Accessing BCO-DMO data
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BCO-DMO ERDDAP
Accessing BCO-DMO data |
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| Dataset Title: | [IODP385 16S, metagenomes and metatranscriptomes] - Raw amplicon, metagenomic and metatranscriptomic data from R/V JOIDES Resolution IODP-385 Guaymas Basin Tectonics and Biosphere expedition between September and November 2019 (Collaborative Research: Hydrothermal Fungi in the Guaymas Basin Hydrocarbon Ecosystem) 
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| Institution: | BCO-DMO (Dataset ID: bcodmo_dataset_994734_v1) |
| Information: | Summary
| License
| FGDC
| ISO 19115
| Metadata
| Background
| Files
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Attributes {
s {
BioProject {
String long_name "Bioproject";
String units "unitless";
}
SRA_Run_ID {
String long_name "Sra_run_id";
String units "unitless";
}
BioSample {
String long_name "Biosample";
String units "unitless";
}
AssayType {
String long_name "Assaytype";
String units "unitless";
}
Assay {
String long_name "Assay";
String units "unitless";
}
AvgSpotLen {
Int32 actual_range 265, 920;
String long_name "Avgspotlen";
String units "unitless";
}
Bases {
String long_name "Bases";
String units "unitless";
}
BioSampleModel {
String long_name "Biosamplemodel";
String units "unitless";
}
Bytes {
Float32 actual_range 4.0615e-4, 15.76;
String long_name "Bytes";
String units "unitless";
}
CenterName {
String long_name "Centername";
String units "unitless";
}
CollectionDate {
String long_name "Collectiondate";
String units "unitless";
}
SRA_Experiment_ID {
String long_name "Sra_experiment_id";
String units "unitless";
}
geo_loc_name_country {
String long_name "Geo_loc_name_country";
String units "unitless";
}
geo_loc_name_country_continent {
String long_name "Geo_loc_name_country_continent";
String units "unitless";
}
geo_loc_name {
String long_name "Geo_loc_name";
String units "unitless";
}
Instrument {
String long_name "Instrument";
String units "unitless";
}
latitude {
String _CoordinateAxisType "Lat";
Float32 actual_range 27.12, 27.63737;
String axis "Y";
String ioos_category "Location";
String long_name "Latitude";
String standard_name "latitude";
String units "degrees_north";
}
longitude {
String _CoordinateAxisType "Lon";
Float32 actual_range -111.8797, -111.13;
String axis "X";
String ioos_category "Location";
String long_name "Longitude";
String standard_name "longitude";
String units "degrees_east";
}
LibraryName {
String long_name "Libraryname";
String units "unitless";
}
LibraryLayout {
String long_name "Librarylayout";
String units "unitless";
}
LibrarySelection {
String long_name "Libraryselection";
String units "unitless";
}
LibrarySource {
String long_name "Librarysource";
String units "unitless";
}
Organism {
String long_name "Organism";
String units "unitless";
}
Platform {
String long_name "Platform";
String units "unitless";
}
ReleaseDate {
String long_name "Releasedate";
String units "unitless";
}
CreateDate {
String long_name "Createdate";
String units "unitless";
}
SampleName {
String long_name "Samplename";
String units "unitless";
}
IsolationSource {
String long_name "Isolationsource";
String units "unitless";
}
SampCollectDevice {
String long_name "Sampcollectdevice";
String units "unitless";
}
Depth_mbsf {
Float32 actual_range 0.76, 529.2;
String long_name "Depth_mbsf";
String units "meter (m)";
}
AmplificationPrimers {
String long_name "Amplificationprimers";
String units "unitless";
}
elev {
Float32 actual_range 1585.5, 2001.2;
String long_name "Elev";
String units "meter (m)";
}
env_broad_scale {
String long_name "Env_broad_scale";
String units "unitless";
}
env_local_scale {
String long_name "Env_local_scale";
String units "unitless";
}
env_medium {
String long_name "Env_medium";
String units "unitless";
}
rel_to_oxygen {
String long_name "Rel_to_oxygen";
String units "unitless";
}
}
NC_GLOBAL {
