrome c556 (CytC556) (PDB:1E83) VTP51566.1
Alteromonas macleodii MIT1002 3214 0.00106101 0.005573224 0.001713519 5.62468E-4 K03686 nan DnaJ-class molecular chaperone with C-terminal Zn finger domain (DnaJ) (PDB:1BQ0) VTP51564.1
Alteromonas macleodii MIT1002 3215 0.015780672 0.05206074 0.031144947 0.032759856 K04043 nan Molecular chaperone DnaK (HSP70) (DnaK) (PDB:3I33) VTP51562.1
Alteromonas macleodii MIT1002 3216 2.8321E-4 0.001646867 0.001173906 6.15982E-4 K03687 nan Molecular chaperone GrpE (heat shock protein HSP-70) (GrpE) (PDB:1DKG) VTP51560.1
Alteromonas macleodii MIT1002 3217 5.94037E-5 2.53196E-5 1.16859E-5 K07126 nan TPR repeat (TPR) (PDB:1KLX) VTP51558.1
Alteromonas macleodii MIT1002 3218 7.50954E-7 7.50954E-7 K20975 nan Na+/proline symporter (PutP) (PDB:5NVA)!!!Signal transduction histidine kinase (BaeS) (PDB:1JOY) VTP51556.1
Alteromonas macleodii MIT1002 3219 nan DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains (CitB) (PDB:1A04) VTP51554.1
Alteromonas macleodii MIT1002 3220 5.18146E-6 2.10589E-4 4.44125E-6 9.43766E-6 K02014 nan Outer membrane receptor protein, Fe transport (CirA) (PDB:1BY3) VTP51552.1
Alteromonas macleodii MIT1002 3221 K03299 nan H+/gluconate symporter GntT or related permease, GntP/DsdX family (GntT) VTP51550.1
Alteromonas macleodii MIT1002 3222 1.83968E-6 K00641 Methionine biosynthesis, apartate => homoserine => methionine Homoserine O-acetyltransferase (MET2) (PDB:2VAT) VTP51548.1
Alteromonas macleodii MIT1002 3223 2.47013E-6 4.94026E-6 9.88053E-6 6.17533E-6 nan Acetyl xylan esterase AxeA and related esterases, LpqC family (LpqC) (PDB:2D80) (PUBMED:9291122) VTP51546.1
Alteromonas macleodii MIT1002 3224 K00019 Ketone body biosynthesis, acetyl-CoA => acetoacetate/3-hydroxybutyrate/acetone NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family (FabG) (PDB:6L1H) VTP51544.1
Alteromonas macleodii MIT1002 3225 3.26535E-5 3.79692E-5 2.20222E-5 2.27816E-5 nan Alcohol dehydrogenase, class IV (EutG) (PDB:6AHC) VTP51542.1
Alteromonas macleodii MIT1002 3226 2.46447E-5 1.00819E-5 5.60106E-6 1.45628E-5 nan VTP51540.1
Alteromonas macleodii MIT1002 3227 2.71969E-5 2.71969E-5 1.20875E-5 K00858 nan NAD kinase (NadK) (PDB:1SUW) VTP51538.1
Alteromonas macleodii MIT1002 3228 K04047 nan DNA-binding ferritin-like protein (oxidative damage protectant) (Dps) (PDB:1DPS) VTP51536.1
Alteromonas macleodii MIT1002 3229 4.7025E-6 6.27E-6 1.5675E-6 K03631 nan DNA repair ATPase RecN (RecN) (PDB:4AD8) VTP51534.1
Alteromonas macleodii MIT1002 3230 1.86307E-4 2.13632E-4 2.98091E-5 1.37867E-4 K06186 nan Outer membrane protein assembly factor BamE, lipoprotein component of the BamABCDE complex (BamE) (PDB:2KM7) VTP51532.1
Alteromonas macleodii MIT1002 3231 1.21572E-4 2.21531E-4 1.53991E-4 1.0131E-4 K00569 nan VTP51530.1
Alteromonas macleodii MIT1002 3232 2.0546E-6 nan Uncharacterized membrane-anchored protein YjiN, DUF445 family (YjiN) VTP51528.1
Alteromonas macleodii MIT1002 3233 K00537 nan Arsenate reductase or related protein, glutaredoxin family (ArsC) (PDB:1I9D) VTP51526.1
Alteromonas macleodii MIT1002 3234 nan VTP51524.1
Alteromonas macleodii MIT1002 3235 K00661 nan Acetyltransferase, isoleucine patch superfamily (WbbJ) VTP51522.1
Alteromonas macleodii MIT1002 3236 1.3174E-5 3.29351E-6 K06222 nan Aldo/keto reductase, related to diketogulonate reductase (ARA1) (PDB:1Q13) VTP51520.1
Alteromonas macleodii MIT1002 3237 1.34757E-4 2.76401E-4 7.1215E-4 2.9509E-4 K06178 nan Pseudouridylate synthase RsuA, specific for 16S rRNA U516  and 23S rRNA U2605 (RsuA) (PDB:1KSK) VTP51518.1
Alteromonas macleodii MIT1002 3238 K06024 nan Chromosome segregation and condensation protein ScpB (ScpB) (PDB:1T6S) VTP51516.1
Alteromonas macleodii MIT1002 3239 K05896 nan Chromatin segregation and condensation protein Rec8/ScpA/Scc1, kleisin family (ScpA) (PDB:3W6J) VTP51514.1
Alteromonas macleodii MIT1002 3240 4.12648E-5 1.56522E-5 K07566 nan tRNA A37 threonylcarbamoyladenosine synthetase subunit TsaC/SUA5/YrdC (TsaC) (PDB:1HRU) VTP51512.1
Alteromonas macleodii MIT1002 3241 1.2342E-5 2.77695E-5 1.2342E-5 K07053 nan 5'-3' exoribonuclease TrpH/YciV (RNase AM), contains PHP domain (YciV) (PDB:3E0F) (PUBMED:25871919) VTP51510.1
Alteromonas macleodii MIT1002 3242 1.63685E-4 1.78291E-4 2.59378E-4 3.09743E-5 K01657 Tryptophan biosynthesis, chorismate => tryptophan Anthranilate/para-aminobenzoate synthases component I (TrpE) (PDB:1I1Q) VTP51508.1
Alteromonas macleodii MIT1002 3243 2.51248E-5 6.97912E-5 8.51452E-5 1.67499E-5 nan Anthranilate/para-aminobenzoate synthase component II (glutamine amidotransferase) (PabA) (PDB:1I1Q) VTP51506.1
Alteromonas macleodii MIT1002 3244 2.56375E-5 1.88009E-5 7.6058E-5 1.0255E-5 K00766 Tryptophan biosynthesis, chorismate => tryptophan Anthranilate phosphoribosyltransferase, glycosyltransferase domain (TrpD) (PDB:1KGZ) VTP51504.1
Alteromonas macleodii MIT1002 3245 2.83122E-4 5.00621E-4 7.13744E-4 1.27499E-4 K13498 Tryptophan biosynthesis, chorismate => tryptophan Indole-3-glycerol phosphate synthase (TrpC) (PDB:6BMA)!!!Phosphoribosylanthranilate isomerase (TrpF) (PDB:1DL3) VTP51502.1
Alteromonas macleodii MIT1002 3246 1.61852E-4 0.001056882 0.001316441 1.81244E-4 K01696 Tryptophan biosynthesis, chorismate => tryptophan Tryptophan synthase beta chain (TrpB) (PDB:2DH5) VTP51500.1
Alteromonas macleodii MIT1002 3247 5.23044E-5 8.07449E-4 3.74848E-4 4.24974E-4 K01695 Tryptophan biosynthesis, chorismate => tryptophan Tryptophan synthase alpha chain (TrpA) (PDB:6HUL) VTP51498.1
Alteromonas macleodii MIT1002 3248 K09780 nan YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHis (YciI) (PDB:1MWQ) (PUBMED:15779043;23955343) VTP51496.1
Alteromonas macleodii MIT1002 3249 nan General stress protein 26 (function unknown) (YzzA) (PDB:2I02) VTP51494.1
Alteromonas macleodii MIT1002 3250 nan PepSY domain containing protein, regulator of zincin peptidase activity (YkoI) (PDB:4EXR) (PUBMED:15124630) VTP51492.1
Alteromonas macleodii MIT1002 3251 3.92575E-6 K07660 Cationic antimicrobial peptide (CAMP) resistance, protease PgtE DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain (OmpR) (PDB:1XHF) VTP51490.1
Alteromonas macleodii MIT1002 3252 7.94011E-6 K07637 Cationic antimicrobial peptide (CAMP) resistance, protease PgtE Signal transduction histidine kinase (BaeS) (PDB:1JOY) VTP51488.1
Alteromonas macleodii MIT1002 3253 1.4402E-5 K11744 nan Predicted PurR-regulated permease PerM (PerM) VTP51486.1
Alteromonas macleodii MIT1002 3254 1.58574E-4 1.36951E-4 1.17729E-4 6.48714E-5 K07589 nan Dihydroneopterin aldolase (FolB) (PDB:1B9L) VTP51484.1
Alteromonas macleodii MIT1002 3255 K07071 nan NAD dependent epimerase/dehydratase family enzyme (YfcH) (PDB:4B4O) VTP51482.1
Alteromonas macleodii MIT1002 3256 6.90931E-5 5.93224E-6 1.04687E-5 1.01023E-4 K02004 nan Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component (YbbP) VTP51480.1
Alteromonas macleodii MIT1002 3257 7.20171E-5 5.43287E-5 1.57932E-4 K02003 nan Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component (YbbA) VTP51478.1
Alteromonas macleodii MIT1002 3258 4.0338E-6 K10804 nan Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK (TesA) (PDB:1BWP) VTP51476.1
Alteromonas macleodii MIT1002 3259 nan VTP51474.1
Alteromonas macleodii MIT1002 3260 K07491 nan REP element-mobilizing transposase RayT (RAYT) (PDB:4ER8) VTP51472.1
Alteromonas macleodii MIT1002 3261 2.81849E-6 2.81849E-6 2.81849E-6 K05541 nan tRNA-dihydrouridine synthase (DusA) (PDB:1VHN) VTP51470.1
Alteromonas macleodii MIT1002 3262 K06938 nan Predicted Fe-S protein YdhL, DUF1289 family (YdhL) VTP51468.1
Alteromonas macleodii MIT1002 3263 nan VTP51466.1
Alteromonas macleodii MIT1002 3264 1.89897E-5 3.31102E-5 8.37495E-5 4.67438E-5 nan Predicted deacylase (PDB:3CDX) VTP51464.1
Alteromonas macleodii MIT1002 3265 2.59366E-4 1.29401E-4 1.18711E-4 9.53632E-5 K03321 nan Sulfate permease or related transporter, MFS superfamily (SUL1) (PDB:3NY7) VTP50676.1
Alteromonas macleodii MIT1002 3266 K00362 Dissimilatory nitrate reduction, nitrate => ammonia NAD(P)H-nitrite reductase, large subunit (NirB) VTP50677.1
Alteromonas macleodii MIT1002 3267 K00363 Dissimilatory nitrate reduction, nitrate => ammonia Ferredoxin subunit of nitrite reductase or a ring-hydroxylating dioxygenase (NirD) (PDB:1FQT) (PUBMED:23844911) VTP50678.1
Alteromonas macleodii MIT1002 3268 K00372 Assimilatory nitrate reduction, nitrate => ammonia Bacterioferritin-associated ferredoxin (Bfd) (PDB:6E6R)!!!Predicted molibdopterin-dependent oxidoreductase YjgC (YjgC) (PDB:1AA6) VTP50679.1
Alteromonas macleodii MIT1002 3269 K02303 Siroheme biosynthesis, glutamyl-tRNA => siroheme Uroporphyrinogen-III methylase (siroheme synthase) (CysG) (PDB:1PJQ) VTP50680.1
Alteromonas macleodii MIT1002 3270 6.7025E-6 4.46833E-5 1.96607E-5 K00766 Tryptophan biosynthesis, chorismate => tryptophan Anthranilate phosphoribosyltransferase, glycosyltransferase domain (TrpD) (PDB:1KGZ) VTP50681.1
Alteromonas macleodii MIT1002 3271 nan 2',3'-cyclic-nucleotide 2'-phosphodiesterase/5'- or 3'-nucleotidase, 5'-nucleotidase family (UshA) (PDB:1HO5) VTP50682.1
Alteromonas macleodii MIT1002 3272 nan 2',3'-cyclic-nucleotide 2'-phosphodiesterase/5'- or 3'-nucleotidase, 5'-nucleotidase family (UshA) (PDB:1HO5) VTP50683.1
Alteromonas macleodii MIT1002 3273 nan 2',3'-cyclic-nucleotide 2'-phosphodiesterase/5'- or 3'-nucleotidase, 5'-nucleotidase family (UshA) (PDB:1HO5) VTP50684.1
Alteromonas macleodii MIT1002 3274 nan GGDEF domain, diguanylate cyclase (c-di-GMP synthetase) or its enzymatically inactive variants (GGDEF) (PDB:6D9M) VTP50685.1
Alteromonas macleodii MIT1002 3275 7.01352E-4 6.11676E-4 7.6426E-4 0.003377935 K03406 nan Methyl-accepting chemotaxis protein (MCP) (Tar) (PDB:1QU7)!!!PAS domain (PAS) (PDB:2MWG) VTP50686.1
Alteromonas macleodii MIT1002 3276 nan VTP50687.1
Alteromonas macleodii MIT1002 3277 K15576 Nitrate assimilation ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component (TauA) (PDB:2X26) VTP50688.1
Alteromonas macleodii MIT1002 3278 K15577 Nitrate assimilation ABC-type nitrate/sulfonate/bicarbonate transport system, permease component (TauC) VTP50689.1
Alteromonas macleodii MIT1002 3279 K15578 Nitrate assimilation ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component (TauB) VTP50690.1
Alteromonas macleodii MIT1002 3280 2.16593E-6 nan VTP50691.1
Alteromonas macleodii MIT1002 3281 K07023 nan 5'-deoxynucleotidase YfbR and related HD superfamily hydrolases (YfbR) (PDB:2PAQ) VTP50692.1
Alteromonas macleodii MIT1002 3282 0.002162127 0.002483166 0.001856442 0.001459331 K03673 nan Protein thiol-disulfide isomerase DsbC (DsbG) (PDB:2HI7) VTP50693.1
Alteromonas macleodii MIT1002 3283 nan VTP50694.1
Alteromonas macleodii MIT1002 3284 2.45772E-4 1.12288E-4 6.04283E-5 9.15895E-4 K16092 nan Outer membrane cobalamin receptor protein BtuB (BtuB) (PDB:1NQE) VTP50695.1
Alteromonas macleodii MIT1002 3285 2.6892E-6 2.59956E-5 3.67523E-5 2.6892E-6 nan Ser/Thr protein kinase RdoA involved in Cpx stress response, MazF antagonist (SrkA) (PDB:1ZYL) VTP50696.1
Alteromonas macleodii MIT1002 3286 6.77384E-5 2.81422E-4 4.61853E-6 1.84741E-6 K02574 nan Polyferredoxin NapH (NapH) (PUBMED:27322068) VTP50697.1
Alteromonas macleodii MIT1002 3287 nan VTP50698.1
Alteromonas macleodii MIT1002 3288 1.94335E-5 6.07298E-5 nan VTP50699.1
Alteromonas macleodii MIT1002 3289 1.02543E-4 6.15257E-5 2.28595E-4 3.43644E-4 nan Acyl-CoA dehydrogenase related to the alkylation response protein AidB (CaiA) (PDB:1BUC) VTP50700.1
Alteromonas macleodii MIT1002 3290 1.33744E-5 1.33744E-5 2.84206E-5 K18335 nan NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family (FabG) (PDB:6L1H) VTP50701.1
Alteromonas macleodii MIT1002 3291 K07046 nan Predicted metal-dependent hydrolase, TIM-barrel fold VTP50702.1
Alteromonas macleodii MIT1002 3292 0.001635237 6.49482E-4 0.00168285 8.7602E-4 K01684 D-galactonate degradation, De Ley-Doudoroff pathway, D-galactonate => glycerate-3P L-alanine-DL-glutamate epimerase or related enzyme of enolase superfamily (RspA) (PDB:1BKH) VTP50703.1
Alteromonas macleodii MIT1002 3293 6.55215E-5 1.31043E-4 1.11502E-4 1.3794E-5 K18622 nan 5-methylthioribulose/5-deoxyribulose/Fuculose 1-phosphate aldolase (methionine salvage, sugar degradation) (AraD) (PDB:1FUA) (PUBMED:31950558) VTP50704.1
Alteromonas macleodii MIT1002 3294 4.37254E-5 K12152 nan ADP-ribose pyrophosphatase YjhB, NUDIX family (YjhB) (PDB:3GZ5) VTP50705.1
Alteromonas macleodii MIT1002 3295 6.29919E-6 2.43569E-5 1.00787E-5 9.07084E-5 K03585 Multidrug resistance, efflux pump MexAB-OprM Multidrug efflux pump subunit AcrA (membrane-fusion protein) (AcrA) (PDB:1T5E) VTP50706.1
Alteromonas macleodii MIT1002 3296 6.79705E-6 8.4963E-7 6.96697E-5 nan Multidrug efflux pump subunit AcrB (AcrB) (PDB:1IWG) VTP50707.1
Alteromonas macleodii MIT1002 3297 3.28122E-4 nan ABC-type phosphate transport system, periplasmic component (PstS) (PDB:2Q9T) VTP50708.1
Alteromonas macleodii MIT1002 3298 7.44928E-4 5.65675E-4 5.13515E-4 0.02920866 nan VTP50709.1
Alteromonas macleodii MIT1002 3299 0.001756559 8.03776E-4 0.001528152 0.012354377 K03406 nan Methyl-accepting chemotaxis protein (MCP) (Tar) (PDB:1QU7) VTP50710.1
Alteromonas macleodii MIT1002 3300 0.001359415 0.002174872 0.002849054 7.30164E-4 K03086 nan DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) (RpoD) (PDB:1SIG) VTP50711.1
Alteromonas macleodii MIT1002 3301 5.94167E-6 4.01063E-5 2.67375E-5 K02316 nan DNA primase (bacterial type) (DnaG) (PDB:3B39) (PUBMED:28128549) VTP50712.1
Alteromonas macleodii MIT1002 3302 2.37667E-5 1.48542E-5 5.94167E-6 K09117 nan Uncharacterized conserved protein YqeY, may have tRNA amino acid amidase activity (YqeY) (PDB:1NG6) VTP50713.1
Alteromonas macleodii MIT1002 3303 0.012302886 0.003934447 0.006973012 0.20295428 K02970 nan Ribosomal protein S21 (RpsU) (PDB:4V4H) VTP50715.1
Alteromonas macleodii MIT1002 3304 6.36102E-5 3.09455E-5 1.03152E-5 K01409 nan tRNA A37 threonylcarbamoyltransferase TsaD (TsaD) (PDB:3ENO) (PUBMED:23072323;21285948;32385138) VTP50716.1
Alteromonas macleodii MIT1002 3305 2.00769E-6 1.40538E-5 2.20846E-5 8.03075E-6 nan c-di-AMP phosphodiesterase AtaC or nucleotide pyrophosphatase, AlkP superfamily (AtaC) (PDB:1EI6) (PUBMED:32188788) VTP50717.1
Alteromonas macleodii MIT1002 3306 4.39684E-6 1.75873E-5 K08591 nan Phospholipid biosynthesis protein PlsY, probable glycerol-3-phosphate acyltransferase (PlsY) (PDB:5XJ5) (PUBMED:29684280) VTP50718.1
Alteromonas macleodii MIT1002 3307 4.88537E-5 3.00638E-5 K01633 Tetrahydrofolate biosynthesis, GTP => THF Dihydroneopterin aldolase (FolB) (PDB:1B9L) VTP50719.1
Alteromonas macleodii MIT1002 3308 K00950 Tetrahydrofolate biosynthesis, GTP => THF 7,8-dihydro-6-hydroxymethylpterin pyrophosphokinase (folate biosynthesis) (FolK) (PDB:1CBK) VTP50720.1
Alteromonas macleodii MIT1002 3309 1.32236E-5 K06153 nan Undecaprenyl pyrophosphate phosphatase (UppP) (PDB:5OON) VTP50721.1
Alteromonas macleodii MIT1002 3310 4.50408E-4 0.001158191 6.72037E-4 3.50317E-4 K02503 nan Purine nucleoside phosphoramidase/Ap4A hydrolase, histidine triade (HIT) family (HinT) (PDB:1AV5) (PUBMED:20934431) VTP50722.1
