ERDDAP > tabledap > Make A Graph

Dataset Title:	[Kāneʻohe Bay Time-series - microbial community] - Flow cytometry, 16S rRNA gene amplicons, chlorophyll a, and surface seawater measurements taken between August 2017 to June 2019 Kāneʻohe Bay, Oʻahu, Hawaiʻi (Population genomics and ecotypic divergence in the most dominant lineage of marine bacteria)
Institution:	BCO-DMO   (Dataset ID: bcodmo_dataset_930084_v1)
Range:	longitude = -157.8358 to -157.7663°E, latitude = 21.43635 to 21.526°N, depth = 2.0 to 2.0m
Information:	Summary | License | FGDC | ISO 19115 | Metadata | Background | Data Access Form | Files

 

Graph Type:  lines linesAndMarkers markers sticks vectors X Axis:  depth latitude longitude chlorophyll_a_ug_per_L ph salinity Seawater_temperature Prochlorococcus_cells_per_mL Synechococcus_cells_per_mL Heterotrophic_bacteria_cells_per_mL Eukaryotic_picophytoplankton_cells_per_mL Y Axis:  depth latitude longitude chlorophyll_a_ug_per_L ph salinity Seawater_temperature Prochlorococcus_cells_per_mL Synechococcus_cells_per_mL Heterotrophic_bacteria_cells_per_mL Eukaryotic_picophytoplankton_cells_per_mL Color:  depth latitude longitude chlorophyll_a_ug_per_L ph salinity Seawater_temperature Prochlorococcus_cells_per_mL Synechococcus_cells_per_mL Heterotrophic_bacteria_cells_per_mL Eukaryotic_picophytoplankton_cells_per_mL   Constraints Optional Constraint #1 Optional Constraint #2 Sample_ID collection_date depth env_broad_scale env_local_scale env_medium geo_loc_name latitude longitude Site_name chlorophyll_a_ug_per_L ph salinity Seawater_temperature Prochlorococcus_cells_per_mL Synechococcus_cells_per_mL Heterotrophic_bacteria_cells_per_mL Eukaryotic_picophytoplankton_cells_per_mL Universal_Sample_ID SRA_accession study bioproject_accession biosample_accession library_ID library_strategy library_source library_selection library_layout platform instrument_model design_description filetype filename filename2     != =~ <= >= = < >     != =~ <= >= = < > Sample_ID collection_date depth env_broad_scale env_local_scale env_medium geo_loc_name latitude longitude Site_name chlorophyll_a_ug_per_L ph salinity Seawater_temperature Prochlorococcus_cells_per_mL Synechococcus_cells_per_mL Heterotrophic_bacteria_cells_per_mL Eukaryotic_picophytoplankton_cells_per_mL Universal_Sample_ID SRA_accession study bioproject_accession biosample_accession library_ID library_strategy library_source library_selection library_layout platform instrument_model design_description filetype filename filename2     != =~ <= >= = < >     != =~ <= >= = < > Sample_ID collection_date depth env_broad_scale env_local_scale env_medium geo_loc_name latitude longitude Site_name chlorophyll_a_ug_per_L ph salinity Seawater_temperature Prochlorococcus_cells_per_mL Synechococcus_cells_per_mL Heterotrophic_bacteria_cells_per_mL Eukaryotic_picophytoplankton_cells_per_mL Universal_Sample_ID SRA_accession study bioproject_accession biosample_accession library_ID library_strategy library_source library_selection library_layout platform instrument_model design_description filetype filename filename2     != =~ <= >= = < >     != =~ <= >= = < > Sample_ID collection_date depth env_broad_scale env_local_scale env_medium geo_loc_name latitude longitude Site_name chlorophyll_a_ug_per_L ph salinity Seawater_temperature Prochlorococcus_cells_per_mL Synechococcus_cells_per_mL Heterotrophic_bacteria_cells_per_mL Eukaryotic_picophytoplankton_cells_per_mL Universal_Sample_ID SRA_accession study bioproject_accession biosample_accession library_ID library_strategy library_source library_selection library_layout platform instrument_model design_description filetype filename filename2     != =~ <= >= = < >     != =~ <= >= = < > Sample_ID collection_date depth env_broad_scale env_local_scale env_medium geo_loc_name latitude longitude Site_name chlorophyll_a_ug_per_L ph salinity Seawater_temperature Prochlorococcus_cells_per_mL Synechococcus_cells_per_mL Heterotrophic_bacteria_cells_per_mL Eukaryotic_picophytoplankton_cells_per_mL Universal_Sample_ID SRA_accession study bioproject_accession biosample_accession library_ID library_strategy library_source library_selection library_layout platform instrument_model design_description filetype filename filename2     != =~ <= >= = < >     != =~ <= >= = < >   Server-side Functions  distinct() orderBy