[ciliate abundance and biomass] - Abundance and biomass of ciliates from inverted microscope counts from samples taken on R/V Atlantic Explorer cruises AE1102, AE1118, AE1206, AE1219 in the Sargasso Sea, Bermuda Atlantic Time-Series Station in 2011-2012 (Trophic BATS project) (Plankton Community Composition and Trophic Interactions as Modifiers of Carbon Export in the Sargasso Sea 	)

Abundance and biomass of ciliates from inverted microscope counts from samples taken on R/V Atlantic Explorer cruises AE1102, AE1118, AE1206, AE1219 in the Sargasso Sea, Bermuda Atlantic Time-Series Station in 2011-2012.

cdm_data_type = Other
VARIABLES:
cruise_id (dimensionless)
cast (dimensionless)
station (dimensionless)
location_description (dimensionless)
latitude (degrees_north)
longitude (degrees_east)
depth (m)
total_biomass (nanograms C per Liter)
taxon (dimensionless)
abundance (cells per Liter)
abund_upper_95pcnt_CI (cells per Liter)
abund_lower_95pcnt_CI (cells per Liter)
biomass (nanograms C per Liter)


[Clam Outplants] - Clam outplant experiments conducted in Seadrift and Bolinas Lagoon for 2015 (RAPID: A rare opportunity to examine overcompensation resulting from intensive harvest of an introduced predator)

Clam outplants in Seadrift and Bolinas Lagoons (Central California coast, shallow subtidal (<2 m depth)) for 2015.

cdm_data_type = Other
VARIABLES:
lagoon (unitless)
site (unitless)
latitude (degrees_north)
longitude (degrees_east)
date (unitless)
species_code (unitless)
species (unitless)
size (millimeters (mm))
outcome_code (unitless)
outcome (unitless)


[Clear Lake 800-yr reconstruction] - Record of d2H of dinosterol variability in down core lake sediments from Clear Lake, Palau (Do Parallel Patterns Arise from Parallel Processes?)

Record of d2H of dinosterol variability in down core lake sediments from Clear Lake, Palau.

cdm_data_type = Other
VARIABLES:
location (unitless)
latitude (degrees_north)
longitude (degrees_east)
core_depth (centimeters (cm))
age (unitless)
dDdino (D Ddino, per mil)
dDdino_stdev (D Ddino Stdev, per mil)


[CliOMZ AT50-10 AUV Clio Data: Clio Dive Log] - Log file from AUV Clio taken on R/V Atlantis (CliOMZ AT50-10 expedition) from Golfito Costa Rica to San Diego USA in May-June 2023. (Collaborative Research: Underexplored Connections between Nitrogen and Trace Metal Cycling in Oxygen Minimum Zones Mediated by Metalloenzyme Inventories)

This dataset contains the dive log from Autonomous Underwater Vehicle (AUV) Clio which was obtained during the CliOMZ AT50-10 expedition onboard R/V Atlantis from May-June 2023. The dataset contains metadata specifying sampling characteristics for each dive.

cdm_data_type = Other
VARIABLES:
CRUISE_ID (unitless)
PROGRAM_ID (unitless)
CLIO_DIVE_ID (unitless)
UID (unitless)
STATION (unitless)
DEPTH_STATION_TYPE (unitless)
DEPTH_STATION_ORDER (unitless)
DEPTH_STATION_PARAMETERS (meters)
BAY (unitless)
SUPR_UNIT (unitless)
SUPR_VALVE (unitless)
SUPR_FILTER_INCUBATOR (unitless)
FILTERS (unitless)
STOP_CONDITION_TIME_VOL_RATE (minutes (time), liters (volume), liters per minute (rate))
STOP_TIME (minutes)
STOP_VOLUME (liters)
STOP_RATE (liters per minute)
INCUBATOR_PURGE_TIME (minute)
INCUBATOR_FILL_TIME (minute)
SAMPLE_START_TIME_UTC (UTC)
depth (Actual_depth_m, m)
VOLUME_FILTERED_L (liters)
TIME_SPENT_FILTERING_min (minutes)
VEHICLE_COMMENT (unitless)
SUBMERGE_TIME_UTC (seconds since 1970-01-01T00:00:00Z)
... (8 more variables)


[CliOMZ AT50-10 AUV Clio Data: Processed first profiles] - Processed first profiles of sensor data from AUV Clio taken on R/V Atlantis (CliOMZ AT50-10 expedition) from Golfito Costa Rica to San Diego USA in May-June 2023. (Collaborative Research: Underexplored Connections between Nitrogen and Trace Metal Cycling in Oxygen Minimum Zones Mediated by Metalloenzyme Inventories)

This is oceanographic profiles generated by Clio, an Autonomous Underwater Vehicle (AUV) focused on biogeochemical sampling. Clio was deployed on the R/V Atlantis CliOMZ AT50-10 expedition from Golfito, Costa Rica to San Diego, USA from May - June of 2023. The dataset contains processed profiling sensor data from the initial vehicle descent (i.e., the “first profile”). This profile data contains all sensors binned into 0.5 m depth increments.

cdm_data_type = Other
VARIABLES:
CRUISE_ID (unitless)
DIVE_ID (unitless)
time (Submerge_time_utc, seconds since 1970-01-01T00:00:00Z)
latitude (Submerge_lat, degrees_north)
longitude (Submerge_lon, degrees_east)
LeftBinDepth (meters)
RightBinDepth (meters)
CTDtemp (celsius)
CTDsal (psu, practical salinity unit)
CTDpress (decibar)
CTDconduct (Siemens/meter)
OptO2 (micromolar , uM)
FluoChl (micrograms per deciliter)
FluoTurb (Nephelometric Turbidity unit)
TransCalcBeam (m^-1)
SunaNitrate (micromolar, uM)


