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In a joint collaborative research project among the University of Washington, Scripps Institution of Oceanography at UC San Diego, and California State University Monterey Bay, we created a parasite dataset of unprecedented size and taxonomic resolution. We sampled parasites of coral reef fishes from 19 replicate islands in the central equatorial Pacific to study how biodiversity and parasite burden covary.

In this dataset, we present all of the data we collected on parasite abundance in coral reef fishes. We sampled 17 species (Acanthurus nigricans, Cephalopholis argus, Cephalopholis urodeta, Chromis iomelas, Chromis margaritifer, Ctenochaetus marginatus, Ctenochaetus striatus, Paracirrhites arcatus, Plectroglyphidodon dickii, Pseudanthias bartlettorum, Pseudanthias dispar, Pseudanthias mooreanus, Pseudanthias olivaceus, Pseudanthias pascalus, Pseudanthias spp., Stegastes aureus, Stegastes fasciolatus) across three archipelagos and 19 islands (Jarvis, Kingman, Kiritimati, Palmyra, Tabuaeran, and Teraina in the Northern Line Islands; Flint, Malden, Millennium, Starbuck, and Vostok in the Southern Line Islands; Huahine, Moorea, Raiatea, Rangiroa, Tahiti, Takapoto, Tetiaroa, and Tikehau in French Polynesia), for a total of 5,251 fish. These 17 broadly distributed host species represent a large spectrum of body sizes, including multiple taxonomic and trophic groups. Included in the dataset are specimens collected from expeditions mounted in 2009, 2010, 2011, 2013, 2019, 2020, and 2021. 

Fish were collected with three-pronged spears and hand-nets, individually labeled and bagged, and frozen for transport before being thawed and evaluated for parasites. Parasitological dissections were designed to detect all multi-cellular (i.e., metazoan) parasites other than myxozoans, but would not have detected viral, bacterial, protozoal, or fungal parasites. Parasites were identified to the lowest possible taxonomic level and grouped into their broad parasite taxonomic grouping (i.e., Acanthocephalan, Cestoda, Copepoda, Isopoda, Monogenea, Other Crustacea, Trematoda, Nematoda) and transmission strategy (i.e., complex life cycle versus direct transmission).</gco:CharacterString>
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In a joint collaborative research project among the University of Washington, Scripps Institution of Oceanography at UC San Diego, and California State University Monterey Bay, we created a parasite dataset of unprecedented size and taxonomic resolution. We sampled parasites of coral reef fishes from 19 replicate islands in the central equatorial Pacific to study how biodiversity and parasite burden covary.

In this dataset, we present all of the data we collected on parasite abundance in coral reef fishes. We sampled 17 species (Acanthurus nigricans, Cephalopholis argus, Cephalopholis urodeta, Chromis iomelas, Chromis margaritifer, Ctenochaetus marginatus, Ctenochaetus striatus, Paracirrhites arcatus, Plectroglyphidodon dickii, Pseudanthias bartlettorum, Pseudanthias dispar, Pseudanthias mooreanus, Pseudanthias olivaceus, Pseudanthias pascalus, Pseudanthias spp., Stegastes aureus, Stegastes fasciolatus) across three archipelagos and 19 islands (Jarvis, Kingman, Kiritimati, Palmyra, Tabuaeran, and Teraina in the Northern Line Islands; Flint, Malden, Millennium, Starbuck, and Vostok in the Southern Line Islands; Huahine, Moorea, Raiatea, Rangiroa, Tahiti, Takapoto, Tetiaroa, and Tikehau in French Polynesia), for a total of 5,251 fish. These 17 broadly distributed host species represent a large spectrum of body sizes, including multiple taxonomic and trophic groups. Included in the dataset are specimens collected from expeditions mounted in 2009, 2010, 2011, 2013, 2019, 2020, and 2021. 

