ERDDAP > tabledap > Data Access Form

Dataset Title:	[Integrative taxonomy of tectractinellid sponges] - Morphological and genetic data of tetractinellid sponges from Kāne'ohe Bay, Hawai'i based on specimens collected between 2016 and 2023 (Testing the most striking tropical marine biodiversity gradient on the planet: does it hold for sponges?)
Institution:	BCO-DMO   (Dataset ID: bcodmo_dataset_986886_v1)
Information:	Summary | License | FGDC | ISO 19115 | Metadata | Background | Files | Make a graph

 

Variable	Optional Constraint #1		Optional Constraint #2		Minimum	Maximum
Species (unitless)	!= =~ <= >= = < >		!= =~ <= >= = < >		"Geodia cf. papyracea"	"Stryphnus huna sp...."
Type (unitless)	!= =~ <= >= = < >		!= =~ <= >= = < >		"holotype"	"paratype"
FMNH (unitless)	!= =~ <= >= = < >		!= =~ <= >= = < >		"UF 3840"	"UF 3978"
BPBM_cat_no (unitless)	!= =~ <= >= = < >		!= =~ <= >= = < >		"BPBM C1599"	"BPBM C1737"
Field_code (unitless)	!= =~ <= >= = < >		!= =~ <= >= = < >		"53020231"	"SLC08042259"
COI_Genbank_acc_no (unitless)	!= =~ <= >= = < >		!= =~ <= >= = < >		"MW059040"	"PQ305258"
Genbank_acc_no_28S (unitless)	!= =~ <= >= = < >		!= =~ <= >= = < >		"MW016037/PQ282295"	"PQ282293/PQ282294"
Date (unitless)	!= =~ <= >= = < >		!= =~ <= >= = < >		"2016-12-19"	"2023-10-26"
latitude (degrees_north)	!= =~ <= >= = < >		!= =~ <= >= = < >		21.4334	21.5085
longitude (Long, degrees_east)	!= =~ <= >= = < >		!= =~ <= >= = < >		-157.8295	-157.7863
Anatrienes_rhabdome_LXW (micrometers)	!= =~ <= >= = < >		!= =~ <= >= = < >		"294-410.6-487.6 x ..."	"rare, 835.8-889.5-..."
Anatrienes_cladome_diameter (micrometers)	!= =~ <= >= = < >		!= =~ <= >= = < >		"27.3-46.6-57.8"	"76.6-89.4-108.5"
Orthotriaenes_Rhabdome_LXW (micrometers)	!= =~ <= >= = < >		!= =~ <= >= = < >		"451.9-667.3-775.2 ..."	"692.9-918.4-1188.1..."
Orthotriaenes_cladome_diameter (micrometers)	!= =~ <= >= = < >		!= =~ <= >= = < >		"128.8-153.2-180.4"	"212.5-259.8-288 (n..."
Plagiotriaenes_Rhabdome_LXW (micrometers)	!= =~ <= >= = < >		!= =~ <= >= = < >		"112.3-266.4-497.1 ..."	"no length, all bro..."
Plagiotrienes_cladome_diameter (micrometers)	!= =~ <= >= = < >		!= =~ <= >= = < >		"119.4-180.6-243.2"	"96-249.4-317.9 (n=6)"
Oxeas_LXW (micrometers)	!= =~ <= >= = < >		!= =~ <= >= = < >		"383.7-842.6-1174.5..."	"800.4-953.4-1063.6..."
Microscleres_Acnthostrongylasters_diameter (micrometers)	!= =~ <= >= = < >		!= =~ <= >= = < >		"10.8-12.8-15"	"9.7-12.5-15"
Microscleres_Tylasters_diameter (micrometers)	!= =~ <= >= = < >		!= =~ <= >= = < >		"5.6-6.7-8"	"8.2-9.7-11"
Microscleres_Acnthospherasters_diameter (micrometers)	!= =~ <= >= = < >		!= =~ <= >= = < >		"6-7-8.4"	"6.2-7.8-9"
Styles (micrometers)	!= =~ <= >= = < >		!= =~ <= >= = < >		"518.7 x 17.3 (n=1)"	"787.8 x 35.7 (n=1)"
Oxea_I_LXW (micrometers)	!= =~ <= >= = < >		!= =~ <= >= = < >		"151.9-306.5-396.3 ..."	"406.0-748.9-967.8 ..."
Oxea_II_LXW (micrometers)	!= =~ <= >= = < >		!= =~ <= >= = < >		"1148.8-1473.5-1861..."	"799.7-1012.8-1154...."
Microscleres_Sanidasters_Length (micrometers)	!= =~ <= >= = < >		!= =~ <= >= = < >		"8.8-12.6-16.6"	"8.8-12.6-16.6"
Microscleres_Oxyasters_Streptasters_diameter (micrometers)	!= =~ <= >= = < >		!= =~ <= >= = < >		"13.9-36.2-51 (n=6)"	"13.9-36.2-51 (n=6)"
Monaene_Rhabdome_LXW (micrometers)	!= =~ <= >= = < >		!= =~ <= >= = < >		"760.6-804.9-849.2 ..."	"822 x 22.5 (n=1)"
Microscleres_sterrasters_diameter (micrometers)	!= =~ <= >= = < >		!= =~ <= >= = < >		"19.8-38.2-52 (n=20)"	"36.1-47.6-57.8"
Microsclere_acanthoxyaster_diameter (micrometers)	!= =~ <= >= = < >		!= =~ <= >= = < >		"15.7-23.1-29.6 (n=..."	"33-37.5-43.3 (n=7)"
Microsclere_acanthostrongylaster_diameter (micrometers)	!= =~ <= >= = < >		!= =~ <= >= = < >		"3.2-4.5-5.7 (n=17)"	"6.8-7.5-8.4 (n=10)"