Alteromonas macleodii MIT1002 3311 0.008865395 0.0033496 0.003205637 0.007187737 nan VTP50723.1
Alteromonas macleodii MIT1002 3312 3.01558E-4 0.001489864 0.00133803 0.001209921 nan HD-like signal output (HDOD) domain, no enzymatic activity (HDOD) (PDB:1VQR) VTP50724.1
Alteromonas macleodii MIT1002 3313 K05782 nan Predicted benzoate:H+ symporter BenE (BenE) VTP50725.1
Alteromonas macleodii MIT1002 3314 K23779 nan Transcriptional regulator, contains XRE-family HTH domain (HipB) (PDB:1ADR) VTP50726.1
Alteromonas macleodii MIT1002 3315 1.0061E-4 2.02187E-4 2.26372E-4 1.63975E-4 K03554 nan DNA recombination-dependent growth factor RdgC (RdgC) (PDB:2OWL) VTP50727.1
Alteromonas macleodii MIT1002 3316 8.68861E-4 4.94316E-4 3.57736E-4 0.001025141 K02482 nan Signal transduction histidine kinase regulating C4-dicarboxylate transport system (PDB:4GCZ) VTP50728.1
Alteromonas macleodii MIT1002 3317 3.84003E-6 5.76005E-5 1.38241E-4 4.80004E-5 K07657 nan DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain (OmpR) (PDB:1XHF) VTP50729.1
Alteromonas macleodii MIT1002 3318 5.21257E-5 5.07718E-6 5.07718E-6 3.24939E-5 K07636 nan Sensor histidine kinase WalK (WalK) (PDB:4I5S) VTP50730.1
Alteromonas macleodii MIT1002 3319 2.30738E-5 9.40043E-6 1.0255E-5 2.56375E-6 K02040 nan ABC-type phosphate transport system, periplasmic component (PstS) (PDB:2Q9T) VTP50731.1
Alteromonas macleodii MIT1002 3320 nan VTP50732.1
Alteromonas macleodii MIT1002 3321 4.74821E-6 9.49641E-7 nan Uncharacterized conserved protein, PKD repeat domain (PDB:2KZW) VTP50733.1
Alteromonas macleodii MIT1002 3322 1.49552E-5 4.98508E-5 4.65274E-6 9.97013E-6 K02014 nan Outer membrane receptor for ferrienterochelin and colicins (FepA) (PDB:2HDF) (PUBMED:16468998) VTP50734.1
Alteromonas macleodii MIT1002 3323 3.1406E-5 2.21005E-5 8.72388E-6 nan VTP50735.1
Alteromonas macleodii MIT1002 3324 3.48648E-5 2.45345E-5 1.74324E-5 1.64639E-5 K03561 nan Biopolymer transport protein ExbB/TolQ (TolQ) (PDB:5SV0) VTP50736.1
Alteromonas macleodii MIT1002 3325 K03561 nan Biopolymer transport protein ExbB/TolQ (TolQ) (PDB:5SV0) VTP50737.1
Alteromonas macleodii MIT1002 3326 K03559 nan Biopolymer transport protein ExbD (ExbD) (PDB:2JWK) VTP50738.1
Alteromonas macleodii MIT1002 3327 K03832 nan Periplasmic protein TonB, links inner and outer membranes (TonB) (PDB:1IHR) VTP50739.1
Alteromonas macleodii MIT1002 3328 nan Tetratricopeptide (TPR) repeat (TPR) (PDB:3AS4) VTP50740.1
Alteromonas macleodii MIT1002 3329 K07814 nan Response regulator c-di-GMP phosphodiesterase, RpfG family, contains REC and HD-GYP domains (RpfG) VTP50741.1
Alteromonas macleodii MIT1002 3330 nan Signal transduction histidine kinase (BaeS) (PDB:1JOY)!!!CheY-like REC (receiver) domain, includes chemotaxis protein CheY  and sporulation regulator Spo0F (CheY) (PDB:6QRJ)!!!PAS domain (PAS) (PDB:2MWG) VTP50742.1
Alteromonas macleodii MIT1002 3331 6.73845E-6 2.41461E-5 9.54613E-6 1.68461E-6 nan O-succinylbenzoic acid-CoA ligase MenE or related acyl-CoA synthetase (AMP-forming) (MenE/FadK) (PDB:5EY9) (PUBMED:25151136;27455459) VTP50743.1
Alteromonas macleodii MIT1002 3332 nan VTP50744.1
Alteromonas macleodii MIT1002 3333 1.40095E-5 K21430 nan Glucose/arabinose dehydrogenase, beta-propeller fold (YliI) (PDB:1C9U) VTP50745.1
Alteromonas macleodii MIT1002 3334 0.039613497 0.021141144 0.06284658 0.018350687 K01682 Citrate cycle (TCA cycle, Krebs cycle) Aconitase B (AcnB) (PDB:1L5J) VTP50746.1
Alteromonas macleodii MIT1002 3335 K11939 nan Threonine/homoserine efflux transporter RhtA (RhtA) VTP53297.1
Alteromonas macleodii MIT1002 3336 5.90179E-6 nan Predicted transcriptional regulator YdeE, contains AraC-type DNA-binding domain (YdeE) VTP53295.1
Alteromonas macleodii MIT1002 3337 3.69966E-4 5.36048E-4 1.41294E-4 0.002057125 K02014 nan Outer membrane receptor for ferrienterochelin and colicins (FepA) (PDB:2HDF) (PUBMED:16468998) VTP53293.1
Alteromonas macleodii MIT1002 3338 3.10066E-4 3.17691E-5 2.28737E-5 K00549 Methionine biosynthesis, apartate => homoserine => methionine Methionine synthase II (cobalamin-independent) (MetE) (PDB:1T7L) VTP53291.1
Alteromonas macleodii MIT1002 3339 nan VTP53289.1
Alteromonas macleodii MIT1002 3340 1.01077E-5 nan VTP53287.1
Alteromonas macleodii MIT1002 3341 K00817 Histidine biosynthesis, PRPP => histidine Histidinol-phosphate/aromatic aminotransferase or cobyric acid decarboxylase (HisC) (PDB:4R2N) VTP53285.1
Alteromonas macleodii MIT1002 3342 1.57431E-5 5.69752E-5 6.44719E-5 8.99609E-6 nan Uncharacterized conserved protein, related to short-chain dehydrogenases VTP53283.1
Alteromonas macleodii MIT1002 3343 2.15004E-6 K19793 Methanofuran biosynthesis Aspartate/methionine/tyrosine aminotransferase (AspB) (PDB:2O0R) VTP53281.1
Alteromonas macleodii MIT1002 3344 nan Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) (NuoI) (PDB:1B0P) VTP53279.1
Alteromonas macleodii MIT1002 3345 5.93897E-4 K08303 nan 23S rRNA C2501 and tRNA U34 5'-hydroxylation protein RlhA/YrrN/YrrO, U32 peptidase family (RlhA) (PDB:5D88) (PUBMED:31253794;31358606) VTP53277.1
Alteromonas macleodii MIT1002 3346 6.16097E-4 4.19003E-4 1.01064E-4 6.69506E-4 nan Predicted Zn-dependent protease (PDB:2X7M) VTP53275.1
Alteromonas macleodii MIT1002 3347 nan VTP53273.1
Alteromonas macleodii MIT1002 3348 nan Antitoxin component YafN of the YafNO toxin-antitoxin module, PHD/YefM family (StbD) (PDB:2A6Q) VTP53271.1
Alteromonas macleodii MIT1002 3349 K19092 nan Plasmid stabilization system protein ParE (ParE) (PDB:3KXE) VTP53269.1
Alteromonas macleodii MIT1002 3350 3.84908E-5 2.96083E-6 K03566 nan DNA-binding transcriptional regulator, LysR family (LysR) (PDB:2FYI) VTP53267.1
Alteromonas macleodii MIT1002 3351 1.97741E-5 1.04687E-5 K07124 nan NADP-dependent 3-hydroxy acid dehydrogenase YdfG (YdfG) (PDB:3P19) VTP53265.1
Alteromonas macleodii MIT1002 3352 1.04999E-5 2.62498E-6 K00344 nan NADPH:quinone reductase or related Zn-dependent oxidoreductase (Qor) (PDB:2VCY) VTP53263.1
Alteromonas macleodii MIT1002 3353 K00344 nan NADPH:quinone reductase or related Zn-dependent oxidoreductase (Qor) (PDB:2VCY) VTP53261.1
Alteromonas macleodii MIT1002 3354 nan Acyl-CoA thioesterase PaaI, contains HGG motif (PaaI) (PDB:1PSU) VTP53259.1
Alteromonas macleodii MIT1002 3355 9.45556E-6 2.36389E-6 K06987 nan Predicted deacylase (PDB:3CDX) VTP53257.1
Alteromonas macleodii MIT1002 3356 3.43503E-6 1.37401E-5 nan Molybdopterin or thiamine biosynthesis adenylyltransferase (ThiF) (PDB:1ZUD) (PUBMED:32239579) VTP53255.1
Alteromonas macleodii MIT1002 3357 9.42178E-5 4.34449E-4 2.28566E-4 4.7109E-5 K03638 Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor Molybdopterin biosynthesis enzyme MoaB/MogA (MoaB) (PDB:1DI6) (PUBMED:32239579) VTP53253.1
Alteromonas macleodii MIT1002 3358 5.53061E-6 5.53061E-6 K03637 Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor Molybdenum cofactor biosynthesis enzyme MoaC (MoaC) (PDB:1EKR) (PUBMED:32239579) VTP53251.1
Alteromonas macleodii MIT1002 3359 K03636 nan Molybdopterin synthase sulfur carrier subunit MoaD (MoaD) (PDB:1FM0) (PUBMED:32239579) VTP53249.1
Alteromonas macleodii MIT1002 3360 K03635 Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor Molybdopterin synthase catalytic subunit MoaE (MoaE) (PDB:1FM0) (PUBMED:32239579) VTP53247.1
Alteromonas macleodii MIT1002 3361 K02020 nan ABC-type molybdate transport system, periplasmic Mo-binding protein ModA (ModA) (PDB:1AMF) VTP53245.1
Alteromonas macleodii MIT1002 3362 K02018 nan ABC-type molybdate transport system, permease component ModB (ModB) VTP53243.1
Alteromonas macleodii MIT1002 3363 9.93637E-6 8.51688E-6 5.32305E-6 nan ABC-type molybdate transport system, ATPase component ModC (ModC) VTP53241.1
Alteromonas macleodii MIT1002 3364 1.92422E-6 0.002058913 3.20703E-5 K02495 Heme biosynthesis, plants and bacteria, glutamate => heme Coproporphyrinogen-III oxidase HemN  (oxygen-independent) or related Fe-S oxidoreductase (HemN) (PDB:1OLT) VTP53239.1
Alteromonas macleodii MIT1002 3365 nan Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK (TesA) (PDB:1BWP) VTP53237.1
Alteromonas macleodii MIT1002 3366 9.77075E-6 2.47526E-5 3.9083E-6 2.5404E-5 K07396 nan Predicted dithiol-disulfide isomerase, DsbA/YjbH family (virulence, stress resistance) (FrnE) (PDB:6GHB) VTP53235.1
Alteromonas macleodii MIT1002 3367 2.66475E-6 K07402 nan Molybdoenzyme maturation factor PaoD (Mo cofactor insertion), XdhC/CoxF family (XdhC) (PDB:2WE7) (PUBMED:24498065) VTP53233.1
Alteromonas macleodii MIT1002 3368 1.10088E-4 4.32991E-4 3.24576E-5 9.03462E-5 K02014 nan Outer membrane receptor protein, Fe transport (CirA) (PDB:1BY3) VTP53231.1
Alteromonas macleodii MIT1002 3369 nan Broad specificity phosphatase PhoE (PhoE) (PDB:1EBB) VTP53229.1
Alteromonas macleodii MIT1002 3370 K00249 beta-Oxidation Acyl-CoA dehydrogenase related to the alkylation response protein AidB (CaiA) (PDB:1BUC) VTP53227.1
Alteromonas macleodii MIT1002 3371 nan Predicted  kinase, aminoglycoside phosphotransferase (APT) family (YcbJ) VTP53225.1
Alteromonas macleodii MIT1002 3372 2.44269E-5 K00344 nan NADPH:quinone reductase or related Zn-dependent oxidoreductase (Qor) (PDB:2VCY) VTP53223.1
Alteromonas macleodii MIT1002 3373 K01176 nan Glycosidase/amylase (phosphorylase) (AmyA) (PDB:2P67) (PUBMED:29684280) VTP53221.1
Alteromonas macleodii MIT1002 3374 1.65139E-5 K09858 nan Uncharacterized conserved protein YchJ, contains N- and C-terminal SEC-C domains (YchJ) (PDB:2I9W) VTP53219.1
Alteromonas macleodii MIT1002 3375 nan VTP53217.1
Alteromonas macleodii MIT1002 3376 K03975 nan Uncharacterized membrane protein YqaA, VTT domain (YgaA) VTP53215.1
Alteromonas macleodii MIT1002 3377 nan
Alteromonas macleodii MIT1002 3378 2.62498E-6 K07147 nan Molybdopterin-dependent catalytic subunit of periplasmic DMSO/TMAO and protein-methionine-sulfoxide reductases (MsrP) (PDB:1OGP) (PUBMED:26641313;32750406) VTP53211.1
Alteromonas macleodii MIT1002 3379 1.18692E-4 1.08855E-4 7.47561E-5 1.96726E-6 K01129 nan dGTP triphosphohydrolase (Dgt) (PDB:6OI7) VTP53209.1
Alteromonas macleodii MIT1002 3380 7.07029E-5 1.42879E-4 8.39596E-5 K08722 nan 5'-deoxynucleotidase YfbR and related HD superfamily hydrolases (YfbR) (PDB:2PAQ) VTP53207.1
Alteromonas macleodii MIT1002 3381 0.001109678 0.00158907 0.002111781 0.00139161 K14260 nan Aspartate/methionine/tyrosine aminotransferase (AspB) (PDB:2O0R) VTP53205.1
Alteromonas macleodii MIT1002 3382 nan Uncharacterized membrane protein VTP53203.1
Alteromonas macleodii MIT1002 3383 nan VTP53201.1
Alteromonas macleodii MIT1002 3384 8.30375E-7 K03296 nan Multidrug efflux pump subunit AcrB (AcrB) (PDB:1IWG) VTP53199.1
Alteromonas macleodii MIT1002 3385 7.54265E-6 7.80273E-7 3.90136E-6 1.75561E-5 K03296 nan Multidrug efflux pump subunit AcrB (AcrB) (PDB:1IWG) VTP53197.1
Alteromonas macleodii MIT1002 3386 9.33016E-6 2.33254E-6 K03585 Multidrug resistance, efflux pump MexAB-OprM Multidrug efflux pump subunit AcrA (membrane-fusion protein) (AcrA) (PDB:1T5E) VTP53195.1
Alteromonas macleodii MIT1002 3387 4.75761E-4 4.37429E-4 7.50844E-4 1.3867E-4 K07397 nan Uncharacterized OsmC-related protein (YhfA) (PDB:1LQL) VTP53193.1
Alteromonas macleodii MIT1002 3388 6.72739E-5 2.59485E-5 K00243 nan Predicted RNA-binding protein YitL, contains S1 domains, virulence factor B family (CvfB) (PDB:3GO5) VTP53191.1
Alteromonas macleodii MIT1002 3389 4.48657E-5 1.4357E-5 K07160 nan 5-oxoprolinase subunit A (PxpA) (PDB:1V6T) (PUBMED:28830929) VTP53189.1
Alteromonas macleodii MIT1002 3390 K06351 nan 5-oxoprolinase subunit B/Allophanate hydrolase subunit 1 (PxpB) (PDB:2KWA) (PUBMED:28830929) VTP53187.1
Alteromonas macleodii MIT1002 3391 1.11666E-5 6.97912E-6 2.51248E-5 6.97912E-6 K23124 nan 5-oxoprolinase subunit C/Allophanate hydrolase subunit 2 (PxpC) (PDB:3MML) (PUBMED:28830929) VTP53185.1
Alteromonas macleodii MIT1002 3392 2.13735E-4 1.02797E-4 2.73785E-4 4.45791E-4 K00824 nan Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase (IlvE) (PDB:1A3G) VTP53183.1
Alteromonas macleodii MIT1002 3393 4.66519E-4 0.001597724 0.001447034 7.55513E-4 K03711 nan Fe2+ or Zn2+ uptake regulation protein Fur/Zur (Fur) (PDB:1MZB) VTP53181.1
Alteromonas macleodii MIT1002 3394 3.67719E-4 1.44806E-5 2.67672E-5 7.59573E-4 K03406 nan Methyl-accepting chemotaxis protein (MCP) (Tar) (PDB:1QU7) VTP53179.1
Alteromonas macleodii MIT1002 3395 4.54845E-5 6.95745E-4 1.81938E-4 1.26346E-4 K03839 nan Flavodoxin (FldA) (PDB:1AG9) VTP53177.1
Alteromonas macleodii MIT1002 3396 nan VTP53175.1
Alteromonas macleodii MIT1002 3397 3.39524E-6 2.20691E-5 3.05572E-5 3.39524E-6 K01175 nan 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase MenH and related esterases, alpha/beta hydrolase fold (MenH) (PDB:4MYS) VTP53173.1
Alteromonas macleodii MIT1002 3398 2.44269E-4 1.51002E-4 8.32734E-5 K03746 nan DNA-binding protein H-NS (Hns) (PDB:1HNR) VTP53171.1
Alteromonas macleodii MIT1002 3399 0.003441653 6.62596E-4 0.001575066 8.7296E-5 K00311 nan Dehydrogenase (flavoprotein) (FixC) (PDB:4OPU)!!!Ferredoxin-like protein FixX (FixX) VTP53169.1
Alteromonas macleodii MIT1002 3400 9.87236E-4 0.002380154 0.008369233 0.001345432 K03521 nan Electron transfer flavoprotein, alpha and beta subunits (FixA) (PDB:5OL2) VTP53167.1
Alteromonas macleodii MIT1002 3401 5.615E-5 3.29287E-4 3.93051E-4 1.42755E-4 K03522 nan Electron transfer flavoprotein, alpha subunit FixB (FixB) (PDB:1EFP) VTP53165.1
Alteromonas macleodii MIT1002 3402 1.25008E-4 5.69002E-4 2.81627E-4 nan 1,4-alpha-glucan branching enzyme (GlgB) (PDB:4LPC) (PUBMED:25871919) VTP53163.1
Alteromonas macleodii MIT1002 3403 0.001903513 5.99796E-4 8.08761E-4 0.001852876 K03585 Multidrug resistance, efflux pump MexAB-OprM Multidrug efflux pump subunit AcrA (membrane-fusion protein) (AcrA) (PDB:1T5E) VTP53161.1
Alteromonas macleodii MIT1002 3404 7.9289E-4 4.49511E-4 3.47591E-4 3.50399E-4 nan Multidrug efflux pump subunit AcrB (AcrB) (PDB:1IWG) VTP53159.1
Alteromonas macleodii MIT1002 3405 2.6381E-4 2.30019E-4 9.24151E-5 7.34027E-4 K01322 nan Prolyl endopeptidase PreP, S9A serine peptidase family (PreP) (PDB:1E5T) VTP53157.1
Alteromonas macleodii MIT1002 3406 K07497 nan Transposase InsO and inactivated derivatives (Tra5) VTP56522.1
Alteromonas macleodii MIT1002 3407 K14059 nan Site-specific recombinase XerC (XerC) VTP50307.1
Alteromonas macleodii MIT1002 3408 6.87006E-6 K02171 beta-Lactam resistance, Bla system Transcriptional regulator, CopY/TcrY family (CopY) (PDB:1OKR) VTP50306.1
Alteromonas macleodii MIT1002 3409 nan Zn-dependent protease with chaperone function (HtpX) (PDB:2YPT) VTP50305.1
Alteromonas macleodii MIT1002 3410 2.93806E-5 K15725 nan Outer membrane protein TolC (TolC) (PDB:1EK9) VTP50304.1
Alteromonas macleodii MIT1002 3411 8.53755E-6 nan Multidrug efflux pump subunit AcrA (membrane-fusion protein) (AcrA) (PDB:1T5E) VTP50303.1
Alteromonas macleodii MIT1002 3412 2.15367E-5 8.39091E-7 3.91576E-6 8.39091E-7 K15726 nan Cu/Ag efflux pump CusA (CusA) (PDB:3K07) VTP50302.1
Alteromonas macleodii MIT1002 3413 nan Hydrogenase/urease accessory protein HupE (HupE) VTP50301.1
