[HPLC pigments OC] - Pigments from HPLC analysis of bottle samples collected aboard Oceanus from R/V Oceanus OC404-01, OC404-04, OC415-01, OC415-03 in the Sargasso Sea from 2004-2005 (EDDIES project) (Eddies Dynamics, Mixing, Export, and Species composition)

This dataset includes pigments from HPLC analysis of bottle samples collected
during EDDIES project R/V Oceanus cruises OC404-01, OC404-04, OC415-01 and
OC415-03 from the Sargasso Sea, June 11, 2004 to August 24, 2005.

Methodology: [analytical protocols](\\http://ocb.whoi.edu/EDDIES/PI-
NOTES/HPLC_OC_ALL_notes.html\\)

     Technician: Jason Perl (jperl@chors.sdsu.edu)             Center for Hydro-Optics & Remote Sensing             San Diego State University Research Foundation     Change history: YYMMDD      070525: downloaded original data from EDDIES data Web site              (OC404-1: DM Pigs final 29Jul05.xls);              (OC404-4: 200412c_DM.xls, 200501a_DM.xls, 200504a_DM.xls);              (OC415-1: 200508b_DM-ori.xls, 200509c_DM.xls);              (OC415-3: 200603 DM Final.xls)              prepared for OCB database by Nancy Copley, BCO-DMO      071101: added to OCB database by Cyndy Chandler, BCO-DMO              event number is from cruise event log (added by DMO)      PI note:      080317: Recalibrated data are expected from NASA during the              second half of 2008.

cdm_data_type = Other
VARIABLES:
Cruise_ID (alphanumeric)
event (unitless)
date (unitless)
time2 (Time, hhmm)
longitude (degrees_east)
latitude (degrees_north)
sta (dimensionless)
depth (m)
SID_HPLC (dimensionless)
run_ID_HPLC (alphanumeric)
run_PI (alphanumeric)
vol_filt_ml (milliliters)
... (34 more variables)


[HPLC pigments WB] - HPLC pigments, EDDIES WB cruises from R/V Weatherbird II WB0409, WB0413, WB0506, WB0508 in the Sargasso Sea from 2004-2005 (EDDIES project) (Eddies Dynamics, Mixing, Export, and Species composition)

HPLC pigments, EDDIES WB cruises from R/V Weatherbird II WB0409, WB0413, WB0506, WB0508 in the Sargasso Sea from 2004-2005.

cdm_data_type = Other
VARIABLES:
Cruise_ID (alphanumeric)
event (unitless)
date (unitless)
time2 (Time, unitless)
longitude (degrees_east)
latitude (degrees_north)
sta (dimensionless)
depth (m)
run_ID_HPLC (alphanumeric)
run_PI (alphanumeric)
run_filt_ID (alphanumeric)
vol_filt_ml (milliliters)
chl_a_fluor (Concentration Of Chlorophyll In Sea Water, microgram/liter)
pheo_fluor (microgram/liter)
chlide_a (microgram/liter)
phide (micrograms/liter)
pheo (microgram/liter)
chl_a_allomer (Concentration Of Chlorophyll In Sea Water, microgram/liter)
chl_a (Concentration Of Chlorophyll In Sea Water, microgram/liter)
chl_a_epimer (Concentration Of Chlorophyll In Sea Water, microgram/liter)
chl_c3 (microgram/liter)
chl_c2 (microgram/liter)
peridinin (microgram/liter)
fucox_but (microgram/liter)
fucox (microgram/liter)
fucox_hex (microgram/liter)
... (14 more variables)


[HPLC Pigments] - HPLC pigment analyses of CTD-collected samples from R/V Knorr cruise KN207-03 in the North Atlantic (transect from Ponta Delgada, Azores to Reykjavik, Iceland) in 2012 (NA-VICE project) (Lipid lubrication of oceanic carbon and sulfur biogeochemistry via a host-virus chemical arms race)

Dataset includes HPLC pigment analyses of CTD collected samples from the KN207-03 cruise (Northeast Atlantic Ocean transect from Azores to Iceland).

cdm_data_type = Other
VARIABLES:
cast (alphanumeric)
station (text)
date_gmt (unitless)
time_gmt (unitless)
date_local (unitless)
time_local (unitless)
latitude (degrees_north)
longitude (degrees_east)
lat_deg (Latitude, degrees North)
lat_min (Latitude, minutes North)
lon_deg (Longitude, degrees West)
lon_min (Longitude, minutes West)
time (ISO Date Time UTC, seconds since 1970-01-01T00:00:00Z)
depth (m)
amb_bot (integer)
niskin_sampled (integer)
niskins_fired (range of integers)
filt_vol (liters (L))
pigment (text)
concentration (nanograms per liter (ng/L))


[HPLC Pigments] - HPLC pigment data from samples collected during R/V Savannah cruises conducted in the South Atlantic Bight off the coast of Georgia from 2015-2017 (RUI: Vitamin B12 and nitrogen regulation of oceanic dimethylsulfoniopropionate and dimethylsulfide)

HPLC pigment data collected during several R/V Savannah cruises conducted from 2015 to 2017 along a transect from shelf waters to oligotrophic waters in the South Atlantic Bight off the coast of Georgia (Navy Op Area NA06).

cdm_data_type = Other
VARIABLES:
Cruise_ID (unitless)
Station (unitless)
UTC_Date (unitless)
UTC_Time (unitless)
time (ISO Date Time UTC, seconds since 1970-01-01T00:00:00Z)
latitude (degrees_north)
longitude (degrees_east)
Bottom_Depth (meters (m))
CTD_bottle (unitless)
depth (m)
Chl_c3 (nanograms per liter (ng/L))
Chl_ide (ng/L)
MgDVP (MG DVP, ng/L)
Chl_c2 (ng/L)
Chl_c1 (ng/L)
Peridinin (ng/L)
But_19 (ng/L)
Fuco (ng/L)
Neo (ng/L)
Prasino (ng/L)
Viola (ng/L)
Hex_19 (ng/L)
DD (ng/L)
cis_fuco (ng/L)
Allo (ng/L)
... (13 more variables)


[HPLC_BBRS] - Time series HPLC pigment data as measured by the Bermuda Biological Research Station (BBRS) from B/O Hermano Gines cruises CAR-002 to CAR-030 in the CARIACO basin from 1995-12-13 through 1998-04-21 (CARIACO Ocean Time-Series Program)

The CARIACO Ocean Time-Series Program (formerly known as CArbon Retention In A Colored Ocean) started on November 1995 (CAR-001) and ended on January 2017 (CAR-232). Throughout the CARIACO time-series, High Performance Liquid Chromatography (HPLC) data was analyzed by four different laboratories: Bermuda Biological Research Station; Mote Marine Laboratory; Horn Point Laboratory; and NASA Goddard Space Flight Center. This package contains the data analyzed at the Bermuda Biological Research Station, covering cruises CAR-002 to CAR-030 from 1995-12-13 to 1998-04-21. Some of the parameters analyzed were different along time and along the different laboratories. To keep the continuity of the HPLC time-series analyzed by different laboratories, all the HPLC files have the same units and contain the same number and order of columns/parameters (with \u201cnd\u201d to indicate when a parameter was no determined). Fluorometric Chlorophyll-a and Phaeopigments (measured at Estaci\u00f3n de Investigaciones Marinas de Margarita, Fundaci\u00f3n La Salle, EDIMAR-FLASA) are also included. HPLC was not analyzed for cruises CAR-069 to CAR-123. A general description of the CARIACO Ocean Time-Series Program can be found at www.imars.usf.edu/cariaco.

cdm_data_type = Other
VARIABLES:
Cruise_ID1 (unitless)
Cruise_ID2 (unitless)
Cruise_number (unitless)
leg (unitless)
cast (unitless)
Date (unitless)
Analyzed_by (unitless)
lon_n (Longitude, decimal degrees)
lat_n (Latitude, decimal degrees)
longitude (degrees_east)
latitude (degrees_north)
year (unitless)
month (unitless)
day (unitless)
... (63 more variables)


[HPLC_HPL] - Time series HPLC pigment data as measured by Horn Point Laboratory (HPL) from B/O Hermano Gines cruises CAR-124 to CAR-175 in the CARIACO basin from 2006-07-04 to 2010-12-08 (CARIACO Ocean Time-Series Program)

The CARIACO Ocean Time-Series Program (formerly known as CArbon Retention In A Colored Ocean) started on November 1995 (CAR-001) and ended on January 2017 (CAR-232). Throughout the CARIACO time-series, High Performance Liquid Chromatography (HPLC) data was analyzed by four different laboratories: Bermuda Biological Research Station; Mote Marine Laboratory; Horn Point Laboratory; and NASA Goddard Space Flight Center. This package contains the data analyzed at Horn Point Laboratory, covering cruises CAR-124 to CAR-175 from 2006-07-04 to 2010-12-08. Some of the parameters analyzed were different along time and along the different laboratories. To keep the continuity of the HPLC time-series analyzed by different laboratories, all the HPLC files have the same units and contain the same number and order of columns/parameters (with \u201cnd\u201d to indicate when a parameter was no determined). Fluorometric Chlorophyll-a and Phaeopigments (measured at Estaci\u00f3n de Investigaciones Marinas de Margarita, Fundaci\u00f3n La Salle, EDIMAR-FLASA) are also included. HPLC was not analyzed for cruises CAR-069 to CAR-123. A general description of the CARIACO Ocean Time-Series Program can be found at www.imars.usf.edu/cariaco.

cdm_data_type = Other
VARIABLES:
Cruise_ID1 (unitless)
Cruise_ID2 (unitless)
Cruise_number (unitless)
leg (unitless)
cast (unitless)
Date (unitless)
Analyzed_by (unitless)
lon_n (Longitude, decimal degrees)
lat_n (Latitude, decimal degrees)
longitude (degrees_east)
latitude (degrees_north)
year (unitless)
month (unitless)
day (unitless)
depth_bottom (Depth, meters (m))
... (62 more variables)


[HPLC_MOTE] - Time series HPLC pigment data as measured by MOTE Marine Laboratory & Aquarium from B/O Hermano Gines cruises CAR-031 to CAR-068 in the CARIACO basin from 1998-06-09 to 2001-07-10 (CARIACO Ocean Time-Series Program)

The CARIACO Ocean Time-Series Program (formerly known as CArbon Retention In A Colored Ocean) started on November 1995 (CAR-001) and ended on January 2017 (CAR-232). Throughout the CARIACO time-series, High Performance Liquid Chromatography (HPLC) data was analyzed by four different laboratories: Bermuda Biological Research Station; Mote Marine Laboratory; Horn Point Laboratory; and NASA Goddard Space Flight Center. This package contains the data analyzed at the MOTE Marine Laboratory & Aquarium, covering cruises  CAR-031 to CAR-068 from 1998-06-09 to 2001-07-10. Some of the parameters analyzed were different along time and along the different laboratories. To keep the continuity of the HPLC time-series analyzed by different laboratories, all the HPLC files have the same units and contain the same number and order of columns/parameters (with \u201cnd\u201d to indicate when a parameter was no determined). Fluorometric Chlorophyll-a and Phaeopigments (measured at Estaci\u00f3n de Investigaciones Marinas de Margarita, Fundaci\u00f3n La Salle, EDIMAR-FLASA) are also included. HPLC was not analyzed for cruises CAR-069 to CAR-123. A general description of the CARIACO Ocean Time-Series Program can be found at www.imars.usf.edu/cariaco.

cdm_data_type = Other
VARIABLES:
Cruise_ID1 (unitless)
Cruise_ID2 (unitless)
Cruise_number (unitless)
leg (unitless)
cast (unitless)
Date (unitless)
Analyzed_by (unitless)
lon_n (Longitude, decimal degrees)
lat_n (Latitude, decimal degrees)
longitude (degrees_east)
latitude (degrees_north)
year (unitless)
month (unitless)
day (unitless)
depth_bottom (Depth, meters (m))
... (62 more variables)


[HPLC_NGSFC] - Time series HPLC pigment data as measured by the NASA Goddard Space Flight Center from B/O Hermano Gines cruises CAR-176 to CAR-232 in the CARIACO basin from 2011-01-11 through 2017-01-12 (CARIACO Ocean Time-Series Program)

The CARIACO Ocean Time-Series Program (formerly known as CArbon Retention In A Colored Ocean) started on November 1995 (CAR-001) and ended on January 2017 (CAR-232). Throughout the CARIACO time-series, High Performance Liquid Chromatography (HPLC) data was analyzed by four different laboratories: Bermuda Biological Research Station; Mote Marine Laboratory; Horn Point Laboratory; and NASA Goddard Space Flight Center. This package contains the data analyzed at the NASA Goddard Space Flight Center, covering cruises CAR-176 to CAR-232 from 2011-01-11 to 2017-01-12. Some of the parameters analyzed were different along time and along the different laboratories. To keep the continuity of the HPLC time-series analyzed by different laboratories, all the HPLC files have the same units and contain the same number and order of columns/parameters (with \u201cnd\u201d to indicate when a parameter was no determined). Fluorometric Chlorophyll-a and Phaeopigments (measured at Estaci\u00f3n de Investigaciones Marinas de Margarita, Fundaci\u00f3n La Salle, EDIMAR-FLASA) are also included. HPLC was not analyzed for cruises CAR-069 to CAR-123. A general description of the CARIACO Ocean Time-Series Program can be found at www.imars.usf.edu/cariaco.