orderByDescending orderByClosest orderByCount orderByLimit orderByMax orderByMin orderByMinMax orderByMean orderBySum (" Sample_ID collection_date depth env_broad_scale env_local_scale env_medium geo_loc_name latitude longitude Site_name chlorophyll_a_ug_per_L ph salinity Seawater_temperature Prochlorococcus_cells_per_mL Synechococcus_cells_per_mL Heterotrophic_bacteria_cells_per_mL Eukaryotic_picophytoplankton_cells_per_mL Universal_Sample_ID SRA_accession study bioproject_accession biosample_accession library_ID library_strategy library_source library_selection library_layout platform instrument_model design_description filetype filename filename2 Sample_ID collection_date depth env_broad_scale env_local_scale env_medium geo_loc_name latitude longitude Site_name chlorophyll_a_ug_per_L ph salinity Seawater_temperature Prochlorococcus_cells_per_mL Synechococcus_cells_per_mL Heterotrophic_bacteria_cells_per_mL Eukaryotic_picophytoplankton_cells_per_mL Universal_Sample_ID SRA_accession study bioproject_accession biosample_accession library_ID library_strategy library_source library_selection library_layout platform instrument_model design_description filetype filename filename2 Sample_ID collection_date depth env_broad_scale env_local_scale env_medium geo_loc_name latitude longitude Site_name chlorophyll_a_ug_per_L ph salinity Seawater_temperature Prochlorococcus_cells_per_mL Synechococcus_cells_per_mL Heterotrophic_bacteria_cells_per_mL Eukaryotic_picophytoplankton_cells_per_mL Universal_Sample_ID SRA_accession study bioproject_accession biosample_accession library_ID library_strategy library_source library_selection library_layout platform instrument_model design_description filetype filename filename2 Sample_ID collection_date depth env_broad_scale env_local_scale env_medium geo_loc_name latitude longitude Site_name chlorophyll_a_ug_per_L ph salinity Seawater_temperature Prochlorococcus_cells_per_mL Synechococcus_cells_per_mL Heterotrophic_bacteria_cells_per_mL Eukaryotic_picophytoplankton_cells_per_mL Universal_Sample_ID SRA_accession study bioproject_accession biosample_accession library_ID library_strategy library_source library_selection library_layout platform instrument_model design_description filetype filename filename2 ")   Graph Settings Marker Type:  None Plus X Dot Square Filled Square Circle Filled Circle Up Triangle Filled Up Triangle Borderless Filled Square Borderless Filled Circle Borderless Filled Up Triangle  Size:  3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 Color:  Color Bar:  BlackBlueWhite BlackGreenWhite BlackRedWhite BlackWhite BlueWhiteRed BlueWideWhiteRed LightRainbow Ocean OceanDepth Rainbow Rainbow2 Rainfall ReverseRainbow RedWhiteBlue RedWhiteBlue2 RedWideWhiteBlue Spectrum Topography TopographyDepth WhiteBlueBlack WhiteGreenBlack WhiteRedBlack WhiteBlack YellowRed KT_algae KT_amp KT_balance KT_curl KT_deep KT_delta KT_dense KT_gray KT_haline KT_ice KT_matter KT_oxy KT_phase KT_solar KT_speed KT_tempo KT_thermal KT_turbid  Continuity:  Continuous Discrete  Scale:  Linear Log    Minimum:   Maximum:   N Sections:  2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 Draw land mask:  under over outline off Y Axis Minimum:   Maximum:    Ascending Descending Linear Log   Redraw the Graph (Please be patient. It may take a while to get the data.)   Optional: Then set the File Type: .asc .csv .csvp .csv0 .dataTable .das .dds .dods .esriCsv .fgdc .geoJson .graph .help .html .htmlTable .iso19115 .itx .json .jsonlCSV1 .jsonlCSV .jsonlKVP .mat .nc .ncHeader .ncCF .ncCFHeader .ncCFMA .ncCFMAHeader .nccsv .nccsvMetadata .ncoJson .odvTxt .subset .tsv .tsvp .tsv0 .wav .xhtml .kml .smallPdf .pdf .largePdf .smallPng .png .largePng .transparentPng (File Type information) and or view the URL: (Documentation / Bypass this form )

Click on the map to specify a new center point. Zoom:

 

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Things You Can Do With Your Graphs

Well, you can do anything you want with your graphs, of course. But some things you might not have considered are:

• Web page authors can embed a graph of the latest data in a web page using HTML <img> tags.
• Anyone can use ERDDAPs Slide Sorter to build a personal web page that displays graphs with the latest data (or other images or HTML content), each in its own, draggable slide.
   