[CliOMZ AT50-10 AUV Clio Data: Tracer summary] - Summaries of tigerclaw and bushbaby tracers from AUV Clio taken on R/V Atlantis (CliOMZ AT50-10 expedition) from Golfito Costa Rica to San Diego USA in May-June 2023. (Collaborative Research: Underexplored Connections between Nitrogen and Trace Metal Cycling in Oxygen Minimum Zones Mediated by Metalloenzyme Inventories)

This dataset contains processed profiling sensor data from Autonomous Underwater Vehicle (AUV) Clio which was obtained during the CliOMZ AT50-10 expedition onboard R/V Atlantis from May-June 2023. The mean and standard deviation are given for each sensor parameter during the period in which a particular SUPR sample was taken.

cdm_data_type = Other
VARIABLES:
CRUISE_ID (unitless)
DIVE_ID (unitless)
UID (unitless)
time (Submerge_time_utc, seconds since 1970-01-01T00:00:00Z)
latitude (Submerge_lat, degrees_north)
longitude (Submerge_lon, degrees_east)
Tracer (unitless)
Valve (unitless)
MeanCTDTemp (celsius)
StdCTDTemp (celsius)
MeanCTDSal (psu)
StdCTDSal (psu)
MeanCTDPressure (decibar)
StdCTDPressure (decibar)
MeanCTDConductivity (Siemens / meter)
StdCTDConductivity (Siemens / meter)
MeanO2conc (micromolar, uM)
StdO2 (micromolar, uM)
MeanChl (micrograms per deciliter)
StdChl (micrograms per deciliter)
MeanTurb (Nephelometric Turbidity unit)
StdTurb (Nephelometric Turbidity unit)
MeanTransAtten (m^-1)
StdTransAtten (m^-1)
MeanNitrate (micromolar, uM)
StdNitrate (micromolar, uM)


[CliOMZ AT50-10 Trace Metal Rosette Log] - Trace metal rosette log of samples taken on board of the R/V Atlantis during the CliOMZ AT50-10 expedition from Golfito, Costa Rica to San Diego, USA that occurred in May - June of 2023. (Collaborative Research: Underexplored Connections between Nitrogen and Trace Metal Cycling in Oxygen Minimum Zones Mediated by Metalloenzyme Inventories)

This is the log for the trace metal rosette niskin bottles deployed on the R/V Atlantis CliOMZ AT50-10 expedition from Golfito Costa Rica to San Diego USA that occurred in May - June of 2023.  The log contains metadata associated with each rosette deployment, including location, bottle depth, and time. The rosette was launched on 1/4" kevlar line spooled on a MASH2K winch from the East Coast Winch Pool. The Science party included members from WHOI, UCSB, UTGRV, and Clark University.

cdm_data_type = Other
VARIABLES:
Cruise_ID (unitless)
Station_number (unitless)
Cast_number (unitless)
Start_date_UTC (unitless)
Start_time_UTC (unitless)
time (Iso_datetime_utc_start, seconds since 1970-01-01T00:00:00Z)
Start_Lat (decimal degrees)
Start_Long (decimal degrees)
Cast_total_depth_m (m)
Niskin (unitless)
program_depth (meter (m))
depth (Real_depth, m)
Notes (unitless)
sample_number (unitless)


[CliOMZ AT50-10 Underway Sampling Log] - Log for the samples taken using the Underway system on board of the R/V Atlantis during the CliOMZ AT50-10 expedition from Golfito, Costa Rica to San Diego, USA that occurred in May - June of 2023. (Collaborative Research: Underexplored Connections between Nitrogen and Trace Metal Cycling in Oxygen Minimum Zones Mediated by Metalloenzyme Inventories)

This is the log for the samples taken using the Underway system on board of the R/V Atlantis during the CliOMZ AT50-10 expedition from Golfito, Costa Rica to San Diego, USA that occurred in May - June of 2023.  The log contains metadata associated with the locations where samples were collected, including coordinates, depth, time, volume filtered, filter type, and subsamples' fractions. A Geotech in-line acrylic filter holder connected to a flowmeter were attached to the Underway water flow and particulates were collected. The Science party included members from WHOI, UCSB, UTGRV, and Clark University

cdm_data_type = Other
VARIABLES:
Cruise_ID (unitless)
Station_number (unitless)
Start_Date_UTC (UTC)
Start_Time_UTC (UTC)
End_Date_UTC (UTC)
End_Time_UTC (UTC)
Start_Lat (decimal degrees)
Start_Long (decimal degrees)
End_Lat (decimal degrees)
End_Long (decimal degrees)
depth (m)
Sampling_device (unitless)
At_station_or_transit (unitless)
Filter_type (unitless)
Volume_filtered (liters (L))
DEPLOYMENT_COMMENTS (unitless)
SAMPLE_PRFEIX (unitless)
SUPOR_0_2_PROTEIN1 (unitless)
SUPOR_0_2_PROTEIN2 (unitless)
SUPOR_0_2_DNA1 (unitless)
SUPOR_0_2_DNA2 (unitless)
... (12 more variables)


[CliOMZ Dark DIC fixation rates] - Dark DIC Fixation Rates collected from CliOMZ AT50-10 in the Eastern Pacific Ocean from May to June 2023 (CliOMZ project) (Collaborative Research: Underexplored Connections between Nitrogen and Trace Metal Cycling in Oxygen Minimum Zones Mediated by Metalloenzyme Inventories)

These data include dark dissolved inorganic carbon (DIC) fixation rates measured on R/V Atlantis (CliOMZ AT50-10 expedition) from Golfito, Costa Rica to San Diego, USA in May-June 2023.  We aimed at quantifying dark DIC fixation rates associated with nitrification by specifically inhibiting ammonia-oxidizing microorganisms. Instruments used were a CTD profiler and a scintillation counter (Perkin-Elmer Tri-Carb 2910 TR).