cdm_data_type = Other
VARIABLES:
Cruise_ID1 (unitless)
Cruise_ID2 (unitless)
Cruise_number (unitless)
leg (unitless)
cast (unitless)
Date (unitless)
Analyzed_by (unitless)
lon_n (Longitude, decimal degrees)
lat_n (Latitude, decimal degrees)
longitude (degrees_east)
latitude (degrees_north)
year (unitless)
month (unitless)
day (unitless)
depth_bottom (Depth, meters (m))
... (62 more variables)


[HRR 18S full-length sequence BLAST results] - Results of 18S sequencing of full-length 18S rDNA for metabarcoding samples collected during R/V Point Sur cruise PS18-09 in the Western Gulf of Mexico in September 2017 (RAPID: Hurricane Impact on Phytoplankton Community Dynamics and Metabolic Response)

This dataset includes results of 18S sequencing of full-length 18S rDNA for metabarcoding samples collected from surface depth at stations 06, 11, 16, 21, SS, and GI during R/V Pt. Sur cruise PS18-09 Leg 1 using Nanopore minION.

cdm_data_type = Other
VARIABLES:
Station (unitless)
Leg (unitless)
Latitude (degrees_north)
longitude (degrees_east)
Sequence_ID (unitless)
Taxonomy (unitless)
Similarity (percent)
length (base pairs (bp))
mismatches (base pairs (bp))
gaps (unitless)
Q_start (base pairs (bp))
Q_end (base pairs (bp))
R_start (base pairs (bp))
R_end (base pairs (bp))
e_value (unitless)
score (unitless)
file_name_orig (unitless)


[HRR cruise bottle data] - Hydrographic, nutrient and oxygen data from CTD bottles and beam transmission and fluorescence data from CTD profiles during R/V Point Sur PS1809 (HRR legs 1, 2, 3) at the Gulf Mexico, Louisiana and Texas coast, Sept-Oct 2017 (RAPID: Hurricane Impact on Phytoplankton Community Dynamics and Metabolic Response)

Hydrographic, nutrient and oxygen data from CTD bottles and beam transmission and fluorescence data from CTD profiles during R/V Point Sur PS1809 (HRR legs 1, 2, 3) at the Gulf Mexico, Louisiana and Texas coast, Sept-Oct 2017.

cdm_data_type = Other
VARIABLES:
cruise_id (unitless)
leg_name (unitless)
HRR_Leg (unitless)
chf_sci (unitless)
Sta_Sequence (unitless)
Station (unitless)
latitude (degrees_north)
longitude (degrees_east)
Water_Depth (meters)
time (ISO Date Time UTC, seconds since 1970-01-01T00:00:00Z)
Year (unitless)
Month (mm)
Day (dd)
time2 (Time, unitless)
Niskin_Bottle_id (unitless)
depth (Bottle Depth, m)
Nutrient_Bottle_id (unitless)
NO3_umol_L (Mole Concentration Of Nitrate In Sea Water, micromol/liter)
NO3_mg_L_N (milligrams/liter)
HPO4_umol_L (micromol/liter)
HPO4_mg_L_P (milligrams/liter)
HSIO3_umol_L (micromol/liter)
HSIO3_mg_L_SiO3 (HSIO3 Mg L Si O3, milligrams/liter)
NH4_umol_L (Mole Concentration Of Ammonium In Sea Water, micromol/liter)
NH4_mg_L_N (milligrams/liter)
... (24 more variables)


[Hudson Canyon DIC and pH] - Radiocarbon DIC, DIC concentration, pH, and [CH4] in Hudson Canyon, northern US Atlantic Margin collected from R/V Endeavor cruise EN541 in July 2014 (Investigating the chemical and isotopic kinetics of aerobic methane oxidation)

Radiocarbon DIC, DIC concentration, pH, and [CH4] in Hudson Canyon, northern US Atlantic Margin collected from R/V Endeavor cruise EN541 in July 2014.

cdm_data_type = Other
VARIABLES:
Cruise_ID (unitless)
CTD_hex_file (untiless)
Station_ID (unitless)
GMT_Date (unitless)
time (ISO Date Time, seconds since 1970-01-01T00:00:00Z)
GMT_Time (unitless)
latitude (degrees_north)
longitude (degrees_east)
depth (m)
pressure (Digiquartz (db))
temp (Temperature, Degrees Celsius)
sal (Practical (PSU))
Density (kilograms per cubic meter (Kg/m^3))
pH (Sea Water Ph Reported On Total Scale, Unitless; pH scale)
DIC (micromoles per kilogram (umol/kg))
CH3 (nanomolar (nM))
d14C_DIC (D14 C DIC, Per mil (‰))
C14_DIC_age (Years before present)


[Hurricane Harvey Coral Gene Expression] - Coral gene expression Sequence Read Archive (SRA) accession numbers and information for samples collected at the Flower Garden Banks National Marine Sanctuary in the Gulf of Mexico in September and October of 2017 to capture effects of Hurricane Harvey (RAPID: Collaborative Research: Impact of freshwater runoff from Hurricane Harvey on coral reef benthic organisms and associated microbial communities)

To capture the immediate effects of storm-driven freshwater runoff on coral and symbiont physiology, we leveraged the heavy rainfall associated with Hurricane Harvey in late August 2017 by sampling FGB coral gene expression at two time points: September 2017, when surface water salinity was reduced (\u223c34 ppt); and 1 month later when salinity had returned to typical levels (\u223c36 ppt in October 2017). \r\n\r\nThis dataset includes Sequence Read Archive (SRA) and BioSample accessions under BioProject PRJNA552981 at The National Center for Biotechnology Information.  It also contains sample information and species names for samples collected the east and west banks of the Flower Garden Banks National Marine Sanctuary (FGBNMS) at 80ft.\r\n\r\nThese data were published in Wright et al. (2019).

cdm_data_type = Other
VARIABLES:
Sample_Name (unitless)
time2 (Time, unitless)
Bank (unitless)
Buoy (unitless)
latitude (degrees_north)
longitude (degrees_east)
Species (unitless)
depth (m)
SRA (unitless)
Accession (unitless)


[Hurricane Matthew Geochemical Data] - Water geochemistry from surface samples collected along the Neuse River, Neuse River Estuary, and Pamlico Sound in North Carolina between October and December 2016, following the passage of Hurricane Matthew (RAPID: Collaborative Research: Carbon and nutrient responses in an estuarine-coastal complex impacted by floodwaters from Hurricane Matthew)

Water geochemistry from surface samples collected along the Neuse River, Neuse River Estuary, and Pamlico Sound in North Carolina between October and December 2016, following the passage of Hurricane Matthew.

cdm_data_type = Other
VARIABLES:
Sample_ID (unitless)
Site_Location (unitless)
Year (unitless)
Month (unitless)
Day (unitless)
time2 (Time, unitless)
Timezone (unitless)
latitude (degrees_north)
longitude (degrees_east)
Temp (Temperature, Degrees Celsius)
Salinity (Sea Water Practical Salinity, PSU)
GFF_IW (Milligrams (mg))
GFF_FW (Milligrams (mg))
GFF_Diff (Milligrams (mg))
River_Dis (Cubic meters per second (m^3/s))
Spec_Con (Microsiemens per Centimeter (uS/cm))
DO (Milligrams per Liter (mg/L))
DO_Sat (Percentage)
pH (Sea Water Ph Reported On Total Scale, unitless)
TDS (Milligrams per Liter (mg/L))
VF (Milliliters (mL))
TSS (Milligrams per Liter (mg/L))
POC (Particulate Organic Carbon, Micrograms per Liter (ug/L))
PN (Micrograms per Liter (ug/L))
CDOM (Chromophoric Dissolved Organic Material, 1/meters)
... (30 more variables)


[hydrocast Cesium isotopes] - Surface and hydrocast Cesium isotopes 137 and 134 concentrations from the R/V Ka`imikai-O-Kanaloa KOK1108 cruise in June 2011 in the Northwest Pacific Ocean (Fukushima Radionuclide Levels project) (Establishing Radionuclide Levels in the Atlantic and Pacific Oceans Originating from the Fukushima Daiichi Nuclear Power Facility)

Surface and hydrocast Cesium isotopes 137 and 134 concentrations from the R/V Ka`imikai-O-Kanaloa KOK1108 cruise in June 2011 in the Northwest Pacific Ocean.

cdm_data_type = Other
VARIABLES:
sta (dimensionless)
cast (dimensionless)
date (unitless)
time2 (Time, unitless)
date_local (unitless)
time_local (hhmm)
latitude (degrees_north)
longitude (degrees_east)
event (dimensionless)
bot_Nis (dimensionless)
depth (m)
press (decibars)
temp (Temperature, degrees Celsius)
potemp (degrees Celsius)
sigma_0 (kilograms/meter^3)
sal_cal (PSU)
O2_cal (milliliters/liter)
sal_nis (PSU)
O2_nis (milliliters/liter)
Cs137 (Bq/meter^3)
err_Cs137 (Bq/meter^3)
Cs134 (Bq/meter^3)
err_Cs134 (Bq/meter^3)
Cs134_Cs137 (Bq/meter^3)
err_Cs134_Cs137 (Bq/meter^3)
WHOI_Cs_Code (dim)


[Hydrolytic enzyme activity - Coscinodiscus] - Hydrolytic enzyme activities during CDOM monoculture experiment with Coscinodiscus (Collaborative Research: Planktonic Sources of Chromophoric Dissolved Organic Matter in Seawater)

This dataset is from a laboratory experiment. Four phytoplankton cultures and their associated bacterial communities were incubated in replicate roller bottles (1.9 L) over 3-6 weeks under laboratory conditions. Bacterial dynamics in the culture bottles were measured and correlated with geochemical parameters to determine the role of bacterial activities on the formation of CDOM in the cultures (Kinsey et al., 2018, see below).\r\n\r\nThe data include fluorescence and bacterial enzyme activity during CDOM Coscinodiscus monoculture experiments. Growth stages were initial and exponential.

cdm_data_type = Other
VARIABLES:
substrate (unitless)
sample (unitless)
fluor_t0 (relative fluorescence units)
fluor_t1 (relative fluorescence units)
fluor_t2 (relative fluorescence units)
fluor_t3 (relative fluorescence units)
time_t0 (hours)
time_t1 (hours)
time_t2 (hours)
time_t3 (hours)
enz_activity_t0 (nanoMol/hour)
enz_activity_t1 (nanoMol/hour)
enz_activity_t2 (nanoMol/hour)
enz_activity_t3 (nanoMol/hour)
SLOPE (unitless)
RSQR (unitless)


[Hydrolytic enzyme activity - other phytoplankton] - Hydrolytic enzyme activities during CDOM monoculture experiments with Skeletonema, Leptocylindrus, and Phaeocystis (Collaborative Research: Planktonic Sources of Chromophoric Dissolved Organic Matter in Seawater)

This dataset is from a laboratory experiment. Four phytoplankton cultures and their associated bacterial communities were incubated in replicate roller bottles (1.9 L) over 3-6 weeks under laboratory conditions. Bacterial dynamics in the culture bottles were measured and correlated with geochemical parameters to determine the role of bacterial activities on the formation of CDOM in the cultures (Kinsey et al., 2018, see below).\r\n\r\nThe data include fluorescence and bacterial enzyme activity during CDOM monoculture experiments. The phytoplankton cultures were Skeletonema sp., Leptocylindrus sp., and Phaeocystis sp. Growth stages were initial, exponential, stationary, and degradation.

cdm_data_type = Other
VARIABLES:
substrate (unitless)
taxon (unitless)
sample (unitless)
fluor_blank (relative fluorescence units)
fluor_t0 (relative fluorescence units)
fluor_t1 (relative fluorescence units)
fluor_t2 (relative fluorescence units)
fluor_t3 (relative fluorescence units)
fluor_t4 (relative fluorescence units)
fluor_t5 (relative fluorescence units)
fluor_t6 (relative fluorescence units)
fluor_t7 (relative fluorescence units)
fluor_t8 (relative fluorescence units)
enz_activity_blank (nanoMol/hour)
enz_activity_t0 (nanoMol/hour)
enz_activity_t1 (nanoMol/hour)
enz_activity_t2 (nanoMol/hour)
enz_activity_t3 (nanoMol/hour)
enz_activity_t4 (nanoMol/hour)
enz_activity_t5 (nanoMol/hour)
... (5 more variables)


[Hydrothermal Estuaries Noble Gases] - Noble gas concentrations and saturation anomalies from water samples collected on R/V Atlantis cruise AT50-15 in the Juan de Fuca Ridge from August to September 2023 (Collaborative Research: Hydrothermal Estuaries: What Sets the Hydrothermal Flux of Fe and Mn to the Oceans?)