 

Server-side Functions

distinct()

orderBy orderByDescending orderByClosest orderByCount orderByLimit orderByMax orderByMin orderByMinMax orderByMean orderBySum (" Species Type FMNH BPBM_cat_no Field_code COI_Genbank_acc_no Genbank_acc_no_28S Date latitude longitude Anatrienes_rhabdome_LXW Anatrienes_cladome_diameter Orthotriaenes_Rhabdome_LXW Orthotriaenes_cladome_diameter Plagiotriaenes_Rhabdome_LXW Plagiotrienes_cladome_diameter Oxeas_LXW Microscleres_Acnthostrongylasters_diameter Microscleres_Tylasters_diameter Microscleres_Acnthospherasters_diameter Styles Oxea_I_LXW Oxea_II_LXW Microscleres_Sanidasters_Length Microscleres_Oxyasters_Streptasters_diameter Monaene_Rhabdome_LXW Microscleres_sterrasters_diameter Microsclere_acanthoxyaster_diameter Microsclere_acanthostrongylaster_diameter Species Type FMNH BPBM_cat_no Field_code COI_Genbank_acc_no Genbank_acc_no_28S Date latitude longitude Anatrienes_rhabdome_LXW Anatrienes_cladome_diameter Orthotriaenes_Rhabdome_LXW Orthotriaenes_cladome_diameter Plagiotriaenes_Rhabdome_LXW Plagiotrienes_cladome_diameter Oxeas_LXW Microscleres_Acnthostrongylasters_diameter Microscleres_Tylasters_diameter Microscleres_Acnthospherasters_diameter Styles Oxea_I_LXW Oxea_II_LXW Microscleres_Sanidasters_Length Microscleres_Oxyasters_Streptasters_diameter Monaene_Rhabdome_LXW Microscleres_sterrasters_diameter Microsclere_acanthoxyaster_diameter Microsclere_acanthostrongylaster_diameter Species Type FMNH BPBM_cat_no Field_code COI_Genbank_acc_no Genbank_acc_no_28S Date latitude longitude Anatrienes_rhabdome_LXW Anatrienes_cladome_diameter Orthotriaenes_Rhabdome_LXW Orthotriaenes_cladome_diameter Plagiotriaenes_Rhabdome_LXW Plagiotrienes_cladome_diameter Oxeas_LXW Microscleres_Acnthostrongylasters_diameter Microscleres_Tylasters_diameter Microscleres_Acnthospherasters_diameter Styles Oxea_I_LXW Oxea_II_LXW Microscleres_Sanidasters_Length Microscleres_Oxyasters_Streptasters_diameter Monaene_Rhabdome_LXW Microscleres_sterrasters_diameter Microsclere_acanthoxyaster_diameter Microsclere_acanthostrongylaster_diameter Species Type FMNH BPBM_cat_no Field_code COI_Genbank_acc_no Genbank_acc_no_28S Date latitude longitude Anatrienes_rhabdome_LXW Anatrienes_cladome_diameter Orthotriaenes_Rhabdome_LXW Orthotriaenes_cladome_diameter Plagiotriaenes_Rhabdome_LXW Plagiotrienes_cladome_diameter Oxeas_LXW Microscleres_Acnthostrongylasters_diameter Microscleres_Tylasters_diameter Microscleres_Acnthospherasters_diameter Styles Oxea_I_LXW Oxea_II_LXW Microscleres_Sanidasters_Length Microscleres_Oxyasters_Streptasters_diameter Monaene_Rhabdome_LXW Microscleres_sterrasters_diameter Microsclere_acanthoxyaster_diameter Microsclere_acanthostrongylaster_diameter Species Type FMNH BPBM_cat_no Field_code COI_Genbank_acc_no Genbank_acc_no_28S Date latitude longitude Anatrienes_rhabdome_LXW Anatrienes_cladome_diameter Orthotriaenes_Rhabdome_LXW Orthotriaenes_cladome_diameter Plagiotriaenes_Rhabdome_LXW Plagiotrienes_cladome_diameter Oxeas_LXW Microscleres_Acnthostrongylasters_diameter Microscleres_Tylasters_diameter Microscleres_Acnthospherasters_diameter Styles Oxea_I_LXW Oxea_II_LXW Microscleres_Sanidasters_Length Microscleres_Oxyasters_Streptasters_diameter Monaene_Rhabdome_LXW Microscleres_sterrasters_diameter Microsclere_acanthoxyaster_diameter Microsclere_acanthostrongylaster_diameter ")

