bcodmo_dataset_997771_v1 eng UTF8 dataset service Adam Shepherd BCO-DMO 508-289-2772 266 Woods Hole Rd. MS#36 Woods Hole MA 02543 USA erddap@bco-dmo.org pointOfContact 2026-05-15 ISO 19115-2 Geographic Information - Metadata Part 2 Extensions for Imagery and Gridded Data ISO 19115-2:2009(E) 2 column row [SCTLD-associated Symbiodiniaceae ITS-2] - NCBI Sequence Read Archive (SRA) accession numbers for raw fastq sequence files of ITS-2 amplicons collected from healthy and SCTLD-affected tissues of nine coral species in Florida, U.S.A. and the U.S. Virgin Islands from 2018-2020 (A multi-scale approach to predicting infectious multi-host disease spread in marine benthic communities) 2026-05-15 creation erddap.bco-dmo.org bcodmo_dataset_997771_v1 BCO-DMO info@bco-dmo.org https://osprey.bco-dmo.org/dataset/997771 information web browser Background Information Background information from the source information originator These data include NCBI Sequence Read Archive (SRA) accession numbers for raw fastq files of internal transcribed spacer-2 (ITS-2) amplicons from 491 apparently healthy and stony coral tissue loss disease (SCTLD)-affected corals in Florida, U.S.A., and the United States Virgin Islands (USVI), representing nine coral species sampled in situ or during an SCTLD transmission experiment. From Florida, 215 samples were collected in situ from six epidemic sites in 2018. From the USVI, 110 samples were collected in situ from four reef sites in 2019-2020. Of the total samples, 325 were sampled in situ as sets of SCTLD-affected and apparently healthy conspecifics: two samples were collected from each diseased coral, one from tissue adjacent to the gross tissue loss lesion and one from apparently healthy tissue on the same coral; one sample was then collected from a nearby conspecific coral that was apparently healthy. The 166 remaining samples were originally collected from Rupert's Rock in the USVI, and samples were taken from these corals during a wet lab-based SCTLD transmission experiment. Understanding whether Symbiodiniaceae composition is predictive of disease state is crucial for managing SCTLD outbreaks, and these data permit investigations of how Symbiodiniaceae lineage-level dynamics may underlie variation in holobiont disease response. Florida samples were collected by Kerry Maxwell, Lindsay Huebner, Dr. Erinn M. Muller, and their teams at the Florida Fish & Wildlife Research Institute and Mote Marine Laboratory. USVI samples were collected by Dr. Marilyn Brandt, Sonora Meiling, Dr. Alex Veglia, Dr. Daniel Holstein, Dr. Laura Mydlarz, Dr. Amy Apprill, Dr. Adrienne Correa, and their teams. Danielle Lasseigne, Adam Glahn, Amanda Long, Bradley Arrington, Daniel Mele, Kathryn Cobleigh, Alexandra Gutting, Joseph Townsend, Naomi Huntley, Kelsey Beavers, Paul Barbera, Nate Berkebile, Tiffany Boisvert, Michael Bollinger, Katy Cummings, Amanda Ellis, Kristine Fisher, John Hart, Lauri Maclaughlin, Brian Reckenbeil, and Jennifer Stein assisted with field collections. BCO-DMO info@bco-dmo.org https://osprey.bco-dmo.org/dataset/997771 information web browser Background Information Background information from the source information pointOfContact earth science atmosphere ocean biosphere biology environment theme BCO-DMO project latitude longitude theme CF The data may be used and redistributed for free but is not intended for legal use, since it may contain inaccuracies. Neither the data Contributor, ERD, NOAA, nor the United States Government, nor any of their employees or contractors, makes any warranty, express or implied, including warranties of merchantability and fitness for a particular purpose, or assumes any legal liability for the accuracy, completeness, or usefulness, of this information. BCO-DMO largerWorkCitation project eng geoscientificInformation 1 -81.4095 -64.89533 18.27925 24.7329 [SCTLD-associated Symbiodiniaceae ITS-2] - NCBI Sequence Read Archive (SRA) accession numbers for raw fastq sequence files of ITS-2 amplicons collected from healthy and SCTLD-affected tissues of nine coral species in Florida, U.S.A. and the U.S. Virgin Islands from 2018-2020 (A multi-scale approach to predicting infectious multi-host disease spread in marine benthic communities) 2026-05-15 creation BCO-DMO info@bco-dmo.org https://osprey.bco-dmo.org/dataset/997771 information web browser Background Information Background information from the source information originator These data include NCBI Sequence Read Archive (SRA) accession numbers for raw fastq files of internal transcribed spacer-2 (ITS-2) amplicons from 491 apparently healthy and stony coral tissue loss disease (SCTLD)-affected corals in Florida, U.S.A., and the United States Virgin Islands (USVI), representing nine coral species sampled in situ or during an SCTLD transmission experiment. From Florida, 215 samples were collected in situ from six epidemic sites in 2018. From the USVI, 110 samples were collected in situ from four reef sites in 2019-2020. Of the total samples, 325 were sampled in situ as sets of SCTLD-affected and apparently healthy conspecifics: two samples were collected from each diseased coral, one from tissue adjacent to the gross tissue loss lesion and one from apparently healthy tissue on the same coral; one sample was then collected from a nearby conspecific coral that was apparently healthy. The 166 remaining samples were originally collected from Rupert's Rock in the USVI, and samples were taken from these corals during a wet lab-based SCTLD transmission experiment. Understanding whether Symbiodiniaceae composition is predictive of