Fish were collected with three-pronged spears and hand-nets, individually labeled and bagged, and frozen for transport before being thawed and evaluated for parasites. Parasitological dissections were designed to detect all multi-cellular (i.e., metazoan) parasites other than myxozoans, but would not have detected viral, bacterial, protozoal, or fungal parasites. Parasites were identified to the lowest possible taxonomic level and grouped into their broad parasite taxonomic grouping (i.e., Acanthocephalan, Cestoda, Copepoda, Isopoda, Monogenea, Other Crustacea, Trematoda, Nematoda) and transmission strategy (i.e., complex life cycle versus direct transmission).</gco:CharacterString>
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                    <gco:CharacterString>String</gco:CharacterString>
                  </gco:aName>
                </gco:TypeName>
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          <gmd:descriptor>
            <gco:CharacterString>Psite_lsid</gco:CharacterString>
          </gmd:descriptor>
          <gmd:units xlink:href="https://unitsofmeasure.org/ucum.html#1"/>
        </gmd:MD_Band>
      </gmd:dimension>
      <gmd:dimension>
        <gmd:MD_Band>
          <gmd:sequenceIdentifier>
            <gco:MemberName>
              <gco:aName>
                <gco:CharacterString>fish_LSID</gco:CharacterString>
              </gco:aName>
              <gco:attributeType>
                <gco:TypeName>
                  <gco:aName>
                    <gco:CharacterString>String</gco:CharacterString>
                  </gco:aName>
                </gco:TypeName>
              </gco:attributeType>
            </gco:MemberName>
          </gmd:sequenceIdentifier>
          <gmd:descriptor>
            <gco:CharacterString>Fish_lsid</gco:CharacterString>
          </gmd:descriptor>
          <gmd:units xlink:href="https://unitsofmeasure.org/ucum.html#1"/>
        </gmd:MD_Band>
      </gmd:dimension>
      <gmd:dimension>
        <gmd:MD_Band>
          <gmd:sequenceIdentifier>
            <gco:MemberName>
              <gco:aName>
                <gco:CharacterString>psite_AphiaID</gco:CharacterString>
              </gco:aName>
              <gco:attributeType>
                <gco:TypeName>
                  <gco:aName>
                    <gco:CharacterString>String</gco:CharacterString>
                  </gco:aName>
                </gco:TypeName>
              </gco:attributeType>
            </gco:MemberName>
          </gmd:sequenceIdentifier>
          <gmd:descriptor>
            <gco:CharacterString>Psite_aphiaid</gco:CharacterString>
          </gmd:descriptor>
          <gmd:units xlink:href="https://unitsofmeasure.org/ucum.html#1"/>
        </gmd:MD_Band>
      </gmd:dimension>
      <gmd:dimension>
        <gmd:MD_Band>
          <gmd:sequenceIdentifier>
            <gco:MemberName>
              <gco:aName>
                <gco:CharacterString>fish_AphiaID</gco:CharacterString>
              </gco:aName>
              <gco:attributeType>
                <gco:TypeName>
                  <gco:aName>
                    <gco:CharacterString>String</gco:CharacterString>
                  </gco:aName>
                </gco:TypeName>
              </gco:attributeType>
            </gco:MemberName>
          </gmd:sequenceIdentifier>
          <gmd:descriptor>
            <gco:CharacterString>Fish_aphiaid</gco:CharacterString>
          </gmd:descriptor>
          <gmd:units xlink:href="https://unitsofmeasure.org/ucum.html#1"/>
        </gmd:MD_Band>
      </gmd:dimension>
    </gmi:MI_CoverageDescription>
  </gmd:contentInfo>
  <gmd:distributionInfo>
    <gmd:MD_Distribution>
      <gmd:distributor>
        <gmd:MD_Distributor>
          <gmd:distributorContact>
            <gmd:CI_ResponsibleParty>
              <gmd:individualName>
                <gco:CharacterString>Adam Shepherd</gco:CharacterString>
              </gmd:individualName>
              <gmd:organisationName>
                <gco:CharacterString>BCO-DMO</gco:CharacterString>
              </gmd:organisationName>
              <gmd:contactInfo>
                <gmd:CI_Contact>
                  <gmd:phone>
                    <gmd:CI_Telephone>
                      <gmd:voice>
                        <gco:CharacterString>508-289-2772</gco:CharacterString>
                      </gmd:voice>
                    </gmd:CI_Telephone>
                  </gmd:phone>
                  <gmd:address>
                    <gmd:CI_Address>
                      <gmd:deliveryPoint>
                        <gco:CharacterString>266 Woods Hole Rd. MS#36</gco:CharacterString>
                      </gmd:deliveryPoint>
                      <gmd:city>