This dataset contains the analytical results from 126 samples collected from the complex hydrothermal plume system overlying, and dispersing away from, the Endeavour segment of the Juan de Fuca Ridge. The samples were collected in August and September 2023 aboard R/V Atlantis cruise AT50-15 and analyzed at WHOI in the isotope geochemistry facility. The samples were collected, primarily, to trace dilution within a hydrothermal plume whose physical dispersion was predicted from theoretical modelling and traced by the AUV Sentry. Multiple tracers were sampled for, from both the Sentry AUV and from vertical casts of the Texas A&M's trace metal clean CTD-rosette, with noble gas samples collected from the CTD-rosette only because of sample volume requirements.  Measurement of these samples for XS3He, in particular, provides a frame of reference against which all other trace element data in the same samples can be normalized to allow for effects that are due to dilution rather than any biogeochemical reactivity.

cdm_data_type = Other
VARIABLES:
Sta (unitless)
time (Cast_start_iso_datetime_utc, seconds since 1970-01-01T00:00:00Z)
Cast_End_ISO_DateTime_UTC (seconds since 1970-01-01T00:00:00Z)
longitude (Long, degrees_east)
latitude (degrees_north)
Cast (unitless)
Bott (unitless)
Press (decibars)
Dup (unitless)
Temp (degrees Celsius)
Salt (PSU)
Theta (kilograms per cubic meter)
He_conc (nM/kg)
Ne_conc (nM/kg)
Ar_conc (uM/kg)
Kr_conc (nM/kg)
Xe_conc (nM/kg)
... (7 more variables)


[Hydrothermal vent microbial and viral metagenomes] - Metagenome sequences from deep-sea hydrothermal vent microbial and viral communities collected at International District hydrothermal field, Axial Seamount during 2019, 2021, 2022, and 2023 (CAREER: Temporal dynamics of microbial and viral function and adaptation in hydrothermal vents)

These data include metagenomes of both viruses and microbes collected during the Ocean Observatories Initiative's Regional Cabled Array (OOI RCA) annual maintenance cruises. Cruises occurred in 2019, 2021, 2022, and 2023. Instruments used included the Particle and Phytoplankton (PPS) DNA sampler deployed at Tiny Towers hydrothermal vent in the International District, as well as the Universal Fluid Obtainer (UFO) fluid sampler mounted aboard ROV Jason. These data assess changes in the microbial and viral community over time at Tiny Towers and at nearby hydrothermal vents, and were collected and processed by Dr. Rika Anderson at Carleton College.

cdm_data_type = Other
VARIABLES:
Accession (unitless)
Sample_Name (unitless)
SPUID (unitless)
Organism (unitless)
Tax_ID (unitless)
BioProject (unitless)
sample_name (unitless)
collection_date (unitless)
collection_time (unitless)
depth (m)
env_broad_scale (unitless)
env_local_scale (unitless)
env_medium (unitless)
geo_loc_name (unitless)
latitude (degrees_north)
longitude (degrees_east)
collection_method (unitless)
temp (degrees Celsius)


[Hydrothermal vent porewater nutrients - TN TC DOC DIC DON] - Sediment TN,TC and porewater DOC, DIC, DON concentrations from pushcore samples collected at Guaymas Basin hydrothermal vents via Alvin dives on RV/Atlantis cruise AT42-05, Nov. 2018 (Collaborative Research: Hydrothermal Fungi in the Guaymas Basin Hydrocarbon Ecosystem)

Porewater nutrient concentrations from pushcore samples collected at two locations in the Guaymas Basin hydrothermal vents region during Alvin dives on RV/Atlantis cruise AT42-05, Nov. 2018. TN, TC, DOC, DIC, and DON concentrations at different depths within the cores are reported.

cdm_data_type = Other
VARIABLES:
Date (unitless)
Site (unitless)
latitude (degrees_north)
longitude (degrees_east)
Dive (unitless)
Sample_ID (unitless)
Total_N_pcent (percent)
Total_C_pcent (percent)
DOC_mg_L (milligrams/liter)
DIC_mg_L (milligrams/liter)
DON_mg_L (milligrams/liter)


[Hydrothermal vent porewater nutrients - WHOI] - Porewater nutrient concentrations (NO3+NO2, NH4, and PO4) from pushcore samples collected at Guaymas Basin hydrothermal vents via Alvin dives on RV/Atlantis cruise AT42-05, Nov. 2018 and reported by Woods Hole Oceanographic Institution (Collaborative Research: Hydrothermal Fungi in the Guaymas Basin Hydrocarbon Ecosystem)

Porewater nutrient concentrations from pushcore samples collected at two locations in the Guaymas Basin hydrothermal vents region during Alvin dives on RV/Atlantis cruise AT42-05, Nov. 2018. NO3+NO2, NH4, and PO4 concentrations at different depths within the cores are reported.

cdm_data_type = Other
VARIABLES:
Date_local (unitless)
Site (unitless)
latitude (degrees_north)
longitude (degrees_east)
Dive (unitless)
Sample_ID (unitless)
NO3_NO2_uM (Mole Concentration Of Nitrate In Sea Water, micromoles/liter (uM))
NH4_uM (Mole Concentration Of Ammonium In Sea Water, micromoles/liter (uM))
PO4_uM (Mass Concentration Of Phosphate In Sea Water, micromoles/liter (uM))


[Hypoxia Tent Experiment 2022] - Sequence accession numbers for 16S rRNA genes characterizing microbiome changes in Agaricia tenuifolia and Siderastrea siderea coral species after being exposed to hypoxia and after a short period of recovery in 2022 experiments (Collaborative Research: Biodiversity and resilience of corals and their microbiomes in response to ocean deoxygenation)

This dataset includes accession numbers and related information for 16S rRNA genes characterizing microbiome changes in Agaricia tenuifolia and Siderastrea siderea coral species after being exposed to hypoxia and after a short period of recovery. Corals for the experiment were collected by SCUBA divers in summer 2022. Sequence data are available in The National Center for Biotechnology Information (NCBI) Sequence Read Archive (SRA) under BioProject accession PRJNA1197146.

cdm_data_type = Other
VARIABLES:
BioProject (unitless)
BioSample (unitless)
sample (unitless)
SRA_Experiment (unitless)
SRA_Run (unitless)
SRA_Study (unitless)
date (unitless)
sample_descrip (unitless)
host (unitless)
site (unitless)
latitude (degrees_north)
longitude (degrees_east)


[I/Ca ratios MAZ-1E-04] - Iodine:calcium ratios in planktic foraminifera in the eastern Pacific through the last deglaciation determined from core MAZ-1E-04 collected on cruise MAZ-I aboard the R/V El Puma in April 2015 (Glacial-Interglacial Changes in Oxygen Minimum Zones Using Deep-Dwelling, Low-Oxygen Planktic Foraminifera)

The structure and drivers of oxygen minimum zone (OMZ) evolution in the Eastern Tropical North Pacific (ETNP) are investigated from ~20.7-10 ka using a multi-proxy approach from core MAZ-1E-04 (22°54.29'N, 106°54.59'W; 1463 m depth). Understanding how OMZ vertical structure changed during past glacial/interglacial cycles will help elucidate the drivers and patterns of OMZ expansion/contraction on longer timescales.

Here, Iodine:Calcium ratios are used from planktic foraminifera N. dutertrei from core MAZ-1E-04 collected on cruise MAZ-I aboard the R/V El Puma in April 2015 to identify periods of low oxygen within the thermocline. Universidad Nacional Autónoma de México financed ship time and M. Alejandro Rodríguez Ramírez directed the oceanographic campaign to retrieve the core.

cdm_data_type = Other
VARIABLES:
Depth_core (centimeter (cm))
Age (years before present (yr BP))
N_dutertrei_count (unitless)
Weight (micrograms)
I_Ca (micromol per mol)


[ice_optics] - Ice optical properties: transmittance and albedo from ARSV Laurence M. Gould LMG0106, LMG0205 in the Southern Ocean from 2001-2002 (SOGLOBEC project) (U.S. GLOBEC Southern Ocean)

Ice optical properties: transmittance and albedo from ARSV Laurence M. Gould LMG0106, LMG0205 in the Southern Ocean from 2001-2002 (SOGLOBEC project).

cdm_data_type = Other
VARIABLES:
cruise_id
year
date_local
month_local
day_local
time_local
yrday_local
event
latitude (degrees_north)
longitude (degrees_east)
ice_thick (centimeters)
freebd (centimeters)
snow_depth (centimeters)
coverage
wavelength (nanometers)
albedo (unitless)
trans
trans45R (Trans45 R, percent)
trans45L (Trans45 L, percent)
trans90R (Trans90 R, percent)
sky_condition
comments


[ice_properties] - Ice core physical properties from ARSV Laurence M. Gould LMG0106 in the Southern Ocean from July 2001 (SOGLOBEC project) (U.S. GLOBEC Southern Ocean)

Ice core physical properties from ARSV Laurence M. Gould LMG0106 in the Southern Ocean from July 2001 (SOGLOBEC project).

cdm_data_type = Other
VARIABLES:
sample_id (unitless)
core_len (centimeters?)
freebrd (?)
depth_cm (Depth, centimeters)
temp (Temperature, degree Celsius)
brine_vol (?)
depth_interval (Depth, centimeters)
sal (PSU?)
d180 (per mil)
crystal_desc (unitless)
station_desc (unitless)
comments (unitless)


[ice_thickness] - Ice thickness transect data from ARSV Laurence M. Gould LMG0106, LMG0205 in the Southern Ocean from 2001-2002 (SOGLOBEC project, Sea Ice Microbes project, Crabeater Seal Foraging project) (U.S. GLOBEC Southern Ocean)

Ice thickness transect data from ARSV Laurence M. Gould LMG0106, LMG0205 in the Southern Ocean from 2001-2002 (SOGLOBEC project, Sea Ice Microbes project, Crabeater Seal Foraging project).

cdm_data_type = Other
VARIABLES:
cruise_id
year
sta_id
sta_name
latitude (degrees_north)
longitude (degrees_east)
lat_end (Latitude, decimal degrees)
lon_end (Longitude, decimal degrees)
date_gmt
month_gmt
day_gmt
yrday_gmt
transect_id
transect_len (meters)
snow_mean (centimeters)
snow_std (centimeters)
snow_min (centimeters)
snow_max (centimeters)
ice_mean (centimeters)
ice_std (centimeters)
ice_min (centimeters)
ice_max (centimeters)
freebd_mean (centimeters)
freebd_std (centimeters)
freebd_min (centimeters)
freebd_max (centimeters)
... (6 more variables)


[Identity and Heights of Octocoral Species] - Identity and heights of Octocoral species found on transects at 6 sites on the south shore of St John, U.S. Virgin Islands in 2021 and 2022 (Collaborative Research: Pattern and process in the abundance and recruitment of Caribbean octocorals)

Transect surveys were conducted at 6 sites on the south shore of St John, within the U.S. Virgin Islands National Park during the summers of 2021 and 2022.  Depending on the site, 3 to 6 transects were established.  Identity and heights of all arborescent octocorals greater than or equal to 5 centimeters were recorded from 1 square meter quadrats on the transects.  The position of colonies relative to the site, meter on the transect, and side of the quadrat are included.   Surveys were conducted by Drs. Howard Lasker and Christopher Wells of the University at Buffalo.

cdm_data_type = Other
VARIABLES:
Census_Year (unitless)
Date (unitless)
latitude (degrees_north)
longitude (degrees_east)
Site (unitless)
Transect_Position (unitless)
Meter_on_transect (meters)
Side_of_transect (unitless)
Meter_Side (unitless)
Genus (unitless)
Species (unitless)
Species_code (unitless)
Total_height (centimeters (cm))
Height_of_living_tissue (centimeters (cm))
Basal_damage (centimeters (cm))
Damage (unitless)
Cyphoma_present (unitless)
Comments (unitless)


[IEF] - Isoelectric focussing electrophoresis of percent activity of radioisotopes and major constituents incubated in natural colloidal organic matter collected from stations E1, E3, C9, C11 (Biopolymers as carrier phases for selected natural radionuclides (of Th, Pa, Pb, Po, Be) in diatoms and coccolithophores)