cdm_data_type = Other
VARIABLES:
Cruise (unitless)
Date (unitless)
longitude (Latitude, degrees_east)
latitude (Longitude, degrees_north)
Station (unitless)
depth (m)
Treatment (unitless)
DIC_fixation (nanomoles per liter per day (nmol/L/d))
Incubation_time (hours (h))
DIC_conc (micromoles per liter (umol/L))


[CliOMZ Heterotrophic production rates] - Heterotrophic Production Rates collected from CliOMZ AT50-10 in the Eastern Pacific Ocean from May to June 2023 (CliOMZ project) (Collaborative Research: Underexplored Connections between Nitrogen and Trace Metal Cycling in Oxygen Minimum Zones Mediated by Metalloenzyme Inventories)

These data include heterotrophic production rates measured on R/V Atlantis (CliOMZ AT50-10 expedition) from Golfito, Costa Rica to San Diego, USA in May-June 2023.  We aimed at comparing heterotrophic and chemoautotrophic microbial activities at the selected study sites. Instruments used were a CTD profiler and a scintillation counter (Perkin-Elmer Tri-Carb 2910 TR).

cdm_data_type = Other
VARIABLES:
Cruise (unitless)
Date (unitless)
latitude (degrees_north)
longitude (degrees_east)
Station (unitless)
Cast (unitless)
depth (m)
Het_production (nanomoles carbon per liter per day (nmol C/L/d))
Treatment (unitless)
Incubation_time (hours (h))


[Closed Mesocosm 15N Tracer] - Closed Oyster Mesocosm 15N Tracer (Oyster Reef N2O Emission project) (Microbial Regulation of Greenhouse Gas N2O Emission from Intertidal Oyster Reefs)

Closed Oyster Mesocosm 15N Tracer

cdm_data_type = Other
VARIABLES:
Incubation (unitless)
Time_Hours (hours)
O1_15N2 (O1 15 N2, permil (/mL))
O1_N2O (O1 N2 O, nanomole (nM))
O1_O2 (mgL-1)
O1_Sed_15N (O1 Sed 15 N, permil (/mL))
O2_15N2 (O2 15 N2, permil (/mL))
O2_N2O (O2 N2 O, nanomole (nM))
O2_O2 (mgL-1)
O2_Sed_15N (O2 Sed 15 N, permil (/mL))
O3_15N2 (O3 15 N2, permil (/mL))
O3_N2O (O3 N2 O, nanomole (nM))
O3_O2 (mgL-1)
O3_Sed_15N (O3 Sed 15 N, permil (/mL))
C1_15N2 (C1 15 N2, permil (/mL))
C1_N2O (C1 N2 O, nanomole (nM))
C1_O2 (mgL-1)
C1_Sed_15N (C1 Sed 15 N, permil (/mL))
C2_15N2 (C2 15 N2, permil (/mL))
C2_N2O (C2 N2 O, nanomole (nM))
C2_O2 (mgL-1)
C2_Sed_15N (C2 Sed 15 N, permil (/mL))
C3_15N2 (C3 15 N2, permil (/mL))
C3_N2O (C3 N2 O, nanomole (nM))
C3_O2 (mgL-1)
C3_Sed_15N (C3 Sed 15 N, permil (/mL))


[Clownfish predatory posture] - Quantification of a previously undescribed fast-start of larval clownfish targeting copepod prey: predatory posture, speed and acceleration from high-speed video, July 2015 (The Drive to Survive: Copepods vs Ichthyoplankton)

Posture, strike speed, and acceleration of clownfish larval attack on copepods, from high-speed videos, June-July 2015. Results of these data are published in Fashingbauer et al (in revision, J. Exp. Biol.) and Robinson et al (accepted, MEPS).

cdm_data_type = Other
VARIABLES:
TRIAL_DATE (unitless)
BIRTHDATE (unitless)
DPH (days post hatch)
FISH_AGE_CLASS (unitless)
PREY_STAGE_CLASS (unitless)
STAGE_CATEGORY (unitless)
CLIP_ID (unitless)
CLIP_START (unitless)
CLIP_END (unitless)
CLIP_DURATION (# of frames)
PIXEL_TO_MM (pixels per millimeter)
BODY_LENGTH (milllimeters)
FRAME_APPROACH_START (frame #)
APPROACH_DURATION (seconds)
FRAME_T0_STRIKE (frame #)
STRIKE_DISTANCE_PIXEL (pixels)
STRIKE_DISTANCE_MM (milllimeters)
TIME_FROM_T0_TO_CAPTURE (milliseconds)
PEAK_STRIKE_SPEED (millimeters/second)
STRIKE_SPEED_T_2ms (millimeters/second)
STRIKE_SPEED_T1ms (millimeters/second)
STRIKE_SPEED_T3ms (millimeters/second)
STRIKE_SPEED_T5ms (millimeters/second)
STRIKE_SPEED_T7ms (millimeters/second)
STRIKE_SPEED_T9ms (millimeters/second)
... (31 more variables)


[CO2 x temperature effects on Menidia menidia offspring] - CO2 × temperature specific early life survival and growth of Menidia menidia assessed by 5 factorial experiments (Collaborative research: Understanding the effects of acidification and hypoxia within and across generations in a coastal marine fish)