                        <gco:CharacterString>Woods Hole</gco:CharacterString>
                      </gmd:city>
                      <gmd:administrativeArea>
                        <gco:CharacterString>MA</gco:CharacterString>
                      </gmd:administrativeArea>
                      <gmd:postalCode>
                        <gco:CharacterString>02543</gco:CharacterString>
                      </gmd:postalCode>
                      <gmd:country>
                        <gco:CharacterString>USA</gco:CharacterString>
                      </gmd:country>
                      <gmd:electronicMailAddress>
                        <gco:CharacterString>erddap@bco-dmo.org</gco:CharacterString>
                      </gmd:electronicMailAddress>
                    </gmd:CI_Address>
                  </gmd:address>
                </gmd:CI_Contact>
              </gmd:contactInfo>
              <gmd:role>
                <gmd:CI_RoleCode codeList="https://data.noaa.gov/resources/iso19139/schema/resources/Codelist/gmxCodelists.xml#gmd:CI_RoleCode" codeListValue="distributor">distributor</gmd:CI_RoleCode>
              </gmd:role>
            </gmd:CI_ResponsibleParty>
          </gmd:distributorContact>
          <gmd:distributorFormat>
            <gmd:MD_Format>
              <gmd:name>
                <gco:CharacterString>OPeNDAP</gco:CharacterString>
              </gmd:name>
              <gmd:version>
                <gco:CharacterString>DAP/2.0</gco:CharacterString>
              </gmd:version>
            </gmd:MD_Format>
          </gmd:distributorFormat>
          <gmd:distributorTransferOptions>
            <gmd:MD_DigitalTransferOptions>
              <gmd:onLine>
                <gmd:CI_OnlineResource>
                  <gmd:linkage>
                    <gmd:URL>https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_945218_v1.html</gmd:URL>
                  </gmd:linkage>
                  <gmd:protocol>
                    <gco:CharacterString>order</gco:CharacterString>
                  </gmd:protocol>
                  <gmd:name>
                    <gco:CharacterString>Data Subset Form</gco:CharacterString>
                  </gmd:name>
                  <gmd:description>
                    <gco:CharacterString>ERDDAP's version of the OPeNDAP .html web page for this dataset. Specify a subset of the dataset and download the data via OPeNDAP or in many different file types.</gco:CharacterString>
                  </gmd:description>
                  <gmd:function>
                    <gmd:CI_OnLineFunctionCode codeList="http://www.isotc211.org/2005/resources/Codelist/gmxCodelists.xml#CI_OnLineFunctionCode" codeListValue="download">download</gmd:CI_OnLineFunctionCode>
                  </gmd:function>
                </gmd:CI_OnlineResource>
              </gmd:onLine>
            </gmd:MD_DigitalTransferOptions>
          </gmd:distributorTransferOptions>
          <gmd:distributorTransferOptions>
            <gmd:MD_DigitalTransferOptions>
              <gmd:onLine>
                <gmd:CI_OnlineResource>
                  <gmd:linkage>
                    <gmd:URL>https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_945218_v1.graph</gmd:URL>
                  </gmd:linkage>
                  <gmd:protocol>
                    <gco:CharacterString>order</gco:CharacterString>
                  </gmd:protocol>
                  <gmd:name>
                    <gco:CharacterString>Make-A-Graph Form</gco:CharacterString>
                  </gmd:name>
                  <gmd:description>
                    <gco:CharacterString>ERDDAP's Make-A-Graph .html web page for this dataset. Create an image with a map or graph of a subset of the data.</gco:CharacterString>
                  </gmd:description>
                  <gmd:function>
                    <gmd:CI_OnLineFunctionCode codeList="http://www.isotc211.org/2005/resources/Codelist/gmxCodelists.xml#CI_OnLineFunctionCode" codeListValue="mapDigital">mapDigital</gmd:CI_OnLineFunctionCode>
                  </gmd:function>
                </gmd:CI_OnlineResource>
              </gmd:onLine>
            </gmd:MD_DigitalTransferOptions>
          </gmd:distributorTransferOptions>
        </gmd:MD_Distributor>
      </gmd:distributor>
    </gmd:MD_Distribution>
  </gmd:distributionInfo>
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    <gmd:MD_MaintenanceInformation>
      <gmd:maintenanceAndUpdateFrequency gco:nilReason="unknown"/>
      <gmd:maintenanceNote>
        <gco:CharacterString>This record was created from dataset metadata by ERDDAP Version 2.22</gco:CharacterString>
      </gmd:maintenanceNote>
    </gmd:MD_MaintenanceInformation>
  </gmd:metadataMaintenance>
</gmi:MI_Metadata>