Isoelectric focussing electrophoresis of percent activity of radioisotopes and major constituents incubated in natural colloidal organic matter collected from stations E1, E3, C9, C11. To study the binding mechanisms of radionuclides to organic moieties in colloidal organic matter (COM),marine colloids (1 kDa\u20130.2 \u03bcm) were isolated by cross-flow ultrafiltration from seawater of the west Pacific Ocean and the northern Gulf of Mexico. For the same purpose, exopolymeric substances (EPS) produced by laboratory cultured diatoms were collected as well. In our study areas, colloidal organic carbon (COC) concentrations ranged from 6.5 to 202 \u03bcg-C/L in the Pacific Ocean, and were 808 \u03bcg-C/L in the Gulf of Mexico. The COM compositions (organic carbon, organic nitrogen, proteins, total hydrolysable amino acids, total polysaccharides, uronic acids, hydroxamate siderophores, hydroquinone) were quantified to examine the relationships between partition coefficients (Kc) of five different radionuclides, 234Th, 233Pa, 210Pb, 210Po and 7Be, and concentration ratios to COC of individual chelating biomolecules that could potentially act as a chelating moiety. The range of partition coefficients (Kc, reported as logKc) of radionuclides between water and the different colloidal materials was 5.12 to 5.85 for 234Th, 5.19 to 6.01 for 233Pa, 4.21 to 4.85 for 210Pb, 4.87 to 5.68 for 210Po, and 4.49 to 4.92 for 7Be, similar to values previously reported for lab and field determinations under different particle concentrations. While any relationship obtained between Kc and abundance of specific moieties could not be taken as proving the existence of colloidal organic binding ligands for the different radionuclides, it could suggest possible organic moieties involved in the scavenging of these natural radionuclides. Together with results from isoelectric focusing of radiolabeled COM, we conclude that binding to different biomolecules is nuclide-specific, with colloidal hydroxamate siderophoric moieties being important for the binding of Th and Pa radionuclides. Hydroquinones/ quinone (HQ/Q) facilitated redox and chelation reactions seem to be involved in the binding of Pa and Be. However, the actual mechanisms are not clear. Individual amino acids, proteins, total polysaccharides and uronic acids did not yield significant relationships with logKc values of the different radionuclides. Nonetheless, our results provide new insights into the relative importance of different potential ligand moieties in COM in the binding and possible scavenging of specific radionuclides in the ocean.

cdm_data_type = Other
VARIABLES:
pH (Sea Water Ph Reported On Total Scale, unitless)
... (30 more variables)


[IEP February and May 2017] - Nutrient and nitrate isotope data from the southern Benguela upwelling system from February to August 2017 (Investigation of mechanisms leading to seasonal hypoxia in the Southern Benguela Upwelling System)

Analysed Particulate Organic Matter data, Nutrient data and Nitrate isotope data from the 2017 Integrated Ecosystem Programme: Southern Benguela (IEP:SB) cruises conducted in February, May, and August 2017. The IEP:SB is a multi-disciplinary, multi-institutional platform to undertake relevant science in the Southern Benguela; also functioning as a platform for collaboration and learning. \r\n\r\nNitrate+nitrite concentrations were measured on a Lachat QuickChem flow injection analysis platform in a configuration with a detection limit of 0.1 \u00b5M, while phosphate and nitrite concentrations were measured using standard benchtop techniques on a Thermo Scientific Genesis 30 Visible spectrophotometer in a configuration with a detection limit of 0.05 \u00b5M. The N and O isotope ratios of the N2O gas were analysed using a Delta V Advantage continuous flow isotope ratio mass spectrometer interfaced with an online N2O extraction and purification system.

cdm_data_type = Other
VARIABLES:
Cruise (unitless)
Month (unitless)
Year (unitless)
Station_ID (unitless)
Monitoring_line (unitless)
latitude (degrees_north)
longitude (degrees_east)
depth (m)
Temperature (degrees Celsius (C))
Salinity (Sea Water Practical Salinity, psu)
Sigma_theta (Sea Water Sigma Theta, kilograms per meter cubed (kg/m3))
NO3_NO2 (Mole Concentration Of Nitrate In Sea Water, microMole (uM))
NO3_NO2_Stdev (Mole Concentration Of Nitrate In Sea Water, micr)
NO2 (Mole Concentration Of Nitrite In Sea Water, microMole (uM))
NO2_Stdev (Mole Concentration Of Nitrite In Sea Water, microMole (uM))
PO43 (microMole (uM))
PO43_Stdev (microMole (uM))
O2 (microMole (uM))
... (5 more variables)


[iioe_mysids] - Counts of Mysidacea species collected during the International Indian Ocean Expeditions (IIOE) aboard multiple cruises in the Indian Ocean from 1962-1965 (IIOE project) (International Indian Ocean Expedition)

Counts of Mysidacea species collected during the International Indian Ocean Expeditions (IIOE) in the Indian Ocean. Mysidacea were collected by several ships that took part in the IIOE from 1962 to 1965. Though collections were taken from all over the Indian Ocean, the bulk of the material comes from the seas around the Indian Peninsula.

cdm_data_type = Other
VARIABLES:
vessel (text)
year (unitless)
cruise (text)
station (unitless)
latitude (degrees_north)
longitude (degrees_east)
date_local (unitless)
month_local (unitless)
day_local (unitless)
time_local (unitless)
day_night_flag (unitless)
depth_w (Depth, meters)
reference (unitless)
ISO_DateTime_Local (ISO Date Time Local, unitless)
species_WoRMS (Species Wo RMS, text)
species_orig (text)
count (unitless)


[Illumina Sequences] - Illumina sequencing data from sediment strata collected from the cold seeps of Hydrate Ridge, metalliferous sediments of Juan de Fuca Ridge, and organic-rich hydrothermal sediments of Guaymas Basin (Collaborative Research: The Role of Iron-oxidizing Bacteria in the Sedimentary Iron Cycle: Ecological, Physiological and Biogeochemical Implications)

Illumina sequencing data (NCBI accession numbers) from sediment strata collected from the cold seeps of Hydrate Ridge, metalliferous sediments of Juan de Fuca Ridge, and organic-rich hydrothermal sediments of Guaymas Basin.

cdm_data_type = Other
VARIABLES:
sequence_accession_number (unitless)
link (unitless)
Species_Names (unitless)
description_of_the_types_of_sequences (unitless)
locations_where_species_were_collected (unitless)
latitude_dms (Latitude, unitless)
longitude_dms (Longitude, unitless)
latitude (degrees_north)
longitude (degrees_east)
Vessel (unitless)
Dive_number (unitless)
sequencing_and_analysis_methods (unitless)
instrument_and_model (unitless)
Analysis_methods (unitless)


[Imaging Pulse Amplitude Modulator Fluorometer 2017] - Imaging pulse amplitude modulator fluorometer data collected from Acropora cervicornis under different pH and temperature treatments from experiments at Summerland Key, Florida from July to September 2017 (CAREER: Applying phenotypic variability to identify resilient Acropora cervicornis genotypes in the Florida Keys)

Imaging pulse amplitude modulator fluorometer data collected from Acropora cervicornis under different pH and temperature treatments from experiments at Summerland Key, Florida  (24.6616,-81.4538) from July to September 2017.

cdm_data_type = Other
VARIABLES:
Tank (unitless)
Genotype (unitless)
pH (unitless)
Temp (Temperature, unitless)
mYield (M Yield, unitless)
mETR (M ETR, umol electrons m–2 s–1)
alpha (change in ETR over increasing values of PAR)


[Imaging Pulse Amplitude Modulator Fluorometer Data 2016] - Imaging pulse amplitude modulator fluorometer data collected during Acropora cervicornis experiments at Summerland Key, Florida from July to September of 2016 (CAREER: Applying phenotypic variability to identify resilient Acropora cervicornis genotypes in the Florida Keys)

This dataset contains Imaging Pulse Amplitude Modulator (IPAM) Fluorometer data collected during various Acropora cervicornis treatment experiments. The data include photosynthetic maximum yield (mY), maximum electron transport rate (mETR), the irradiance at which maximum ETR is reached (mPAR), and the initial slope of the ETR curve (alpha). The experiments were conducted in tanks at Summerland Key, Florida (24.6616,-81.4538) between 2016-07-12 and 2016-09-09 with corals from a nursery located near Looe Key Reef (24.5636, -81.2786).

cdm_data_type = Other
VARIABLES:
Date (unitless)
Genotype (unitless)
Tank (unitless)
mYield (M Yield, unitless but represents the proportion of electrons being used for photosynthesis; potential values range from 0 - 1)
mETR (M ETR, micromoles of electrons per meter per second (umol electrons/m/s))
mPAR (M PAR, micromoles of photons per meter per second (umol photons/m/s))
alpha (micromoles of electrons per meter per second (umol electrons/m/s))


[In situ biogeochemical time-series in Bermuda 2017] - In situ biogeochemical measurements including pCO2, pH, alkalinity, oxygen, temperature and salinity for a time-series in Bermuda, September 2017 (A new tool for ocean carbon cycle and ocean acidification studies)

In situ biogeochemical measurements including pCO2, pH, alkalinity, oxygen, temperature and salinity for a time-series in Bermuda, September 2017.

cdm_data_type = Other
VARIABLES:
time (Date Time UTC, seconds since 1970-01-01T00:00:00Z)
CTD_Sal_7m (unitless)
CTD_Temp_7m (degrees Celsius)
S22_pCO2_surface (S22 P CO2 Surface, micro-atmospheres (uatm))
S22_Temp_surface (degrees Celsius)
S22_DO_surface (micromol/kilogram (umol/kg))
S53_pCO2_7m (S53 P CO2 7m, micro-atmospheres (uatm))
S53_Temp_7m (degrees Celsius)
S53_DO_7m (micromol/kilogram (umol/kg))
S13_pH_7m (S13 P H 7M, unitless; pH scale)
S13_Temp_7m (degrees Celsius)
SA03_Date_UTC (unitless)
SA03_Alkalinity_7m (micromol/kilogram (umol/kg))
SA03_Temp_7m (degrees Celsius)
Benchtop_Date_UTC (unitless)
Benchtop_Alkalinity (micromol/kilogram (umol/kg))


[In situ dissolved oxygen] - In situ dissolved oxygen of experimental chambers and ambient sensors acquired in the shallow subtidal shore-accessible site in Bon Secour Bay, Mobile Bay, Alabama, USA between August 7-12, 2021 (CAREER: Mechanisms of bioturbation and ecosystem engineering by benthic infauna)

This dataset is part of a field study examining the effect of diel oxygen cycling on faunal activity, and in turn sediment oxygen demand. The field experiment used in situ flow-through benthic chambers to measure oxygen consumption, as described in the methods paper Gadeken et al 2023. The chambers were deployed and retrieved in three ~24 hour deployments in a shallow subtidal area of Bon Secour Bay in Mobile Bay, AL, in August 2021. This dataset contains streamlined data from the HOBO dissolved oxygen (DO) loggers and the log time of when the chamber system flushes the overlying water in the chamber and starts a new incubation.

cdm_data_type = Other
VARIABLES:
latitude (degrees_north)
longitude (degrees_east)
date_time (unitless)
DO (mg L-1)
temperature (Degrees Fahrenheit)
Deployment (unitless)
Chamber_Ambient (unitless)


[In situ pCO2 manipulation experiments 2010-2011] - Rates of primary and bacterial production measured in situ under ambient and elevated pCO2 (750 µatm) from the Hawaiian Ocean Time Series near Station ALOHA from 2010-2011. (Oceanic diazotroph community structure and activities in a high carbon dioxide world)

Rates of primary and bacterial production measured in situ under ambient and elevated pCO2 (750 \u00b5atm) from the Hawaiian Ocean Time Series near Station ALOHA from 2010-2011.

cdm_data_type = Other
VARIABLES:
cruise_id (no units)
station (text)
cast (unitless)
date (unitless)
year (unitless)
month (unitless)
day (unitless)
time2 (Time, unitless)
latitude (degrees_north)
longitude (degrees_east)
depth (m)
PP_mean_10um (micromol C/liter/day)
PP_std_dev_10um (micromol C/liter/day)
PP_num_obs_10um (unitless)
PP_mean_750uatm_pco2_10um (micromol C/liter/day)
PP_std_dev_750uatm_pco2_10um (micromol C/liter/day)
PP_num_obs_750uatm_pco2_10um (unitless)
PP_mean_2um (micromol C/liter/day)
PP_std_dev_2um (micromol C/liter/day)
PP_num_obs_2um (unitless)
PP_mean_750uatm_pco2_2um (micromol C/liter/day)
PP_std_dev_750uatm_pco2_2um (micromol C/liter/day)
PP_num_obs_750uatm_pco2_2um (unitless)
PP_mean_0pt2um (micromol C/liter/day)
PP_std_dev_0pt2um (micromol C/liter/day)
PP_num_obs_0pt2um (unitless)
... (20 more variables)


[In situ prokaryotic and viral abundance] - In situ prokaryotic and viral abundance from hydrothermal vent site Tica samples from R/V Falkor (too) cruise FKt230629, East Pacific Rise in July of 2023 (The Underworld of Hydrothermal Vents)

The dataset contains data on in situ prokaryotic and viral abundance as sampled during the R/V Falkor (too) cruise FKt230629 in July of 2023.  Samples were collected using a suction-sampler operated onboard the remotely-operated vehicle (ROV) SuBastian at the hydrothermal vent site Tica.

cdm_data_type = Other
VARIABLES:
subsample_id (unitless)
habitat (unitless)
latitude (degrees_north)
longitude (degrees_east)
date (unitless)
time_local (Time, unitless)
time (Iso_datetime_utc, seconds since 1970-01-01T00:00:00Z)
depth (m)
prokaryotes (10000 prokaryotic cells per milliliter (10^4 mL^-1))
viruses (10000 viruses per milliliter (10^4 mL^-1))