In five individual rearing experiments, wild-caught M. menidia adults were spawned to test offspring sensitivity to factorial combinations of pCO2 (nominal: 400, 2200, 4000, and 6000 \u00b5atm) and temperature (17, 20, 24, and 28 \u00b0C) through measurements of early-life survival and growth. For experiment 1, adults were collected from Poquot Beach (40.947376, -73.10258), and the experiment took place at Stony Brook University\u2019s Flax Pond Marine Laboratory. For experiments 2\u20135, spawning adults were collected from Mumford Cove (41.321526, -72.015247), and experiments were conducted in the Rankin Seawater Facility at University of Connecticut\u2019s Avery Point campus. The experiments quantified two survival and two growth traits for each replicate and CO2 \u00d7 temperature treatment; embryo survival (fertilization to 1 dph), larval survival (1 dph to experiment termination), size (SL) at hatch (1 dph), and growth rate ((SL at end of experiment \u2013 SL 1dph)/number days reared post hatch). These data are published in: Murray, C.S., and Baumann, H. (2018) You Better Repeat It: Complex CO2 \u00d7 Temperature Effects in Atlantic Silverside Offspring Revealed by Serial experimentation. Diversity. doi:10.3390/d10030069.

cdm_data_type = Other
VARIABLES:
experiment (unitless)
species (unitless)
adult_collection_site (unitless)
latitude (degrees_north)
longitude (degrees_east)
tank (unitless)
replicate (unitless)
temperature (degrees Celsius)
pH (Sea Water Ph Reported On Total Scale, pH NBS)
pCO2 (P CO2, atm)
fertilization_date (unitless)
hatch_sample_date (unitless)
hatch_sample_age (days)
final_sample_date (unitless)
final_sample_age (days)
... (5 more variables)


[Coastal intertidal temperatures] - Intertidal temperatures measured via data loggers deployed at 19 rocky intertidal sites in California, USA and Baja California, Mexico from spring 2022 to fall 2023 (Predicting impacts of coastal species redistribution in a changing climate)

Coastal zones are some of the most productive and most threatened ecosystems on Earth, yet our ability to predict their vulnerability or resilience is limited due to the highly dynamic nature of these habitats. Importantly, surface temperatures measured at broad scales (e.g., by satellites) cannot capture onshore temperatures which vary at meso- and micro-scales due to, e.g., aspect, solar radiation, waves, etc. We monitored intertidal temperatures via data loggers deployed at 19 rocky intertidal sites in California, USA and Baja California, Mexico. Loggers were deployed at 1.0 meter (m) above MLLW (mean lower-low water) at all sites and at 0.5 and 1.5 m at a subset of sites. At each site and tide height (for sites with multiple loggers), completeness of the temperature record varies but most provide continuous records for up to ~18 months from spring 2022 to fall 2023.

cdm_data_type = Other
VARIABLES:
Site_Name (unitless)
Latitude (degrees_north)
longitude (degrees_east)
Elevation (meters above mean lower-low water)
ISO_DateTime_PDT (unitless)
time (Iso_datetime_utc, seconds since 1970-01-01T00:00:00Z)
Temperature (degrees Celsius)


[Coastal SAR11 Physiochemical data] - Physiochemical data from samples collected along the coast of Louisiana, USA during 2018 (Collaborative Research: EAGER: Salinity-based selection between sister clades of abundant coastal bacterioplankton)

Physiochemical data from samples collected along the coast of Louisiana, USA during 2018.

cdm_data_type = Other
VARIABLES:
Site (unitless)
latitude (degrees_north)
longitude (degrees_east)
Date (unitless)
Time_Central (unitless)
Offset (unitless)
Time_UTC (unitless)
Temp (Temperature, degrees Celsius)
Cond (ms/cm)
Salinity (Sea Water Practical Salinity, unitless)
pH (Sea Water Ph Reported On Total Scale, unitless)
Cell_counts (cells/mL)
PO4 (Mass Concentration Of Phosphate In Sea Water, umol/L)
SiOH4 (Si OH4, umol/L)
NO3 (Mole Concentration Of Nitrate In Sea Water, umol/L)
NO2 (Mole Concentration Of Nitrite In Sea Water, umol/L)
NH4 (Mole Concentration Of Ammonium In Sea Water, umol/L)
time (ISO Date Time UTC, seconds since 1970-01-01T00:00:00Z)


[coccolithophore-associated biopolymers for radionuclides] - Coccolithophore-associated organic biopolymers for fractionating particle-reactive radionuclides (234Th, 233Pa, 210Pb, 210Po, and 7Be) (Biopolymers as carrier phases for selected natural radionuclides (of Th, Pa, Pb, Po, Be) in diatoms and coccolithophores)

Laboratory incubation experiments using the coccolithophore Emiliania huxleyi were conducted in the presence of 234Th, 233Pa, 210Pb, 210Po, and 7Be to differentiate radionuclide uptake to the CaCO3 coccosphere from coccolithophore-associated biopolymers.

cdm_data_type = Other
VARIABLES:
Biopolymer_Fraction (unitless)
Th234_Activity (unitless)
Pa233_Activity (unitless)
Pb210_Activity (unitless)
Po210_Activity (unitless)
Be7_Activity (unitless)
Protein_Amount (microMole Carbon (uM-C))
TCHO_Amount (microMole Carbon (uM-C))
URA_Amount (microMole Carbon (uM-C))
Protein_C_TCHO_C (unitless)
URA_pcnt_TCHO (unitless)


[Cocos Ridge C14 Data] - Radiocarbon (C14) calendar ages measured on pelagic foraminifera species collected from sediment cores from the Cocos Ridge (Eastern Equatorial Pacific) acquired during cruise SR2113 between November - December 2021. (Collaborative Research: New approaches to study calcium carbonate dissolution on the sea floor and its impact on paleo-proxy interpretations)

These data include radiocarbon (C14) calendar ages measured on pelagic foraminifera species collected from sediment cores from the Cocos Ridge in the Eastern Equatorial Pacific. This cruise was aboard the R/V Sally Ride between 2021-11-20 and 2021-12-20. Instruments used were a multicorer and accelerator mass spectrometry . These data contributed to our understanding of the carbonate chemistry system in this region, particularly regarding carbonate dissolution in deep-sea sediments. Patrick Rafter (UC Irvine) measured C14 calendar ages.