Alteromonas macleodii MIT1002 3414 1.32767E-4 1.06042E-4 7.06942E-5 8.2764E-5 nan VTP50300.1
Alteromonas macleodii MIT1002 3415 3.69482E-5 nan VTP50299.1
Alteromonas macleodii MIT1002 3416 1.77465E-5 7.34336E-6 1.83584E-6 1.83584E-6 nan Signal transduction histidine kinase (BaeS) (PDB:1JOY) VTP50298.1
Alteromonas macleodii MIT1002 3417 nan DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain (OmpR) (PDB:1XHF) VTP50297.1
Alteromonas macleodii MIT1002 3418 nan Phosphatidate phosphatase PAH1, contains Lipin and LNS2 domains. can be involved in plasmid maintenance (SMP2) VTP50296.1
Alteromonas macleodii MIT1002 3419 nan Glycosyltransferase involved in cell wall bisynthesis (WcaA) (PDB:5MLZ) VTP50295.1
Alteromonas macleodii MIT1002 3420 nan Uncharacterized membrane protein YdjX, related to fungal oxalate transporter, TVP38/TMEM64 family (TVP38) (PUBMED:20889782) VTP50294.1
Alteromonas macleodii MIT1002 3421 K07264 nan PMT family glycosyltransferase ArnT/Agl22, involved in glycosylation of proteins and lipid IVA (ArnT) (PDB:5EZM) (PUBMED:16226890;31233657;32706435) VTP50293.1
Alteromonas macleodii MIT1002 3422 K03760 KDO2-lipid A modification pathway Phosphoethanolamine transferase for periplasmic glucans OpgE, AlkP superfamily (OpgE) (PDB:5ZZU) VTP50292.1
Alteromonas macleodii MIT1002 3423 nan Diacylglycerol kinase (DgkA) (PDB:2KDC) VTP50291.1
Alteromonas macleodii MIT1002 3424 nan VTP50290.1
Alteromonas macleodii MIT1002 3425 2.40922E-5 3.01153E-6 K16264 nan Co/Zn/Cd efflux system component (CzcD) VTP50289.1
Alteromonas macleodii MIT1002 3426 9.34595E-6 2.12408E-6 3.39852E-6 1.91167E-5 K15726 nan Cu/Ag efflux pump CusA (CusA) (PDB:3K07) VTP50288.1
Alteromonas macleodii MIT1002 3427 K15727 nan Multidrug efflux pump subunit AcrA (membrane-fusion protein) (AcrA) (PDB:1T5E) VTP50287.1
Alteromonas macleodii MIT1002 3428 K15725 nan Outer membrane protein TolC (TolC) (PDB:1EK9) VTP50286.1
Alteromonas macleodii MIT1002 3429 nan VTP50285.1
Alteromonas macleodii MIT1002 3430 nan VTP50284.1
Alteromonas macleodii MIT1002 3431 nan VTP50283.1
Alteromonas macleodii MIT1002 3432 nan VTP50282.1
Alteromonas macleodii MIT1002 3433 K07497 nan Transposase InsO and inactivated derivatives (Tra5) VTP50281.1
Alteromonas macleodii MIT1002 3434 nan VTP50280.1
Alteromonas macleodii MIT1002 3435 2.88317E-5 nan Copper chaperone CopZ (CopZ) (PDB:1AFI) VTP50279.1
Alteromonas macleodii MIT1002 3436 5.86245E-5 nan VTP50278.1
Alteromonas macleodii MIT1002 3437 4.05238E-6 K21310 nan Protein-S-isoprenylcysteine O-methyltransferase Ste14 (STE14) (PDB:5V7P) VTP50277.1
Alteromonas macleodii MIT1002 3438 7.39655E-5 nan VTP50276.1
Alteromonas macleodii MIT1002 3439 1.73886E-4 2.13632E-4 6.70704E-5 nan Plastocyanin domain containing protein (PDB:2MRY) VTP50275.1
Alteromonas macleodii MIT1002 3440 2.96871E-4 5.32643E-4 5.17275E-5 1.09077E-4 K17686 nan Cation-transporting P-type ATPase (ZntA) (PDB:4BBJ) VTP50274.1
Alteromonas macleodii MIT1002 3441 nan DNA-binding transcriptional regulator, MerR family (SoxR) (PDB:2VZ4) VTP50273.1
Alteromonas macleodii MIT1002 3442 1.00499E-5 K04655 nan Carbamoyl dehydratase HypE (hydrogenase maturation factor) (HypE) (PDB:2I6R) (PUBMED:28618091) VTP50272.1
Alteromonas macleodii MIT1002 3443 1.90835E-5 K04656 nan Hydrogenase maturation factor HypF (carbamoyltransferase) (HypF) (PDB:3TSP) VTP50271.1
Alteromonas macleodii MIT1002 3444 9.33016E-6 K04654 nan Hydrogenase maturation factor HypD (HypD) (PDB:2Z1D) VTP50270.1
Alteromonas macleodii MIT1002 3445 1.41833E-5 K04652 nan Hydrogenase/urease maturation factor HypB, Ni2+-binding GTPase (HypB) (PDB:2HF8) (PUBMED:24338018;23899293) VTP50269.1
Alteromonas macleodii MIT1002 3446 K04651 nan Hydrogenase maturation factor HypA/HybF, metallochaperone involved in Ni insertion (HybF) (PDB:3A43) (PUBMED:16817932) VTP50268.1
Alteromonas macleodii MIT1002 3447 K04653 nan Hydrogenase maturation factor HybG, HypC/HupF family (HypC) (PDB:2OT2) VTP50267.1
Alteromonas macleodii MIT1002 3448 nan VTP50266.1
Alteromonas macleodii MIT1002 3449 1.82439E-4 9.14543E-6 K06281 nan Ni,Fe-hydrogenase I large subunit (HyaB) (PDB:6FPI) (PUBMED:25905665) VTP50265.1
Alteromonas macleodii MIT1002 3450 K06282 nan Ni,Fe-hydrogenase I small subunit (HyaA) (PDB:6FPI) VTP50264.1
Alteromonas macleodii MIT1002 3451 K03618 nan VTP50263.1
Alteromonas macleodii MIT1002 3452 K03605 nan Ni,Fe-hydrogenase maturation factor (HyaD) (PDB:1CFZ) (PUBMED:15294295) VTP50262.1
Alteromonas macleodii MIT1002 3453 8.64243E-6 nan VTP50261.1
Alteromonas macleodii MIT1002 3454 3.33094E-6 nan VTP50260.1
Alteromonas macleodii MIT1002 3455 1.39582E-5 nan VTP50259.1
Alteromonas macleodii MIT1002 3456 4.34677E-4 K21832 nan Ferredoxin (Fdx) (PDB:1KRH)!!!Flavodoxin/ferredoxin--NADP reductase (Fpr) (PDB:3OZU) VTP50258.1
Alteromonas macleodii MIT1002 3457 1.25177E-5 nan VTP50257.1
Alteromonas macleodii MIT1002 3458 3.70129E-4 0.001542619 2.75734E-4 nan VTP50256.1
Alteromonas macleodii MIT1002 3459 2.33678E-4 nan VTP50255.1
Alteromonas macleodii MIT1002 3460 nan Cytochrome c551/c552 (CytC552) (PDB:2ZXY) VTP50254.1
Alteromonas macleodii MIT1002 3461 nan Cytochrome c551/c552 (CytC552) (PDB:2ZXY) VTP50253.1
Alteromonas macleodii MIT1002 3462 nan VTP50252.1
Alteromonas macleodii MIT1002 3463 K16216 nan FAD/FMN-containing lactate dehydrogenase/glycolate oxidase (GlcD) (PDB:1AHU)!!!NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family (FabG) (PDB:6L1H) VTP50251.1
Alteromonas macleodii MIT1002 3464 nan VTP50249.1
Alteromonas macleodii MIT1002 3465 nan Uncharacterized membrane protein, DUF1624 family VTP50248.1
Alteromonas macleodii MIT1002 3466 5.49605E-6 nan Ketosteroid isomerase homolog YybH (YybH) (PDB:2GXF) VTP50247.1
Alteromonas macleodii MIT1002 3467 5.53061E-6 nan Ketosteroid isomerase homolog YybH (YybH) (PDB:2GXF) VTP50246.1
Alteromonas macleodii MIT1002 3468 K07245 nan Putative copper export protein (PcoD) VTP50245.1
Alteromonas macleodii MIT1002 3469 6.76436E-6 5.74972E-5 K07156 nan Copper-binding protein CopC (methionine-rich) (CopC) (PDB:1IX2) VTP50244.1
Alteromonas macleodii MIT1002 3470 nan VTP50243.1
Alteromonas macleodii MIT1002 3471 5.8905E-6 3.366E-6 K07787 nan Cu/Ag efflux pump CusA (CusA) (PDB:3K07) VTP50242.1
Alteromonas macleodii MIT1002 3472 K07798 nan Multidrug efflux pump subunit AcrA (membrane-fusion protein) (AcrA) (PDB:1T5E)!!!Periplasmic Cu and Ag efflux protein CusF (CusF) VTP50241.1
Alteromonas macleodii MIT1002 3473 K15725 nan Outer membrane protein TolC (TolC) (PDB:1EK9) VTP50240.1
Alteromonas macleodii MIT1002 3474 nan Uncharacterized metal-binding protein, DUF411 family VTP50239.1
Alteromonas macleodii MIT1002 3475 nan
Alteromonas macleodii MIT1002 3476 7.87685E-5 3.09909E-5 K07665 Imipenem resistance, repression of porin OprD DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain (OmpR) (PDB:1XHF) VTP50237.1
Alteromonas macleodii MIT1002 3477 4.88538E-5 6.88963E-5 4.38431E-5 4.69748E-6 K07644 Imipenem resistance, repression of porin OprD Signal transduction histidine kinase (BaeS) (PDB:1JOY) VTP50236.1
Alteromonas macleodii MIT1002 3478 nan VTP50235.1
Alteromonas macleodii MIT1002 3479 nan Methionyl-tRNA formyltransferase (Fmt) (PDB:1FMT) VTP50234.1
Alteromonas macleodii MIT1002 3480 0.001376761 8.19262E-4 6.6595E-4 0.001886785 K03406 nan Methyl-accepting chemotaxis protein (MCP) (Tar) (PDB:1QU7) VTP51092.1
Alteromonas macleodii MIT1002 3481 2.98091E-6 3.77582E-5 1.68918E-5 2.98091E-6 K03576 nan DNA-binding transcriptional regulator, LysR family (LysR) (PDB:2FYI) VTP51093.1
Alteromonas macleodii MIT1002 3482 1.09238E-5 1.36548E-5 K04761 nan DNA-binding transcriptional regulator, LysR family (LysR) (PDB:2FYI) VTP51094.1
Alteromonas macleodii MIT1002 3483 1.32378E-4 2.39091E-4 2.87719E-4 3.01903E-4 K01673 nan Carbonic anhydrase (CynT) (PDB:1EKJ) (PUBMED:22081392) VTP51095.1
Alteromonas macleodii MIT1002 3484 6.72299E-5 6.50786E-5 4.84055E-6 4.0338E-6 K03321 nan Sulfate permease or related transporter, MFS superfamily (SUL1) (PDB:3NY7) VTP51096.1
Alteromonas macleodii MIT1002 3485 K02014 nan Outer membrane receptor protein, Fe transport (CirA) (PDB:1BY3) VTP51097.1
Alteromonas macleodii MIT1002 3486 K02167 nan DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA (AcrR) (PDB:2QOP) VTP51098.1
Alteromonas macleodii MIT1002 3487 0.001891085 0.001415981 2.6555E-4 9.32817E-4 K07386 nan Predicted metalloendopeptidase (PepO) (PDB:1DMT) VTP51099.1
Alteromonas macleodii MIT1002 3488 K09919 nan Predicted N-acyltransferase VTP51100.1
Alteromonas macleodii MIT1002 3489 K03565 nan SOS response regulatory protein OraA/RecX, interacts with RecA (RecX) (PDB:3C1D) VTP51101.1
Alteromonas macleodii MIT1002 3490 0.003623875 0.007119317 0.005780104 0.002582697 K01872 nan Alanyl-tRNA synthetase (AlaS) (PDB:2ZZE) VTP51102.1
Alteromonas macleodii MIT1002 3491 1.39582E-5 3.25692E-4 K03563 nan sRNA-binding carbon storage regulator CsrA (CsrA) (PDB:1T3O) VTP51103.1
Alteromonas macleodii MIT1002 3492 nan Acyl-CoA hydrolase (YciA) (PDB:5DM5) VTP51104.1
Alteromonas macleodii MIT1002 3493 8.62125E-5 K01573 nan Na+-transporting oxaloacetate/methylmalonyl-CoA decarboxylase, gamma subunit (OadG) VTP51105.1
Alteromonas macleodii MIT1002 3494 0.007991215 0.005849873 0.006319062 0.008985945 K01571 nan Biotin carboxyl carrier protein (AccB) (PDB:1A6X)!!!Pyruvate/oxaloacetate carboxyltransferase (OadA1) (PDB:2NX9) (PUBMED:18681940) VTP51106.1
Alteromonas macleodii MIT1002 3495 1.08739E-4 K20509 nan Na+-transporting oxaloacetate/methylmalonyl-CoA decarboxylase, beta subunit (OadB) VTP51107.1
Alteromonas macleodii MIT1002 3496 2.97497E-4 1.10468E-4 4.81246E-5 5.57807E-5 K19230 nan ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain (GsiA) VTP51108.1
Alteromonas macleodii MIT1002 3497 6.19897E-5 1.23979E-5 K19229 nan ABC-type antimicrobial peptide export system, ATPase component SapD (SapD) VTP51109.1
Alteromonas macleodii MIT1002 3498 K19228 nan ABC-type antimicrobial peptide export system, permease component SapC (SapC) VTP51110.1
Alteromonas macleodii MIT1002 3499 K19227 nan ABC-type dipeptide/oligopeptide/nickel transport system, permease component (DppB) VTP51111.1
Alteromonas macleodii MIT1002 3500 3.29137E-4 4.70196E-5 1.04544E-4 1.21551E-4 K19226 nan ABC-type transport system, periplasmic component (DdpA) (PDB:3RQT) VTP51112.1
Alteromonas macleodii MIT1002 3501 9.43021E-6 3.41845E-5 6.12964E-5 2.35756E-5 K03974 nan DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains (AtoC) (PDB:1ZY2) VTP51113.1
Alteromonas macleodii MIT1002 3502 6.97295E-5 1.73032E-4 5.11351E-4 3.09909E-4 K03969 nan Phage shock protein A (PspA) (PDB:4WHE) VTP51114.1
Alteromonas macleodii MIT1002 3503 2.18914E-4 1.26154E-4 8.90499E-5 K03970 nan VTP51115.1
Alteromonas macleodii MIT1002 3504 1.7825E-4 7.13E-5 1.52503E-4 2.52521E-4 K03973 nan Phage shock protein PspC (stress-responsive transcriptional regulator) (PspC) VTP51116.1
Alteromonas macleodii MIT1002 3505 K00500 nan Phenylalanine-4-hydroxylase (PhhA) (PDB:1PHZ) VTP51117.1
Alteromonas macleodii MIT1002 3506 1.47127E-5 2.82937E-5 8.71445E-5 8.48811E-6 K03721 nan Transcriptional regulator TyrR of aromatic amino acids metabolism (TyrR) (PDB:1G2H) VTP51118.1
Alteromonas macleodii MIT1002 3507 2.32055E-4 5.90607E-4 6.40333E-4 8.5843E-4 K16171 Tyrosine degradation, tyrosine => homogentisate 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) (YcgM) (PDB:1GTT) VTP51119.1
Alteromonas macleodii MIT1002 3508 2.02619E-5 1.62095E-5 5.53826E-5 8.30741E-5 K01800 Tyrosine degradation, tyrosine => homogentisate Glutathione S-transferase (GstA) (PDB:1A0F) VTP51120.1
Alteromonas macleodii MIT1002 3509 2.26934E-5 K05800 nan DNA-binding transcriptional regulator, Lrp family (Lrp) (PDB:1I1G) VTP51121.1
Alteromonas macleodii MIT1002 3510 2.16511E-5 2.8646E-4 3.66403E-4 0.002044779 K00263 nan Glutamate dehydrogenase/leucine dehydrogenase (GdhA) (PDB:1B3B) (PUBMED:24391520) VTP51122.1
Alteromonas macleodii MIT1002 3511 9.45556E-6 2.77363E-4 1.702E-4 K02241 nan VTP51123.1
Alteromonas macleodii MIT1002 3512 9.71677E-6 1.37654E-5 1.57897E-5 2.42919E-6 K00453 Tryptophan metabolism, tryptophan => kynurenine => 2-aminomuconate Tryptophan 2,3-dioxygenase (vermilion) (TDO2) (PDB:2NOX) VTP51124.1
Alteromonas macleodii MIT1002 3513 5.64156E-5 8.62652E-5 8.95487E-6 3.01331E-4 nan Outer membrane receptor for ferrienterochelin and colicins (FepA) (PDB:2HDF) (PUBMED:16468998) VTP51125.1
Alteromonas macleodii MIT1002 3514 nan Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains (BepA) (PDB:6AIT) (PUBMED:24003122) VTP51126.1
Alteromonas macleodii MIT1002 3515 0.020037962 0.035015315 0.013309427 0.13859811 K02014 nan Outer membrane receptor for ferrienterochelin and colicins (FepA) (PDB:2HDF) (PUBMED:16468998) VTP51127.1
Alteromonas macleodii MIT1002 3516 9.35497E-6 K00472 nan Proline 4-hydroxylase (includes Rps23 Pro-64 3,4-dihydroxylase Tpa1), contains SM-20 domain (EGL9) (PDB:2G19) VTP51128.1
Alteromonas macleodii MIT1002 3517 5.63942E-4 1.52933E-4 2.45331E-4 4.0623E-4 nan VTP51129.1
Alteromonas macleodii MIT1002 3518 nan Aspartyl/asparaginyl beta-hydroxylase, cupin superfamily (LpxO2) VTP51130.1
Alteromonas macleodii MIT1002 3519 3.70105E-6 1.33237E-5 nan Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains (BepA) (PDB:6AIT) (PUBMED:24003122)!!!Flp pilus assembly protein TadD, contains TPR repeats (TadD) (PDB:3WXX) VTP51131.1
Alteromonas macleodii MIT1002 3520 1.90133E-5 1.90133E-5 5.38711E-5 nan VTP51132.1
Alteromonas macleodii MIT1002 3521 0.015596895 0.011962408 0.0169536 0.056135267 nan VTP51133.1
Alteromonas macleodii MIT1002 3522 0.015767653 0.026405014 0.015820831 0.109155364 K03561 nan Biopolymer transport protein ExbB/TolQ (TolQ) (PDB:5SV0) VTP51134.1
Alteromonas macleodii MIT1002 3523 0.001223028 9.19798E-4 7.41229E-4 0.00107394 K03561 nan Biopolymer transport protein ExbB/TolQ (TolQ) (PDB:5SV0) VTP51135.1
Alteromonas macleodii MIT1002 3524 0.001443406 0.001079224 0.001079224 0.001505584 K03559 nan Biopolymer transport protein ExbD (ExbD) (PDB:2JWK) VTP51136.1
Alteromonas macleodii MIT1002 3525 0.003160813 0.008774902 0.002600559 0.003898673 K03832 nan Periplasmic protein TonB, links inner and outer membranes (TonB) (PDB:1IHR) VTP51137.1
Alteromonas macleodii MIT1002 3526 0.011234736 0.012987901 0.013783022 0.048312984 nan Tetratricopeptide (TPR) repeat (TPR) (PDB:3AS4) VTP51138.1
Alteromonas macleodii MIT1002 3527 K06957 nan tRNA(Met) C34 N-acetyltransferase TmcA (TmcA) (PDB:2ZPA) VTP51139.1
Alteromonas macleodii MIT1002 3528 2.24519E-4 6.23665E-5 2.24519E-4 2.30756E-4 K10806 nan Acyl-CoA hydrolase (YciA) (PDB:5DM5) VTP51140.1
Alteromonas macleodii MIT1002 3529 0.002278016 8.97056E-5 0.001086996 0.019591825 K02014 nan Outer membrane receptor for ferrienterochelin and colicins (FepA) (PDB:2HDF) (PUBMED:16468998) VTP51141.1
Alteromonas macleodii MIT1002 3530 1.01077E-5 4.04307E-5 6.56999E-5 6.56999E-5 nan Thiamin-binding stress-response protein YqgV, UPF0045 family (YqgV) (PDB:1LXJ) (PUBMED:20471400) VTP51142.1
