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Dataset Title:	[Metagenome sequencing samples] - Contextual data for samples collected for metagenome sequencing from the deep subseafloor biosphere as accessed via CORKs along the Juan de Fuca Ridge flank in the Northeast Pacific Ocean between 2008 and 2014 (Collaborative Research: Illuminating microbes and their viruses within the dark ocean crust through strain-level approaches)
Institution:	BCO-DMO   (Dataset ID: bcodmo_dataset_945915_v1)
Range:	longitude = -128.6487 to -127.7592°E, latitude = 47.75348 to 47.88745°N
Information:	Summary | License | FGDC | ISO 19115 | Metadata | Background | Data Access Form | Files

 

Graph Type:  lines linesAndMarkers markers sticks vectors X Axis:  Collection_Year Collection_Day latitude longitude IMG_Genome_ID Y Axis:  Collection_Year Collection_Day latitude longitude IMG_Genome_ID Color:  Collection_Year Collection_Day latitude longitude IMG_Genome_ID   Constraints Optional Constraint #1 Optional Constraint #2 Sample_Type Sample_Name DNA_Isolation_Method Collection_Date Collection_Year Collection_Month Collection_Day Sample_Source Fluid_Delivery_Line Environment latitude longitude Depth Area Full_Sample_Name_and_Description IMG_Genome_ID NCBI_Bioproject_Accession NCBI_Biosample_Accession SRA_ID     != =~ <= >= = < >     != =~ <= >= = < > Sample_Type Sample_Name DNA_Isolation_Method Collection_Date Collection_Year Collection_Month Collection_Day Sample_Source Fluid_Delivery_Line Environment latitude longitude Depth Area Full_Sample_Name_and_Description IMG_Genome_ID NCBI_Bioproject_Accession NCBI_Biosample_Accession SRA_ID     != =~ <= >= = < >     != =~ <= >= = < > Sample_Type Sample_Name DNA_Isolation_Method Collection_Date Collection_Year Collection_Month Collection_Day Sample_Source Fluid_Delivery_Line Environment latitude longitude Depth Area Full_Sample_Name_and_Description IMG_Genome_ID NCBI_Bioproject_Accession NCBI_Biosample_Accession SRA_ID     != =~ <= >= = < >     != =~ <= >= = < > Sample_Type Sample_Name DNA_Isolation_Method Collection_Date Collection_Year Collection_Month Collection_Day Sample_Source Fluid_Delivery_Line Environment latitude longitude Depth Area Full_Sample_Name_and_Description IMG_Genome_ID NCBI_Bioproject_Accession NCBI_Biosample_Accession SRA_ID     != =~ <= >= = < >     != =~ <= >= = < > Sample_Type Sample_Name DNA_Isolation_Method Collection_Date Collection_Year Collection_Month Collection_Day Sample_Source Fluid_Delivery_Line Environment latitude longitude Depth Area Full_Sample_Name_and_Description IMG_Genome_ID NCBI_Bioproject_Accession NCBI_Biosample_Accession SRA_ID     != =~ <= >= = < >     != =~ <= >= = < >   Server-side Functions  distinct() orderBy orderByDescending orderByClosest orderByCount