cdm_data_type = Other
VARIABLES:
Station (unitless)
Date (unitless)
Latitude (degrees_north)
longitude (degrees_east)
depth (Water_column_depth, m)
Sediment_Depth (centimeters (cm))
Foram_sp (unitless)
AphiaID (unitless)
C14_age (year (yr))


[Cocos Ridge Porewater Data] - In situ porewater data from the Cocos Ridge (Eastern Equatorial Pacific) acquired during cruise SR2113 between November - December 2021 (Collaborative Research: New approaches to study calcium carbonate dissolution on the sea floor and its impact on paleo-proxy interpretations)

These data include porewater measurements with a focus on carbonate chemistry from the Cocos Ridge in the Eastern Equatorial Pacific. This cruise was aboard the R/V Sally Ride between 2021-11-20 and 2021-12-20. Instruments used were a novel in situ porewater sampler, spectrophotometer, Liaison autosampler coupled to a Picarro cavity ring-down spectrometer, Inductively Coupled Plasma - Mass Spectrometer, and Inductively Coupled Plasma - Optical Emission Spectrometer. These data contributed to our understanding of the carbonate chemistry system in this region, particularly regarding carbonate dissolution in deep-sea sediments. Xuewu Liu and Kalla Fleger, members of the Robert Byrne lab at University of South Florida, measured alkalinity and pH; Nick Rollins and Jaclyn Cetiner, members of the Will Berelson lab at University of Southern California, measured DIC and delta 13C of DIC; Matt Quinan of the Berelson lab measured silica; Jaclyn Cetiner (USC) and Frank Pavia (Caltech) measured manganese. Jaclyn Cetiner (USC) and Anna Waldeck (Northwestern) measured calcium and strontium.

cdm_data_type = Other
VARIABLES:
Station (unitless)
Deployment (unitless)
Date (unitless)
latitude (degrees_north)
longitude (degrees_east)
Sample_ID (unitless)
Water_Column_Depth (meters (m))
Sediment_Depth (centimeters (cm))
Alkalinity (micromoles per kilogram (umol/kg))
pH (total pH scale)
Silica (micromolar (uM))
DIC (micromoles per kilogram (umol/kg))
d13C_DIC (per mil (0/00))
Manganese (micromoles per kilogram (umol/kg))
Calcium (millimoles per kilogram (mmol/kg))
Strontium (micromoles per kilogram (umol/kg))
Omega_calcite (unitless)


[Cocos Ridge Solid Phase Data] - Solid phase measurements of sediment cores from the Cocos Ridge (Eastern Equatorial Pacific) acquired during cruise SR2113 between November - December 2021. (Collaborative Research: New approaches to study calcium carbonate dissolution on the sea floor and its impact on paleo-proxy interpretations)

These data include solid phase measurements on sediment cores from the Cocos Ridge in the Eastern Equatorial Pacific. This cruise was aboard the R/V Sally Ride between 2021-11-20 and 2021-12-20. Instruments used were a multicorer, Liaison autosampler coupled to a Picarro cavity ring-down spectrometer, and Element Analyzer coupled to a Picarro cavity ring-down spectrometer. These data contributed to our understanding of the carbonate chemistry system in this region, particularly regarding carbonate dissolution in deep-sea sediments. Sijia Dong (Caltech) and Nick Rollins (USC) measured CaCO3 (PIC) and Organic_C (POC).

cdm_data_type = Other
VARIABLES:
Station (unitless)
Date (unitless)
Latitude (degrees_north)
longitude (degrees_east)
Water_Column_Depth (meters (m))
Sediment_Depth (centimeters (cm))
Porosity (percent (%))
CaCO3 (percent (%))
Organic_C (percent (%))


[Cocos Ridge Water Column Data] - Water column data from the Cocos Ridge (Eastern Equatorial Pacific) acquired during cruise SR2113 between November - December 2021 (Collaborative Research: New approaches to study calcium carbonate dissolution on the sea floor and its impact on paleo-proxy interpretations)

These data include water column parameters and carbonate chemistry measurements from the Cocos Ridge in the Eastern Equatorial Pacific. This cruise was aboard the R/V Sally Ride between 2021-11-20 and 2021-12-20. Instruments used were a CTD profiler, spectrophotometer, and Picarro cavity ring-down spectrometer. These data contributed to our understanding of the carbonate chemistry system in this region, particularly the water depth location of the calcite saturation horizon. Xuewu Liu and Kalla Fleger, members of the Robert Byrne lab at University of South Florida, measured alkalinity and pH;  Nick Rollins and Jaclyn Cetiner, members of the Will Berelson lab at University of Southern California, measured DIC and delta 13C of DIC.

cdm_data_type = Other
VARIABLES:
Station (unitless)
Cast (unitless)
Date (unitless)
Start_Time (unitless)
time (Iso_datetime_utc, seconds since 1970-01-01T00:00:00Z)
Latitude (degrees_north)
longitude (degrees_east)
Water_Column_Depth (meters (m))
Pressure (decibars (db))
Temperature (degrees Celcius (C))
Salinty (parts per thousand (ppt))
Oxygen (micromoles per kilogram (umol/kg))
Alkalinity (micromoles per kilogram (umol/kg))
pH (total pH scale)
DIC (micromoles per kilogram (umol/kg))
d13C_DIC (per mil (0/00))
Omega_calcite (unitless)


[cod bycatch redux gear_swimming behavior] - Cod by-catch reducing gear: video observations of fish behavior from Fishing Vessels NEC-MP2000-2 in the Gulf of Maine from 2000-2002 (NEC-CoopRes project) (Northeast Consortium: Cooperative Research)

Cod by-catch reducing gear: video observations of fish behavior from Fishing Vessels NEC-MP2000-2 in the Gulf of Maine from 2000-2002 (NEC-CoopRes project).