File type: (more information) .asc - View OPeNDAP-style ISO-8859-1 comma-separated text. .csv - Download a ISO-8859-1 comma-separated text table (line 1: names; line 2: units; ISO 8601 times). .csvp - Download a ISO-8859-1 .csv file with line 1: name (units). Times are ISO 8601 strings. .csv0 - Download a ISO-8859-1 .csv file without column names or units. Times are ISO 8601 strings. .dataTable - A JSON file formatted for use with the Google Visualization client library (Google Charts). .das - View the dataset's metadata via an ISO-8859-1 OPeNDAP Dataset Attribute Structure (DAS). .dds - View the dataset's structure via an ISO-8859-1 OPeNDAP Dataset Descriptor Structure (DDS). .dods - OPeNDAP clients use this to download the data in the DODS binary format. .esriCsv - Download a ISO_8859_1 .csv file for ESRI's ArcGIS 9.x and below (separate date and time columns). .fgdc - View the dataset's UTF-8 FGDC .xml metadata. .geoJson - Download longitude,latitude,otherColumns data as a UTF-8 GeoJSON .json file. .graph - View a Make A Graph web page. .help - View a web page with a description of tabledap. .html - View an OPeNDAP-style HTML Data Access Form. .htmlTable - View a UTF-8 .html web page with the data in a table. Times are ISO 8601 strings. .iso19115 - View the dataset's ISO 19115-2/19139 UTF-8 .xml metadata. .itx - Download an ISO-8859-1 Igor Text File. Each response column becomes a wave. .json - View a table-like UTF-8 JSON file (missing value = 'null'; times are ISO 8601 strings). .jsonlCSV1 - View a UTF-8 JSON Lines CSV file with column names on line 1 (mv = 'null'; times are ISO 8601 strings). .jsonlCSV - View a UTF-8 JSON Lines CSV file without column names (mv = 'null'; times are ISO 8601 strings). .jsonlKVP - View a UTF-8 JSON Lines file with Key:Value pairs (missing value = 'null'; times are ISO 8601 strings). .mat - Download a MATLAB binary file. .nc - Download a flat, table-like, NetCDF-3 binary file with COARDS/CF/ACDD metadata. .ncHeader - View the UTF-8 header (the metadata) for the NetCDF-3 .nc file. .ncCF - Download a NetCDF-3 CF Discrete Sampling Geometries file (Contiguous Ragged Array). .ncCFHeader - View the UTF-8 header (the metadata) for the .ncCF file. .ncCFMA - Download a NetCDF-3 CF Discrete Sampling Geometries file (Multidimensional Array). .ncCFMAHeader - View the UTF-8 header (the metadata) for the .ncCFMA file. .nccsv - Download a NetCDF-3-like 7-bit ASCII NCCSV .csv file with COARDS/CF/ACDD metadata. .nccsvMetadata - View the dataset's metadata as the top half of a 7-bit ASCII NCCSV .csv file. .ncoJson - Download a UTF-8 NCO lvl=2 JSON file with COARDS/CF/ACDD metadata. .odvTxt - Download longitude,latitude,time,otherColumns as an ISO-8859-1 ODV Generic Spreadsheet File (.txt). .subset - View an HTML form which uses faceted search to simplify picking subsets of the data. .tsv - Download a ISO-8859-1 tab-separated text table (line 1: names; line 2: units; ISO 8601 times). .tsvp - Download a ISO-8859-1 .tsv file with line 1: name (units). Times are ISO 8601 strings. .tsv0 - Download a ISO-8859-1 .tsv file without column names or units. Times are ISO 8601 strings. .wav - Download a .wav audio file. All columns must be numeric and of the same type. .xhtml - View a UTF-8 XHTML (XML) file with the data in a table. Times are ISO 8601 strings. .kml - View a .kml file, suitable for Google Earth. .smallPdf - View a small .pdf image file with a graph or map. .pdf - View a standard, medium-sized .pdf image file with a graph or map. .largePdf - View a large .pdf image file with a graph or map. .smallPng - View a small .png image file with a graph or map. .png - View a standard, medium-sized .png image file with a graph or map. .largePng - View a large .png image file with a graph or map. .transparentPng - View a .png image file (just the data, without axes, landmask, or legend).