Alteromonas macleodii MIT1002 3531 K03811 nan Nicotinamide riboside transporter PnuC (PnuC) (PDB:4QTN) VTP51143.1
Alteromonas macleodii MIT1002 3532 K07251 nan Thiamine kinase or a related kinase (CotS) (PDB:3DXQ) VTP51144.1
Alteromonas macleodii MIT1002 3533 nan VTP51145.1
Alteromonas macleodii MIT1002 3534 K03789 nan Ribosomal protein S18 acetylase RimI and related acetyltransferases (RimI) (PDB:1GHE) VTP51146.1
Alteromonas macleodii MIT1002 3535 K15268 nan Permease of the drug/metabolite transporter (DMT) superfamily (RhaT) (PDB:5I20) VTP51147.1
Alteromonas macleodii MIT1002 3536 K03566 nan DNA-binding transcriptional regulator, LysR family (LysR) (PDB:2FYI) VTP51148.1
Alteromonas macleodii MIT1002 3537 K19577 nan Predicted arabinose efflux permease AraJ, MFS family (AraJ) (PDB:4LDS) VTP51149.1
Alteromonas macleodii MIT1002 3538 nan NADPH:quinone reductase or related Zn-dependent oxidoreductase (Qor) (PDB:2VCY) VTP51150.1
Alteromonas macleodii MIT1002 3539 nan NADPH:quinone reductase or related Zn-dependent oxidoreductase (Qor) (PDB:2VCY) VTP51151.1
Alteromonas macleodii MIT1002 3540 K07486 nan Transposase VTP51152.1
Alteromonas macleodii MIT1002 3541 4.80529E-6 4.80529E-6 K09004 nan Intracellular sulfur oxidation protein, DsrE/DsrF family (PDB:1L1S) (PUBMED:9695921) VTP54380.1
Alteromonas macleodii MIT1002 3542 2.49113E-6 2.40809E-5 2.49113E-6 nan Sugar lactone lactonase YvrE (YvrE) (PDB:1E1A) VTP54382.1
Alteromonas macleodii MIT1002 3543 nan VTP54384.1
Alteromonas macleodii MIT1002 3544 nan VTP54386.1
Alteromonas macleodii MIT1002 3545 1.33036E-6 K05851 nan Adenylate cyclase, class I (CyaA) VTP54388.1
Alteromonas macleodii MIT1002 3546 K02171 beta-Lactam resistance, Bla system Transcriptional regulator, CopY/TcrY family (CopY) (PDB:1OKR) VTP54390.1
Alteromonas macleodii MIT1002 3547 2.12922E-6 K02172 beta-Lactam resistance, Bla system Periplasmic protein TonB, links inner and outer membranes (TonB) (PDB:1IHR)!!!Signal transducer regulating beta-lactamase production, contains metallopeptidase domain (MecR1) VTP54392.1
Alteromonas macleodii MIT1002 3548 nan VTP54394.1
Alteromonas macleodii MIT1002 3549 2.77483E-5 4.28836E-6 3.53159E-6 3.78385E-6 nan Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins (OmpA) (PDB:1OAP) VTP54396.1
Alteromonas macleodii MIT1002 3550 1.06297E-4 3.18892E-4 3.06007E-4 7.7307E-5 K01759 nan Catechol 2,3-dioxygenase or related enzyme, vicinal oxygen chelate (VOC) family (GloA) (PDB:3R4Q) (PUBMED:11830595) VTP54398.1
Alteromonas macleodii MIT1002 3551 2.06349E-5 2.85715E-5 1.26984E-5 nan Uncharacterized conserved protein YehS, DUF1456 family (YehS) VTP54400.1
Alteromonas macleodii MIT1002 3552 K13483 Purine degradation, xanthine => urea Aldehyde, CO, or xanthine dehydrogenase, Fe-S subunit, CoxS/CutS family (CutS) (PDB:1FFU) (PUBMED:21175741) VTP54402.1
Alteromonas macleodii MIT1002 3553 2.57879E-6 K11178 Purine degradation, xanthine => urea Aldehyde, CO, or xanthine dehydrogenase, FAD-binding subunit (CutB) (PDB:5Y6Q) VTP54404.1
Alteromonas macleodii MIT1002 3554 K11177 Purine degradation, xanthine => urea Aldehyde, CO or xanthine dehydrogenase, Mo-binding subunit (CoxL) (PDB:1DGJ) (PUBMED:10095793) VTP54406.1
Alteromonas macleodii MIT1002 3555 4.94918E-4 6.56244E-6 5.52339E-5 5.9062E-5 K02035 nan ABC-type transport system, periplasmic component (DdpA) (PDB:3RQT) VTP54408.1
Alteromonas macleodii MIT1002 3556 2.42028E-5 K02033 nan ABC-type dipeptide/oligopeptide/nickel transport system, permease component (DppB) VTP54410.1
Alteromonas macleodii MIT1002 3557 K02034 nan ABC-type dipeptide/oligopeptide/nickel transport system, permease component (DppC) VTP54412.1
Alteromonas macleodii MIT1002 3558 1.03309E-4 1.86702E-6 3.54734E-5 4.66756E-6 K02032 nan ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain (GsiA) VTP54414.1
Alteromonas macleodii MIT1002 3559 nan Short-chain dehydrogenase (YqjQ) VTP54416.1
Alteromonas macleodii MIT1002 3560 nan NADP-dependent 3-hydroxy acid dehydrogenase YdfG (YdfG) (PDB:3P19) VTP54418.1
Alteromonas macleodii MIT1002 3561 K05520 nan Protein/nucleotide deglycase, PfpI/YajL/DJ-1 family (repair of methylglyoxal-glycated proteins and nucleic acids) (YajL) (PDB:5SY4) (PUBMED:19028889;28596309;26678554) VTP54420.1
Alteromonas macleodii MIT1002 3562 K07058 nan Uncharacterized membrane protein, BrkB/YihY/UPF0761 family (not an RNase) (BrkB) VTP54422.1
Alteromonas macleodii MIT1002 3563 K08219 nan Predicted arabinose efflux permease AraJ, MFS family (AraJ) (PDB:4LDS) VTP54424.1
Alteromonas macleodii MIT1002 3564 1.05234E-4 2.86268E-4 0.002134311 K07114 nan vWFA (von Willebrand factor type A) domain of Mg and Co chelatases (ChlD) VTP54426.1
Alteromonas macleodii MIT1002 3565 K07284 nan Sortase (surface protein transpeptidase) (SrtA) (PDB:1IJA) VTP54428.1
Alteromonas macleodii MIT1002 3566 nan Polygalacturonase (Pgu1) (PDB:1BHE) VTP54430.1
Alteromonas macleodii MIT1002 3567 K01488 nan Adenosine deaminase (Add) (PDB:1A4L) VTP54432.1
Alteromonas macleodii MIT1002 3568 nan VTP54434.1
Alteromonas macleodii MIT1002 3569 nan Peroxiredoxin (Bcp) (PDB:5IPH) VTP54436.1
Alteromonas macleodii MIT1002 3570 1.77162E-5 6.03961E-5 6.03961E-5 4.83169E-6 nan Uncharacterized conserved protein YaeQ, suppresses RfaH defect (YaeQ) (PDB:2G3W) (PUBMED:9604894;32214543) VTP54438.1
Alteromonas macleodii MIT1002 3571 nan VTP54440.1
Alteromonas macleodii MIT1002 3572 0.001661746 9.24629E-4 4.33218E-4 0.004771861 nan VTP54442.1
Alteromonas macleodii MIT1002 3573 K06985 nan Predicted aspartyl protease (PDB:5C9F) VTP54444.1
Alteromonas macleodii MIT1002 3574 2.88317E-5 7.20793E-6 nan VTP54446.1
Alteromonas macleodii MIT1002 3575 3.92575E-6 K17231 nan Nitroreductase (NfnB) (PDB:1F5V) VTP54448.1
Alteromonas macleodii MIT1002 3576 K03291 nan Predicted arabinose efflux permease AraJ, MFS family (AraJ) (PDB:4LDS) VTP54450.1
Alteromonas macleodii MIT1002 3577 K03828 nan N-acetylglutamate synthase or related acetyltransferase, GNAT family (ArgA) (PDB:2R98)!!!DNA-binding transcriptional regulator, MarR family (MarR) (PDB:1JGS) VTP54452.1
Alteromonas macleodii MIT1002 3578 K05522 nan Formamidopyrimidine-DNA glycosylase (Nei) (PDB:1EE8) VTP54454.1
Alteromonas macleodii MIT1002 3579 9.43021E-6 1.33595E-5 5.89388E-6 nan NADPH:quinone reductase or related Zn-dependent oxidoreductase (Qor) (PDB:2VCY) VTP54456.1
Alteromonas macleodii MIT1002 3580 9.71675E-6 1.21459E-5 nan VTP54458.1
Alteromonas macleodii MIT1002 3581 2.21057E-5 1.19371E-5 1.32635E-6 nan Superfamily II DNA helicase RecQ (RecQ) (PDB:1OYW) VTP54460.1
Alteromonas macleodii MIT1002 3582 2.19059E-5 nan Uncharacterized conserved protein YabN, contains tetrapyrrole methylase and MazG-like pyrophosphatase domain (YabN) VTP54462.1
Alteromonas macleodii MIT1002 3583 1.29319E-5 2.84501E-4 3.18986E-4 nan VTP54464.1
Alteromonas macleodii MIT1002 3584 4.7233E-5 7.08496E-6 1.04191E-5 3.08404E-5 K11527 nan Signal transduction histidine kinase (BaeS) (PDB:1JOY)!!!DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain (OmpR) (PDB:1XHF)!!!CheY-like REC (receiver) domain, includes chemotaxis protein CheY  and sporulation regulator Spo0F (CheY) (PDB:6QRJ)!!!HPt (histidine-containing phosphotransfer) domain (HPtr) (PDB:3IQT) VTP54466.1
Alteromonas macleodii MIT1002 3585 4.32798E-5 1.47545E-5 nan VTP54468.1
Alteromonas macleodii MIT1002 3586 1.98952E-6 2.98428E-5 1.1274E-5 9.94759E-7 K11354 nan CheY-like REC (receiver) domain, includes chemotaxis protein CheY  and sporulation regulator Spo0F (CheY) (PDB:6QRJ)!!!Bacteriophytochrome (light-regulated signal transduction histidine kinase) (PDB:2VEA) VTP54470.1
Alteromonas macleodii MIT1002 3587 2.20947E-6 K21430 nan Glucose/arabinose dehydrogenase, beta-propeller fold (YliI) (PDB:1C9U) VTP54472.1
Alteromonas macleodii MIT1002 3588 nan VTP54474.1
Alteromonas macleodii MIT1002 3589 K07017 nan Predicted hydrolase of the alpha/beta superfamily (YbbA) (PDB:3GFF) VTP54476.1
Alteromonas macleodii MIT1002 3590 2.24941E-4 8.74123E-6 7.80883E-5 8.47899E-5 nan CubicO group peptidase, beta-lactamase class C family (AmpC) (PDB:1BLS) VTP54478.1
Alteromonas macleodii MIT1002 3591 1.17677E-4 6.0978E-5 6.57921E-5 1.15537E-4 nan VTP54480.1
Alteromonas macleodii MIT1002 3592 0.007470522 0.003791759 0.005037757 0.004961364 K00281 Photorespiration Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain (GcvP1) (PDB:4LGL)!!!Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain (GcvP2) (PDB:4LGL) VTP54482.1
Alteromonas macleodii MIT1002 3593 2.72672E-5 K02437 Photorespiration Glycine cleavage system protein H (lipoate-binding) (GcvH) (PDB:1DXM) VTP54484.1
Alteromonas macleodii MIT1002 3594 2.12289E-5 8.43442E-4 4.36009E-4 5.15618E-4 K00605 Photorespiration Glycine cleavage system protein T (aminomethyltransferase) (GcvT) (PDB:2GAH) (PUBMED:25433025;25505271) VTP54486.1
Alteromonas macleodii MIT1002 3595 3.11832E-6 nan DNA-binding transcriptional regulator, LysR family (LysR) (PDB:2FYI) VTP54488.1
Alteromonas macleodii MIT1002 3596 nan nanoRNase/pAp phosphatase, hydrolyzes c-di-AMP and oligoRNAs (NrnA) (PDB:5O4Z) VTP54490.1
Alteromonas macleodii MIT1002 3597 K07497 nan Transposase InsO and inactivated derivatives (Tra5)!!!Transposase InsE and inactivated derivatives (InsE) (PDB:2JN6) (PUBMED:23818957) VTP54492.1
Alteromonas macleodii MIT1002 3598 1.99856E-5 nan DNA-binding transcriptional regulator, GntR family (GntR) (PDB:3FMS) VTP54788.1
Alteromonas macleodii MIT1002 3599 6.18478E-4 6.5877E-4 9.43834E-4 0.002069988 K03417 nan 2-Methylisocitrate lyase and related enzymes, PEP mutase family (PrpB) (PDB:1XG3) VTP54789.1
Alteromonas macleodii MIT1002 3600 1.5675E-4 5.29031E-4 2.57854E-4 1.5048E-4 K01659 nan Citrate synthase (GltA) (PDB:3TQG) (PUBMED:25211225) VTP54790.1
Alteromonas macleodii MIT1002 3601 7.95473E-4 6.67762E-4 3.75659E-4 1.37051E-4 K20455 nan Aconitase A (AcnA) (PDB:1ACO) VTP54791.1
Alteromonas macleodii MIT1002 3602 2.01382E-5 3.35636E-5 5.74311E-5 5.8177E-5 K09788 nan 2-Methylaconitate cis-trans-isomerase PrpF (2-methyl citrate pathway) (PrpF) (PDB:2H9F) (PUBMED:17567742) VTP54792.1
Alteromonas macleodii MIT1002 3603 9.81748E-6 4.2075E-6 nan Two-component response regulator, PleD family, consists of two REC domains and a diguanylate cyclase (GGDEF) domain (PleD) (PDB:1W25) VTP54793.1
Alteromonas macleodii MIT1002 3604 K03307 nan Na+/proline symporter (PutP) (PDB:5NVA) VTP54794.1
Alteromonas macleodii MIT1002 3605 1.54818E-6 K08981 nan Uncharacterized membrane protein YdbT, contains bPH2 (bacterial pleckstrin homology) domain (YdbT) VTP54795.1
Alteromonas macleodii MIT1002 3606 K09167 nan Uncharacterized membrane protein YdbS, contains bPH2 (bacterial pleckstrin homology) domain (YdbS) VTP54796.1
Alteromonas macleodii MIT1002 3607 2.89383E-4 3.95566E-4 2.53117E-4 3.50513E-4 K07648 nan Signal transduction histidine kinase (BaeS) (PDB:1JOY)!!!CheY-like REC (receiver) domain, includes chemotaxis protein CheY  and sporulation regulator Spo0F (CheY) (PDB:6QRJ)!!!HPt (histidine-containing phosphotransfer) domain (HPtr) (PDB:3IQT) VTP54797.1
Alteromonas macleodii MIT1002 3608 2.82755E-6 2.82755E-6 K01447 nan N-acetyl-anhydromuramyl-L-alanine amidase AmpD (AmpD) (PDB:2Y28) VTP54798.1
Alteromonas macleodii MIT1002 3609 0.029107966 0.027164454 0.041523512 0.038571607 K00265 nan Glutamate synthase domain 1 (GltB1) (PDB:1EA0)!!!Glutamate synthase domain 2 (GltB2) (PDB:1EA0)!!!Glutamate synthase domain 3 (GltB3) (PDB:1EA0) VTP54799.1
Alteromonas macleodii MIT1002 3610 0.011498366 0.012558835 0.02185536 0.03535766 K00266 nan NADPH-dependent glutamate synthase beta chain or related oxidoreductase (GltD) (PDB:1H7X) VTP54801.1
Alteromonas macleodii MIT1002 3611 5.90179E-6 nan VTP54803.1
Alteromonas macleodii MIT1002 3612 2.55543E-5 nan VTP54805.1
Alteromonas macleodii MIT1002 3613 2.03802E-4 5.66116E-4 3.15767E-4 2.45317E-5 K01243 Cysteine biosynthesis, methionine => cysteine Nucleoside phosphorylase/nucleosidase, includes 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase MtnN and futalosine hydrolase MqnB (MtnN) (PDB:1T8R) (PUBMED:18801996) VTP54807.1
Alteromonas macleodii MIT1002 3614 K02227 Cobalamin biosynthesis, cobyrinate a,c-diamide => cobalamin Cobalamin biosynthesis protein CobD/CbiB (CbiB) VTP54809.1
Alteromonas macleodii MIT1002 3615 3.24631E-5 1.14576E-5 5.6333E-5 2.86439E-6 K02016 nan ABC-type Fe3+-hydroxamate transport system, periplasmic component (FepB) (PDB:1ESZ) VTP54811.1
Alteromonas macleodii MIT1002 3616 K03972 nan Rhodanese-related sulfurtransferase (PspE) (PDB:1TQ1) VTP54813.1
Alteromonas macleodii MIT1002 3617 nan VTP54815.1
Alteromonas macleodii MIT1002 3618 4.37496E-6 nan Ribosomal protein S18 acetylase RimI and related acetyltransferases (RimI) (PDB:1GHE) VTP54817.1
Alteromonas macleodii MIT1002 3619 1.26458E-5 7.78201E-6 K09471 GABA biosynthesis, prokaryotes, putrescine => GABA Glycine/D-amino acid oxidase (deaminating) (DadA) (PDB:3AWI) VTP54819.1
Alteromonas macleodii MIT1002 3620 1.87899E-5 2.25479E-5 2.25479E-4 1.54077E-4 nan Uncharacterized conserved protein YbaA, DUF1428 family (YbaA) VTP54821.1
Alteromonas macleodii MIT1002 3621 6.00938E-4 0.001985005 0.003210389 0.001142737 K01866 nan Tyrosyl-tRNA synthetase (TyrS) (PDB:4OUD) VTP54823.1
Alteromonas macleodii MIT1002 3622 9.30548E-6 K19304 nan Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain (NlpD) (PDB:2GU1)!!!Cell division protein YtfB/OapA (opacity-associated protein A) (OapA) (PUBMED:29686141) VTP54825.1
Alteromonas macleodii MIT1002 3623 K09001 nan 1,6-Anhydro-N-acetylmuramate kinase (AnmK) (PDB:3CQY) (PUBMED:15901686) VTP54827.1
Alteromonas macleodii MIT1002 3624 8.43518E-6 nan Na+/H+ antiporter NhaD or related arsenite permease (ArsB) VTP54829.1
Alteromonas macleodii MIT1002 3625 K02429 nan Fucose permease (FucP) (PDB:3O7P) VTP54831.1
Alteromonas macleodii MIT1002 3626 K07267 nan Carbohydrate-selective porin OprB (OprB) (PDB:4GEY) VTP54833.1
Alteromonas macleodii MIT1002 3627 2.35755E-6 2.35755E-6 2.35755E-6 K10680 nan 2,4-dienoyl-CoA reductase or related NADH-dependent reductase, Old Yellow Enzyme (OYE) family (FadH) (PDB:1BWK) VTP54835.1
Alteromonas macleodii MIT1002 3628 nan Chalcone/flavanone-binding protein YndB, AHSA1/START/SRPBCC domain (YndB) (PDB:2KTE) (PUBMED:20818668) VTP54837.1
Alteromonas macleodii MIT1002 3629 1.45832E-6 2.18748E-5 1.45832E-6 1.31249E-5 K01740 nan Cystathionine beta-lyase/cystathionine gamma-synthase (MetC) (PDB:1CL1) VTP54839.1
Alteromonas macleodii MIT1002 3630 1.0659E-5 nan Phosphoglycerate dehydrogenase or related dehydrogenase (SerA) (PDB:3OET) VTP54841.1
Alteromonas macleodii MIT1002 3631 1.8513E-5 K00799 nan Glutathione S-transferase (GstA) (PDB:1A0F) VTP54843.1
Alteromonas macleodii MIT1002 3632 7.71375E-6 9.64219E-5 K15724 nan Fe-S cluster assembly iron-binding protein IscA (IscA) (PDB:1R94) VTP54845.1
Alteromonas macleodii MIT1002 3633 3.17461E-6 1.26984E-5 2.85715E-5 K23753 nan Polyphosphate kinase 2, PPK2 family (PPK2) (PDB:3CZP) VTP54847.1
Alteromonas macleodii MIT1002 3634 8.86183E-5 K03608 nan Septum formation topological specificity factor MinE (MinE) (PDB:1EV0) VTP54849.1