cdm_data_type = Other
VARIABLES:
species
rope_interaction
net_type
behavior (unitless)
number (fish)
time_elapsed (minutes)
date_local (unitless)
day_local (unitless)
month_local (unitless)
year (unitless)
yrday_local (unitless)


[Colonization experiment Tica Vent AT42-21 and RR2102] - Counts of faunal colonists found on experimental settlement surfaces deployed at Tica Vent in East Pacific Rise on R/V Atlantis cruise AT42-21 and R/V Roger Revelle cruise RR2102 from Dec 2019 to Apr 2021 (RUI: Collaborative: The Predictive Nature of Microbial Biofilms for Cuing Larval Settlement at Deep-Sea Hydrothermal Vents)

These data include counts of faunal colonists found on experimental settlement surfaces (termed “sandwiches” – comprised of 6 stacked polycarbonate plates separated by spacers) deployed at Tica Vent in the 9°50' N region of the East Pacific Rise and details of the colonization experiment deployments and recoveries (e.g., dive numbers, deployment and recovery times, temperature measurements, etc.).
Some sandwiches were originally deployed on cruise AT42-21 (R/V Atlantis, December 2019) and additional sandwiches were deployed and all were recovered on cruise RR2102 (R/V Roger Revelle, March-April 2021). Deployment and recovery of sandwiches utilized deep submergence vehicles HOV Alvin and ROV Jason. Sandwiches were deployed in three biogenic zones (Alvinella-dominated, Riftia-dominated, and mussel-dominated) and had either an established microbial biofilm or no biofilm upon the start of the colonization experiment. It was hypothesized that established microbial biofilms may be indicators of suitable habitat for faunal colonists, specifically larvae, in hydrothermal vent environments characterized by high spatial and temporal variability in abiotic conditions. These short-term (~2 week) colonization experiments thus tested whether the age of the microbial biofilm influenced faunal communities that colonized surfaces across a gradient of habitat conditions.
These data were collected as part of a collaborative project involving the personnel associated with the labs of Dr. Shawn Arellano (Western Washington University), Dr. Lauren Mullineaux (Woods Hole Oceanographic Institution), and Dr. Costantino Vetriani (Rutgers University). This dataset is published in Ladd et al., 2024 (DOI: 10.1016/j.dsr.2024.104314).

cdm_data_type = Other
VARIABLES:
ID (unitless)
Sample_type (unitless)
latitude (degrees_north)
longitude (degrees_east)
Site_name (unitless)
Zone (unitless)
Cruise_deployed (unitless)
Dive_deployed (unitless)
... (72 more variables)


[Colonization sampler log] - Dates and locations of colonization sampler deployments and recoveries from East Pacific Rise (EPR) deep-sea vents, 1998-2017 (Effects of Disturbance and Larval Supply on Communities at Hydrothermal Vents)

This dataset dates and locations of colonization sampler deployments and recoveries from East Pacific Rise (EPR) deep-sea vents, 2006-2017.

cdm_data_type = Other
VARIABLES:
Recover_Cruise (unitless)
Vessel (unitless)
Cruise_ID (unitless)
Cruise_start (unitless)
Cruise_end (unitless)
Chf_Sci (unitless)
Vehicle (unitless)
Start (unitless)
End (unitless)
Location (unitless)
latitude (degrees_north)
longitude (degrees_east)
Site (unitless)
Habitat (unitless)
Chemistry (unitless)


[Colony level bleaching severity and mortality] - Coral bleaching severity and mortality data from patch reef 13 in Kāne'ohe Bay, O'ahu, Hawai'i from 2015 to 2022 (RAPID: Collaborative Research: Disentangling the effects of heat stress versus bleaching phenotype on coral performance)

This dataset contains coral colony-level bleaching severity and mortality (coral genotype, bleaching phenotype, bleaching score, mortality percent) from patch reef 13 in Kāne'ohe Bay, O'ahu, Hawai'i from 2015 to 2022.

This data set was collected as part of a study of benthic community composition data from patch reef 13 and colony-level bleaching severity data. See Related Dataset "Benthic cover" for more data from this study.

Study abstract:

Increasingly frequent marine heatwaves are devastating coral reefs. Corals that survive these extreme events must rapidly recover if they are to withstand subsequent events, and long-term survival in the face of rising ocean temperatures may hinge on recovery capacity and acclimatory gains in heat tolerance over an individual's lifespan. To better understand coral recovery trajectories in the face of successive marine heatwaves, we monitored the responses of bleaching-susceptible and bleaching-resistant individuals of two dominant coral species in Hawaiʻi, Montipora capitata and Porites compressa, over a decade that included three marine heatwaves.

cdm_data_type = Other
VARIABLES:
ColonyID (unitless)
Species (units)
Bleach (unitless)
Date (unitless)
Score (units)
Phenotype
Mortality (percent  (%))


[Colony to colony interactions] - Data describing interactions between colonies on St. John, Virgin Islands in 2014. (LTREB Long-term coral reef community dynamics in St. John, USVI: 1987-2019)

Data describing interactions between colonies on St. John, Virgin Islands in 2014.

cdm_data_type = Other
VARIABLES:
year (unitless)
season (unitless)
site (unitless)
latitude (degrees_north)
longitude (degrees_east)
transect (unitless)
meter (meters)
species (unitless)
interaction_type (unitless)
damage (unitless)
growth_asym (unitless)
height (centimeters)


[Coloration discovery] - Cyprinodon variegatus offspring growth rate from coloration discovery experiments conducted on specimens wild caught from the Atlantic in 2014 (Beyond maternal effects: Transgenerational plasticity in thermal performance)

Cyprinodon variegatus offspring growth rate from coloration discovery experiments conducted on specimens wild caught from the Atlantic in 2014.

