ERDDAP > tabledap > Data Access Form

Dataset Title:	[Pocillopora damicornis skeletal micromorphological analysis: Spine structures] - Micromorphological analyses of Pocillopora damicornis spine structures collected from reef of Heron Island, southern Great Barrier Reef from Jan 2021 to Feb 2021 (Influence of environmental pH variability and thermal sensitivity on the resilience of reef-building corals to acidification stress)
Institution:	BCO-DMO   (Dataset ID: bcodmo_dataset_942948_v1)
Information:	Summary | License | Metadata | Background | Files | Make a graph

 

Variable	Optional Constraint #1		Optional Constraint #2		Minimum	Maximum
Origin (unitless)	!= =~ <= >= = < >		!= =~ <= >= = < >		"Reef flat"	"Reef slope"
Treatment (unitless)	!= =~ <= >= = < >		!= =~ <= >= = < >		"Stable"	"Variable"
Colony_ID (unitless)	!= =~ <= >= = < >		!= =~ <= >= = < >		"11"	"9"
Feature_of_interest (unitless)	!= =~ <= >= = < >		!= =~ <= >= = < >		"SBC"	"SC"
Image_magnification (unitless)	!= =~ <= >= = < >		!= =~ <= >= = < >		"121x"	"245x"
Image_name (unitless)	!= =~ <= >= = < >		!= =~ <= >= = < >		"RF15A_002_SBC"	"RS9D_027_SC"
Observer (unitless)	!= =~ <= >= = < >		!= =~ <= >= = < >		"Julia"	"Julia"
Replicate (unitless)	!= =~ <= >= = < >		!= =~ <= >= = < >		"1"	"9"
Spine_length_mm (mm)	!= =~ <= >= = < >		!= =~ <= >= = < >		0.028	0.254
Spine_width_mm (mm)	!= =~ <= >= = < >		!= =~ <= >= = < >		0.023	0.162
Spine_length_um (micrometers (um))	!= =~ <= >= = < >		!= =~ <= >= = < >		11.165	303.723
Spine_width_um (micrometers (um))	!= =~ <= >= = < >		!= =~ <= >= = < >		12.494	163.742
Num_spines_within_calyx (unitless)	!= =~ <= >= = < >		!= =~ <= >= = < >		"0"	"9"
Spine_location (unitless)	!= =~ <= >= = < >		!= =~ <= >= = < >		"spines_between_calyx"	"spines_in_calyx"

 

Server-side Functions

distinct()

orderBy orderByDescending orderByClosest orderByCount orderByLimit orderByMax orderByMin orderByMinMax orderByMean orderBySum (" Origin Treatment Colony_ID Feature_of_interest Image_magnification Image_name Observer Replicate Spine_length_mm Spine_width_mm Spine_length_um Spine_width_um Num_spines_within_calyx Spine_location Origin Treatment Colony_ID Feature_of_interest Image_magnification Image_name Observer Replicate Spine_length_mm Spine_width_mm Spine_length_um Spine_width_um Num_spines_within_calyx Spine_location Origin Treatment Colony_ID Feature_of_interest Image_magnification Image_name Observer Replicate Spine_length_mm Spine_width_mm Spine_length_um Spine_width_um Num_spines_within_calyx Spine_location Origin Treatment Colony_ID Feature_of_interest Image_magnification Image_name Observer Replicate Spine_length_mm Spine_width_mm Spine_length_um Spine_width_um Num_spines_within_calyx Spine_location Origin Treatment Colony_ID Feature_of_interest Image_magnification Image_name Observer Replicate Spine_length_mm Spine_width_mm Spine_length_um Spine_width_um Num_spines_within_calyx Spine_location ")