Alteromonas macleodii MIT1002 3635 1.04609E-4 4.72919E-4 6.12397E-4 2.95847E-4 K03609 nan Septum site-determining ATPase MinD (MinD) (PDB:4V02) VTP54851.1
Alteromonas macleodii MIT1002 3636 3.04396E-5 K03610 nan Septum site-determining protein MinC (MinC) (PDB:1HF2) VTP54853.1
Alteromonas macleodii MIT1002 3637 1.60993E-4 7.69687E-6 7.10036E-4 0.001813575 K01679 Citrate cycle (TCA cycle, Krebs cycle) Fumarate hydratase class II (FumC) (PDB:1KQ7) VTP54855.1
Alteromonas macleodii MIT1002 3638 nan VTP54857.1
Alteromonas macleodii MIT1002 3639 1.12134E-4 5.31161E-5 3.04926E-4 0.001534467 nan Azurin (BlueCu) VTP54859.1
Alteromonas macleodii MIT1002 3640 nan VTP54861.1
Alteromonas macleodii MIT1002 3641 3.6188E-6 nan VTP54863.1
Alteromonas macleodii MIT1002 3642 3.93982E-6 6.30371E-6 K03281 nan H+/Cl- antiporter ClcA (ClcA) (PDB:1KPK) VTP54865.1
Alteromonas macleodii MIT1002 3643 K08973 Heme biosynthesis, plants and bacteria, glutamate => heme Protoporphyrinogen oxidase HemJ (unrelated to HemG or HemY) (HemJ) (PUBMED:20823222;21642412;25108393;29925590) VTP54867.1
Alteromonas macleodii MIT1002 3644 nan VTP54869.1
Alteromonas macleodii MIT1002 3645 K07039 nan VTP54871.1
Alteromonas macleodii MIT1002 3646 5.52367E-6 nan Mn2+ or Fe2+ transporter, NRAMP family (MntH) (PDB:5KTE) VTP54873.1
Alteromonas macleodii MIT1002 3647 nan
Alteromonas macleodii MIT1002 3648 nan VTP55584.1
Alteromonas macleodii MIT1002 3649 3.15613E-4 0.001530834 0.002124576 4.40808E-4 K14155 Methionine biosynthesis, apartate => homoserine => methionine Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities (MalY) (PDB:4DGT) VTP54879.1
Alteromonas macleodii MIT1002 3650 nan DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains (AtoC) (PDB:1ZY2) VTP54881.1
Alteromonas macleodii MIT1002 3651 0.003607328 0.008163701 0.012898829 0.004682992 K06207 nan Predicted membrane GTPase TypA/BipA involved in stress response (TypA) (PDB:5A9V) VTP54883.1
Alteromonas macleodii MIT1002 3652 nan VTP54885.1
Alteromonas macleodii MIT1002 3653 0.03819342 0.030244738 0.03240847 0.062955394 K01915 nan Glutamine synthetase (GlnA) (PDB:1F1H) VTP54887.1
Alteromonas macleodii MIT1002 3654 3.59357E-5 3.80495E-5 nan VTP54889.1
Alteromonas macleodii MIT1002 3655 2.43592E-6 2.43592E-6 K07708 nan Signal transduction histidine kinase NtrB, nitrogen specific (NtrB) (PUBMED:23893111) VTP54891.1
Alteromonas macleodii MIT1002 3656 9.37494E-6 3.12497E-5 7.49993E-6 4.68746E-6 K07712 nan DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains (AtoC) (PDB:1ZY2) VTP54893.1
Alteromonas macleodii MIT1002 3657 1.3148E-5 9.28092E-6 2.32023E-5 nan Chemotaxis protein histidine kinase CheA (CheA) (PDB:1B3Q)!!!HD-GYP domain, c-di-GMP phosphodiesterase class II (or its inactivated variant) (HDGYP) (PDB:5Z7C) (PUBMED:23475961) VTP54895.1
Alteromonas macleodii MIT1002 3658 1.33791E-4 1.72711E-4 3.64883E-5 2.37174E-5 K00655 Triacylglycerol biosynthesis 1-acyl-sn-glycerol-3-phosphate acyltransferase (PlsC) (PDB:1IUQ) VTP54897.1
Alteromonas macleodii MIT1002 3659 2.66475E-5 K09893 nan Regulator of RNase E activity RraB (RraB) (PDB:1NXI) VTP54899.1
Alteromonas macleodii MIT1002 3660 nan VTP54901.1
Alteromonas macleodii MIT1002 3661 nan Uncharacterized conserved protein VTP54903.1
Alteromonas macleodii MIT1002 3662 3.20148E-4 3.74199E-5 5.61299E-5 5.30115E-5 nan Regulator of protease activity HflC, stomatin/prohibitin superfamily (HflC) VTP54905.1
Alteromonas macleodii MIT1002 3663 8.23763E-6 4.59935E-5 1.99076E-5 1.85347E-5 nan Spermidine/putrescine-binding periplasmic protein (PotD) (PDB:1POT) VTP54907.1
Alteromonas macleodii MIT1002 3664 2.63218E-4 9.92409E-5 4.46913E-5 1.54284E-4 nan Signal transduction histidine kinase (BaeS) (PDB:1JOY)!!!CheY-like REC (receiver) domain, includes chemotaxis protein CheY  and sporulation regulator Spo0F (CheY) (PDB:6QRJ) VTP54909.1
Alteromonas macleodii MIT1002 3665 6.68408E-4 0.002723755 0.002227286 5.98617E-4 K01873 nan Valyl-tRNA synthetase (ValS) (PDB:1GAX) VTP54911.1
Alteromonas macleodii MIT1002 3666 6.2812E-6 7.95619E-5 1.7378E-4 K02339 nan DNA polymerase III, chi subunit (HolC) (PDB:1EM8) VTP54913.1
Alteromonas macleodii MIT1002 3667 0.002041671 0.001029324 0.001330934 0.003972432 K01255 nan Leucyl aminopeptidase (PepB) (PDB:3H8E) (PUBMED:19553197;23825549) VTP54915.1
Alteromonas macleodii MIT1002 3668 5.03754E-4 1.0011E-4 1.43358E-4 1.97017E-4 K07091 nan Lipopolysaccharide export LptBFGC system, permease protein LptF (LptF) (PDB:6S8H) VTP54917.1
Alteromonas macleodii MIT1002 3669 1.83513E-4 3.40454E-5 1.61923E-5 9.9645E-6 K11720 nan Lipopolysaccharide export LptBFGC system, permease protein LptF (LptF) (PDB:6S8H) VTP54919.1
Alteromonas macleodii MIT1002 3670 7.25251E-5 2.5686E-5 5.66602E-5 nan Uncharacterized membrane protein YckC, RDD family (YckC) VTP54921.1
Alteromonas macleodii MIT1002 3671 1.28188E-6 K02014 nan Outer membrane receptor for ferrienterochelin and colicins (FepA) (PDB:2HDF) (PUBMED:16468998) VTP54923.1
Alteromonas macleodii MIT1002 3672 K03088 nan DNA-directed RNA polymerase specialized sigma subunit, sigma24 family (RpoE) (PDB:2Q1Z) VTP54925.1
Alteromonas macleodii MIT1002 3673 nan Anti-sigma-K factor RskA (RskA) (PUBMED:16011798;15972856) VTP54927.1
Alteromonas macleodii MIT1002 3674 nan VTP54929.1
Alteromonas macleodii MIT1002 3675 nan VTP54931.1
Alteromonas macleodii MIT1002 3676 nan VTP54933.1
Alteromonas macleodii MIT1002 3677 nan Hydrogenase/urease accessory protein HupE (HupE) VTP54935.1
Alteromonas macleodii MIT1002 3678 1.62095E-5 6.30372E-6 2.70159E-6 nan VTP54937.1
Alteromonas macleodii MIT1002 3679 1.72781E-5 5.15314E-6 9.09377E-7 K01153 nan Type I site-specific restriction-modification system, R (restriction) subunit and related helicases ... (PDB:2W00) VTP54939.1
Alteromonas macleodii MIT1002 3680 1.11312E-5 2.89412E-5 8.90499E-6 8.90499E-6 K01154 nan Restriction endonuclease S subunit (HsdS) (PDB:1YDX) VTP54941.1
Alteromonas macleodii MIT1002 3681 1.23538E-5 6.90691E-5 6.51383E-5 3.45346E-5 K03427 nan Type I restriction-modification system, DNA methylase subunit (HsdM) (PDB:2AR0) (PUBMED:26872910) VTP54943.1
Alteromonas macleodii MIT1002 3682 nan VTP54945.1
Alteromonas macleodii MIT1002 3683 2.96083E-6 2.96083E-6 nan Predicted DNA-binding transcriptional regulator YobV, contains HTH and WYL domains (YobV) VTP54947.1
Alteromonas macleodii MIT1002 3684 2.70086E-5 5.95778E-6 2.38311E-6 K06926 nan ATPase/GTPase, AAA15 family VTP54949.1
Alteromonas macleodii MIT1002 3685 nan VTP54951.1
Alteromonas macleodii MIT1002 3686 nan Ribonuclease HI (RnhA) (PDB:1LAW) VTP54953.1
Alteromonas macleodii MIT1002 3687 nan VTP54955.1
Alteromonas macleodii MIT1002 3688 nan VTP54957.1
Alteromonas macleodii MIT1002 3689 nan AAA+-type ATPase, SpoVK/Ycf46/Vps4 family (SpoVK) (PDB:3SYL) VTP54959.1
Alteromonas macleodii MIT1002 3690 K04763 nan Site-specific recombinase XerD (XerD) (PDB:1A0P) VTP54961.1
Alteromonas macleodii MIT1002 3691 nan VTP54963.1
Alteromonas macleodii MIT1002 3692 nan VTP54965.1
Alteromonas macleodii MIT1002 3693 nan VTP50232.1
Alteromonas macleodii MIT1002 3694 6.35099E-5 1.62846E-4 4.88537E-5 nan Fe-S cluster biosynthesis and repair protein YggX (YggX) (PDB:1T07) (PUBMED:24421039) VTP50231.1
Alteromonas macleodii MIT1002 3695 K03575 nan Adenine-specific DNA glycosylase, acts on AG and A-oxoG pairs (MutY) (PDB:1KG2) VTP50230.1
Alteromonas macleodii MIT1002 3696 1.50319E-5 nan 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase MenH and related esterases, alpha/beta hydrolase fold (MenH) (PDB:4MYS) VTP50229.1
Alteromonas macleodii MIT1002 3697 7.35872E-5 2.19535E-4 5.11431E-4 9.1984E-5 K03439 nan tRNA G46 N7-methylase TrmB (TrmB) (PDB:1YZH) (PUBMED:19373903;16600901) VTP50228.1
Alteromonas macleodii MIT1002 3698 6.10672E-5 5.37391E-5 1.31905E-4 4.15257E-5 K00564 nan 16S rRNA G1207 methylase RsmC (RsmC) (PDB:1DUS) VTP50227.1
Alteromonas macleodii MIT1002 3699 2.10875E-4 7.04978E-5 9.09051E-5 1.20588E-5 K00703 Glycogen biosynthesis, glucose-1P => glycogen/starch Glycogen synthase (GlgA) (PDB:1RZU) VTP50226.1
Alteromonas macleodii MIT1002 3700 0.002337491 8.77229E-5 4.11869E-4 5.26337E-4 K02482 nan Signal transduction histidine kinase regulating C4-dicarboxylate transport system (PDB:4GCZ) VTP50225.1
Alteromonas macleodii MIT1002 3701 9.80401E-4 0.003294198 0.002745373 0.0013546 K07773 nan DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain (OmpR) (PDB:1XHF) VTP50224.1
Alteromonas macleodii MIT1002 3702 9.8742E-5 1.15669E-5 4.85246E-5 1.02409E-4 K01190 nan Beta-galactosidase/beta-glucuronidase (LacZ) (PDB:5N6U) (PUBMED:19291314) VTP50223.1
Alteromonas macleodii MIT1002 3703 nan AraC-type DNA-binding domain and AraC-containing proteins (AraC) (PDB:1BL0) VTP50222.1
Alteromonas macleodii MIT1002 3704 6.49766E-4 7.43724E-4 9.46197E-4 3.53335E-4 K03592 nan Zn-dependent protease PmbA/TldA or its inactivated homolog (TldD) (PDB:3TV9) (PUBMED:12029038) VTP50221.1
Alteromonas macleodii MIT1002 3705 3.08967E-5 1.22002E-4 1.2834E-4 4.278E-5 K09889 nan Ribosomal 50S subunit-associated protein YjgA, DUF615 family (YjgA) (PDB:2P0T) (PUBMED:16980477) VTP50220.1
Alteromonas macleodii MIT1002 3706 nan VTP50219.1
Alteromonas macleodii MIT1002 3707 2.58925E-4 0.001399049 5.94794E-4 1.17249E-4 K03568 nan Zn-dependent protease PmbA/TldA or its inactivated homolog (TldD) (PDB:3TV9) (PUBMED:12029038) VTP50218.1
Alteromonas macleodii MIT1002 3708 3.23297E-6 4.04121E-5 8.08244E-6 1.29319E-5 K11206 nan Omega-amidase YafV/Nit2, hydrolyzes alpha-ketoglutaramate (Nit2) (PUBMED:28373563) VTP50217.1
Alteromonas macleodii MIT1002 3709 6.60682E-7 2.64273E-6 nan Uncharacterized conserved protein YhdP, contains DUF3971 and AsmA2 domains (YhdR) VTP50216.1
Alteromonas macleodii MIT1002 3710 6.48714E-5 2.03624E-4 1.06317E-4 K08301 nan Ribonuclease G or E (CafA) (PDB:1SLJ) VTP50215.1
Alteromonas macleodii MIT1002 3711 K06287 nan 7-methyl-GTP pyrophosphatase and related NTP pyrophosphatases, Maf/HAM1 superfamily (Maf) (PDB:2P5X) (PUBMED:24210219) VTP50214.1
Alteromonas macleodii MIT1002 3712 K03571 nan Cell shape-determining protein MreD (MreD) VTP50213.1
Alteromonas macleodii MIT1002 3713 1.72942E-4 1.66103E-5 2.54039E-5 4.98308E-5 K03570 nan Cell shape-determining protein MreC (MreC) (PDB:2J5U) VTP50212.1
Alteromonas macleodii MIT1002 3714 7.41676E-4 4.50243E-4 0.002410869 0.001202478 K03569 nan Cell shape-determining ATPase MreB, actin-like superfamily (MreB) (PDB:1JCE) VTP50211.1
Alteromonas macleodii MIT1002 3715 4.03281E-5 K12287 nan Ca2+-binding protein, RTX toxin-related (PDB:1AF0) (PUBMED:15135544) VTP50210.1
Alteromonas macleodii MIT1002 3716 K12286 nan VTP50209.1
Alteromonas macleodii MIT1002 3717 K12285 nan Type II secretory pathway, pseudopilin PulG (PulG) (PDB:1AY2) VTP50208.1
Alteromonas macleodii MIT1002 3718 K10927 nan Type IV pilus assembly protein PilV (PilV) VTP50207.1
Alteromonas macleodii MIT1002 3719 K10926 nan Type II secretory pathway, pseudopilin PulG (PulG) (PDB:1AY2) VTP50206.1
Alteromonas macleodii MIT1002 3720 8.2764E-5 2.53465E-4 5.00032E-5 0.001099209 K10924 nan Type II secretory pathway, pseudopilin PulG (PulG) (PDB:1AY2) VTP50205.1
Alteromonas macleodii MIT1002 3721 4.05862E-5 1.12739E-4 4.50958E-6 2.93123E-5 K10925 nan Type II secretory pathway, pseudopilin PulG (PulG) (PDB:1AY2) VTP50204.1
Alteromonas macleodii MIT1002 3722 nan VTP50203.1
Alteromonas macleodii MIT1002 3723 2.13958E-6 K12278 nan Type II secretory pathway, component PulF (PulF) (PDB:2VMA) VTP50202.1
Alteromonas macleodii MIT1002 3724 6.171E-6 5.65673E-6 5.65673E-6 1.92843E-5 K12276 nan Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB (PulE) (PDB:4KSR) VTP50201.1
Alteromonas macleodii MIT1002 3725 2.15531E-6 2.69414E-5 K12284 nan Tetratricopeptide (TPR) repeat (TPR) (PDB:3AS4) VTP50200.1
Alteromonas macleodii MIT1002 3726 K12283 nan Type II secretory pathway ATPase component GspA/ExeA/MshM (ExeA) (PUBMED:21378198) VTP50199.1
Alteromonas macleodii MIT1002 3727 4.53282E-5 3.52553E-5 5.89267E-5 6.66325E-4 K12282 nan Type II secretory pathway component GspD/PulD (secretin) (PulD) (PDB:5TCQ) VTP50198.1
Alteromonas macleodii MIT1002 3728 K12281 nan VTP50197.1
Alteromonas macleodii MIT1002 3729 4.09008E-6 K12280 nan Type II secretory pathway, component PulM (PulM) (PDB:1UV7) VTP50196.1
Alteromonas macleodii MIT1002 3730 4.22773E-6 nan Type IV pilus assembly protein PilN (PilN) VTP50195.1
Alteromonas macleodii MIT1002 3731 K12279 nan Type IV pilus assembly protein, ATPase PilM (PilM) (PDB:2YCH) VTP50194.1
Alteromonas macleodii MIT1002 3732 nan VTP50193.1
Alteromonas macleodii MIT1002 3733 nan Broad specificity phosphatase PhoE (PhoE) (PDB:1EBB) VTP50192.1
Alteromonas macleodii MIT1002 3734 1.70751E-6 2.84585E-5 K00111 nan Glycerol-3-phosphate dehydrogenase (GlpA) (PDB:2RGH) VTP50191.1
Alteromonas macleodii MIT1002 3735 3.48955E-6 1.39582E-5 K02444 nan DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family (GlpR) VTP50190.1
Alteromonas macleodii MIT1002 3736 1.34694E-4 4.53924E-4 4.80626E-4 8.72247E-5 K00864 nan Glycerol kinase (GlpK) (PDB:2ZF5) VTP50189.1
Alteromonas macleodii MIT1002 3737 nan VTP54123.1
Alteromonas macleodii MIT1002 3738 nan Retron-type reverse transcriptase (YkfC) VTP53073.1
Alteromonas macleodii MIT1002 3739 nan VTP50551.1
Alteromonas macleodii MIT1002 3740 K04763 nan Site-specific recombinase XerD (XerD) (PDB:1A0P) VTP50552.1
Alteromonas macleodii MIT1002 3741 0.004945968 0.001245202 0.004430921 0.007717755 K00632 Ethylmalonyl pathway Acetyl-CoA acetyltransferase (PaaJ) (PDB:1AFW) VTP50553.1
Alteromonas macleodii MIT1002 3742 0.012524844 0.004192552 0.010628145 0.01672886 K01825 beta-Oxidation Enoyl-CoA hydratase/carnithine racemase (CaiD) (PDB:1DCI)!!!3-hydroxyacyl-CoA dehydrogenase (FadB) (PDB:5ZQZ) VTP50554.1
Alteromonas macleodii MIT1002 3743 3.79736E-5 4.09604E-5 K08309 nan Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain) (MltE) (PDB:153L) VTP50555.1
Alteromonas macleodii MIT1002 3744 0.001091765 6.47119E-4 0.001290268 7.55303E-4 K01271 nan Xaa-Pro aminopeptidase (PepP) (PDB:1A16) VTP50556.1
Alteromonas macleodii MIT1002 3745 K07238 nan Zinc transporter ZupT (ZupT) (PDB:5TSA) VTP50557.1
Alteromonas macleodii MIT1002 3746 1.25881E-5 6.92344E-5 3.37181E-4 2.69745E-6 K02523 nan Geranylgeranyl pyrophosphate synthase (IspA) (PDB:2AZJ) VTP50558.1
Alteromonas macleodii MIT1002 3747 0.010617863 0.008526164 0.010284899 0.023392878 K02888 nan Ribosomal protein L21 (RplU) (PDB:1VS6) VTP50559.1
Alteromonas macleodii MIT1002 3748 0.025925819 0.017332157 0.015642393 0.08158977 K02899 nan Ribosomal protein L27 (RpmA) (PDB:1VS6) VTP50560.1
Alteromonas macleodii MIT1002 3749 7.44197E-5 2.86288E-4 1.34411E-4 2.30094E-4 K03979 nan GTPase involved in cell partioning and DNA repair (Obg) (PDB:1LNZ) VTP50561.1
Alteromonas macleodii MIT1002 3750 3.34106E-5 4.45475E-5 nan VTP50562.1
Alteromonas macleodii MIT1002 3751 nan VTP50563.1
Alteromonas macleodii MIT1002 3752 nan Superfamily II DNA or RNA helicase (SSL2) (PDB:6JDE) VTP50564.1
Alteromonas macleodii MIT1002 3753 nan VTP50565.1