cdm_data_type = Other
VARIABLES:
Population (unitless)
Score (unitless)
Age (day)
Length (millimeters)
Mass (milligrams)
F (unitless)
Gmass (milligrams)
GSI (percentage)


[Community 16S rRNA gene sequences] - Accession numbers for raw sequences associated with field collections & microcosms, 2015 and 2016 (Vibrio as a model microbe for opportunistic heterotrophic response to Saharan dust deposition events in marine waters)

Accession numbers for raw sequences associated with field collections & microcosms, 2015 and 2016

cdm_data_type = Other
VARIABLES:
BioProject (Bio Project, unitless)
study (unitless)
sample_description (unitless)
year (unitless)
num_sequences (unitless)
NCBI_link (unitless)


[Community composition of corals in Palau determined by quantitative transects] - Community composition of corals in Palau determined by quantitative transects sampled in April 2023 (Collaborative Research: How do selection, plasticity, and dispersal interact to determine coral success in warmer and more variable environments?)

Bottlenecks in the early life-history stages of corals can shape community composition across reefs. We used photographic surveys and the deployment of tiles to capture recruit, juvenile, and adult corals at 7 sites across Palau. Photographic surveys were undertaken using two methods: a qualitative biodiversity survey (2021–2022) and quantitative transects (2023). This dataset includes the results from the quantitative transects.

cdm_data_type = Other
VARIABLES:
Site (unitless)
Latitude (degrees_north)
longitude (degrees_east)
Type (unitless)
Stage (unitless)
Transect (unitless)
Genus (unitless)
Abundance (counts of individuals in each 10 square meter transect)


[Community survey data on invertebrate and algal density] - Kelp forest community surveys on invertebrate and algal density from nearshore in Monterey and Carmel starting in 1999 (Kelp Forest Resilience project) (Kelp forest community resilience in action: adaptive responses of predators to a disease-driven food web perturbation)

Kelp forest community surveys on invertebrate and algal density from nearshore in Monterey and Carmel starting in 1999 (Kelp Forest Resilience project)

cdm_data_type = Other
VARIABLES:
year (unitless)
site (unitless)
side (unitless)
latitude (degrees_north)
longitude (degrees_east)
zone (unitless)
transect (unitless)
depth (m)
date (unitless)
classcode (unitless)
count (count)
size (centimeters (cm))
notes (unitless)


[comparative lionfish behavior] - Behavioral observations of lionfish at native Pacific and invaded Atlantic locations (Bahamas, Cayman Islands, Guam, Philippines) from 2009-2012 (Lionfish Invasion project) (Ecological Release and Resistance at Sea: Invasion of Atlantic Coral Reefs by Pacific Lionfish)

Behavioral observations of lionfish, with a focus on hunting activity throughout the day, at native Pacific (Guam and the Philippines) vs. invasive Atlantic locations (Bahamas and Caymans) to assess possible differences between ranges. Particular emphasis was placed on species hunted, time spent hunting and total numbers of kills and strikes. The investigators hypothesized that lionfish at invaded locations would have higher success at killing prey and spend less time hunting.

cdm_data_type = Other
VARIABLES:
basin (text)
region (text)
site (text)
latitude (degrees_north)
longitude (degrees_east)
date (unitless)
month (mm (01 to 12))
day (dd (01 to 31))
year (unitless)
time_sunrise (HH:MM)
time_sunset (HH:MM)
method (text)
time_start (HH:MM)
time_start_adjusted (HH:MM)
person (text)
location (text)
body_orientation (text)
habitat (text)
weather (text)
current_strength (text)
tagged (yes/no)
fish_id (code)
num_spines_clipped (text or numbers)
... (22 more variables)


[Compensatory growth and TGP] - Compensatory growth and TGP data from experiments conducted on juvenile Cyprinodon variegatus that were wild caught in the Atlantic during 2014 (Beyond maternal effects: Transgenerational plasticity in thermal performance)

Compensatory growth and TGP data from experiments conducted on juvenile Cyprinodon variegatus that were wild caught in the Atlantic during 2014.

cdm_data_type = Other
VARIABLES:
Group (unitless)
Ptemp (degrees Celsius)
Otemp (Ocean Temperature, degrees Celsius)
Sex (unitless)
Maturation (count)
Initial_WK2 (millimeters)
Manipulation_WK10 (millimeters)
Compensation_WK15 (millimeters)
GSI (percent)


[Compound specific isotope data] - Compound specific isotope data of amino acids for abyssal macrofauna, megafauna, sediments, sediment traps, and in situ filtered particles at Station ALOHA off Hawaii and Station M off California from 2019 to 2020 (Collaborative Research: Assessing the relative importance of small vs large particles as sources of nutrition to abyssal communities)

This dataset includes compound specific isotope data of amino acids for abyssal macrofauna, megafauna, sediments, sediment traps, and in situ filtered particles from off California (Station M) and Hawaii (Station ALOHA) collected from 2019 to 2020. These data were collected as part of a food web project to evaluate the relative importance of small and large particle types to abyssal communities.

cdm_data_type = Other
VARIABLES:
Sample (unitless)
Cruise (unitless)
Date_initial (unitless)
Date_final (unitless)
Site (unitless)
Latitude (degrees_north)
longitude (degrees_east)
Type (unitless)
Species (unitless)
Type_filter (unitless)
depth (m)
d15N (‰, vs AIR)
d13C (‰, vs VPDB)
ALA_N (‰, vs AIR)
GLY_N (‰, vs AIR)
THR_N (‰, vs AIR)
SER_N (‰, vs AIR)
VAL_N (‰, vs AIR)
LEU_N (‰, vs AIR)
ILE_N (‰, vs AIR)
PRO_N (‰, vs AIR)
ASX_N (‰, vs AIR)
GLX_N (‰, vs AIR)
... (42 more variables)