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The Dataset Attribute Structure (.das) for this Dataset

Attributes {
 s {
  Sample_ID {
    String long_name "Sample_id";
    String units "unitless";
  }
  collection_date {
    String long_name "Collection_date";
    String units "unitless";
  }
  depth {
    String _CoordinateAxisType "Height";
    String _CoordinateZisPositive "down";
    Int32 actual_range 2, 2;
    String axis "Z";
    String ioos_category "Location";
    String long_name "Depth";
    String positive "down";
    String standard_name "depth";
    String units "m";
  }
  env_broad_scale {
    String long_name "Env_broad_scale";
    String units "unitless";
  }
  env_local_scale {
    String long_name "Env_local_scale";
    String units "unitless";
  }
  env_medium {
    String long_name "Env_medium";
    String units "unitless";
  }
  geo_loc_name {
    String long_name "Geo_loc_name";
    String units "unitless";
  }
  latitude {
    String _CoordinateAxisType "Lat";
    Float32 actual_range 21.43635, 21.526;
    String axis "Y";
    String ioos_category "Location";
    String long_name "Latitude";
    String standard_name "latitude";
    String units "degrees_north";
  }
  longitude {
    String _CoordinateAxisType "Lon";
    Float32 actual_range -157.8358, -157.7663;
    String axis "X";
    String ioos_category "Location";
    String long_name "Longitude";
    String standard_name "longitude";
    String units "degrees_east";
  }
  Site_name {
    String long_name "Site_name";
    String units "unitless";
  }
  chlorophyll_a_ug_per_L {
    Float32 actual_range 0.22, 2.74;
    String long_name "Chlorophyll_a_ug_per_l";
    String units "micrograms per Liter";
  }
  ph {
    Float32 actual_range 7.45, 8.64;
    String long_name "Ph";
    String units "no unit";
  }
  salinity {
    Float32 actual_range 31.81, 36.97;
    String long_name "Salinity";
    String units "ppt";
  }
  Seawater_temperature {
    Float32 actual_range 23.07, 28.99;
    String long_name "Seawater_temperature";
    String units "degrees Celsius  (°C)";
  }
  Prochlorococcus_cells_per_mL {
    Int32 actual_range 0, 113833;
    String long_name "Prochlorococcus_cells_per_ml";
    String units "cells per mL";
  }
  Synechococcus_cells_per_mL {
    Int32 actual_range 2074, 517913;
    String long_name "Synechococcus_cells_per_ml";
    String units "cells per mL";
  }
  Heterotrophic_bacteria_cells_per_mL {
    Int32 actual_range 348075, 2667000;
    String long_name "Heterotrophic_bacteria_cells_per_ml";
    String units "cells per mL";
  }
  Eukaryotic_picophytoplankton_cells_per_mL {
    Int32 actual_range 1549, 117338;
    String long_name "Eukaryotic_picophytoplankton_cells_per_ml";
    String units "cells per mL";
  }
  Universal_Sample_ID {
    String long_name "Universal_sample_id";
    String units "unitless";
  }
  SRA_accession {
    String long_name "Sra_accession";
    String units "unitless";
  }
  study {
    String long_name "Study";
    String units "unitless";
  }
  bioproject_accession {
    String long_name "Bioproject_accession";
    String units "unitless";
  }
  biosample_accession {
    String long_name "Biosample_accession";
    String units "unitless";
  }
  library_ID {
    String long_name "Library_id";
    String units "unitless";
  }
  library_strategy {
    String long_name "Library_strategy";
    String units "unitless";
  }
  library_source {
    String long_name "Library_source";
    String units "unitless";
  }
  library_selection {
    String long_name "Library_selection";
    String units "unitless";
  }
  library_layout {
    String long_name "Library_layout";
    String units "unitless";
  }
  platform {
    String long_name "Platform";
    String units "unitless";
  }
  instrument_model {
    String long_name "Instrument_model";
    String units "unitless";
  }
  design_description {
    String long_name "Design_description";
    String units "unitless";
  }
  filetype {
    String long_name "Filetype";
    String units "unitless";
  }
  filename {
    String long_name "Filename";
    String units "unitless";
  }
  filename2 {
    String long_name "Filename2";
    String units "unitless";
  }
 }
  NC_GLOBAL {
    String cdm_data_type "Other";
    String Conventions "COARDS, CF-1.6, ACDD-1.3";
    String creator_email "info@bco-dmo.org";
    String creator_name "BCO-DMO";
    String creator_url "https://www.bco-dmo.org/";
    String doi "10.26008/1912/bco-dmo.930084.1";
    Float64 Easternmost_Easting -157.7663;
    Float64 geospatial_lat_max 21.526;
    Float64 geospatial_lat_min 21.43635;
    String geospatial_lat_units "degrees_north";
    Float64 geospatial_lon_max -157.7663;
    Float64 geospatial_lon_min -157.8358;
    String geospatial_lon_units "degrees_east";
    Float64 geospatial_vertical_max 2.0;
    Float64 geospatial_vertical_min 2.0;
    String geospatial_vertical_positive "down";
    String geospatial_vertical_units "m";
    String history 
"2024-11-08T05:41:36Z (local files)
2024-11-08T05:41:36Z https://erddap.bco-dmo.org/tabledap/bcodmo_dataset_930084_v1.das";
    String infoUrl "https://www.bco-dmo.org/dataset/930084";
    String institution "BCO-DMO";
    String license 
"The data may be used and redistributed for free but is not intended
for legal use, since it may contain inaccuracies. Neither the data
Contributor, ERD, NOAA, nor the United States Government, nor any
of their employees or contractors, makes any warranty, express or
implied, including warranties of merchantability and fitness for a
particular purpose, or assumes any legal liability for the accuracy,
completeness, or usefulness, of this information.";
    Float64 Northernmost_Northing 21.526;
    String sourceUrl "(local files)";
    Float64 Southernmost_Northing 21.43635;
    String summary 
"These data include temperature, pH, salinity, chlorophyll a concentrations, cellular abundances of Prochlorococcus, Synechococcus, photosynthetic picoeukaryotes, and heterotrophic bacteria, and 16S ribosomal RNA gene amplicon libraries from 200 surface seawater samples collected as part of the Kāneʻohe Bay Time-series (KByT). Near-monthly sampling of surface seawater was conducted between August 2017 to June 2019 at 10 sites within coastal waters of Kāneʻohe Bay, Oʻahu, Hawaiʻi and in the adjacent offshore. Instruments used were a YSI 6,600 sonde, a Turner 10AU fluorometer, an EPICS ALTRA flow cytometer, and an Illumina MiSeq v2 platform.