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The Dataset Attribute Structure (.das) for this Dataset

Attributes {
 s {
  Species {
    String long_name "Species";
    String units "unitless";
  }
  Type {
    String long_name "Type";
    String units "unitless";
  }
  FMNH {
    String long_name "Fmnh";
    String units "unitless";
  }
  BPBM_cat_no {
    String long_name "Bpbm_cat_no";
    String units "unitless";
  }
  Field_code {
    String long_name "Field_code";
    String units "unitless";
  }
  COI_Genbank_acc_no {
    String long_name "Coi_genbank_acc_no";
    String units "unitless";
  }
  Genbank_acc_no_28S {
    String long_name "Genbank_acc_no_28s";
    String units "unitless";
  }
  Date {
    String long_name "Date";
    String units "unitless";
  }
  latitude {
    String _CoordinateAxisType "Lat";
    Float32 actual_range 21.4334, 21.5085;
    String axis "Y";
    String ioos_category "Location";
    String long_name "Latitude";
    String standard_name "latitude";
    String units "degrees_north";
  }
  longitude {
    String _CoordinateAxisType "Lon";
    Float32 actual_range -157.8295, -157.7863;
    String axis "X";
    String ioos_category "Location";
    String long_name "Long";
    String standard_name "longitude";
    String units "degrees_east";
  }
  Anatrienes_rhabdome_LXW {
    String long_name "Anatrienes_rhabdome_lxw";
    String units "micrometers";
  }
  Anatrienes_cladome_diameter {
    String long_name "Anatrienes_cladome_diameter";
    String units "micrometers";
  }
  Orthotriaenes_Rhabdome_LXW {
    String long_name "Orthotriaenes_rhabdome_lxw";
    String units "micrometers";
  }
  Orthotriaenes_cladome_diameter {
    String long_name "Orthotriaenes_cladome_diameter";
    String units "micrometers";
  }
  Plagiotriaenes_Rhabdome_LXW {
    String long_name "Plagiotriaenes_rhabdome_lxw";
    String units "micrometers";
  }
  Plagiotrienes_cladome_diameter {
    String long_name "Plagiotrienes_cladome_diameter";
    String units "micrometers";
  }
  Oxeas_LXW {
    String long_name "Oxeas_lxw";
    String units "micrometers";
  }
  Microscleres_Acnthostrongylasters_diameter {
    String long_name "Microscleres_acnthostrongylasters_diameter";
    String units "micrometers";
  }
  Microscleres_Tylasters_diameter {
    String long_name "Microscleres_tylasters_diameter";
    String units "micrometers";
  }
  Microscleres_Acnthospherasters_diameter {
    String long_name "Microscleres_acnthospherasters_diameter";
    String units "micrometers";
  }
  Styles {
    String long_name "Styles";
    String units "micrometers";
  }
  Oxea_I_LXW {
    String long_name "Oxea_i_lxw";
    String units "micrometers";
  }
  Oxea_II_LXW {
    String long_name "Oxea_ii_lxw";
    String units "micrometers";
  }
  Microscleres_Sanidasters_Length {
    String long_name "Microscleres_sanidasters_length";
    String units "micrometers";
  }
  Microscleres_Oxyasters_Streptasters_diameter {
    String long_name "Microscleres_oxyasters_streptasters_diameter";
    String units "micrometers";
  }
  Monaene_Rhabdome_LXW {
    String long_name "Monaene_rhabdome_lxw";
    String units "micrometers";
  }
  Microscleres_sterrasters_diameter {
    String long_name "Microscleres_sterrasters_diameter";
    String units "micrometers";
  }
  Microsclere_acanthoxyaster_diameter {
    String long_name "Microsclere_acanthoxyaster_diameter";
    String units "micrometers";
  }
  Microsclere_acanthostrongylaster_diameter {
    String long_name "Microsclere_acanthostrongylaster_diameter";
    String units "micrometers";
  }
 }
  NC_GLOBAL {
    String cdm_data_type "Other";
    String Conventions "COARDS, CF-1.6, ACDD-1.3";
    String creator_email "info@bco-dmo.org";
    String creator_name "BCO-DMO";
    String creator_url "https://www.bco-dmo.org/";
    String doi "10.26008/1912/bco-dmo.986886.1";
    Float64 Easternmost_Easting -157.7863;
    Float64 geospatial_lat_max 21.5085;
    Float64 geospatial_lat_min 21.4334;
    String geospatial_lat_units "degrees_north";
    Float64 geospatial_lon_max -157.7863;
    Float64 geospatial_lon_min -157.8295;
    String geospatial_lon_units "degrees_east";
    String history 
"2026-02-03T18:46:26Z (local files)
2026-02-03T18:46:26Z https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_986886_v1.html";
    String infoUrl "https://osprey.bco-dmo.org/dataset/986886";
    String institution "BCO-DMO";
    String license 
"The data may be used and redistributed for free but is not intended
for legal use, since it may contain inaccuracies. Neither the data
Contributor, ERD, NOAA, nor the United States Government, nor any
of their employees or contractors, makes any warranty, express or
implied, including warranties of merchantability and fitness for a
particular purpose, or assumes any legal liability for the accuracy,
completeness, or usefulness, of this information.";
    Float64 Northernmost_Northing 21.5085;
    String sourceUrl "(local files)";
    Float64 Southernmost_Northing 21.4334;
    String summary "Here we integrate molecular phylogeny and systematics to distinguish introduced species from those that are potentially native or endemic. We focus on the order Tetractinellida and document the transoceanic dispersal of Geodia papyracea from the Caribbean to Hawai'i, likely via the fouling of ship hauls navigating through the Panama Canal. Our integrative approach allowed us to describe new species of Stelletta, Stelletta kaluhiwa sp. nov., Stelletta cypheri sp. nov., Stelletta camvela sp. nov., Stelletta hewetta sp. nov., Stelletta brighti sp. nov., and one new species of Stryphnus, Stryphnus jonesi sp. nov; all collected from the reef cryptofauna. Specimens were barcoded using 28S and COI molecular markers, providing insights into the phenotypic plasticity of sponges and the phylogenetic placement of these new species based on morphological characters. Using both molecular phylogeny and traditional taxonomy enhances the accuracy of species identification and classification, contributing to a broader understanding of sponge biodiversity within the Hawaiian archipelago.";
    String title "[Integrative taxonomy of tectractinellid sponges] - Morphological and genetic data of tetractinellid sponges from Kāne'ohe Bay, Hawai'i based on specimens collected between 2016 and 2023 (Testing the most striking tropical marine biodiversity gradient on the planet: does it hold for sponges?)";
    Float64 Westernmost_Easting -157.8295;
  }
}