[In situ seawater temperature at Heron Island (2015-2020)] - Measurements of seawater temperature, depth, and photosynthetically active radiation (PAR) across seven sites at Heron Island, southern Great Barrier Reef from 2015 to 2020 (Influence of environmental pH variability and thermal sensitivity on the resilience of reef-building corals to acidification stress)

Increasing ocean temperatures threaten coral reefs globally, but corals residing in habitats that experience high thermal variability are thought to be better adapted to survive climate-induced heat stress. Here, we used long-term ecological observations and in situ temperature data from Heron Island, southern Great Barrier Reef to investigate how temperature dynamics within various thermally variable vs. thermally stable reef habitats change during a marine heatwave and the resulting consequences for coral community survival. This data set includes the in-field measurements of seawater temperature, depth, and photosynthetically active radiation (PAR) across seven sites at Heron Island, southern Great Barrier Reef.

cdm_data_type = Other
VARIABLES:
ISO_DateTime_AEST (unitless)
time (Iso_datetime_utc, seconds since 1970-01-01T00:00:00Z)
Site (unitless)
Latitude (degrees_north)
longitude (degrees_east)
Date_AEST (unitless)
depth (m)
PAR (micromoles quanta per square meter per second (umol quanta m-2 s-1))
Temperature (degrees Celsius)


[In situ sediment characteristics] - In situ sediment characteristics acquired in the shallow subtidal shore-accessible site in Bon Secour Bay, Mobile Bay, Alabama, USA between August 7-12, 2021 (CAREER: Mechanisms of bioturbation and ecosystem engineering by benthic infauna)

This dataset is part of a field study examining the effect of diel oxygen cycling on faunal activity, and in turn sediment oxygen demand. The field experiment used in situ flow-through benthic chambers to measure oxygen consumption, as described in the methods paper Gadeken et al 2023. The chambers were deployed and retrieved in three ~24 hour deployments in a shallow subtidal area of Bon Secour Bay in Mobile Bay, AL, in August 2021. This dataset contains sediment characteristic information from three cores taken within 10m of the deployment location.

cdm_data_type = Other
VARIABLES:
Sampling_Date (unitless)
latitude (degrees_north)
longitude (degrees_east)
Core (unitless)
Section (centimeter (cm))
depth (m)
tin_ID (unitless)
Salinity (unitless)
tin_weight (gram (gr))
tin_wet (gram (gr))
tin_dry (gram (gr))
tin_burned (gram (gr))
wc_percent (percent (%) weight)
porosity (percent (%) volume)
loi_percent (percent (%) weight)


[In situ sediment oxygen demand and infauna] - Processed dissolved oxygen and infauna of experimental chambers and ambient sensors acquired in the shallow subtidal shore-accessible site in Bon Secour Bay, Mobile Bay, Alabama, USA between August 7-12, 2021 (CAREER: Mechanisms of bioturbation and ecosystem engineering by benthic infauna)

This data set includes data and scripts from a field study examining the effect of diel oxygen cycling on faunal activity, and in turn sediment oxygen demand. The field experiment used in situ flow-through benthic chambers to measure oxygen consumption, as described in the methods paper Gadeken et al 2023 in L&O:Methods. The chambers were deployed and retrieved in three ~24 hour deployments in a shallow subtidal area of Bon Secour Bay in Mobile Bay, AL, in August 2021. Included in this data set are the raw data files of oxygen and temperature measurements from Onset HOBO DO loggers integrated into the benthic chamber system, annotated MATLAB scripts and workspaces detailing data processing and analysis, and faunal community data from the benthic chambers.

cdm_data_type = Other
VARIABLES:
latitude (degrees_north)
longitude (degrees_east)
StartTime (unitless)
dayfrac (unitless)
Chamber (unitless)
SOD (millimoles per square meter per day (mmol m-2 d-1))
InitialDO (milligrams per liter (mg L-1))
biomass (grams (g))
deployment (unitless)
sample (unitless)


[In-field temperature data Kane'ohe Bay] - In-field temperature data Kane'ohe Bay, O'ahu, Hawai'i from 2013 to 2023 (RAPID: Collaborative Research: Disentangling the effects of heat stress versus bleaching phenotype on coral performance)

Increasingly frequent marine heatwaves are devastating coral reefs. Corals that survive these extreme events must rapidly recover if they are to withstand subsequent events, and long-term survival in the face of rising ocean temperatures may hinge on recovery capacity and acclimatory gains in heat tolerance over an individual's lifespan. To better understand coral recovery trajectories in the face of successive marine heatwaves, we monitored the responses of bleaching-susceptible and bleaching-resistant individuals of two dominant coral species in Hawaiʻi, Montipora capitata and Porites compressa, over a decade that included three marine heatwaves. This dataset includes the in situ temperature data from Kāne'ohe Bay, O'ahu, Hawai'i from 2013-2023.

cdm_data_type = Other
VARIABLES:
time (Iso_datetime_utc, seconds since 1970-01-01T00:00:00Z)
Temperature (degrees C)
Date (unitless)
time_local (Time, unitless)
Site (unitless)
hour (unitless)
year (unitless)
day (unitless)
month (unitless)


[In-situ pump chemical data] - Chemical analyses of size-fractionated particle samples collected during the BIOS-SCOPE cruise AE1819 in the Sargasso Sea in July 2018 (Bermuda Institute of Ocean Sciences Simons Collaboration on Ocean Processes and Ecology)

Included in this dataset are chemical analyses of size-fractionated particle samples collected during BIOS-SCOPE project cruises in the Sargasso Sea starting in 2018. Samples were collected using McLane WTS-LV in-situ pumps and analyzed for phytol concentration, bulk particulate organic carbon (POC), stable carbon isotope composition, and nitrogen and carbon isotope composition of amino acids.

cdm_data_type = Other
VARIABLES:
Sample (unitless)
Cruise (unitless)
Date (unitless)
Latitude (degrees_north)
longitude (degrees_east)
size_fraction_um (micrometers (um))
split_type (unitless)
depth (Depth_m, m)
total_phytol_from_chlorophyll_concentration_ng_L (nanograms per liter (ng/L))
phytol_concentration_sd_ng_L (nanograms per liter (ng/L))
d13C_phytol_corrected_value_per_mil (per mil)
d13C_phytol_sd_per_mil (per mil)
d13C_POC_per_mil (per mil)
d13C_POC_sd_per_mil (per mil)
POC_concentration_ug_L (micrograms per liter (ug/L))
d13C_THAA_per_mil (per mil)
d13C_THAA_sd_per_mil (per mil)
TP_from_d15N_AA (unitless)
TP_sd (unitless)


[In-situ pump data] - TPC, PIC, POC, TPN, and Th-234 from in-situ pumps at the Porcupine Abyssal Plain Sustained Observatory (PAP-SO) site in the Northeast Atlantic Ocean during RRS Discovery cruise DY077 in April of 2017 (Collaborative Research:   Are all traps created equal?  A multi-method assessment of the collection and detection of sinking particles in the ocean)

TPC, PIC, POC, TPN, and Th-234 from in-situ pumps at the Porcupine Abyssal Plain Sustained Observatory (PAP-SO) site in the Northeast Atlantic Ocean during RRS Discovery cruise DY077 in April of 2017.

cdm_data_type = Other
VARIABLES:
deployment (unitless)
station (unitless)
depth (m)
pore_size (micrometers (um))
latitude (degrees_north)
longitude (degrees_east)
date_start (unitless)
time_start (unitless)
time (ISO Date Time Start, seconds since 1970-01-01T00:00:00Z)
date_end (unitless)
time_end (unitless)
volume (liters (L))
TPN (micromoles per liter (umol/L))
TPN_err (micromoles per liter (umol/L))
TPC (micromoles per liter (umol/L))
TPC_err (micromoles per liter (umol/L))
PIC (Particulate Inorganic Carbon, micrograms per liter (ug/L))
PIC_err (micrograms per liter (ug/L))
POC (Particulate Organic Carbon, micromoles per liter (umol/L))
POC_err (micromoles per liter (umol/L))
Th234_part (disintegration per minute per liter (dpm/L))
Th234_part_err (disintegration per minute per liter (dpm/L))


[Incubation data for Mytilus californianus calcification] - Incubation data for Mytilus californianus calcification from January to April 2022 (OA decoupling project) (Invertebrate calcification and behavior in seawater of decoupled carbonate chemistry)

Calcification is vital to marine organisms that produce calcium carbonate shells and skeletons. However, how calcification is impacted by ongoing environmental changes, including ocean acidification, remains incompletely understood due to complex relationships among the carbonate system variables hypothesized to drive calcification.

Here, we experimentally decouple these drivers in an exploration of shell formation in adult marine mussels, Mytilus californianus. In contrast to models that focus on single parameters like calcium carbonate saturation state, our results implicate two independent factors, bicarbonate concentration and seawater pH, in governing calcification. While qualitatively similar to ideas embodied in the related substrate-inhibitor ratio (bicarbonate divided by hydrogen ion concentration), our data highlight that merging bicarbonate ion and hydrogen ion concentrations into a simple quotient obscures important features of calcification. Considering a dual-parameter framework improves mechanistic understanding of how calcifiers interact with complex and changing chemical conditions.

cdm_data_type = Other
VARIABLES:
species (unitless)
AphiaID (unitless)
LSID (unitless)
module (unitless)
date_local (unitless)
start_datetime_local (unitless)
ISO_Start_DateTime_UTC (unitless)
duration (hours)
salinity (PSU)
temperature (degrees Celcius (c))
calcification (umol hr^-1 g^-0.71592)
tissue_mass (grams (g))
shell_mass (grams (g))
wet_mass (grams (g))
... (24 more variables)


[Incubation Data] - Coral physiological and biological data collected during acute exposures in static incubation chambers in Hawaii from June 2023 to January 2025 (Collaborative Research: Reevaluating calcification response to changes in seawater chemistry by testing the Proton Flux Hypothesis and the Coral Metabolism Model)

This dataset contains carbonate chemistry, physiological response, and incubation measurements from controlled static incubations of two Hawaiian coral species, Montipora capitata (branching and plating morphologies, urn:lsid:marinespecies.org:taxname:287697) and Pocillopora acuta (urn:lsid:marinespecies.org:taxname:759099). Corals were exposed to a series of experimental seawater chemistry treatments designed to independently manipulate proton concentration and carbonate ion availability through adjustments to total alkalinity and dissolved inorganic carbon. Treatments spanned ambient conditions as well as elevated and reduced total alkalinity, elevated and reduced pH, and combinations of altered pH and alkalinity. For each treatment, seawater parameters were measured, including temperature, salinity, dissolved oxygen, pH on the total scale, total alkalinity, bicarbonate, carbonate ion concentration, pCO2, dissolved inorganic carbon, and aragonite saturation state. Coral incubations were conducted under static conditions to quantify changes in carbonate chemistry associated with coral metabolic activity and to assess species- and morphology-specific calcification responses across distinct carbonate system states. This dataset supports the evaluation of the Proton Flux Hypothesis and Coral Metabolism Model by providing detailed carbonate chemistry conditions and coral responses across a spectrum of experimentally generated seawater states.

cdm_data_type = Other
VARIABLES:
date (unitless)
species (unitless)
treatment (unitless)
condition (unitless)
genotype (unitless)
time_elapsed (Time, hours)
temp (degrees Celsius (degC))
do_mg_l (milligrams per liter (mg/L))
sal (parts per thousand (ppt))
ph_nbs (NBS scale)
ph_mv (millivolts (mV))
bwt (grams (g))
... (7 more variables)


[Incubation Data] - Vascular plant and microbial biomarkers of dissolved organic matter data from incubation experiments (Collaborative Research:   Calibration and application of vascular plant and aqueous microbial biomarkers to examine transformations of dissolved organic matter)

Incubation experiments were conducted in the dark or using a dark/light cycle. Incubations conducted in the dark alone are classified as \microbial, and incubations using a dark/light cycle are classified as \coupled\.

cdm_data_type = Other
VARIABLES:
incubation_type (unitless)
site_type (unitless)
time_point (unitless)
days (days)
hours (hours)
Exposure (hours)
Dose (MJ/m2)
Irradiance (W/m2)
DOC_mg_L (mg/L)
DOC_mM (DOC M M, mM)
Fuc (nanomoles per liter (nmol/L))
Rha (nanomoles per liter (nmol/L))
Ara (nanomoles per liter (nmol/L))
Gal (nanomoles per liter (nmol/L))
Glu (nanomoles per liter (nmol/L))
Man (nanomoles per liter (nmol/L))
Xyl (nanomoles per liter (nmol/L))
D_Asx (nanomoles per liter (nmol/L))
L_Asx (nanomoles per liter (nmol/L))
D_Glx (nanomoles per liter (nmol/L))
L_Glx (nanomoles per liter (nmol/L))
D_Ser (nanomoles per liter (nmol/L))
L_Ser (nanomoles per liter (nmol/L))
D_His (nanomoles per liter (nmol/L))
L_His (nanomoles per liter (nmol/L))
... (69 more variables)


[Incubation in diffuse flow vent fluids - Crab Spa] - Results from shipboard high-pressure incubations of diffuse flow vent fluids collected from the Crab Spa and Alvinella sites at East Pacific Rise during the AT26-10 expedition, Jan. 2014 (Microbial Communities at Deep-Sea Vents project) (An Integrated Study of Energy Metabolism, Carbon Fixation, and Colonization Mechanisms in Chemosynthetic Microbial Communities at Deep-Sea Vents)

This dataset includes results from shipboard high-pressure incubations of
diffuse flow vent fluids collected from the Crab Spa (9.8398\u00ba N,
104.2913\u00ba W) and Alvinella (9.8398\u00ba N, 104.2915\u00ba W) sites at
East Pacific Rise during the AT26-10 oceanographic expedition in January 2014.
Reported parameters include dates and time elapsed, flow rate, temperature,
pressure, and pH, and concentrations of NO3, NH4, H2, H2S, CH4.