These data characterize the partitioning of microbial communities across sharp physiochemical gradients in surface seawaters connecting nearshore and offshore waters in the tropical Pacific. This study provides evidence for the ecological differentiation of SAR11 marine bacteria across nearshore to offshore waters in the tropical Pacific and further increases our understanding of how SAR11 genetic diversity partitions into distinct ecological units. Data were collected by Sarah J. Tucker, Kelle C. Freel, Elizabeth A. Monaghan, Clarisse E. S. Sullivan, Oscar Ramfelt, Yoshimi M. Rii, and Michael S. Rappé.";
    String title "[Kāneʻohe Bay Time-series - microbial community] - Flow cytometry, 16S rRNA gene amplicons, chlorophyll a, and surface seawater measurements  taken between August 2017 to June 2019 Kāneʻohe Bay, Oʻahu, Hawaiʻi (Population genomics and ecotypic divergence in the most dominant lineage of marine bacteria)";
    Float64 Westernmost_Easting -157.8358;
  }
}

 

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Using tabledap to Request Data and Graphs from Tabular Datasets

tabledap lets you request a data subset, a graph, or a map from a tabular dataset (for example, buoy data), via a specially formed URL. tabledap uses the OPeNDAP Data Access Protocol (DAP) and its selection constraints.

The URL specifies what you want: the dataset, a description of the graph or the subset of the data, and the file type for the response.

• (easy) You can get data by using the dataset's Data Access Form or Subset form. They make the URL for you.
• (easy) You can make a graph or map by using the dataset's Make A Graph form. It makes the URL for you.
• (not hard) You can bypass the forms and get the data or make a graph or map by generating the URL by hand or with a computer program or script.

Tabledap request URLs must be in the form
https://coastwatch.pfeg.noaa.gov/erddap/tabledap/datasetID.fileType{?query}
For example,
https://coastwatch.pfeg.noaa.gov/erddap/tabledap/pmelTaoDySst.htmlTable?longitude,latitude,time,station,wmo_platform_code,T_25&time>=2015-05-23T12:00:00Z&time<=2015-05-31T12:00:00Z
Thus, the query is often a comma-separated list of desired variable names, followed by a collection of constraints (e.g., variable<value), each preceded by '&' (which is interpreted as "AND").

For details, see the tabledap Documentation.

 

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