Alteromonas macleodii MIT1002 3754 3.05336E-6 9.16005E-6 1.22134E-5 nan Predicted DNA-binding transcriptional regulator YobV, contains HTH and WYL domains (YobV) VTP50566.1
Alteromonas macleodii MIT1002 3755 nan VTP50567.1
Alteromonas macleodii MIT1002 3756 nan VTP50568.1
Alteromonas macleodii MIT1002 3757 7.41165E-5 3.28787E-4 2.17334E-4 2.71668E-4 K03427 nan Type I restriction-modification system, DNA methylase subunit (HsdM) (PDB:2AR0) (PUBMED:26872910) VTP50569.1
Alteromonas macleodii MIT1002 3758 3.50625E-5 2.73488E-4 1.66898E-4 3.57637E-5 K01154 nan Restriction endonuclease S subunit (HsdS) (PDB:1YDX) VTP50570.1
Alteromonas macleodii MIT1002 3759 nan Wobble nucleotide-excising tRNase (RloC) (PUBMED:18681940) VTP50571.1
Alteromonas macleodii MIT1002 3760 2.85491E-5 2.82099E-4 9.58232E-5 1.05999E-5 K01153 nan Type I site-specific restriction-modification system, R (restriction) subunit and related helicases ... (PDB:2W00) VTP50572.1
Alteromonas macleodii MIT1002 3761 nan VTP50573.1
Alteromonas macleodii MIT1002 3762 3.58822E-4 1.29715E-4 9.43382E-5 6.3173E-5 nan VTP50574.1
Alteromonas macleodii MIT1002 3763 nan Uncharacterized conserved protein, DUF2384 family VTP50575.1
Alteromonas macleodii MIT1002 3764 nan VTP50576.1
Alteromonas macleodii MIT1002 3765 nan VTP50577.1
Alteromonas macleodii MIT1002 3766 nan VTP50578.1
Alteromonas macleodii MIT1002 3767 nan VTP50579.1
Alteromonas macleodii MIT1002 3768 nan Uncharacterized conserved protein, contains a phytase-like domain VTP50580.1
Alteromonas macleodii MIT1002 3769 nan VTP50581.1
Alteromonas macleodii MIT1002 3770 nan VTP50582.1
Alteromonas macleodii MIT1002 3771 nan Hydrogenase/urease accessory protein HupE (HupE) VTP50583.1
Alteromonas macleodii MIT1002 3772 K15726 nan Cu/Ag efflux pump CusA (CusA) (PDB:3K07) VTP50584.1
Alteromonas macleodii MIT1002 3773 K15727 nan Multidrug efflux pump subunit AcrA (membrane-fusion protein) (AcrA) (PDB:1T5E) VTP50585.1
Alteromonas macleodii MIT1002 3774 K15725 nan Outer membrane protein TolC (TolC) (PDB:1EK9) VTP50586.1
Alteromonas macleodii MIT1002 3775 nan Signal transducer regulating beta-lactamase production, contains metallopeptidase domain (MecR1) VTP50587.1
Alteromonas macleodii MIT1002 3776 K02171 beta-Lactam resistance, Bla system Transcriptional regulator, CopY/TcrY family (CopY) (PDB:1OKR) VTP50588.1
Alteromonas macleodii MIT1002 3777 nan VTP50589.1
Alteromonas macleodii MIT1002 3778 0.001177912 4.81534E-4 4.19521E-4 0.008084589 nan Fermentation-respiration switch esterase FrsA, DUF1100 family (FrsA) VTP52542.1
Alteromonas macleodii MIT1002 3779 1.42408E-5 2.14798E-4 9.61251E-5 1.42408E-5 nan NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family (FabG) (PDB:6L1H) VTP52540.1
Alteromonas macleodii MIT1002 3780 2.24463E-4 0.001145026 9.29541E-4 1.98056E-4 K01886 nan Glutamyl- or glutaminyl-tRNA synthetase (GlnS) (PDB:1EUQ) VTP52538.1
Alteromonas macleodii MIT1002 3781 1.0255E-5 4.87113E-5 4.27292E-5 2.30738E-5 K02529 nan DNA-binding transcriptional regulator, LacI/PurR family (PurR) (PDB:1BDH) VTP52536.1
Alteromonas macleodii MIT1002 3782 1.83656E-4 1.00648E-4 8.35269E-5 8.79368E-5 nan Glycosidase/amylase (phosphorylase) (AmyA) (PDB:2P67) (PUBMED:29684280) VTP52534.1
Alteromonas macleodii MIT1002 3783 1.30805E-5 1.01077E-5 3.38904E-5 2.22964E-5 K16211 nan Na+/melibiose symporter or related transporter (MelB) (PDB:4M64) VTP52532.1
Alteromonas macleodii MIT1002 3784 1.86037E-5 2.7225E-6 3.40313E-6 K21575 nan Glycosidase/amylase (phosphorylase) (AmyA) (PDB:2P67) (PUBMED:29684280) VTP52530.1
Alteromonas macleodii MIT1002 3785 3.33709E-5 1.58737E-4 5.14092E-5 6.76439E-6 nan Glycosidase/amylase (phosphorylase) (AmyA) (PDB:2P67) (PUBMED:29684280) VTP52528.1
Alteromonas macleodii MIT1002 3786 nan N-acyl-homoserine lactone synthase LasI (autoinducer biosynthesis) (LasI) (PDB:1K4J) VTP52526.1
Alteromonas macleodii MIT1002 3787 nan tRNA(Leu) C34 or U34 (ribose-2'-O)-methylase TrmL, contains SPOUT domain (TrmL) (PDB:4JAK) VTP52524.1
Alteromonas macleodii MIT1002 3788 K07001 nan Predicted phospholipase, patatin/cPLA2 family (YjjU) VTP52522.1
Alteromonas macleodii MIT1002 3789 4.26582E-6 1.68601E-5 1.82821E-6 7.61753E-6 K01200 Glycogen degradation, glycogen => glucose-6P Pullulanase/glycogen debranching enzyme (PulA) (PDB:2WSK) VTP52520.1
Alteromonas macleodii MIT1002 3790 5.53932E-5 4.03909E-6 K02014 nan Outer membrane receptor for ferrienterochelin and colicins (FepA) (PDB:2HDF) (PUBMED:16468998) VTP52518.1
Alteromonas macleodii MIT1002 3791 3.53369E-5 2.14918E-4 4.98192E-5 3.47576E-5 K14266 Rebeccamycin biosynthesis, tryptophan => rebeccamycin Glycine/D-amino acid oxidase (deaminating) (DadA) (PDB:3AWI) VTP52516.1
Alteromonas macleodii MIT1002 3792 1.69374E-4 0.001340301 7.01869E-4 9.41711E-4 K02014 nan Outer membrane receptor protein, Fe transport (CirA) (PDB:1BY3)!!!Outer membrane receptor for ferrienterochelin and colicins (FepA) (PDB:2HDF) (PUBMED:16468998) VTP52514.1
Alteromonas macleodii MIT1002 3793 0.00570578 0.018220088 0.014627821 0.019487085 K01902 Citrate cycle (TCA cycle, Krebs cycle) Succinyl-CoA synthetase, alpha subunit (SucD) (PDB:1CQI) VTP52512.1
Alteromonas macleodii MIT1002 3794 0.015641255 0.059284773 0.024412265 0.05643476 K01903 Citrate cycle (TCA cycle, Krebs cycle) Succinyl-CoA synthetase, beta subunit (SucC) (PDB:1SCU) VTP52510.1
Alteromonas macleodii MIT1002 3795 0.013465567 0.027939873 0.014009272 0.041099496 K00658 Citrate cycle (TCA cycle, Krebs cycle) Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component (AceF) (PDB:1B5S) VTP52508.1
Alteromonas macleodii MIT1002 3796 0.023096425 0.020300994 0.020060003 0.0382094 K00164 Citrate cycle (TCA cycle, Krebs cycle) 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes (SucA) (PDB:2JGD) VTP52506.1
Alteromonas macleodii MIT1002 3797 0.013002962 0.010742441 0.010335051 0.06431678 K00240 Citrate cycle (TCA cycle, Krebs cycle) Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit (SdhB/FrdB) (PDB:6LUM) VTP52504.1
Alteromonas macleodii MIT1002 3798 0.050287392 0.02321828 0.03288983 0.064775094 K00239 Citrate cycle (TCA cycle, Krebs cycle) Succinate dehydrogenase/fumarate reductase, flavoprotein subunit (SdhA) (PDB:1KF6) VTP52502.1
Alteromonas macleodii MIT1002 3799 0.001962646 4.23116E-4 2.80378E-4 5.54384E-4 K00242 Citrate cycle (TCA cycle, Krebs cycle) Succinate dehydrogenase, hydrophobic anchor subunit (SdhD) (PDB:2WS3) VTP52500.1
Alteromonas macleodii MIT1002 3800 0.010282925 5.88609E-4 0.004947623 0.00998862 K00241 Citrate cycle (TCA cycle, Krebs cycle) Succinate dehydrogenase/fumarate reductase, cytochrome b subunit (SdhC) (PDB:2WU2) (PUBMED:18511537) VTP52498.1
Alteromonas macleodii MIT1002 3801 0.02362498 0.007979828 0.014056773 0.027565582 K01647 Citrate cycle (TCA cycle, Krebs cycle) Citrate synthase (GltA) (PDB:3TQG) (PUBMED:25211225) VTP52496.1
Alteromonas macleodii MIT1002 3802 nan VTP52494.1
Alteromonas macleodii MIT1002 3803 nan RNA recognition motif (RRM) domain (RRM) (PDB:1HL6) VTP55241.1
Alteromonas macleodii MIT1002 3804 2.01228E-6 8.04913E-6 2.51535E-5 nan VTP55243.1
Alteromonas macleodii MIT1002 3805 7.22768E-6 1.36523E-5 9.6369E-6 K00557 nan tRNA/tmRNA/rRNA uracil-C5-methylase, TrmA/RlmC/RlmD family (TrmA) (PDB:1UWV) VTP55245.1
Alteromonas macleodii MIT1002 3806 2.07258E-5 1.7765E-5 1.7765E-5 K22105 nan DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA (AcrR) (PDB:2QOP) VTP55247.1
Alteromonas macleodii MIT1002 3807 3.83013E-5 1.52424E-5 2.34498E-6 K00507 nan Fatty-acid desaturase (OLE1) (PDB:4YMK) VTP55249.1
Alteromonas macleodii MIT1002 3808 6.06076E-4 5.42246E-4 2.3363E-4 3.81121E-4 K00322 nan Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex or glutathione oxidoreductase (Lpd) (PDB:6QKG) VTP55251.1
Alteromonas macleodii MIT1002 3809 nan VTP55253.1
Alteromonas macleodii MIT1002 3810 K21929 nan Uracil-DNA glycosylase (Udg4) (PDB:3IKB) VTP55255.1
Alteromonas macleodii MIT1002 3811 5.24139E-4 5.25722E-4 5.15041E-4 3.14484E-4 K21023 nan GGDEF domain, diguanylate cyclase (c-di-GMP synthetase) or its enzymatically inactive variants (GGDEF) (PDB:6D9M)!!!EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant) (EAL) (PDB:2BAS) VTP55257.1
Alteromonas macleodii MIT1002 3812 2.03827E-5 1.16472E-5 1.35884E-5 1.16472E-5 nan VTP55259.1
Alteromonas macleodii MIT1002 3813 4.84598E-5 3.0967E-4 1.43015E-4 3.19125E-5 K00390 Assimilatory sulfate reduction, sulfate => H2S 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme (CysD) (PDB:1ZUN) VTP55261.1
Alteromonas macleodii MIT1002 3814 0.00732448 0.009995834 0.009594261 0.002581319 K00381 Assimilatory sulfate reduction, sulfate => H2S Sulfite reductase, beta subunit (hemoprotein) (CysI) (PDB:1AOP) VTP55263.1
Alteromonas macleodii MIT1002 3815 0.001678573 0.00274579 0.001800747 0.004395389 K00380 Assimilatory sulfate reduction, sulfate => H2S Flavoprotein (flavin reductase) subunit CysJ of sulfite and N-hydroxylaminopurine reductases (CysJ) (PDB:1YKG) (PUBMED:20118259) VTP55265.1
Alteromonas macleodii MIT1002 3816 2.11375E-4 1.06855E-4 2.24221E-4 nan VTP55267.1
Alteromonas macleodii MIT1002 3817 0.002043863 4.3169E-4 7.82548E-4 0.002091828 nan Uncharacterized conserved protein, DUF2333 domain VTP55269.1
Alteromonas macleodii MIT1002 3818 nan VTP55271.1
Alteromonas macleodii MIT1002 3819 K03973 nan Phage shock protein PspC (stress-responsive transcriptional regulator) (PspC) VTP55273.1
Alteromonas macleodii MIT1002 3820 3.96111E-6 K03969 nan Phage shock protein A (PspA) (PDB:4WHE) VTP55275.1
Alteromonas macleodii MIT1002 3821 nan VTP55277.1
Alteromonas macleodii MIT1002 3822 1.08564E-5 4.88538E-5 4.52349E-5 2.44269E-5 K05539 nan tRNA-dihydrouridine synthase (DusA) (PDB:1VHN) VTP55279.1
Alteromonas macleodii MIT1002 3823 nan Integrase/recombinase, includes phage integrase (FimB) VTP55281.1
Alteromonas macleodii MIT1002 3824 nan Site-specific recombinase XerD (XerD) (PDB:1A0P) VTP55283.1
Alteromonas macleodii MIT1002 3825 nan VTP55285.1
Alteromonas macleodii MIT1002 3826 nan VTP55287.1
Alteromonas macleodii MIT1002 3827 nan VTP55289.1
Alteromonas macleodii MIT1002 3828 2.04981E-5 3.89463E-5 1.84483E-5 2.04981E-6 K01154 nan Restriction endonuclease S subunit (HsdS) (PDB:1YDX) VTP55291.1
Alteromonas macleodii MIT1002 3829 1.78676E-4 9.05059E-4 5.38364E-4 2.18966E-5 K03427 nan Type I restriction-modification system, DNA methylase subunit (HsdM) (PDB:2AR0) (PUBMED:26872910) VTP55293.1
Alteromonas macleodii MIT1002 3830 3.82334E-6 1.53443E-4 9.45638E-5 9.55836E-6 K01153 nan Type I site-specific restriction endonuclease, part of a restriction-modification system (HsdR) (PDB:3H1T) (PUBMED:21169490) VTP55295.1
Alteromonas macleodii MIT1002 3831 nan VTP55297.1
Alteromonas macleodii MIT1002 3832 nan VTP55301.1
Alteromonas macleodii MIT1002 3833 nan VTP55303.1
Alteromonas macleodii MIT1002 3834 5.29739E-6 nan VTP55305.1
Alteromonas macleodii MIT1002 3835 6.65794E-5 3.76131E-5 7.43614E-5 6.48501E-5 nan VTP55307.1
Alteromonas macleodii MIT1002 3836 3.81161E-4 5.06858E-4 7.60286E-4 0.001072492 K06915 nan Archaeal DNA helicase HerA or a related bacterial ATPase, contains HAS-barrel and ATPase domains (HerA) (PDB:4D2I) VTP55309.1
Alteromonas macleodii MIT1002 3837 nan DNA replication protein DnaC (DnaC) (PDB:2QGZ) VTP55311.1
Alteromonas macleodii MIT1002 3838 1.65295E-6 5.04149E-5 nan Signal transduction histidine kinase (BaeS) (PDB:1JOY) VTP52066.1
Alteromonas macleodii MIT1002 3839 nan Ser/Thr protein kinase RdoA involved in Cpx stress response, MazF antagonist (SrkA) (PDB:1ZYL) VTP52068.1
Alteromonas macleodii MIT1002 3840 0.00325116 0.00621102 0.002422555 0.005109468 K08300 nan Ribonuclease G or E (CafA) (PDB:1SLJ) VTP52070.1
Alteromonas macleodii MIT1002 3841 4.30786E-5 1.29236E-4 1.20808E-4 1.40474E-4 K06179 nan Pseudouridine synthase RluA, 23S rRNA- or tRNA-specific (RluA) (PDB:2I82) VTP52072.1
Alteromonas macleodii MIT1002 3842 3.36779E-5 3.36779E-5 3.74199E-6 K01091 nan Phosphoglycolate phosphatase, HAD superfamily (Gph) (PDB:2NYV) VTP52074.1
Alteromonas macleodii MIT1002 3843 K06287 nan 7-methyl-GTP pyrophosphatase and related NTP pyrophosphatases, Maf/HAM1 superfamily (Maf) (PDB:2P5X) (PUBMED:24210219) VTP52076.1
Alteromonas macleodii MIT1002 3844 1.90133E-5 4.75334E-6 K07040 nan 23S rRNA accumulation protein YceD (essential in plants, uncharacterized in bacteria) (YceD) (PUBMED:27574185) VTP52078.1
Alteromonas macleodii MIT1002 3845 0.018445777 0.010369207 0.009887648 0.003965005 K02911 nan Ribosomal protein L32 (RpmF) (PDB:1VS6) (PUBMED:17114934) VTP52080.1
Alteromonas macleodii MIT1002 3846 9.74123E-6 1.06268E-5 K03621 nan Acyl-ACP:phosphate acyltransferase (fatty acid/phospholipid biosynthesis) (PlsX) (PDB:2GK3) (PUBMED:18992246) VTP52082.1
Alteromonas macleodii MIT1002 3847 8.89412E-4 0.00191671 0.001251021 8.02663E-4 K00648 Fatty acid biosynthesis, initiation 3-oxoacyl-[acyl-carrier-protein] synthase III (FabH) (PDB:1UB7) VTP52084.1
Alteromonas macleodii MIT1002 3848 4.76205E-4 0.001223715 9.07826E-4 4.80948E-4 K00645 Fatty acid biosynthesis, initiation Malonyl CoA-acyl carrier protein transacylase (FabD) (PDB:1YXC) VTP52086.1
Alteromonas macleodii MIT1002 3849 1.57285E-4 0.001783757 7.7451E-4 3.30656E-4 K00059 Fatty acid biosynthesis, elongation NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family (FabG) (PDB:6L1H) VTP52088.1
Alteromonas macleodii MIT1002 3850 3.48778E-4 8.1258E-4 8.07015E-4 0.003127876 K02078 Aurachin biosynthesis, anthranilate => aurachin A Acyl carrier protein (AcpP) (PDB:1ACP) VTP52090.1
Alteromonas macleodii MIT1002 3851 0.001093517 8.55178E-4 0.002061106 0.001503676 K09458 Fatty acid biosynthesis, elongation 3-oxoacyl-(acyl-carrier-protein) synthase (FabB) (PDB:2UV8) (PUBMED:21652641) VTP52092.1
Alteromonas macleodii MIT1002 3852 1.7608E-5 1.7608E-5 3.88413E-5 K02619 nan Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase (IlvE) (PDB:1A3G) VTP52094.1
Alteromonas macleodii MIT1002 3853 4.32334E-5 2.8534E-5 2.594E-6 2.59401E-5 K07082 nan Endolytic transglycosylase MltG, terminates peptidoglycan polymerization (MltG) (PDB:2R1F) (PUBMED:26507882) VTP52096.1
Alteromonas macleodii MIT1002 3854 1.37401E-4 1.00761E-4 1.96287E-5 K00943 Pyrimidine deoxyribonuleotide biosynthesis, CDP/CTP => dCDP/dCTP,dTDP/dTTP Thymidylate kinase (Tmk) (PDB:3LV8) VTP52098.1
Alteromonas macleodii MIT1002 3855 2.98091E-6 2.98091E-6 K02341 nan DNA polymerase III, delta prime subunit (HolB) (PDB:1A5T) VTP52100.1
Alteromonas macleodii MIT1002 3856 3.7204E-5 4.22773E-5 K03424 nan 3'->5' ssDNA/RNA exonuclease TatD (TatD) (PDB:1J6O) (PUBMED:10747959;25114049) VTP52102.1
Alteromonas macleodii MIT1002 3857 K00275 Pyridoxal-P biosynthesis, erythrose-4P => pyridoxal-P Uncharacterized conserved protein (PDB:2I51) VTP52104.1
Alteromonas macleodii MIT1002 3858 nan Uncharacterized conserved protein YbjT, contains NAD(P)-binding and DUF2867 domains (YbjT) (PDB:5L3Z) VTP52106.1
Alteromonas macleodii MIT1002 3859 8.84675E-7 8.84675E-7 nan GGDEF domain, diguanylate cyclase (c-di-GMP synthetase) or its enzymatically inactive variants (GGDEF) (PDB:6D9M)!!!Periplasmic ligand-binding sensor domain (PDB:4A2L) VTP52108.1