File type: (more information) .asc - View OPeNDAP-style ISO-8859-1 comma-separated text. .csv - Download a ISO-8859-1 comma-separated text table (line 1: names; line 2: units; ISO 8601 times). .csvp - Download a ISO-8859-1 .csv file with line 1: name (units). Times are ISO 8601 strings. .csv0 - Download a ISO-8859-1 .csv file without column names or units. Times are ISO 8601 strings. .dataTable - A JSON file formatted for use with the Google Visualization client library (Google Charts). .das - View the dataset's metadata via an ISO-8859-1 OPeNDAP Dataset Attribute Structure (DAS). .dds - View the dataset's structure via an ISO-8859-1 OPeNDAP Dataset Descriptor Structure (DDS). .dods - OPeNDAP clients use this to download the data in the DODS binary format. .esriCsv - Download a ISO_8859_1 .csv file for ESRI's ArcGIS 9.x and below (separate date and time columns). .fgdc - View the dataset's UTF-8 FGDC .xml metadata. .geoJson - Download longitude,latitude,otherColumns data as a UTF-8 GeoJSON .json file. .graph - View a Make A Graph web page. .help - View a web page with a description of tabledap. .html - View an OPeNDAP-style HTML Data Access Form. .htmlTable - View a UTF-8 .html web page with the data in a table. Times are ISO 8601 strings. .iso19115 - View the dataset's ISO 19115-2/19139 UTF-8 .xml metadata. .itx - Download an ISO-8859-1 Igor Text File. Each response column becomes a wave. .json - View a table-like UTF-8 JSON file (missing value = 'null'; times are ISO 8601 strings). .jsonlCSV1 - View a UTF-8 JSON Lines CSV file with column names on line 1 (mv = 'null'; times are ISO 8601 strings). .jsonlCSV - View a UTF-8 JSON Lines CSV file without column names (mv = 'null'; times are ISO 8601 strings). .jsonlKVP - View a UTF-8 JSON Lines file with Key:Value pairs (missing value = 'null'; times are ISO 8601 strings). .mat - Download a MATLAB binary file. .nc - Download a flat, table-like, NetCDF-3 binary file with COARDS/CF/ACDD metadata. .ncHeader - View the UTF-8 header (the metadata) for the NetCDF-3 .nc file. .ncCF - Download a NetCDF-3 CF Discrete Sampling Geometries file (Contiguous Ragged Array). .ncCFHeader - View the UTF-8 header (the metadata) for the .ncCF file. .ncCFMA - Download a NetCDF-3 CF Discrete Sampling Geometries file (Multidimensional Array). .ncCFMAHeader - View the UTF-8 header (the metadata) for the .ncCFMA file. .nccsv - Download a NetCDF-3-like 7-bit ASCII NCCSV .csv file with COARDS/CF/ACDD metadata. .nccsvMetadata - View the dataset's metadata as the top half of a 7-bit ASCII NCCSV .csv file. .ncoJson - Download a UTF-8 NCO lvl=2 JSON file with COARDS/CF/ACDD metadata. .odvTxt - Download longitude,latitude,time,otherColumns as an ISO-8859-1 ODV Generic Spreadsheet File (.txt). .subset - View an HTML form which uses faceted search to simplify picking subsets of the data. .tsv - Download a ISO-8859-1 tab-separated text table (line 1: names; line 2: units; ISO 8601 times). .tsvp - Download a ISO-8859-1 .tsv file with line 1: name (units). Times are ISO 8601 strings. .tsv0 - Download a ISO-8859-1 .tsv file without column names or units. Times are ISO 8601 strings. .wav - Download a .wav audio file. All columns must be numeric and of the same type. .xhtml - View a UTF-8 XHTML (XML) file with the data in a table. Times are ISO 8601 strings. .kml - View a .kml file, suitable for Google Earth. .smallPdf - View a small .pdf image file with a graph or map. .pdf - View a standard, medium-sized .pdf image file with a graph or map. .largePdf - View a large .pdf image file with a graph or map. .smallPng - View a small .png image file with a graph or map. .png - View a standard, medium-sized .png image file with a graph or map. .largePng - View a large .png image file with a graph or map. .transparentPng - View a .png image file (just the data, without axes, landmask, or legend).

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The Dataset Attribute Structure (.das) for this Dataset