Vent fluids used in shipboard incubations were corrected from diffuse flow
vent sites at the East Pacific Rise (2503 m): Crab Spa (9.8398\u00ba N,
104.2913\u00ba W) and Alvinella (9.8398\u00ba N, 104.2915\u00ba W) (see
description in McNichol et al. [2016]). Fluids were collected using isobaric
gas-tight samplers [Seewald et al., 2002] prior to their transfer to the
shipboard continuous culture system [Foustoukos and Perez-Rodriguez, 2015].
Here, high-pressure incubations (250 bars) were conducted at mesophilic (30
\u00baC) and thermophilic (50 \u00baC) conditions to constrain the function
and metabolic rates of denitrifying and DNRA microbial communities residing at
Crab Spa and Alvinella, respectively. To enhance the activity of nitrate-
respiring anaerobic bacteria, an NO3- (5 mm) and H2(aq) (1.30 mM)-enriched
medium was introduced in the high-pressure incubations under strictly
anaerobic conditions. Dissolved HCO3- (7.3 mm, 13C labeled) was used as added
carbon source. Vent fluids were introduced at a flow rate of 0.042 mL/min,
while growth medium was added at a rate of 0.0042 mL/min. The two sets of
experiments were performed for 356 (Crab Spa) and 50 hours (Alvinella). Direct
cell counts were conducted by staining cells with 0.1% acridine orange and
counting them with a fluorescence microscope. 15N/14N isotopic analysis of the
NO3-, NH4+ and biomass were conducted with a Thermo Scientific Delta VPlus
mass spectrometer and CE Instruments NA 2500 series elemental analyzer (EA).

References:

Foustoukos, D., and I. Perez-Rodriguez (2015), A continuous culture system for
assessing microbial activities in the piezosphere, Applied and Environmental
Microbiology, 81(19), 6850-6856.

McNichol, J., S. P. Sylva, F. Thomas, C. D. Taylor, S. M. Sievert, and J. S.
Seewald (2016), Assessing microbial processes in deep-sea hydrothermal systems
by incubation at in situ temperature and pressure, Deep Sea Research Part I:
Oceanographic Research Papers, 115, 221-232.

Seewald, J. S., K. W. Doherty, T. R. Hammar, and S. P. Liberatore (2002), A
new gas-tight isobaric sampler for hydrothermal fluids, Deep-Sea Research,
Part I: Oceanographic Research Papers, 49(1), 189-196.

cdm_data_type = Other
VARIABLES:
description (unitless)
... (15 more variables)


[Incubations: cell abundance, carbon fixation rates, nitrates] - Microbial cell abundance,carbon fixation rates, and nitrate concentrations during shipboard incubations of vent fluids at the diffuse-flow vent Crab Spa, East Pacific Rise on RV/Atlantis cruise AT37-12, May 2017 (Collaborative Research: Environmental Drivers of Chemoautotrophic Carbon Production at Deep-Sea Hydrothermal Vents - Comparative Roles of Oxygen and Nitrate)

Microbial cell abundance, carbon fixation rates, and nitrate concentrations during shipboard incubations of vent fluids at the diffuse-flow vent Crab Spa, East Pacific Rise in the Eastern Tropical North Pacific (ETNP) on RV/Atlantis cruise AT37-12, May 2017.

cdm_data_type = Other
VARIABLES:
incubation (unitless)
time_elapsed (hours)
cell_abund (cells/milliliter)
carbon_fix (microgram Carbon/liter/day)
NOX (micromol/liter)


[Indian Ocean Sediment Traps] - Indian Ocean Sediment Trap Data collected from R/V Roger Revelle Cruise RR2201 in the Eastern Indian Ocean (Argo Basin) during February 2022 (BLOOFINZ-IO project) (Collaborative Research: Mesoscale variability in nitrogen sources and food-web dynamics supporting larval southern bluefin tuna in the eastern Indian Ocean)

The dataset contains sediment trap data collected from the R/V Roger Revelle during cruise RR2201 in the Eastern Indian Ocean (Argo Basin) from February 2022. The data, part of the BLOOFINZ-IO project, includes measurements of particulate organic carbon, nitrogen flux, carbon and nitrogen isotopes, chlorophyll a, and phaeopigment flux. The sediment traps were deployed using VERTEX-style surface-tethered systems, with samples processed for isotope analysis and other biochemical analyses.

cdm_data_type = Other
VARIABLES:
Cruise (unitless)
Cycle (unitless)
depth (m)
Date_Deployed (unitless)
Date_Recovered (unitless)
Duration (days)
Deployment_Latitude (degrees_north)
longitude (Deployment_longitude, degrees_east)
latitude (Recovery_latitude, degrees_north)
Recovery_Longitude (degrees_east)
Corg (mg C m-2 d-1)
sigma_Corg (mg C m-2 d-1)
Norg (mg N m-2 d-1)
sigma_Norg (mg N m-2 d-1)
d13C (units)
sigma_d13C (units)
d15N (units)
sigma_d15N (units)
Chl (mg Chl a m-2 d-1)
sigma_Chl (mg Chl a m-2 d-1)
Phaeo (mg Chl a equivalents m-2 d-1)
sigma_Phaeo (m-2 d-1)


[Infauna abundance and biomass] - In situ infauna abundance and biomass of experimental sediment chambers acquired in the shallow subtidal shore-accessible site in Bon Secour Bay, Mobile Bay, Alabama, USA between August 7-12, 2021 (CAREER: Mechanisms of bioturbation and ecosystem engineering by benthic infauna)

This dataset is part of a field study examining the effect of diel oxygen cycling on faunal activity, and in turn sediment oxygen demand. The field experiment used in situ flow-through benthic chambers to measure oxygen consumption. The chambers were deployed and retrieved in three ~24 hour deployments in a shallow subtidal area of Bon Secour Bay in Mobile Bay, AL, in August 2021. This dataset contains the abundances of all macrofaunal taxa as well as the total biomass and the biomass of some major taxa found in each of the chambers. The Abunance data have not been normalized to meters squared. The biomass values have been normalized to meters squared from the values taken from the chambers, which occupy a smaller area.

cdm_data_type = Other
VARIABLES:
Sampling_Date (unitless)
latitude (degrees_north)
longitude (degrees_east)
Sample_ID (unitless)
JuvenileCrab (individuals per chamber)
Shrimp (individuals per chamber)
Amphipoda (individuals per chamber)
Corophiidae (individuals per chamber)
Ampeliscidae (individuals per chamber)
Tanaidaceae (individuals per chamber)
Capitellidae (individuals per chamber)
Nereididae (individuals per chamber)
Spionidae (individuals per chamber)
Phyllodocidae (individuals per chamber)
Orbiniidae (individuals per chamber)
Tellinidae (individuals per chamber)
Mactridae (individuals per chamber)
Echiura (individuals per chamber)
Microdesmidae (individuals per chamber)
Abundance (individuals)
... (9 more variables)


[Infauna and sediment property data collected off the Alabama coast before and after Hurricane Sally (2020-2021)] - Infaunal community composition and sediment grain size distribution, porosity, and organic content of sediment cores collected in the Northern Gulf of Mexico off the Alabama (USA) coast during 2020 and 2021 before and after Hurricane Sally (CAREER: Mechanisms of bioturbation and ecosystem engineering by benthic infauna)

This dataset consists of infaunal community composition and sediment grain size distribution, porosity, and organic content of sediment cores in addition to bottom water salinity, dissolved oxygen, and temperature collected from 9 sites at 5, 12 and 20 meters depth in the Northern Gulf of Mexico off the Alabama (USA) coast before and after Hurricane Sally, which occurred in 2020.

cdm_data_type = Other
VARIABLES:
Site (unitless)
latitude (degrees_north)
longitude (degrees_east)
WaterDepth_m (meters (m))
Date (unitless)
TimeAfterSally_d (days)
Rep (unitless)
Actiniaria (indivduals per core)
Nemertea (indivduals per core)
Platyhelminthes (indivduals per core)
Aspidosiphonidae (indivduals per core)
Golfingiidae (indivduals per core)
Thalassematidae (indivduals per core)
Ampharetidae (indivduals per core)
Acoetidae (indivduals per core)
Amphinomidae (indivduals per core)
Capitellidae (indivduals per core)
Cirratulidae (indivduals per core)
Cossuridae (indivduals per core)
Eulepethidae (indivduals per core)
Eunicidae (indivduals per core)
Flabelligeridae (indivduals per core)
Glyceridae (indivduals per core)
Goniadidae (indivduals per core)
... (115 more variables)


[Inferno vent plume proteins-Av1] - Proteins identified from the black smoker chimney Inferno hydrothermal vent plume meta-proteome - replicate Av1 - on the Axial seamount off the coast of Washington in 2011. (Mixotrophic bacteria and the cryptic marine sulfur cycle: Mechanisms of carbon assimilation and sulfur oxidation in the Arctic96BD-19 GSO clade)

Proteins identified in the Inferno hydrothermal vent plume meta-proteome
(replicate Av1).\u00a0 Only proteins identified by peptides with a protein
probability >0.9 are listed.\u00a0

These data are reported as Supplementary Table 3 and discussed in [Mattes et
al., 2013](\\http://dmoserv3.bco-
dmo.org/data_docs/SulfurOxidizers/Mattes_2013_PlumeProt.pdf\\).
(doi:10.1038/ismej.2013.113)

The FASTA information in the data was expanded to include the metadata when
those FASTA headers were linked to GenBank.\u00a0

Proteins that were identified in biological replicate Av2 that were not
identified in biological replicate Av1. (GSO: Gamma Sulfur Oxidizer)

 \u00a0

\u00a0

\u00a0

\u00a0

\u00a0

\Although fewer proteins were identified in Av2, nearly all (94%) of the
proteins identified in Av2 were also identified in Av1.\u00a0 Differences in
the total number of proteins identified in replicate samples may result from
differences in the amount of biomass obtained during sample processing.\

DMO notes:
 Put multiple FASTA entries on separate lines
 Split out one number in FASTA header for linking
 Left it sorted by Total Independent Spectra column
 Added linkage column
 Removed commas in 'consensus annotation' column (signals database to put in
new column)
 Reordered columns to put KEGG last -- much longer than any other column

cdm_data_type = Other
VARIABLES:
entry (number)
... (10 more variables)


[Initial behavior of lionfish at different prey densities] - Initial lionfish behaviors at different densities of local lionfish and prey fish on reefs in Eleuthera, Bahamas during 2012 (Mechanisms and Consequences of Fish Biodiversity Loss on Atlantic Coral Reefs Caused by Invasive Pacific Lionfish)

Initial lionfish behaviors at different densities of local lionfish and prey fish on reefs in Eleuthera, Bahamas during 2012

cdm_data_type = Other
VARIABLES:
time_period (unitless)
behavior (unitless)
date (unitless)
reef (unitless)
PTVO_size (centimeters)
specific_location (unitless)
location_code (unitless)


[Initial predator preferences] - Initial hunting preferences by predator species in the Bahamas in 2013 (Mechanisms and Consequences of Fish Biodiversity Loss on Atlantic Coral Reefs Caused by Invasive Pacific Lionfish)

Initial hunting preferences by predator species in the Bahamas in 2013

cdm_data_type = Other
VARIABLES:
predator_ID (unitless)
predator_species (unitless)
predator_size (centimeters)
bass_treatment (unitless)
first_size (unitless)
first_species (unitless)


[Initial spores] - Pterosiphonia bipinnata and Corallina vancouveriensis initial experiment attachment and duration at Deadman Bay on San Juan Island, Washington (Effects of Ocean Acidification on Coastal Organisms: An Ecomaterials Perspective)

Pterosiphonia bipinnata and Corallina vancouveriensis initial experiment attachment and duration at Deadman Bay on San Juan Island, Washington

cdm_data_type = Other
VARIABLES:
time2 (Time, hours)
Attached (unitless)
Treatment (unitless)
latitude (degrees_north)
longitude (degrees_east)
location (unitless)
Species (unitless)


[inorganic nutrients] - Inorganic nutrients (PO4, SiOH4, NO3, NO2, NH4) from R/V Knorr cruise KN207-01 from the southern tip of Nova Scotia to Bermuda in 2012 (SargassoSeaLipids project) (Biogeochemical Impact and Fate of Non-phosphorus Membrane Lipids in the Sargasso Sea)