orderByLimit orderByMax orderByMin orderByMinMax orderByMean orderBySum (" Sample_Type Sample_Name DNA_Isolation_Method Collection_Date Collection_Year Collection_Month Collection_Day Sample_Source Fluid_Delivery_Line Environment latitude longitude Depth Area Full_Sample_Name_and_Description IMG_Genome_ID NCBI_Bioproject_Accession NCBI_Biosample_Accession SRA_ID Sample_Type Sample_Name DNA_Isolation_Method Collection_Date Collection_Year Collection_Month Collection_Day Sample_Source Fluid_Delivery_Line Environment latitude longitude Depth Area Full_Sample_Name_and_Description IMG_Genome_ID NCBI_Bioproject_Accession NCBI_Biosample_Accession SRA_ID Sample_Type Sample_Name DNA_Isolation_Method Collection_Date Collection_Year Collection_Month Collection_Day Sample_Source Fluid_Delivery_Line Environment latitude longitude Depth Area Full_Sample_Name_and_Description IMG_Genome_ID NCBI_Bioproject_Accession NCBI_Biosample_Accession SRA_ID Sample_Type Sample_Name DNA_Isolation_Method Collection_Date Collection_Year Collection_Month Collection_Day Sample_Source Fluid_Delivery_Line Environment latitude longitude Depth Area Full_Sample_Name_and_Description IMG_Genome_ID NCBI_Bioproject_Accession NCBI_Biosample_Accession SRA_ID ")   Graph Settings Marker Type:  None Plus X Dot Square Filled Square Circle Filled Circle Up Triangle Filled Up Triangle Borderless Filled Square Borderless Filled Circle Borderless Filled Up Triangle  Size:  3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 Color:  Color Bar:  BlackBlueWhite BlackGreenWhite BlackRedWhite BlackWhite BlueWhiteRed BlueWideWhiteRed LightRainbow Ocean OceanDepth Rainbow Rainbow2 Rainfall ReverseRainbow RedWhiteBlue RedWhiteBlue2 RedWideWhiteBlue Spectrum Topography TopographyDepth WhiteBlueBlack WhiteGreenBlack WhiteRedBlack WhiteBlack YellowRed KT_algae KT_amp KT_balance KT_curl KT_deep KT_delta KT_dense KT_gray KT_haline KT_ice KT_matter KT_oxy KT_phase KT_solar KT_speed KT_tempo KT_thermal KT_turbid  Continuity:  Continuous Discrete  Scale:  Linear Log    Minimum:   Maximum:   N Sections:  2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 Draw land mask:  under over outline off Y Axis Minimum:   Maximum:    Ascending Descending Linear Log   Redraw the Graph (Please be patient. It may take a while to get the data.)   Optional: Then set the File Type: .asc .csv .csvp .csv0 .dataTable .das .dds .dods .esriCsv .fgdc .geoJson .graph .help .html .htmlTable .iso19115 .itx .json .jsonlCSV1 .jsonlCSV .jsonlKVP .mat .nc .ncHeader .ncCF .ncCFHeader .ncCFMA .ncCFMAHeader .nccsv .nccsvMetadata .ncoJson .odvTxt .subset .tsv .tsvp .tsv0 .wav .xhtml .kml .smallPdf .pdf .largePdf .smallPng .png .largePng .transparentPng (File Type information) and or view the URL: (Documentation / Bypass this form )

