Accessing BCO-DMO data
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BCO-DMO ERDDAP
Accessing BCO-DMO data |
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| Dataset Title: | [Population genomics datasets of invasive and native populations of a red seaweed] - Red seaweed Gracilaria vermiculophylla population genomics (SNP genotype likelihoods) from collections of populations in Asia North America and Europe in 2014 and 2015 (Detecting genetic adaptation during marine invasions) 
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| Institution: | BCO-DMO (Dataset ID: bcodmo_dataset_998990_v1) |
| Information: | Summary
| License
| FGDC
| ISO 19115
| Metadata
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Attributes {
s {
Sample_Name {
String long_name "Sample_name";
String units "unitless";
}
SiteName_short {
String long_name "Sitename_short";
String units "unitless";
}
Run {
String long_name "Run";
String units "unitless";
}
BioProject {
String long_name "Bioproject";
String units "unitless";
}
BioSample {
String long_name "Biosample";
String units "unitless";
}
Collection_Date {
Int32 actual_range 2015, 2015;
String long_name "Collection_date";
String units "Year";
}
SiteName_long {
String long_name "Sitename_long";
String units "unitless";
}
geo_loc_name_country {
String long_name "Geo_loc_name_country";
String units "unitless";
}
geo_loc_name_country_continent {
String long_name "Geo_loc_name_country_continent";
String units "unitless";
}
latitude {
String _CoordinateAxisType "Lat";
Float32 actual_range 31.7321, 54.48632;
String axis "Y";
String ioos_category "Location";
String long_name "Latitude";
String standard_name "latitude";
String units "degrees_north";
}
longitude {
String _CoordinateAxisType "Lon";
Float32 actual_range -123.0555, 144.8797;
String axis "X";
String ioos_category "Location";
String long_name "Longitude";
String standard_name "longitude";
String units "degrees_east";
}
}
NC_GLOBAL {
String cdm_data_type "Other";
String Conventions "COARDS, CF-1.6, ACDD-1.3";
String creator_email "info@bco-dmo.org";
String creator_name "BCO-DMO";
String creator_url "https://www.bco-dmo.org/";
String doi "10.26008/1912/bco-dmo.998990.1";
Float64 Easternmost_Easting 144.8797;
Float64 geospatial_lat_max 54.48632;
Float64 geospatial_lat_min 31.7321;
String geospatial_lat_units "degrees_north";
Float64 geospatial_lon_max 144.8797;
Float64 geospatial_lon_min -123.0555;
String geospatial_lon_units "degrees_east";
String history
"2026-06-26T23:42:45Z (local files)
2026-06-26T23:42:45Z https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_998990_v1.html";
String infoUrl "https://osprey.bco-dmo.org/dataset/998990";
String institution "BCO-DMO";
String license
"The data may be used and redistributed for free but is not intended
for legal use, since it may contain inaccuracies. Neither the data
Contributor, ERD, NOAA, nor the United States Government, nor any
of their employees or contractors, makes any warranty, express or
implied, including warranties of merchantability and fitness for a
particular purpose, or assumes any legal liability for the accuracy,
completeness, or usefulness, of this information.";
Float64 Northernmost_Northing 54.48632;
String sourceUrl "(local files)";
Float64 Southernmost_Northing 31.7321;
String summary
"We describe the relative influence of bottlenecks, clonality, and population expansion in determining genomic variability of the widespread red macroalga Gracilaria vermiculophylla. Its introduction from mainland Japan to the estuaries of North America and Europe coincided with shifts from predominantly sexual to partially clonal reproduction and rapid adaptive evolution. We surveyed 62,285 single nucleotide polymorphisms (SNPs) for 351 individuals from 35 populations, aligned to 24 chromosome-length scaffolds that we publish for the first time.
This dataset includes metadata, methods, links to published code and processed data used to generate figures for the results publication Flanagan et al. (2021,doi:10.1111/mec.15854) titled \"Founder effects shape linkage disequilibrium and genomic diversity of a partially clonal invader.\" This dataset also includes genetic accession identifiers for sequence data contributed to the National Center for Biotechnology Information (NCBI)'s Sequence Read Archive (SRA) and Genbank databases, available under BioProject PRJNA700770.";
String title "[Population genomics datasets of invasive and native populations of a red seaweed] - Red seaweed Gracilaria vermiculophylla population genomics (SNP genotype likelihoods) from collections of populations in Asia North America and Europe in 2014 and 2015 (Detecting genetic adaptation during marine invasions)";
Float64 Westernmost_Easting -123.0555;
}
}
Data Access Protocol (DAP) and its
selection constraints.
The URL specifies what you want: the dataset, a description of the graph or the subset of the data, and the file type for the response.
Tabledap request URLs must be in the form
https://coastwatch.pfeg.noaa.gov/erddap/tabledap/datasetID.fileType{?query}
For example,
https://coastwatch.pfeg.noaa.gov/erddap/tabledap/pmelTaoDySst.htmlTable?longitude,latitude,time,station,wmo_platform_code,T_25&time>=2015-05-23T12:00:00Z&time<=2015-05-31T12:00:00Z
Thus, the query is often a comma-separated list of desired variable names,
followed by a collection of
constraints (e.g., variable<value),
each preceded by '&' (which is interpreted as "AND").
For details, see the tabledap Documentation.