 

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Using tabledap to Request Data and Graphs from Tabular Datasets

tabledap lets you request a data subset, a graph, or a map from a tabular dataset (for example, buoy data), via a specially formed URL. tabledap uses the OPeNDAP Data Access Protocol (DAP) and its selection constraints.

The URL specifies what you want: the dataset, a description of the graph or the subset of the data, and the file type for the response.

• (easy) You can get data by using the dataset's Data Access Form or Subset form. They make the URL for you.
• (easy) You can make a graph or map by using the dataset's Make A Graph form. It makes the URL for you.
• (not hard) You can bypass the forms and get the data or make a graph or map by generating the URL by hand or with a computer program or script.

Tabledap request URLs must be in the form
https://coastwatch.pfeg.noaa.gov/erddap/tabledap/datasetID.fileType{?query}
For example,
https://coastwatch.pfeg.noaa.gov/erddap/tabledap/pmelTaoDySst.htmlTable?longitude,latitude,time,station,wmo_platform_code,T_25&time>=2015-05-23T12:00:00Z&time<=2015-05-31T12:00:00Z
Thus, the query is often a comma-separated list of desired variable names, followed by a collection of constraints (e.g., variable<value), each preceded by '&' (which is interpreted as "AND").

For details, see the tabledap Documentation.

 

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