Click on the map to specify a new center point. Zoom:

 

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Things You Can Do With Your Graphs

Well, you can do anything you want with your graphs, of course. But some things you might not have considered are:

• Web page authors can embed a graph of the latest data in a web page using HTML <img> tags.
• Anyone can use ERDDAPs Slide Sorter to build a personal web page that displays graphs with the latest data (or other images or HTML content), each in its own, draggable slide.
   

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The Dataset Attribute Structure (.das) for this Dataset

Attributes {
 s {
  Sample_Type {
    String long_name "Sample_type";
    String units "unitless";
  }
  Sample_Name {
    String long_name "Sample_name";
    String units "unitless";
  }
  DNA_Isolation_Method {
    String long_name "Dna_isolation_method";
    String units "unitless";
  }
  Collection_Date {
    String long_name "Collection_date";
    String units "unitless";
  }
  Collection_Year {
    Int32 actual_range 2008, 2014;
    String long_name "Collection_year";
    String units "unitless";
  }
  Collection_Month {
    String long_name "Collection_month";
    String units "unitless";
  }
  Collection_Day {
    Int32 actual_range 3, 31;
    String long_name "Collection_day";
    String units "unitless";
  }
  Sample_Source {
    String long_name "Sample_source";
    String units "unitless";
  }
  Fluid_Delivery_Line {
    String long_name "Fluid_delivery_line";
    String units "unitless";
  }
  Environment {
    String long_name "Environment";
    String units "unitless";
  }
  latitude {
    String _CoordinateAxisType "Lat";
    Float32 actual_range 47.75348, 47.88745;
    String axis "Y";
    String ioos_category "Location";
    String long_name "Latitude";
    String standard_name "latitude";
    String units "degrees_north";
  }
  longitude {
    String _CoordinateAxisType "Lon";
    Float32 actual_range -128.6487, -127.7592;
    String axis "X";
    String ioos_category "Location";
    String long_name "Longitude";
    String standard_name "longitude";
    String units "degrees_east";
  }
  Depth {
    String long_name "Depth";
    String units "msb";
  }
  Area {
    String long_name "Area";
    String units "unitless";
  }
  Full_Sample_Name_and_Description {
    String long_name "Full_sample_name_and_description";
    String units "unitless";
  }
  IMG_Genome_ID {
    String long_name "Img_genome_id";
    String units "unitless";
  }
  NCBI_Bioproject_Accession {
    String long_name "Ncbi_bioproject_accession";
    String units "unitless";
  }
  NCBI_Biosample_Accession {
    String long_name "Ncbi_biosample_accession";
    String units "unitless";
  }
  SRA_ID {
    String long_name "Sra_id";
    String units "unitless";
  }
 }
  NC_GLOBAL {
    String cdm_data_type "Other";
    String Conventions "COARDS, CF-1.6, ACDD-1.3";
    String creator_email "info@bco-dmo.org";
    String creator_name "BCO-DMO";
    String creator_url "https://www.bco-dmo.org/";
    String doi "10.26008/1912/bco-dmo.945915.1";
    Float64 Easternmost_Easting -127.7592;
    Float64 geospatial_lat_max 47.88745;
    Float64 geospatial_lat_min 47.75348;
    String geospatial_lat_units "degrees_north";
    Float64 geospatial_lon_max -127.7592;
    Float64 geospatial_lon_min -128.6487;
    String geospatial_lon_units "degrees_east";
    String history 
"2025-01-31T07:10:31Z (local files)
2025-01-31T07:10:31Z https://erddap.bco-dmo.org/tabledap/bcodmo_dataset_945915_v1.das";
    String infoUrl "https://www.bco-dmo.org/dataset/945915";
    String institution "BCO-DMO";
    String license 
"The data may be used and redistributed for free but is not intended
for legal use, since it may contain inaccuracies. Neither the data
Contributor, ERD, NOAA, nor the United States Government, nor any
of their employees or contractors, makes any warranty, express or
implied, including warranties of merchantability and fitness for a
particular purpose, or assumes any legal liability for the accuracy,
completeness, or usefulness, of this information.";
    Float64 Northernmost_Northing 47.88745;
    String sourceUrl "(local files)";
    Float64 Southernmost_Northing 47.75348;
    String summary "This dataset provides contextual information about samples used for metagenome sequencing. These samples were collected from pristine crustal fluids sampled via CORK observatories along the Juan de Fuca Ridge flank in the Northeast Pacific Ocean off the coast of North America. Also included are metadata for seawater and sediment metagenomes that have been sequenced as controls. All of the data are publicly available via the National Center for Biotechnology Information (NCBI) accession numbers provided in the dataset (BioProject numbers PRJNA655018 to PRJNA655040).";
    String title "[Metagenome sequencing samples] - Contextual data for samples collected for metagenome sequencing from the deep subseafloor biosphere as accessed via CORKs along the Juan de Fuca Ridge flank in the Northeast Pacific Ocean between 2008 and 2014 (Collaborative Research: Illuminating microbes and their viruses within the dark ocean crust through strain-level approaches)";
    Float64 Westernmost_Easting -128.6487;
  }
}

 

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Using tabledap to Request Data and Graphs from Tabular Datasets

tabledap lets you request a data subset, a graph, or a map from a tabular dataset (for example, buoy data), via a specially formed URL. tabledap uses the OPeNDAP Data Access Protocol (DAP) and its selection constraints.

The URL specifies what you want: the dataset, a description of the graph or the subset of the data, and the file type for the response.

• (easy) You can get data by using the dataset's Data Access Form or Subset form. They make the URL for you.
• (easy) You can make a graph or map by using the dataset's Make A Graph form. It makes the URL for you.
• (not hard) You can bypass the forms and get the data or make a graph or map by generating the URL by hand or with a computer program or script.

Tabledap request URLs must be in the form
https://coastwatch.pfeg.noaa.gov/erddap/tabledap/datasetID.fileType{?query}
For example,
https://coastwatch.pfeg.noaa.gov/erddap/tabledap/pmelTaoDySst.htmlTable?longitude,latitude,time,station,wmo_platform_code,T_25&time>=2015-05-23T12:00:00Z&time<=2015-05-31T12:00:00Z
Thus, the query is often a comma-separated list of desired variable names, followed by a collection of constraints (e.g., variable<value), each preceded by '&' (which is interpreted as "AND").

For details, see the tabledap Documentation.

 

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