Inorganic nutrients (PO4, SiOH4, NO3, NO2, NH4) from R/V Knorr cruise KN207-01 from the southern tip of Nova Scotia to Bermuda in 2012.

cdm_data_type = Other
VARIABLES:
cast (integer)
month_cast (mm (01 to 12))
day_cast (dd (01 to 31))
year (unitless)
latitude (degrees_north)
longitude (degrees_east)
depth (m)
PO4 (Mass Concentration Of Phosphate In Sea Water, uM)
SiOH4 (Si OH4, uM)
NO3 (Mole Concentration Of Nitrate In Sea Water, uM)
NO2 (Mole Concentration Of Nitrite In Sea Water, uM)
NH4 (Mole Concentration Of Ammonium In Sea Water, uM)


[Input data and code (CovGE)] - Input data and code to test hypotheses between genetic and environmental effects on phenotypes (RCN: Evolution in Changing Seas)

The purpose of this study was to apply a quantitative measure to phenotypic data that were collected by other studies to test hypotheses about natural prevalence and patterns of Covariance between genotypic and environmental effects on phenotypes (CovGE).

cdm_data_type = Other
VARIABLES:
Study_ID_phenotype (unitless)
First_Author (unitless)
gen_factor (unitless)
nat_env_factor (unitless)
exp_env_factor (unitless)
phen_n (unitless)
phen_data (unitless)
phen_SD (unitless)
phen_mean_SE (unitless)
phen_mean_lowCI_095 (unitless)
phen_mean_highCI_095 (unitless)
Source (unitless)


[inshore_catch] - Maine/New Hampshire Inshore Trawl Survey: Catch Data from the F/V Robert Michael,F/V Tara Lynn NEC-JS2000-1 from the the Maine and New Hampshire coasts, 2000-2004 (NEC-CoopRes project) (Northeast Consortium: Cooperative Research)

Maine/New Hampshire Inshore Trawl Survey: Catch Data from the F/V Robert Michael,F/V Tara Lynn NEC-JS2000-1 from the the Maine and New Hampshire coasts, 2000-2004 (NEC-CoopRes project)

cdm_data_type = Other
VARIABLES:
year
season
region
towid
latitude (degrees_north)
longitude (degrees_east)
depth_fm (Depth)
grid
depth_strata (Depth)
fishid
taxa
weight_kg_total
num_caught
common_name


[inshore_trawl stations] - Maine/New Hampshire Inshore Trawl Survey: station information from the F/V Robert Michael,F/V Tara Lynn NEC-JS2000-1 from the the Maine and New Hampshire coasts, 2000-2004 (NEC-CoopRes project) (Northeast Consortium: Cooperative Research)

Maine/New Hampshire Inshore Trawl Survey: station information from the F/V Robert Michael,F/V Tara Lynn NEC-JS2000-1 from the the Maine and New Hampshire coasts, 2000-2004 (NEC-CoopRes project)

cdm_data_type = Other
VARIABLES:
year
time (Date Local, seconds since 1970-01-01T00:00:00Z)
region
towid
longitude (degrees_east)
latitude (degrees_north)
grid
se_flag
depth_strata (Depth)
time_local (hhmm)
duration (minutes)
depth_fm (Depth, fathoms)
temp (Temperature, degrees C)
sal (parts/thousand)
yrday_local (unitless)


[Integrated Acoustic Scattering BIP] - Nautical Area Scattering Coefficients (NASC) from an R/V BIP cruise in the Guaymas Basin, Gulf of California in 2013 (Jumbo Squid El Nino Response project) (Adaptable life history strategy of a migratory large predator in response to El Nino and climate change)

Integrated, area scattering values, or Natuical Area Scattering Coefficients (NASC) are provided from one cruise in the Guaymas Basin that occurred October 2013. Also included are the time (UTC) and location at the start and end of each integration bin, mean depth of the exclusion line for each bin, and the average thickness of the integrated cell.\r\n\r\nNote that noise removal from this data set (e.g. splash down, electrical interference, and CTD casts) was minimal before integration. Raw acoustic scattering data (.raw files) are extremely large. These are archived at Oregon State University and will be shared using physical media upon request.

cdm_data_type = Other
VARIABLES:
date_start (unitless)
time_start (HHMM.mmmm)
date_end (unitless)
time_end (HHMM.mmmm)
NASC (m2 nmi-2)
latitude (degrees_north)
longitude (degrees_east)
lat_end (Latitude, decimal degrees)
lon_end (Longitude, decimal degrees)
exclusion_line_mean_depth (meters)
integration_layer_thickness_mean (meters)


[Integrated Acoustic Scattering NH] - Nautical Area Scattering Coefficients (NASC) from R/V New Horizon cruises NH1106 and NH1006 in the Guaymas Basin in 2010 and 2011 (Jumbo Squid Physiology project) (Hypoxia and the ecology, behavior and physiology of jumbo squid, Dosidicus gigas)

Integrated, area scattering values, or Natuical Area Scattering Coefficients (NASC) are provided from two cruises in the Guaymas Basin that occurred in June 2010 and June 2011. Also included are the time (UTC) and location at the start and end of each integration bin, mean depth of the exclusion line for each bin, and the average thickness of the integrated cell.\r\n\r\nRaw acoustic scattering data (.raw files) are extremely large. These are archived at Oregon State University and will be shared using physical media upon request.

cdm_data_type = Other
VARIABLES:
cruise_id (text)
cruise_start_date (unitless)
cruise_end_date (unitless)
date_start (unitless)
time_start (HHMM.mmmm)
date_end (unitless)
time_end (HHMM.mmmm)
NASC (m2 nmi-2)
latitude (degrees_north)
longitude (degrees_east)
lat_end (Latitude, decimal degrees)
lon_end (Longitude, decimal degrees)
exclusion_line_mean_depth (meters)
integration_layer_thickness_mean (meters)


[Integrated Energy Density data of Marine and Freshwater Organisms] - Marine and Freshwater Energy Density Data Integrated and Organized by Taxonomy from Previous Research Sources (1961 through June 2024) Discovered by a Literature Review (Nutritional ecology of climate change: Impacts on Northwest Atlantic fishes)

Energy is the currency of exchange within ecosystems which defines the strength and influence of interactions, particularly between predator and prey. The ability to estimate the productivity of an ecosystem is, therefore, dependent upon the estimation of consumer diet contents and their energetic quality. To estimate growth, reproduction, and, ultimately, survival of individuals, measures of prey quality for predators are essential both at the individual level and for scaling to ecosystem-wide fluxes and pools. Among measures of prey quality, energy density (kiloJoules per gram; kJ/g) is the most used in ecology. Considerable efforts have established estimates of energy densities for many aquatic taxa. However, a database of aquatic organism energetics constructed by integrating and organizing across multiple sources spawning marine and freshwater habitats across the globe is needed to add both depth (more samples to measure within-taxa variation) and breadth (more taxa). To generate a comprehensive energy density database of aquatic organisms, we performed a multifaceted review to find sources from the peer-reviewed and grey literature with a broad search on Web of Science, from citations of related literature, and a haphazard recommendation from experts. Estimates of energy density of whole organism live weights (kJ/g wet weight) were prioritized to better relate to diet and energetics studies. When energy density was only provided per gram dry weight, the dry weight and percentage water was used to calculate energy density per gram wet weight. Sub-organism (i.e. tissue specific) energy density estimates are included (e.g. muscle, liver, egg) when only these were reported. A total of 3810 records are included from 134 sources, covering 2016 unique taxa, of which 1771 (87.76%) are identified at the species level. Species or taxa-specific energy densities ranged from 0.015 to 17.949 kJ/g wet weight (WW) with a mean ± SD = 4.509 ± 1.94 kJ/g WW and median = 4.225 kJ/g WW. Among those phyla with more than three species (n phyla = 9), chordates (n taxa = 1283) had the highest average energy density (mean ± SD; 4.92 ± 1.90; 0.162 – 17.9 kJ/g WW) and ctenophores (n taxa = 4) had the lowest average (0.0988 ± 0.074; 0.03 to 0.205 kJ/g WW). Each record includes the organism taxonomy to the lowest resolution listed in the original source, energetic data available from the source including body composition and energy density data, number of replicates and methodology for measuring energetics information--primarily split between bomb calorimetry and proximate composition--as well as the source's author(s), year, and publication. Additional meta-data are included whenever possible based on details from the original source including the 1) environmental features: area, method, and timing of capture; 2) methodological features: storage method, storage duration, and tissue type measured; and 3) organismal features: weight, length, and sex; as well as any additional notes about the source. This comprehensive database integrates those data discoverable by our search and which met inclusion criteria identified above in a taxonomic and spatial organization framework to facilitate modeling trophic interactions, bioenergetics, growth, productivity, and energy fluxes through marine and freshwater ecosystems.

cdm_data_type = Other
VARIABLES:
Phylum (unitless)
... (41 more variables)


[Integrative taxonomy of tectractinellid sponges] - Morphological and genetic data of tetractinellid sponges from Kāne'ohe Bay, Hawai'i based on specimens collected between 2016 and 2023 (Testing the most striking tropical marine biodiversity gradient on the planet: does it hold for sponges?)

Here we integrate molecular phylogeny and systematics to distinguish introduced species from those that are potentially native or endemic. We focus on the order Tetractinellida and document the transoceanic dispersal of Geodia papyracea from the Caribbean to Hawai'i, likely via the fouling of ship hauls navigating through the Panama Canal. Our integrative approach allowed us to describe new species of Stelletta, Stelletta kaluhiwa sp. nov., Stelletta cypheri sp. nov., Stelletta camvela sp. nov., Stelletta hewetta sp. nov., Stelletta brighti sp. nov., and one new species of Stryphnus, Stryphnus jonesi sp. nov; all collected from the reef cryptofauna. Specimens were barcoded using 28S and COI molecular markers, providing insights into the phenotypic plasticity of sponges and the phylogenetic placement of these new species based on morphological characters. Using both molecular phylogeny and traditional taxonomy enhances the accuracy of species identification and classification, contributing to a broader understanding of sponge biodiversity within the Hawaiian archipelago.

cdm_data_type = Other
VARIABLES:
Species (unitless)
Type (unitless)
FMNH (unitless)
BPBM_cat_no (unitless)
Field_code (unitless)
COI_Genbank_acc_no (unitless)
Genbank_acc_no_28S (unitless)
Date (unitless)
latitude (degrees_north)
longitude (Long, degrees_east)
Anatrienes_rhabdome_LXW (micrometers)
Anatrienes_cladome_diameter (micrometers)
Orthotriaenes_Rhabdome_LXW (micrometers)
Orthotriaenes_cladome_diameter (micrometers)
Plagiotriaenes_Rhabdome_LXW (micrometers)
Plagiotrienes_cladome_diameter (micrometers)
... (13 more variables)


[integrity_tests] - Test of integrity of dissolved 15N2 gas samples stored in Exetainer vials (EAGER:  Collaborative Research:  Detection limit in marine nitrogen fixation measurements - Constraints of rates from the mesopelagic ocean)

We monitored the 15N2 gas atom% values of prepared solutions stored in Exetainer vials (filled with no headspace) in order to verify that these values remained stable over a period of weeks to months of storage. The integrity of samples was preserved for at least 6 months.

cdm_data_type = Other
VARIABLES:
Trial (unitless)
Sample_ID (unitless)
Date_of_analysis (unitless)
Days_of_storage (days)
Avg_15N_at_pcnt (Avg 15 N At Pcnt, unitless)
stdev_at_pcnt (unitless)
Notes (unitless)


[Intertidal community: California and Baja California] - Intertidal community diversity surveys at 23 sites in California, USA and Baja California, Mexico across tidal elevations from 2022-2023 (Predicting impacts of coastal species redistribution in a changing climate)

This dataset includes information on over 100 species found in the intertidal zone on a rocky shoreline during community surveys conducted at 23 sites along the coast of California and Baja California, Mexico in 2022 and 2023. Community survey data includes visual estimates of percent area covered by various species with corresponding season and tide height.

cdm_data_type = Other
VARIABLES:
Region (unitless)
Site (unitless)
latitude (degrees_north)
longitude (Long, degrees_east)
Survey_Date (unitless)
Season (unitless)
Vert_Transect_Dist (meters (m))
Quad_Dist (meters (m))
TH_Transect_Top (meters (m))
Quad_TH (meters (m))
Pct_Pool (percent (%))
Bare_Space (percent (%))
Organism_parameter (unitless)
Organism (unitless)
Coverage (percent (%))


[Invasive lionfish density dependence - Growth Persistence] - Experimental results on density dependent loss and growth in invasive red lionfish sampled at Lee Stocking Island, Bahamas in 2011 (Mechanisms and Consequences of Fish Biodiversity Loss on Atlantic Coral Reefs Caused by Invasive Pacific Lionfish)