String cdm_data_type "Other";
String Conventions "COARDS, CF-1.6, ACDD-1.3";
String creator_email "info@bco-dmo.org";
String creator_name "BCO-DMO";
String creator_url "https://www.bco-dmo.org/";
String doi "10.26008/1912/bco-dmo.994734.1";
Float64 Easternmost_Easting -111.13;
Float64 geospatial_lat_max 27.63737;
Float64 geospatial_lat_min 27.12;
String geospatial_lat_units "degrees_north";
Float64 geospatial_lon_max -111.13;
Float64 geospatial_lon_min -111.8797;
String geospatial_lon_units "degrees_east";
String history
"2026-04-24T19:32:56Z (local files)
2026-04-24T19:32:56Z https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_994734_v1.html";
String infoUrl "https://osprey.bco-dmo.org/dataset/994734";
String institution "BCO-DMO";
String license
"The data may be used and redistributed for free but is not intended
for legal use, since it may contain inaccuracies. Neither the data
Contributor, ERD, NOAA, nor the United States Government, nor any
of their employees or contractors, makes any warranty, express or
implied, including warranties of merchantability and fitness for a
particular purpose, or assumes any legal liability for the accuracy,
completeness, or usefulness, of this information.";
Float64 Northernmost_Northing 27.63737;
String sourceUrl "(local files)";
Float64 Southernmost_Northing 27.12;
String summary
"International Ocean Discovery Program Expedition 385 (IODP385) drilled organic-rich sediments and intruded sills in the off-axis region and axial graben of the northern spreading segment of Guaymas Basin, Gulf of California. Guaymas Basin is characterized by high heat flow and magmatism in the form of sill intrusions into sediments, which extends tens of kilometers off axis. Sill intrusions provide transient heat sources that mobilize buried sedimentary carbon and drive hydrothermal circulation. The resulting thermal and geochemical gradients shape abundance, composition, and activity of the deep subsurface biosphere of the basin.
Among the aims of IODP385 was to examine the subsurface biosphere of Guaymas Basin and its responses and adaptations to hydrothermal conditions. Using high-throughput 16S ribosomal nucleic acid sequencing we examined linkages and feedbacks between mineral composition, temperature, geochemistry, and microbial populations. The metagenomic analyses of the hydrothermally heated, sediment layers of Guaymas Basin examined the distribution and activity patterns of bacteria and archaea along thermal, geochemical and cell count gradients. Analyses of gene expression of subsurface bacteria and archaea provided insights into their physiological adaptations to in situ subsurface conditions.
All available datasets can be found in the the National Center for Biotechnology Information (NCBI) GenBank database under the Bioproject accession number PRJNA909197.";
String title "[IODP385 16S, metagenomes and metatranscriptomes] - Raw amplicon, metagenomic and metatranscriptomic data from R/V JOIDES Resolution IODP-385 Guaymas Basin Tectonics and Biosphere expedition between September and November 2019 (Collaborative Research: Hydrothermal Fungi in the Guaymas Basin Hydrocarbon Ecosystem)";
Float64 Westernmost_Easting -111.8797;
}
}
Data Access Protocol (DAP) and its
selection constraints.
The URL specifies what you want: the dataset, a description of the graph or the subset of the data, and the file type for the response.
Tabledap request URLs must be in the form
https://coastwatch.pfeg.noaa.gov/erddap/tabledap/datasetID.fileType{?query}
For example,
https://coastwatch.pfeg.noaa.gov/erddap/tabledap/pmelTaoDySst.htmlTable?longitude,latitude,time,station,wmo_platform_code,T_25&time>=2015-05-23T12:00:00Z&time<=2015-05-31T12:00:00Z
Thus, the query is often a comma-separated list of desired variable names,
followed by a collection of
constraints (e.g., variable<value),
each preceded by '&' (which is interpreted as "AND").
For details, see the tabledap Documentation.