Alteromonas macleodii MIT1002 3860 0.005642366 0.002732907 0.002244854 0.004882956 K01283 nan Oligoendopeptidase F (PepF) (PDB:3CE2) VTP52110.1
Alteromonas macleodii MIT1002 3861 nan Predicted gamma-glutamylamine cyclotransferase YtfP, GGCT/AIG2-like family (YtfP) (PDB:1V30) (PUBMED:16754964;20110353) VTP52112.1
Alteromonas macleodii MIT1002 3862 K09940 nan Uncharacterized Tic20-related protein, DUF4870 domain (Tic20a) (PUBMED:9817756;20100520) VTP52114.1
Alteromonas macleodii MIT1002 3863 nan VTP52116.1
Alteromonas macleodii MIT1002 3864 nan NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family (FabG) (PDB:6L1H) VTP52118.1
Alteromonas macleodii MIT1002 3865 K01563 nan 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase MenH and related esterases, alpha/beta hydrolase fold (MenH) (PDB:4MYS) VTP52120.1
Alteromonas macleodii MIT1002 3866 1.2438E-6 2.4876E-6 7.0482E-6 1.80351E-5 K07516 Phenylacetate degradation, phenylaxetate => acetyl-CoA/succinyl-CoA Enoyl-CoA hydratase/carnithine racemase (CaiD) (PDB:1DCI)!!!3-hydroxyacyl-CoA dehydrogenase (FadB) (PDB:5ZQZ) VTP52122.1
Alteromonas macleodii MIT1002 3867 2.23758E-6 2.79697E-5 K00626 Ethylmalonyl pathway Acetyl-CoA acetyltransferase (PaaJ) (PDB:1AFW) VTP52124.1
Alteromonas macleodii MIT1002 3868 3.76802E-5 9.29769E-6 1.46806E-6 nan Acyl-CoA dehydrogenase related to the alkylation response protein AidB (CaiA) (PDB:1BUC) VTP52126.1
Alteromonas macleodii MIT1002 3869 nan VTP52128.1
Alteromonas macleodii MIT1002 3870 nan VTP52130.1
Alteromonas macleodii MIT1002 3871 nan Transposase VTP53646.1
Alteromonas macleodii MIT1002 3872 nan Lactoylglutathione lyase-related enzyme, vicinal oxygen chelate (VOC) family (VOC) (PDB:3OXH) (PUBMED:31710815) VTP51734.1
Alteromonas macleodii MIT1002 3873 1.80636E-5 4.87716E-4 9.03177E-5 5.04959E-4 K00457 Tyrosine degradation, tyrosine => homogentisate 4-hydroxyphenylpyruvate dioxygenase and related hemolysins (HppD) VTP51736.1
Alteromonas macleodii MIT1002 3874 4.05339E-4 7.88914E-5 4.25062E-4 0.002196379 K00451 Tyrosine degradation, tyrosine => homogentisate Homogentisate 1,2-dioxygenase (HmgA) (PDB:1EY2) VTP51738.1
Alteromonas macleodii MIT1002 3875 nan DNA-binding transcriptional regulator, MarR family (MarR) (PDB:1JGS) VTP51740.1
Alteromonas macleodii MIT1002 3876 2.2107E-5 4.91266E-6 2.9476E-5 nan VTP51742.1
Alteromonas macleodii MIT1002 3877 K21023 nan Cyclic di-GMP metabolism protein, combines GGDEF and EAL domains with a 6TM membrane domain VTP51744.1
Alteromonas macleodii MIT1002 3878 1.68409E-4 4.77917E-5 3.91437E-5 1.70685E-5 K18765 nan GGDEF domain, diguanylate cyclase (c-di-GMP synthetase) or its enzymatically inactive variants (GGDEF) (PDB:6D9M)!!!EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant) (EAL) (PDB:2BAS) VTP51746.1
Alteromonas macleodii MIT1002 3879 K13985 nan L-ascorbate lactonase UlaG, metallo-beta-lactamase superfamily (UlaG) (PDB:2WYM) VTP51748.1
Alteromonas macleodii MIT1002 3880 2.88213E-4 5.34263E-5 4.4185E-5 5.63142E-5 nan Multidrug efflux pump subunit AcrB (AcrB) (PDB:1IWG) VTP51750.1
Alteromonas macleodii MIT1002 3881 7.07537E-4 3.49881E-5 1.88158E-4 4.30353E-4 K18302 Multidrug resistance, efflux pump MexJK-OprM Multidrug efflux pump subunit AcrA (membrane-fusion protein) (AcrA) (PDB:1T5E) VTP51752.1
Alteromonas macleodii MIT1002 3882 1.37187E-6 K03455 nan Kef-type K+ transport system, membrane component KefB (KefB) (PDB:4BWZ)!!!Voltage-gated potassium channel Kch (Kch) (PDB:3FWZ) VTP51754.1
Alteromonas macleodii MIT1002 3883 K11748 nan Putative NADPH-quinone reductase (modulator of drug activity B) (MdaB) (PDB:1D4A) VTP51756.1
Alteromonas macleodii MIT1002 3884 K12976 nan VTP51758.1
Alteromonas macleodii MIT1002 3885 8.37492E-5 1.23161E-4 nan DNA-binding transcriptional regulator, HxlR family (HxlR) (PDB:1YYV) VTP51760.1
Alteromonas macleodii MIT1002 3886 9.66338E-6 nan Quinol monooxygenase YgiN (YgiN) (PDB:1R6Y) (PUBMED:15613473) VTP51762.1
Alteromonas macleodii MIT1002 3887 2.0691E-6 8.2764E-6 8.2764E-6 nan GGDEF domain, diguanylate cyclase (c-di-GMP synthetase) or its enzymatically inactive variants (GGDEF) (PDB:6D9M)!!!PAS domain (PAS) (PDB:2MWG) VTP51764.1
Alteromonas macleodii MIT1002 3888 1.3292E-5 8.46488E-5 9.79408E-6 3.35797E-5 nan Uncharacterized membrane protein VTP51766.1
Alteromonas macleodii MIT1002 3889 2.31771E-5 K01487 nan Cytosine/adenosine deaminase or related metal-dependent hydrolase (SsnA) (PDB:3O7U) VTP51768.1
Alteromonas macleodii MIT1002 3890 K07127 Purine degradation, xanthine => urea 5-hydroxyisourate hydrolase (purine catabolism), transthyretin-related family (HiuH) (PDB:2IGL) VTP51770.1
Alteromonas macleodii MIT1002 3891 K16840 Purine degradation, xanthine => urea 2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU) decarboxylase (uric acid degradation) (PucL) (PDB:2O70) VTP51772.1
Alteromonas macleodii MIT1002 3892 K07402 nan Molybdoenzyme maturation factor PaoD (Mo cofactor insertion), XdhC/CoxF family (XdhC) (PDB:2WE7) (PUBMED:24498065) VTP51774.1
Alteromonas macleodii MIT1002 3893 4.46379E-6 1.11595E-6 1.78552E-5 K13482 Purine degradation, xanthine => urea Xanthine dehydrogenase, molybdopterin-binding subunit XdhB (XdhB) VTP51776.1
Alteromonas macleodii MIT1002 3894 K13481 Purine degradation, xanthine => urea Xanthine dehydrogenase, Fe-S cluster and FAD-binding subunit XdhA (XdhA) VTP51778.1
Alteromonas macleodii MIT1002 3895 1.0273E-5 1.17797E-4 4.10919E-6 K09017 nan DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA (AcrR) (PDB:2QOP) VTP51780.1
Alteromonas macleodii MIT1002 3896 1.61265E-5 2.84585E-6 K16842 Purine degradation, xanthine => urea Peptidoglycan/xylan/chitin deacetylase, PgdA/NodB/CDA1 family (CDA1) (PDB:1NY1) VTP51782.1
Alteromonas macleodii MIT1002 3897 nan VTP51784.1
Alteromonas macleodii MIT1002 3898 1.98503E-6 1.98503E-6 K06901 nan Xanthine/guanine/uracil/vitamin C permease GhxP/GhxQ, nucleobase:cation symporter 2 ( NCS2) family (NCS2) (PUBMED:24169576;24214977) VTP51786.1
Alteromonas macleodii MIT1002 3899 K21053 nan Adenosine deaminase (Add) (PDB:1A4L) VTP51788.1
Alteromonas macleodii MIT1002 3900 nan VTP51620.1
Alteromonas macleodii MIT1002 3901 nan VTP51622.1
Alteromonas macleodii MIT1002 3902 nan VTP51624.1
Alteromonas macleodii MIT1002 3903 nan VTP51626.1
Alteromonas macleodii MIT1002 3904 0.011697783 0.011954522 0.006599031 0.012422351 K02014 nan Outer membrane receptor for ferrienterochelin and colicins (FepA) (PDB:2HDF) (PUBMED:16468998) VTP51628.1
Alteromonas macleodii MIT1002 3905 K10806 nan Acyl-CoA hydrolase (YciA) (PDB:5DM5) VTP51630.1
Alteromonas macleodii MIT1002 3906 nan FMN reductase RutF, DIM6/NTAB family (RutF) (PDB:1EJE) VTP51632.1
Alteromonas macleodii MIT1002 3907 1.00845E-5 K07167 nan Anti-sigma factor ChrR, cupin superfamily (ChrR) (PDB:2Q1Z) VTP51634.1
Alteromonas macleodii MIT1002 3908 4.69748E-6 K03310 nan Na+/alanine symporter (AlsT) (PDB:6CSE) VTP51636.1
Alteromonas macleodii MIT1002 3909 2.64074E-6 nan Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family (PpiB) (PDB:4DGD) VTP51638.1
Alteromonas macleodii MIT1002 3910 2.39827E-4 0.00125324 0.001904085 1.18702E-4 K06942 nan Ribosome-binding ATPase YchF, GTP1/OBG family (GTP1) (PDB:2DWQ) (PUBMED:21527254) VTP51640.1
Alteromonas macleodii MIT1002 3911 4.10068E-5 2.58191E-5 K01056 nan Peptidyl-tRNA hydrolase (Pth) (PDB:1RYB) (PUBMED:11835511) VTP51642.1
Alteromonas macleodii MIT1002 3912 0.022966841 0.007037731 0.015086036 0.11718407 K02897 nan Ribosomal protein L25 (general stress protein Ctc) (RplY) (PDB:1B75) VTP51644.1
Alteromonas macleodii MIT1002 3913 1.34678E-4 2.37667E-4 1.56684E-4 5.41353E-5 K12957 nan D-arabinose 1-dehydrogenase, Zn-dependent alcohol dehydrogenase family (AdhP) (PDB:5O8Q) VTP51646.1
Alteromonas macleodii MIT1002 3914 6.2655E-4 3.42587E-4 2.01522E-4 2.00606E-4 nan Chagasin-like inhibitor of cysteine peptidase, I42 family (ICP) (PUBMED:12142451;17561110) VTP51648.1
Alteromonas macleodii MIT1002 3915 0.006540818 0.005841046 0.009221725 0.004994248 K00948 PRPP biosynthesis, ribose 5P => PRPP Phosphoribosylpyrophosphate synthetase (PrsA) (PDB:1DKR) VTP51650.1
Alteromonas macleodii MIT1002 3916 K00919 C5 isoprenoid biosynthesis, non-mevalonate pathway 4-diphosphocytidyl-2C-methyl-D-erythritol kinase (IspE) (PDB:1OJ4) VTP51652.1
Alteromonas macleodii MIT1002 3917 3.80495E-5 4.22773E-6 1.69109E-5 5.28466E-5 K02494 nan Outer membrane lipoprotein LolB, involved in outer membrane biogenesis (LolB) (PDB:1IWM) VTP51654.1
Alteromonas macleodii MIT1002 3918 3.45663E-5 1.03008E-4 1.01625E-4 6.32564E-5 K02492 Siroheme biosynthesis, glutamyl-tRNA => siroheme Glutamyl-tRNA reductase (HemA) (PDB:2XOE) VTP51656.1
Alteromonas macleodii MIT1002 3919 5.30219E-4 8.25777E-4 9.52445E-4 3.55645E-4 K02835 nan Protein chain release factor RF1 (PrfA) (PDB:1RQ0) VTP51658.1
Alteromonas macleodii MIT1002 3920 K02493 nan Methylase of polypeptide chain release factors (HemK) (PDB:1NV8) VTP51660.1
Alteromonas macleodii MIT1002 3921 1.97294E-5 2.86922E-4 4.13754E-4 2.87486E-5 K07814 nan Response regulator c-di-GMP phosphodiesterase, RpfG family, contains REC and HD-GYP domains (RpfG) VTP51662.1
Alteromonas macleodii MIT1002 3922 nan Uncharacterized membrane protein SirB2 (SirB2) VTP51664.1
Alteromonas macleodii MIT1002 3923 3.03444E-4 8.1744E-4 7.16292E-4 2.24486E-4 K01627 CMP-KDO biosynthesis 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase (KdsA) (PDB:1G7U) VTP51666.1
Alteromonas macleodii MIT1002 3924 nan VTP51668.1
Alteromonas macleodii MIT1002 3925 2.93122E-6 3.66403E-5 2.05186E-5 7.32806E-6 K03566 nan DNA-binding transcriptional regulator, LysR family (LysR) (PDB:2FYI) VTP51670.1
Alteromonas macleodii MIT1002 3926 7.64666E-6 K07020 nan Predicted hydrolase of the alpha/beta-hydrolase fold VTP51672.1
Alteromonas macleodii MIT1002 3927 nan Uncharacterized membrane protein YgdD, TMEM256/DUF423 family (YgdD) VTP51674.1
Alteromonas macleodii MIT1002 3928 2.40923E-6 K06968 nan 23S rRNA C2498 (ribose-2'-O)-methylase RlmM (RlmM) (PDB:4AUK) VTP51676.1
Alteromonas macleodii MIT1002 3929 0.033169653 0.055716462 0.07829575 0.07911776 K02355 nan Translation elongation factor EF-G, a GTPase (FusA) (PDB:1DAR) VTP51678.1
Alteromonas macleodii MIT1002 3930 nan Transposase InsO and inactivated derivatives (Tra5) VTP56524.1
Alteromonas macleodii MIT1002 3931 K19954 nan Alcohol dehydrogenase, class IV (EutG) (PDB:6AHC) VTP50361.1
Alteromonas macleodii MIT1002 3932 1.33342E-4 0.001574815 6.96597E-4 1.9484E-4 nan Glucose/arabinose dehydrogenase, beta-propeller fold (YliI) (PDB:1C9U) VTP50360.1
Alteromonas macleodii MIT1002 3933 1.71584E-5 1.0724E-5 K06152 nan VTP50359.1
Alteromonas macleodii MIT1002 3934 3.2395E-5 2.58115E-4 2.07955E-4 nan Choline dehydrogenase or related flavoprotein (BetA) (PDB:1B4V) VTP50358.1
Alteromonas macleodii MIT1002 3935 2.84585E-6 1.61265E-5 4.55336E-5 K01816 nan Hydroxypyruvate/dehydroerythronate isomerase, Hyi/OtnI family (Hyi) (PDB:1K77) (PUBMED:27402745) VTP50357.1
Alteromonas macleodii MIT1002 3936 K05820 nan Na+/melibiose symporter or related transporter (MelB) (PDB:4M64) VTP50356.1
Alteromonas macleodii MIT1002 3937 9.90836E-6 7.101E-5 1.46974E-4 8.91753E-5 nan Sugar phosphate isomerase/epimerase (YcjR) (PDB:3KTC) (PUBMED:30742415) VTP50355.1
Alteromonas macleodii MIT1002 3938 2.21369E-5 1.36638E-4 3.12206E-4 5.95405E-5 nan Predicted dehydrogenase (MviM) (PDB:3UUW) VTP50354.1
Alteromonas macleodii MIT1002 3939 2.63284E-6 K05499 nan DNA-binding transcriptional regulator, LacI/PurR family (PurR) (PDB:1BDH) VTP50353.1
Alteromonas macleodii MIT1002 3940 3.23637E-5 1.96956E-4 3.68021E-4 1.10961E-5 nan Sugar phosphate isomerase/epimerase (YcjR) (PDB:3KTC) (PUBMED:30742415) VTP50352.1
Alteromonas macleodii MIT1002 3941 nan VTP50351.1
Alteromonas macleodii MIT1002 3942 nan Type I restriction-modification system, DNA methylase subunit (HsdM) (PDB:2AR0) (PUBMED:26872910) VTP50350.1
Alteromonas macleodii MIT1002 3943 2.08695E-5 2.84585E-6 nan VTP50349.1
Alteromonas macleodii MIT1002 3944 1.25029E-5 3.42671E-5 2.50057E-5 5.55682E-6 nan VTP50348.1
Alteromonas macleodii MIT1002 3945 nan VTP50347.1
Alteromonas macleodii MIT1002 3946 K01091 nan Phosphoglycolate phosphatase, HAD superfamily (Gph) (PDB:2NYV) VTP50346.1
Alteromonas macleodii MIT1002 3947 nan Permease of the drug/metabolite transporter (DMT) superfamily (RhaT) (PDB:5I20) VTP50345.1
Alteromonas macleodii MIT1002 3948 3.68483E-4 1.11573E-4 1.21849E-4 1.94518E-4 nan GGDEF domain, diguanylate cyclase (c-di-GMP synthetase) or its enzymatically inactive variants (GGDEF) (PDB:6D9M) VTP50344.1
Alteromonas macleodii MIT1002 3949 K01194 nan Neutral trehalase (TreA) (PDB:2JF4) VTP50343.1
Alteromonas macleodii MIT1002 3950 K08174 nan Fucose permease (FucP) (PDB:3O7P) VTP50342.1
Alteromonas macleodii MIT1002 3951 5.1126E-6 2.30067E-5 K02529 nan DNA-binding transcriptional regulator, LacI/PurR family (PurR) (PDB:1BDH) VTP50341.1
Alteromonas macleodii MIT1002 3952 nan VTP50340.1
Alteromonas macleodii MIT1002 3953 0.001442615 0.004941764 3.57828E-4 0.0058147 K02014 nan Outer membrane cobalamin receptor protein BtuB (BtuB) (PDB:1NQE) VTP50339.1
Alteromonas macleodii MIT1002 3954 nan VTP54123.1
Alteromonas macleodii MIT1002 3955 nan VTP55237.1
Alteromonas macleodii MIT1002 3956 nan
Alteromonas macleodii MIT1002 3957 1.78882E-4 1.13834E-4 1.86607E-4 1.47578E-4 nan V8-like Glu-specific endopeptidase (eMpr) VTP53133.1
Alteromonas macleodii MIT1002 3958 0.009855872 0.012729361 0.01897968 0.026546458 K00813 nan Aspartate/aromatic aminotransferase (TyrB) (PDB:1AAM) VTP53131.1
Alteromonas macleodii MIT1002 3959 1.35287E-5 8.45544E-6 3.38218E-6 nan Uncharacterized stress-responsive protein, TANGO2 (Transport and Golgi organisation 2) family, contains NRDE motif (Tango2) (PUBMED:26631869) VTP53129.1
Alteromonas macleodii MIT1002 3960 4.16762E-6 4.16762E-6 1.66705E-5 nan 1-acyl-sn-glycerol-3-phosphate acyltransferase (PlsC) (PDB:1IUQ) VTP53127.1
Alteromonas macleodii MIT1002 3961 0.0010639 4.07391E-4 6.99803E-4 2.15051E-4 K01740 nan O-acetylhomoserine/O-acetylserine sulfhydrylase, pyridoxal phosphate-dependent (MET17) (PDB:2CTZ) VTP53125.1
Alteromonas macleodii MIT1002 3962 1.71375E-5 nan Putative cell wall-binding domain (amidase enhancer), LytB superfamily (LytB) (PDB:5J6Q)!!!Plastocyanin (PetE) (PDB:3BQV) VTP53123.1
Alteromonas macleodii MIT1002 3963 6.75647E-4 9.98082E-4 0.001363019 2.48422E-4 K01118 nan FMN-dependent NADH-azoreductase (AzoR) (PDB:1TIK) VTP53121.1
Alteromonas macleodii MIT1002 3964 2.46924E-4 7.96527E-5 K00432 nan Thioredoxin/glutathione peroxidase BtuE, reduces lipid peroxides (BtuE) (PDB:2P5Q) (PUBMED:22931285) VTP53119.1
Alteromonas macleodii MIT1002 3965 9.65787E-4 2.8254E-4 3.49207E-4 0.001259792 nan Dipeptidyl aminopeptidase/acylaminoacyl peptidase (DAP2) (PDB:2JBW) VTP53117.1
Alteromonas macleodii MIT1002 3966 nan Membrane-associated serine protease, rhomboid family (GlpG) (PDB:2IC8) VTP53115.1