Experimental results on density dependent loss and growth in invasive red lionfish sampled at Lee Stocking Island, Bahamas in 2011

cdm_data_type = Other
VARIABLES:
presence (unitless)
lionfish_id (unitless)
reef_number (unitless)
lionfish_density_initial (count per square meter)
lionfish_density_mean (count per square meter)
tag (unitless)
date (unitless)
total_length (centimeters)
mass (grams)


[Invasive lionfish density dependence - Recruitment and Immigration] - Experimental results on density dependent recruitment and immigration in invasive red lionfish sampled at Lee Stocking Island, Bahamas in 2011 (Mechanisms and Consequences of Fish Biodiversity Loss on Atlantic Coral Reefs Caused by Invasive Pacific Lionfish)

Experimental results on density dependent recruitment and immigration in invasive red lionfish sampled at Lee Stocking Island, Bahamas in 2011

cdm_data_type = Other
VARIABLES:
date (unitless)
reef (unitless)
lionfish_density_mean (count per square meter)
lionfish_size (centimeters)
notes (unitless)


[Invertebrate Data] - Invertebrate data from fish and seagrass surveys on clusters of artificial reefs at the Abaco Islands, Bahamas in 2021 and 2022 (Using novel ecosystem-scale experiments to quantify drivers of reef productivity in a heavily impacted coastal ecosystem)

Invertebrate data from fish and seagrass surveys on clusters of artificial reefs at the Abaco Islands, Bahamas in May of 2022. Data are presented for site PN, which was constructed in May 2021 at the Bight of Old Robinson, Great Abaco. At the site three clusters of nine reefs were constructed. Each cluster was separated by at least 150 m and were constructed at ~3 m depth.

cdm_data_type = Other
VARIABLES:
Observer (unitless)
Date (unitless)
time_local (Time, unitless)
Assembly_day (unitless)
Cluster (unitless)
cluster_lat (degrees_north)
longitude (Cluster_lon, degrees_east)
Reef (unitless)
Species (unitless)
Count (unitless)
Legal (unitless)
Not_legal (unitless)
Notes (unitless)
time (Iso_datetime_utc, seconds since 1970-01-01T00:00:00Z)


[Invertebrate Species Counts] - Counts of organisms recorded during emergent and rapid emergent surveys conducted in the subtidal zone of northern California, Sonoma and Mendocino counties, from 1999 to 2023 (Collaborative Research: The effects of marine heatwaves on reproduction, larval transport and recruitment in sea urchin metapopulations)

The Kelp Forest Monitoring data record span surveys across 24 years from 1999 through 2023 at 20 locations on the Sonoma-Mendocino Coast, Northern California. Years without data, inclusive: 2002, 2020, 2021. These surveys are ongoing and are conducted by the California Department of Fish and Wildlife dive team with participation from dive program partners at UC Davis, UC Santa Cruz, Cal Poly Humboldt, Sonoma State, and other dive programs and volunteers. Not all sites were surveyed in all years. Surveys prior to 2000 were not conducted by the same teams or with the same methods except that all surveys were done using Scuba along 30 x 2 meter (m) transects randomly placed in the subtidal zone in rocky habitats dominated by bull kelp, Nereocystis luetkeana, forests. These randomly placed band transects surveys were stratified by depth (A=0-15, B=16-30, C=31-45, D=46-60 ft) as we know sea urchin and abalone populations differ by depth.

Data collected include the number of live, dying (in some years during the mass mortality events), and dead sea urchins (red-Mesocentrotus franciscanus and purple-Strongylocentrotus purpuratus), red abalone (Haliotis rufescens), pinto abalone (H. kamtschatkana), flat abalone (H. walallensis), as well as empty abalone shells (again in some years). Additional data collected (if Scuba bottom time and/or air allowed): red abalone size, numbers or presence of associated species such as sea stars and predators, algal group quantification, and presence of bull kelp, substrate type. Data on algae and associated species differed depending on the year and the focus of the studies in response to ecosystem conditions but all years quantified sea urchins and abalones.

These data provide a baseline of biological conditions in the kelp forest before, during and after the major marine heatwave of 2014-2016 in northern California. These data were used to manage the recreational red abalone fishery by the California Department of Fish and Wildlife from 2002 to the closure of the fishery in 2018. These data are from the two counties Sonoma and Mendocino County that had 95% of the bull kelp forests in northern California.

cdm_data_type = Other
VARIABLES:
SurveyNum (unitless)
DFW_short_code (unitless)
SiteName (unitless)
... (18 more variables)


[Invertebrate stable isotopes from Alaskan seeps (May-June 2024)] - C and N stable isotope data for invertebrates collected by HOV Alvin during R/V Atlantis cruise AT50-24 at Sanak Seep Alaska from May 16 to June 5, 2024 (Collaborative Research: Redefining the footprint of deep ocean methane seepage for benthic ecosystems)

This dataset provides C and N stable isotope data for invertebrates collected by HOV Alvin in May-June 2024 during R/V Atlantis cruise AT50-24 at methane seeps on the Aleutian margin off Alaska. There are also POM data for surface and near-bottom water samples collected by CTD. δ13C and δ15N measurements were made on 0.2-4 mg dry-weight samples combusted using an elemental analyzer interfaced to a continuous flow isotope ratio mass spectrometer at the Stable Isotope Facility at the University of California, Davis (SIF-UCD).

cdm_data_type = Other
VARIABLES:
Type (unitless)
Date (unitless)
Alvin_Dive (unitless)
Site (unitless)
depth (m)
latitude (degrees_north)
longitude (degrees_east)
Navigation_Comment (unitless)
Sample (unitless)
Sample_ID (unitless)
Habitat (unitless)
Phylum (unitless)
Taxon_ID (unitless)
AphiaID (unitless)
Accepted_names (unitless)
Incubation_treatment (unitless)
d13C (‰ (per mil))
d15N (‰ (per mil))


[Invertebrate stable isotopes from Southern California seeps (July 2023)] - Invertebrate stable isotopes from samples collected at methane seeps off Southern California with the HOV Alvin from July 16-28, 2023 during R/V Atlantis cruise AT50-12 (Collaborative Research: Redefining the footprint of deep ocean methane seepage for benthic ecosystems)

This dataset provides C and N stable isotope data for invertebrates collected by HOV Alvin from July 16-28, 2023 at methane seeps in Southern California during R/V Atlantis cruise AT50-12. There are also POC data for one surface and one near bottom water sample collected by CTD. δ13C and δ15N measurements were made on 0.2-4 mg dry-weight samples combusted using an elemental analyzer interfaced to a continuous flow isotope ratio mass spectrometer at the Stable Isotope Facility at the University of California, Davis (SIF-UCD).

cdm_data_type = Other
VARIABLES:
Date (unitless)
Alvin_Dive (unitless)
Site (unitless)
latitude (degrees_north)
longitude (degrees_east)
Depth (meters (m))
Sample_number (unitless)
Habitat (unitless)
Sample_type (unitless)
Analysis_context (unitless)
Phylum (unitless)
Taxon_ID (unitless)
Incubation (unitless)
C13 (per mil (0/00))
N15 (per mil (0/00))
Remarks (unitless)


[Invertebrate Survival] - Invertebrate survival: Invertebrate survival rates from feeding experiments, conducted at Bodega Marine Laboratory, where food sources (eelgrass (Zostera marina) genotypes) were varied (Connecting genetic diversity to ecosystem functioning: links between genetic diversity, relatedness and trait variation in a seagrass community)

Seagrass meadows are among the world's most productive ecosystems, and as in many other systems, genetic diversity is correlated with increased production. However, only a small fraction of seagrass production is directly consumed, and instead much of the secondary production is fueled by the detrital food web. Here, we study the roles of plant genetic diversity and grazer species diversity on detrital consumption in California eelgrass Zostera marina meadows. We used three common mesograzers\u2014an amphipod, Ampithoe lacertosa, an isopod, Idotea resecata, and a polychaete, Platynereis bicanaliculata. In this experiment, we raised communities of either Ampithoe lacertosa or communities of all three mesograzers on either no food, eelgrass detritus from a single clone, or eelgrass detritus from 3 of from 6 different clones. Under monospecific grazer assemblages, plant genetic identity but not diversity influenced detritus consumption. However, more realistic, diverse mesoconsumer communities combined with high plant-detrital genotypic diversity resulted in greater consumption and grazer survival. These data are illustrated in figure 6 of Reynolds et al., 2017 (DOI:10.1111/oik.04471).

cdm_data_type = Other
VARIABLES:
Days_after_exp_setup (unitless)
Detrital_genotypes_present (unitless)
Treatment (unitless)
Invertebrate_survival_pcnt (unitless (percent))


[IODP-347 drill site locations] - Drill site locations from MPSV GREATSHIP MANISHA IODP-347 cruise in the Baltic Sea in 2013 (IODP-347 Microbial Quantification project) (Quantifying the contribution of the deep biosphere in the marine sediment carbon cycle using deep-sea sediment cores from the Baltic Sea)

IODP-347 Drill Sites

Data for sites downloaded from:
[http://iodp.pangaea.de/front_content.php?idcat=587](\\http://iodp.pangaea.de/front_content.php?idcat=587\\)

Note: Drill site locations used for deployment locations table

[IODP-347 Expedition
Summary](\\http://dmoserv3.whoi.edu/data_docs/IODP_347/Expedition_347_101_Summary.pdf\\)

cdm_data_type = Other
VARIABLES:
Site (text)
Date (unitless)
latitude (degrees_north)
longitude (degrees_east)
depth (m)


[IODP360 - Annotations] - Supplementary Table 4B: Annotations for contigs within transcriptome libraries for the eleven samples that were manually curated for selected metabolic processes (Collaborative Research: Delineating The Microbial Diversity and Cross-domain Interactions in The Uncharted Subseafloor Lower Crust Using Meta-omics and Culturing Approaches)

Supplementary Table 4B: Metatranscriptome data summary for cellular activities presented and statistics on sequencing and removal of potential contaminant sequences: Annotations for contigs within transcriptome libraries for the eleven samples that were manually curated for selected metabolic processes. Samples  taken on board of the R/V JOIDES Resolution between November 30, 2015 and January 30, 2016.

cdm_data_type = Other
VARIABLES:
Cycle (unitless)
Biosynthetic_pathway (unitless)
ID_2R1 (ID 2 R1, unitless)
ID_19R1 (ID 19 R1, unitless)
ID_26R2 (ID 26 R2, unitless)
ID_31R1 (ID 31 R1, unitless)
ID_42R2 (ID 42 R2, unitless)
ID_51R3 (ID 51 R3, unitless)
ID_62R1 (ID 62 R1, unitless)
ID_68R4 (ID 68 R4, unitless)
ID_71R1 (ID 71 R1, unitless)
ID_81R2 (ID 81 R2, unitless)
ID_84R6 (ID 84 R6, unitless)


[IODP360 - Archaeal and bacterial lipid biomarkers] - Supplementary Table 3A: Concentration of archaeal and bacterial lipid biomarkers, ratio of core vs intact polar lipids and average chain length of bacterial dietherglycerol lipids. (Collaborative Research: Delineating The Microbial Diversity and Cross-domain Interactions in The Uncharted Subseafloor Lower Crust Using Meta-omics and Culturing Approaches)

Overview of archaeal and bacterial lipid biomarkers and cell counts. Concentration of archaeal and bacterial lipid biomarkers, ratio of core vs intact polar lipids and average chain length of bacterial dietherglycerol lipids. Samples  taken on board of the R/V JOIDES Resolution between November 30, 2015 and January 30, 2016

cdm_data_type = Other
VARIABLES:
Sample (unitless)
latitude (degrees_north)
longitude (degrees_east)
depth (m)
Intact_polar_lipids_1G_2GGDGT (Intact Polar Lipids 1 G 2 GGDGT, picograms per gram (pg/g))
Intact_polar_lipids_1G_2GAR (Intact Polar Lipids 1 G 2 GAR, picograms per gram (pg/g))
Core_lipids_core_GDGT (picograms per gram (pg/g))
Core_lipids_core_archaeol (picograms per gram (pg/g))
Core_lipids_bacterial_diether_glyerol_lipids (picograms per gram (pg/g))
G_GDGTs_core_GDGT (picograms per gram (pg/g))
GARs_core_ARs (picograms per gram (pg/g))
Archaea_IPLcore (picograms per gram (pg/g))
Bacteria_average_chain_length (picograms per gram (pg/g))


[IODP360 - CHNS analyses] - Supplementary Table 1: Results of CHNS analyses in rock samples at different depths and sample images. (Collaborative Research: Delineating The Microbial Diversity and Cross-domain Interactions in The Uncharted Subseafloor Lower Crust Using Meta-omics and Culturing Approaches)

Results of CHNS analyses in rock samples at different depths and sample images taken on board of the R/V JOIDES Resolution between November 30, 2015 and January 30, 2016

cdm_data_type = Other
VARIABLES:
Sample_ID (unitless)
depth (m)
TOC (percentage (%))
TON (percentage (%))
Total_C_Total_N (percentage (%))
Ratio_13C_12C (Ratio 13 C 12 C, percentage (%))
Clay_OH (percentage (%))
Observations (unitless)
Reference_Picture (unitless)
latitude (degrees_north)
longitude (degrees_east)