disease state is crucial for managing SCTLD outbreaks, and these data permit investigations of how Symbiodiniaceae lineage-level dynamics may underlie variation in holobiont disease response. Florida samples were collected by Kerry Maxwell, Lindsay Huebner, Dr. Erinn M. Muller, and their teams at the Florida Fish & Wildlife Research Institute and Mote Marine Laboratory. USVI samples were collected by Dr. Marilyn Brandt, Sonora Meiling, Dr. Alex Veglia, Dr. Daniel Holstein, Dr. Laura Mydlarz, Dr. Amy Apprill, Dr. Adrienne Correa, and their teams. Danielle Lasseigne, Adam Glahn, Amanda Long, Bradley Arrington, Daniel Mele, Kathryn Cobleigh, Alexandra Gutting, Joseph Townsend, Naomi Huntley, Kelsey Beavers, Paul Barbera, Nate Berkebile, Tiffany Boisvert, Michael Bollinger, Katy Cummings, Amanda Ellis, Kristine Fisher, John Hart, Lauri Maclaughlin, Brian Reckenbeil, and Jennifer Stein assisted with field collections. ERDDAP tabledap 1 -81.4095 -64.89533 18.27925 24.7329 tight ERDDAPtabledapDatasetQueryAndAccess https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_997771_v1 ERDDAP:tabledap ERDDAP-tabledap ERDDAP's tabledap service (a flavor of OPeNDAP) for tabular (sequence) data. Add different extensions (e.g., .html, .graph, .das, .dds) to the base URL for different purposes. download [SCTLD-associated Symbiodiniaceae ITS-2] - NCBI Sequence Read Archive (SRA) accession numbers for raw fastq sequence files of ITS-2 amplicons collected from healthy and SCTLD-affected tissues of nine coral species in Florida, U.S.A. and the U.S. Virgin Islands from 2018-2020 (A multi-scale approach to predicting infectious multi-host disease spread in marine benthic communities) 2026-05-15 creation BCO-DMO info@bco-dmo.org https://osprey.bco-dmo.org/dataset/997771 information web browser Background Information Background information from the source information originator These data include NCBI Sequence Read Archive (SRA) accession numbers for raw fastq files of internal transcribed spacer-2 (ITS-2) amplicons from 491 apparently healthy and stony coral tissue loss disease (SCTLD)-affected corals in Florida, U.S.A., and the United States Virgin Islands (USVI), representing nine coral species sampled in situ or during an SCTLD transmission experiment. From Florida, 215 samples were collected in situ from six epidemic sites in 2018. From the USVI, 110 samples were collected in situ from four reef sites in 2019-2020. Of the total samples, 325 were sampled in situ as sets of SCTLD-affected and apparently healthy conspecifics: two samples were collected from each diseased coral, one from tissue adjacent to the gross tissue loss lesion and one from apparently healthy tissue on the same coral; one sample was then collected from a nearby conspecific coral that was apparently healthy. The 166 remaining samples were originally collected from Rupert's Rock in the USVI, and samples were taken from these corals during a wet lab-based SCTLD transmission experiment. Understanding whether Symbiodiniaceae composition is predictive of disease state is crucial for managing SCTLD outbreaks, and these data permit investigations of how Symbiodiniaceae lineage-level dynamics may underlie variation in holobiont disease response. Florida samples were collected by Kerry Maxwell, Lindsay Huebner, Dr. Erinn M. Muller, and their teams at the Florida Fish & Wildlife Research Institute and Mote Marine Laboratory. USVI samples were collected by Dr. Marilyn Brandt, Sonora Meiling, Dr. Alex Veglia, Dr. Daniel Holstein, Dr. Laura Mydlarz, Dr. Amy Apprill, Dr. Adrienne Correa, and their teams. Danielle Lasseigne, Adam Glahn, Amanda Long, Bradley Arrington, Daniel Mele, Kathryn Cobleigh, Alexandra Gutting, Joseph Townsend, Naomi Huntley, Kelsey Beavers, Paul Barbera, Nate Berkebile, Tiffany Boisvert, Michael Bollinger, Katy Cummings, Amanda Ellis, Kristine Fisher, John Hart, Lauri Maclaughlin, Brian Reckenbeil, and Jennifer Stein assisted with field collections. OPeNDAP 1 -81.4095 -64.89533 18.27925 24.7329 tight OPeNDAPDatasetQueryAndAccess https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_997771_v1 OPeNDAP:OPeNDAP OPeNDAP An OPeNDAP service for tabular (sequence) data. Add different extensions (e.g., .html, .das, .dds) to the base URL for different purposes. download physicalMeasurement sample String Sample coral_id String Coral_id sample_id String Sample_id health String Health host_phylum String Host_phylum host_class String Host_class host_order String Host_order host_family String Host_family host_genus String Host_genus host_species String Host_species susceptibility String Susceptibility location String Location sampletype String Sampletype site String Site year String Year col_health String Col_health figure_sample_id String Figure_sample_id figure_coral_id String Figure_coral_id ncbi_bioproject String Ncbi_bioproject ncbi_biosample String Ncbi_biosample AphiaID int Aphiaid Adam Shepherd BCO-DMO 508-289-2772 266 Woods Hole Rd. MS#36 Woods Hole MA 02543 USA erddap@bco-dmo.org distributor OPeNDAP DAP/2.0 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_997771_v1.html order Data Subset Form ERDDAP's version of the OPeNDAP .html web page for this dataset. Specify a subset of the dataset and download the data via OPeNDAP or in many different file types. download https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_997771_v1.graph order Make-A-Graph Form ERDDAP's Make-A-Graph .html web page for this dataset. Create an image with a map or graph of a subset of the data. mapDigital This record was created from dataset metadata by ERDDAP Version 2.22