Alteromonas macleodii MIT1002 3967 3.11587E-5 1.38483E-5 nan Enoyl-CoA hydratase/carnithine racemase (CaiD) (PDB:1DCI) VTP53113.1
Alteromonas macleodii MIT1002 3968 2.09445E-4 1.62846E-4 4.81523E-4 1.66103E-4 K00681 nan Gamma-glutamyltranspeptidase (Ggt) (PDB:2Z8I) (PUBMED:16618936) VTP53111.1
Alteromonas macleodii MIT1002 3969 8.359E-6 K06998 Pyocyanine biosynthesis, chorismate => pyocyanine Predicted epimerase YddE/YHI9, PhzF superfamily (YHI9) (PDB:1SDJ) (PUBMED:24914732) VTP53109.1
Alteromonas macleodii MIT1002 3970 nan Membrane-associated phospholipid phosphatase (PgpB) (PDB:1D2T) VTP53107.1
Alteromonas macleodii MIT1002 3971 nan Predicted DNA-binding protein with double-wing structural motif, MmcQ/YjbR family (MmcQ) (PDB:2A1V) (PUBMED:17266124) VTP53105.1
Alteromonas macleodii MIT1002 3972 6.08952E-5 1.23855E-5 2.37388E-4 2.78673E-5 K01068 nan Dienelactone hydrolase (DLH) (PDB:4ZV9) VTP53103.1
Alteromonas macleodii MIT1002 3973 nan VTP53101.1
Alteromonas macleodii MIT1002 3974 nan VTP53099.1
Alteromonas macleodii MIT1002 3975 nan
Alteromonas macleodii MIT1002 3976 nan VTP53097.1
Alteromonas macleodii MIT1002 3977 nan VTP53095.1
Alteromonas macleodii MIT1002 3978 nan Predicted thiol-disulfide oxidoreductase YuxK, DCC family (YuxK) (PUBMED:15236740) VTP53093.1
Alteromonas macleodii MIT1002 3979 6.82268E-5 nan VTP53091.1
Alteromonas macleodii MIT1002 3980 nan VTP53089.1
Alteromonas macleodii MIT1002 3981 nan VTP53085.1
Alteromonas macleodii MIT1002 3982 nan Plasmid stabilization system protein ParE (ParE) (PDB:3KXE) VTP53083.1
Alteromonas macleodii MIT1002 3983 nan VTP53081.1
Alteromonas macleodii MIT1002 3984 nan Endonuclease YncB, thermonuclease family (YncB) VTP53079.1
Alteromonas macleodii MIT1002 3985 nan VTP53077.1
Alteromonas macleodii MIT1002 3986 nan VTP53075.1
Alteromonas macleodii MIT1002 3987 2.26059E-5 9.04234E-6 1.80847E-5 1.9215E-5 K07089 nan Uncharacterized membrane protein YraQ, UPF0718 family (YraQ) VTP55923.1
Alteromonas macleodii MIT1002 3988 1.90035E-4 1.09856E-4 2.23877E-5 1.16364E-4 K06200 nan Carbon starvation protein CstA (peptide/pyruvate transporter) (CstA) (PUBMED:26497384;29358499) VTP55925.1
Alteromonas macleodii MIT1002 3989 nan Flavoprotein (flavin reductase) subunit CysJ of sulfite and N-hydroxylaminopurine reductases (CysJ) (PDB:1YKG) (PUBMED:20118259) VTP55927.1
Alteromonas macleodii MIT1002 3990 7.84129E-4 1.44974E-4 0.001657147 0.018901637 nan Uncharacterized protein, contains GH25 family domain VTP55929.1
Alteromonas macleodii MIT1002 3991 2.98119E-4 6.82842E-5 5.12964E-4 0.004042092 nan Predicted periplasmic protein VTP55931.1
Alteromonas macleodii MIT1002 3992 K09939 nan Uncharacterized conserved protein VTP55933.1
Alteromonas macleodii MIT1002 3993 nan VTP55935.1
Alteromonas macleodii MIT1002 3994 nan PepSY-associated TM region (PiuB) (PUBMED:15124630) VTP55937.1
Alteromonas macleodii MIT1002 3995 nan VTP55939.1
Alteromonas macleodii MIT1002 3996 1.7318E-5 2.18078E-5 0.001351763 nan Cytochrome c-type biogenesis protein CcmH/NrfG (NrfG) VTP55941.1
Alteromonas macleodii MIT1002 3997 K03832 nan VTP55943.1
Alteromonas macleodii MIT1002 3998 K03559 nan Biopolymer transport protein ExbD (ExbD) (PDB:2JWK) VTP55945.1
Alteromonas macleodii MIT1002 3999 K03561 nan Biopolymer transport protein ExbB/TolQ (TolQ) (PDB:5SV0) VTP55946.1
Alteromonas macleodii MIT1002 4000 8.06406E-5 2.17602E-5 0.001464012 K03561 nan Biopolymer transport protein ExbB/TolQ (TolQ) (PDB:5SV0) VTP55948.1
Alteromonas macleodii MIT1002 4001 6.13512E-5 3.06756E-5 7.80524E-4 nan VTP55950.1
Alteromonas macleodii MIT1002 4002 0.006293489 3.45754E-6 0.00334805 0.05240822 K19611 nan Outer membrane receptor for ferrienterochelin and colicins (FepA) (PDB:2HDF) (PUBMED:16468998) VTP55952.1
Alteromonas macleodii MIT1002 4003 1.79488E-4 nan FMN-dependent dehydrogenase, includes L-lactate dehydrogenase and type II isopentenyl diphosphate isomerase (LldD) (PDB:6AI7) VTP55954.1
Alteromonas macleodii MIT1002 4004 3.89101E-6 9.72751E-6 1.1673E-5 4.86376E-5 K07336 nan Predicted 2-oxoglutarate- and Fe(II)-dependent dioxygenase YbiX (PiuC) (PDB:3DKQ) VTP55956.1
Alteromonas macleodii MIT1002 4005 0.007253289 0.004583767 0.36655957 K16090 nan Outer membrane receptor for monomeric catechols (Fiu) VTP55958.1
Alteromonas macleodii MIT1002 4006 K14731 nan Acetyl esterase/lipase (Aes) (PDB:1EVQ) VTP55960.1
Alteromonas macleodii MIT1002 4007 2.11644E-4 9.83698E-5 5.50474E-4 2.04192E-4 K09973 nan Uncharacterized conserved protein YbaP, TraB family (TraB) VTP55962.1
Alteromonas macleodii MIT1002 4008 nan Translation elongation factor EF-Tu, a GTPase (TufA) (PDB:1EFU) VTP55964.1
Alteromonas macleodii MIT1002 4009 nan Transposase VTP54239.1
Alteromonas macleodii MIT1002 4010 nan
Alteromonas macleodii MIT1002 4011 1.54818E-5 nan VTP58101.1
Alteromonas macleodii MIT1002 4012 nan VTP58102.1
Alteromonas macleodii MIT1002 4013 K07486 nan Transposase VTP58103.1
Alteromonas macleodii MIT1002 4014 nan VTP58104.1
Alteromonas macleodii MIT1002 4015 K07486 nan Transposase VTP58105.1
Alteromonas macleodii MIT1002 4016 K07486 nan Transposase VTP58106.1
Alteromonas macleodii MIT1002 4017 0.00327991 1.91068E-4 7.22884E-4 0.001474684 nan Uncharacterized conserved protein RhaS, contains 28 RHS repeats (RhsA) (PDB:4IGL) VTP58107.1
Alteromonas macleodii MIT1002 4018 3.79335E-5 7.06942E-5 2.53465E-4 1.29319E-4 nan VTP58108.1
Alteromonas macleodii MIT1002 4019 9.00069E-7 nan Transposase and inactivated derivatives, TnpA family VTP58109.1
Alteromonas macleodii MIT1002 4020 2.84585E-6 nan Chromate resistance protein ChrB1 (ChrB1) VTP58110.1
Alteromonas macleodii MIT1002 4021 1.81313E-6 K07240 nan Chromate transport protein ChrA (ChrA) VTP58111.1
Alteromonas macleodii MIT1002 4022 0.001064753 0.002620631 0.003172905 0.004501662 nan LysM repeat (LysM) (PDB:1E0G) VTP58112.1
Alteromonas macleodii MIT1002 4023 nan Site-specific recombinase XerD (XerD) (PDB:1A0P) VTP58113.1
Alteromonas macleodii MIT1002 4024 2.01574E-5 2.51968E-6 2.51968E-6 nan Chromosome segregation ATPase Smc (Smc) (PDB:5XG3) VTP58114.1
Alteromonas macleodii MIT1002 4025 nan VTP54752.1
Alteromonas macleodii MIT1002 4026 5.57666E-4 0.002375758 0.001719896 0.001268487 K00290 Lysine biosynthesis, AAA pathway, 2-oxoglutarate => 2-aminoadipate => lysine Saccharopine dehydrogenase, NADP-dependent (Lys9) (PDB:1E5L) VTP54754.1
Alteromonas macleodii MIT1002 4027 4.43582E-4 8.934E-4 6.77456E-4 5.62468E-4 K13747 nan Diaminopimelate decarboxylase (LysA) (PDB:1D7K) VTP54756.1
Alteromonas macleodii MIT1002 4028 2.42544E-4 1.03455E-4 4.1382E-5 5.5176E-5 K12984 nan Glycosyltransferase involved in cell wall bisynthesis (WcaA) (PDB:5MLZ) VTP54758.1
Alteromonas macleodii MIT1002 4029 nan VTP54760.1
Alteromonas macleodii MIT1002 4030 3.16319E-6 5.27199E-5 1.58159E-5 K07056 nan 16S rRNA C1402 (ribose-2'-O) methylase RsmI (RsmI) (PDB:3KWP) (PUBMED:24078611) VTP54762.1
Alteromonas macleodii MIT1002 4031 4.9734E-4 2.35906E-4 3.77626E-4 1.7759E-4 K07121 nan Outer membrane lipoprotein LpoA, binds and activates PBP1a (LpoA) (PDB:2MHK) (PUBMED:21183074) VTP54764.1
Alteromonas macleodii MIT1002 4032 K07460 nan Predicted endonuclease distantly related to archaeal Holliday junction resolvase, YraN/UPF0102 family (YraN) (PDB:3FOV) VTP54766.1
Alteromonas macleodii MIT1002 4033 2.66401E-4 1.72472E-4 1.86238E-4 3.52233E-5 K12989 nan Glycosyltransferase involved in cell wall bisynthesis (RfaB) (PDB:2IV7) VTP54768.1
Alteromonas macleodii MIT1002 4034 1.85052E-4 3.49378E-4 1.90974E-4 1.59885E-4 K12961 ADP-L-glycero-D-manno-heptose biosynthesis Phosphoheptose isomerase (GmhA) (PDB:1G76) VTP54770.1
Alteromonas macleodii MIT1002 4035 4.4352E-4 5.75503E-5 8.59418E-5 4.60402E-5 K04065 nan Osmotically-inducible protein OsmY, contains BON domain (OsmY) (PUBMED:12878000) VTP54772.1
Alteromonas macleodii MIT1002 4036 nan Predicted arabinose efflux permease AraJ, MFS family (AraJ) (PDB:4LDS) VTP54774.1
Alteromonas macleodii MIT1002 4037 nan VTP54776.1
Alteromonas macleodii MIT1002 4038 K03297 nan Multidrug transporter EmrE and related cation transporters (EmrE) (PDB:2I68) VTP54778.1
Alteromonas macleodii MIT1002 4039 2.22062E-6 2.22062E-6 K07778 nan Signal transduction histidine kinase ComP (ComP) (PDB:4GT8) VTP54780.1
Alteromonas macleodii MIT1002 4040 K07693 nan DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains (CitB) (PDB:1A04) VTP54782.1
Alteromonas macleodii MIT1002 4041 7.99425E-6 5.06302E-5 1.59885E-5 7.99425E-6 nan VTP54784.1
Alteromonas macleodii MIT1002 4042 nan VTP54785.1
Alteromonas macleodii MIT1002 4043 0.004186108 8.93796E-4 0.001809234 0.002534446 K02014 nan Outer membrane receptor protein, Fe transport (CirA) (PDB:1BY3) VTP54786.1
Alteromonas macleodii MIT1002 4044 nan Transposase VTP53646.1
Alteromonas macleodii MIT1002 4045 nan Large exoprotein involved in heme utilization or adhesion (FhaB) (PDB:4RM6) VTP52040.1
Alteromonas macleodii MIT1002 4046 2.9022E-6 1.16088E-5 4.64352E-5 nan DNA-binding transcriptional regulator, LysR family (LysR) (PDB:2FYI) VTP52042.1
Alteromonas macleodii MIT1002 4047 K03752 nan Molybdopterin-guanine dinucleotide biosynthesis protein A (MobA) (PDB:1E5K) (PUBMED:32239579) VTP52044.1
Alteromonas macleodii MIT1002 4048 K02379 nan Formate dehydrogenase assembly factor FdhD, a sulfurtransferase (FdhD) (PDB:2PW9) VTP52046.1
Alteromonas macleodii MIT1002 4049 1.55271E-5 2.71157E-4 5.68067E-6 4.54453E-6 nan Anaerobic selenocysteine-containing dehydrogenase (BisC) (PDB:1EU1) VTP52048.1
Alteromonas macleodii MIT1002 4050 K07006 nan Predicted flavin-nucleotide-binding protein, pyridoxine 5'-phosphate oxidase superfamily (PDB:5ESC) VTP52050.1
Alteromonas macleodii MIT1002 4051 K00799 nan Glutathione S-transferase (GstA) (PDB:1A0F) VTP52052.1
Alteromonas macleodii MIT1002 4052 K09958 nan Uncharacterized conserved protein, nuclear transport factor 2 (NTF2) superfamily VTP52054.1
Alteromonas macleodii MIT1002 4053 nan DNA-binding transcriptional regulator, LysR family (LysR) (PDB:2FYI) VTP52056.1
Alteromonas macleodii MIT1002 4054 2.28407E-5 K02348 nan Predicted N-acyltransferase, GNAT family (ElaA) (PDB:1XEB) VTP52058.1
Alteromonas macleodii MIT1002 4055 3.1977E-6 3.62406E-5 1.17249E-5 1.27908E-5 K01560 nan FMN and 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB, HAD superfamily (riboflavin biosynthesis) (YigB) (PDB:4JB3) (PUBMED:24123841) VTP52060.1
Alteromonas macleodii MIT1002 4056 3.9083E-6 2.2147E-5 6.64411E-5 K02483 nan DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain (OmpR) (PDB:1XHF) VTP52062.1
Alteromonas macleodii MIT1002 4057 nan VTP55315.1
Alteromonas macleodii MIT1002 4058 nan VTP55317.1
Alteromonas macleodii MIT1002 4059 nan VTP55319.1
Alteromonas macleodii MIT1002 4060 nan VTP55321.1
Alteromonas macleodii MIT1002 4061 nan VTP55323.1
Alteromonas macleodii MIT1002 4062 nan VTP55325.1
Alteromonas macleodii MIT1002 4063 nan VTP55327.1
Alteromonas macleodii MIT1002 4064 5.22174E-4 0.001037942 3.65202E-4 0.001674642 nan VTP55329.1
Alteromonas macleodii MIT1002 4065 1.62291E-4 6.79125E-5 2.94621E-5 7.93979E-5 nan Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins (OmpA) (PDB:1OAP) VTP55331.1
Alteromonas macleodii MIT1002 4066 4.91572E-5 4.91572E-5 7.91978E-5 nan GTPase SAR1 family domain (Gem1) (PDB:4C0J) VTP55333.1
Alteromonas macleodii MIT1002 4067 2.32505E-5 3.18864E-4 2.25032E-4 2.81497E-4 K21023 nan GGDEF domain, diguanylate cyclase (c-di-GMP synthetase) or its enzymatically inactive variants (GGDEF) (PDB:6D9M)!!!EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant) (EAL) (PDB:2BAS) VTP55335.1
Alteromonas macleodii MIT1002 4068 nan VTP55337.1
Alteromonas macleodii MIT1002 4069 K09768 nan Uncharacterized conserved protein YaiI, UPF0178 family (YaiI) VTP53139.1
Alteromonas macleodii MIT1002 4070 3.12818E-5 5.79293E-5 1.96959E-5 3.12818E-5 nan NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family (FabG) (PDB:6L1H) VTP53141.1
Alteromonas macleodii MIT1002 4071 K00059 Fatty acid biosynthesis, elongation NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family (FabG) (PDB:6L1H) VTP53143.1
Alteromonas macleodii MIT1002 4072 6.83952E-6 1.46561E-6 nan Acyl-CoA dehydrogenase related to the alkylation response protein AidB (CaiA) (PDB:1BUC) VTP53145.1
Alteromonas macleodii MIT1002 4073 K07506 nan Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH domain (GlxA) VTP53147.1
Alteromonas macleodii MIT1002 4074 0.008302308 0.003849546 0.005199452 0.011339211 K02014 nan Outer membrane receptor protein, Fe transport (CirA) (PDB:1BY3) VTP53149.1
Alteromonas macleodii MIT1002 4075 nan VTP53151.1
Alteromonas macleodii MIT1002 4076 nan Transposase InsO and inactivated derivatives (Tra5) VTP56524.1
Alteromonas macleodii MIT1002 4077 nan Site-specific recombinase XerC (XerC) VTP53789.1
Alteromonas macleodii MIT1002 4078 2.7225E-6 3.36682E-4 6.80623E-5 1.089E-5 K07126 nan Ankyrin repeat (ANKYR) (PDB:6AUN)!!!TPR repeat (TPR) (PDB:1KLX) VTP53791.1
Alteromonas macleodii MIT1002 4079 nan VTP53793.1
Alteromonas macleodii MIT1002 4080 nan VTP53795.1
Alteromonas macleodii MIT1002 4081 7.1652E-6 7.8166E-6 1.43304E-5 nan Adenylate cyclase, class 3 (AcyC) (PDB:1AB8) VTP53797.1
Alteromonas macleodii MIT1002 4082 9.6616E-5 1.96507E-5 4.4214E-5 nan VTP53799.1
Alteromonas macleodii MIT1002 4083 nan Site-specific recombinase XerC (XerC) VTP53801.1
Alteromonas macleodii MIT1002 4084 nan Site-specific recombinase XerC (XerC) VTP53779.1
Alteromonas macleodii MIT1002 4085 nan VTP53781.1
Alteromonas macleodii MIT1002 4086 1.41834E-5 1.11575E-4 1.17249E-4 nan VTP53783.1
Alteromonas macleodii MIT1002 4087 6.47387E-5 1.34872E-5 nan VTP53785.1
Alteromonas macleodii MIT1002 4088 nan Predicted extracellular nuclease VTP53787.1
Alteromonas macleodii MIT1002 4089 nan Site-specific recombinase XerC (XerC) VTP53789.1
Alteromonas macleodii MIT1002 4090 nan Methionyl-tRNA formyltransferase (Fmt) (PDB:1FMT) VTP50317.1
Alteromonas macleodii MIT1002 4091 nan Ketosteroid isomerase homolog YybH (YybH) (PDB:2GXF) VTP50316.1
Alteromonas macleodii MIT1002 4092 nan Ketosteroid isomerase homolog YybH (YybH) (PDB:2GXF) VTP50315.1
Alteromonas macleodii MIT1002 4093 nan Putative copper export protein (PcoD) VTP50314.1
Alteromonas macleodii MIT1002 4094 nan VTP50547.1
Alteromonas macleodii MIT1002 4095 K07486 nan Transposase VTP54239.1
Alteromonas macleodii MIT1002 4096 K07482 nan Transposase VTP55145.1
Alteromonas macleodii MIT1002 4097 nan
Alteromonas macleodii MIT1002 4098 nan Transposase VTP55313.1
Alteromonas macleodii MIT1002 4099 nan VTP55311.1
Alteromonas macleodii MIT1002 4100 nan Transposase VTP58116.1
Alteromonas macleodii MIT1002 4101 K07484 nan Transposase VTP55640.1
Alteromonas macleodii MIT1002 4102 nan VTP55638.1
Alteromonas macleodii MIT1002 4103 K07495 nan IS4 transposase InsG (InsG) VTP54123.1
Alteromonas macleodii MIT1002 4104 nan Methionyl-tRNA formyltransferase (Fmt) (PDB:1FMT) VTP50234.1
Alteromonas macleodii MIT1002 4105 nan Uncharacterized metal-binding protein, DUF411 family VTP50233.1
Alteromonas macleodii MIT1002 4106 nan VTP55413.1

 
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