Attributes {
 s {
  Origin {
    String long_name "Origin";
    String units "unitless";
  }
  Treatment {
    String long_name "Treatment";
    String units "unitless";
  }
  Colony_ID {
    String long_name "Colony_id";
    String units "unitless";
  }
  Feature_of_interest {
    String long_name "Feature_of_interest";
    String units "unitless";
  }
  Image_magnification {
    String long_name "Image_magnification";
    String units "unitless";
  }
  Image_name {
    String long_name "Image_name";
    String units "unitless";
  }
  Observer {
    String long_name "Observer";
    String units "unitless";
  }
  Replicate {
    String long_name "Replicate";
    String units "unitless";
  }
  Spine_length_mm {
    Float32 actual_range 0.028, 0.254;
    String long_name "Spine_length_mm";
    String units "mm";
  }
  Spine_width_mm {
    Float32 actual_range 0.023, 0.162;
    String long_name "Spine_width_mm";
    String units "mm";
  }
  Spine_length_um {
    Float32 actual_range 11.165, 303.723;
    String long_name "Spine_length_um";
    String units "micrometers (um)";
  }
  Spine_width_um {
    Float32 actual_range 12.494, 163.742;
    String long_name "Spine_width_um";
    String units "micrometers (um)";
  }
  Num_spines_within_calyx {
    String long_name "Num_spines_within_calyx";
    String units "unitless";
  }
  Spine_location {
    String long_name "Spine_location";
    String units "unitless";
  }
 }
  NC_GLOBAL {
    String cdm_data_type "Other";
    String Conventions "COARDS, CF-1.6, ACDD-1.3";
    String creator_email "info@bco-dmo.org";
    String creator_name "BCO-DMO";
    String creator_url "https://www.bco-dmo.org/";
    String doi "10.26008/1912/bco-dmo.942948.1";
    String history 
"2025-08-25T19:05:17Z (local files)
2025-08-25T19:05:17Z https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_942948_v1.html";
    String infoUrl "https://osprey.bco-dmo.org/dataset/942948";
    String institution "BCO-DMO";
    String license 
"The data may be used and redistributed for free but is not intended
for legal use, since it may contain inaccuracies. Neither the data
Contributor, ERD, NOAA, nor the United States Government, nor any
of their employees or contractors, makes any warranty, express or
implied, including warranties of merchantability and fitness for a
particular purpose, or assumes any legal liability for the accuracy,
completeness, or usefulness, of this information.";
    String sourceUrl "(local files)";
    String summary 
"Corals residing in habitats that experience frequent seawater pCO2 variability may possess an enhanced capacity to cope with ocean acidification. Yet, we lack a clear understanding of the molecular toolkit enabling acclimatization to environmental extremes, and how life-long exposure to pCO2 variability influences biomineralization. We examined the gene expression responses and micro-skeletal characteristics of Pocillopora damicornis originating from the reef flat and reef slope of Heron Island, southern Great Barrier Reef. The reef flat (454 ± 3.0) and reef slope (418 ± 1.9) had similar mean seawater pCO2 (µatm; mean ± SE), but the reef flat experienced twice the mean daily pCO2 amplitude (range of 797v. 399 µatm day-1, respectively). A controlled mesocosm experiment was conducted over eight weeks, exposing P. damicornis from the reef slope and reef flat to stable (218±9) or variable (911±31) diel pCO2 fluctuations (µatm; mean ± SE).

This dataset includes the data and analyses for the spine structures micromorphological analyses of P. damicornis, including the origin reef environment, treatment, colony ID, feature of interest, image magnification, image name, observer, replicate, spine length, spine width, and number of spines.";
    String title "[Pocillopora damicornis skeletal micromorphological analysis: Spine structures] - Micromorphological analyses of Pocillopora damicornis spine structures collected from reef of Heron Island, southern Great Barrier Reef from Jan 2021 to Feb 2021 (Influence of environmental pH variability and thermal sensitivity on the resilience of reef-building corals to acidification stress)";
  }
}

 

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Using tabledap to Request Data and Graphs from Tabular Datasets

tabledap lets you request a data subset, a graph, or a map from a tabular dataset (for example, buoy data), via a specially formed URL. tabledap uses the OPeNDAP Data Access Protocol (DAP) and its selection constraints.

The URL specifies what you want: the dataset, a description of the graph or the subset of the data, and the file type for the response.

• (easy) You can get data by using the dataset's Data Access Form or Subset form. They make the URL for you.
• (easy) You can make a graph or map by using the dataset's Make A Graph form. It makes the URL for you.
• (not hard) You can bypass the forms and get the data or make a graph or map by generating the URL by hand or with a computer program or script.

Tabledap request URLs must be in the form
https://coastwatch.pfeg.noaa.gov/erddap/tabledap/datasetID.fileType{?query}
For example,
https://coastwatch.pfeg.noaa.gov/erddap/tabledap/pmelTaoDySst.htmlTable?longitude,latitude,time,station,wmo_platform_code,T_25&time>=2015-05-23T12:00:00Z&time<=2015-05-31T12:00:00Z
Thus, the query is often a comma-separated list of desired variable names, followed by a collection of constraints (e.g., variable<value), each preceded by '&' (which is interpreted as "AND").

For details, see the tabledap Documentation.

 

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