[Concentration and δ15N of Amino Acids in Size-fractionated Particles] - Concentration and δ15N of amino acids in size-fractionated particles from the eastern tropical North Pacific ODZ in December 2020 (Collaborative research: Using individual amino acids N isotopes in sinking particles and surficial sediments to reconstruct euphotic zone N sources and trophic structure)

This dataset includes the concentration and δ15N of bulk N and amino acids in size-fractionated particles. Particle samples were collected aboard the R/V Sally Ride (cruise SR2011) from December 23 – 30, 2020 with a McLane large volume pumping system (WTS-LV). These data assess the nitrogen sources utilized by different phytoplankton communities inhabiting the two chlorophyll maxima and the transformation of particulate organic matter within the oxygen-deficient zone.

cdm_data_type = Other
VARIABLES:
time (Iso_datetime_utc, seconds since 1970-01-01T00:00:00Z)
latitude (degrees_north)
longitude (degrees_east)
Station (unitless)
Size_fraction (micrometers)
depth (m)
Bulk_N (nanomoles per liter (nmol/L))
Phe (nanomoles per liter (nmol/L))
Glu (nanomoles per liter (nmol/L))
bulk_d15N (per mil relative to air)
d15N_Phe (per mil relative to air)
d15N_Phe_sd (per mil relative to air)
d15N_Glu (per mil relative to air)
d15N_Glu_sd (per mil relative to air)
TP (unitless)
TP_sd (unitless)


[Concentrations of phospholipid-linked fatty acids (PLFAs)] - Concentrations of phospholipid-linked fatty acids (PLFAs) in the surface sediments of three marsh ponds in PIE-LTER (Rowley, MA) from 2014. (Eutrophication Effects on Sediment Metabolism and Benthic Algal-bacterial Coupling: An Application of Novel Techniques in a LTER Estuary)

Concentrations of phospholipid-linked fatty acids (PLFAs) in the surface sediments of three marsh ponds in PIE-LTER (Rowley, MA). Data were collected over 11 weeks in the summer and fall of 2014.

cdm_data_type = Other
VARIABLES:
Pond (unitless)
Week (unitless)
Season (unitless)
Tide (unitless)
Sampling_Date (unitless)
C12_0 (per mil)
iso_C13 (per mil)
anteiso_C13 (per mil)
C13_0 (per mil)
iso_C14 (per mil)
C14_0 (per mil)
iso_C15 (per mil)
anteiso_C15 (per mil)
C15_0 (per mil)
iso_C16 (per mil)
iso_16_1w9c (per mil)
iso_16_1w9t (per mil)
iso_16_1w7 (per mil)
C16_0 (per mil)
methyl_10_C16 (per mil)
iso_C17 (per mil)
anteiso_C17 (per mil)
C17_1 (per mil)
C17_0 (per mil)
C18_4 (per mil)
C18_2 (per mil)
... (21 more variables)


[Consensus Reference Material Collection Data] - Consensus Reference Material Collection Data of marine dissolved organic matter collected in the Florida Strait between 2019 and 2023 (Preparation and Distribution of DOC Consensus Reference Materials)

The laboratory of Prof. Dennis A. Hansell at the University of Miami is supported by the U.S. National Science Foundation to provide the international community of marine dissolved organic matter analysts the reference waters needed for testing their analytical results against those of a select group of expert analysts.

Three depths of the water column are sampled in the Florida Strait, typically twice each year,  to collect and distribute those waters as reference materials. The deepest water (i.e., deep seawater reference (DSR)) is collected in the Florida Straits at 700 m depth. A mid depth seawater reference (MSR), is collected at 150 m depth and surface seawater reference (SSR) is collected at 5 m. In the data table that follows, the relevant information for each collection during NSF Grant OCE-1844886, awarded to the Hansell laboratory, is provided. These details include the ship employed and its cruise designations, the dates of collection, the batch and lot numbers designated for the reference waters, the locations and depths sampled, the concentrations of dissolved organic carbon (DOC) and total dissolved nitrogen (TDN) in each lot. Finally, hyperlinks to the associated CTD and underway data, archived by RVDATA.US, are provided.

cdm_data_type = Other
VARIABLES:
Cruise_ID (unitless)
Collection_Date (unitless)
Latitude (degrees_north)
longitude (degrees_east)
Batch_ID (unitless)
Designations (unitless)
Sampling_Depths (unitless)
DOC_Conc_uM_Min (micromoles carbon per liter (uM/L))
DOC_Conc_uM_Max (micromoles carbon per liter (uM/L))
TDN_Conc_uM_Min (micromoles nitrogen per liter (uM/L))
TDN_Conc_uM_Max (micromoles nitrogen per liter (uM/L))
Ship (unitless)
Ship_Data (unitless)


[Control incubation data during calcification experiments] - Control incubation data during Mytilus californianus calcification experiments from 2020 to 2022 (OA decoupling project) (Invertebrate calcification and behavior in seawater of decoupled carbonate chemistry)

These data support Incubation data for Mytilus californianus calcification. These incubations did not contain mussels and demonstrate that background alkalinity changes during experimental modules were minor. These data support Incubation data for Mytilus californianus calcification. These data demonstrate that background alkalinity changes during experimental modules were minor.

cdm_data_type = Other
VARIABLES:
species (units)
AphiaID (unitless)
LSID (unitless)
module (unitless)
date_local (unitless)
start_time_local (unitless)
ISO_start_DateTime_UTC (unitless)
duration (hours (h))
salinity (PSU)
temperature (degrees Celcius (c))
TA (umol kg-1)
ph (unitless)
hco3 (umol kg-1)
co3 (umol kg-1)
omega (unitless)
pco2 (uatm)
dic (umol kg-1)
do (umol kg-1)
incubation_water_mass (kilograms (kg))
delta_ta (umol kg-1)
delta_nh3 (umol kg-1)


[Controlled laboratory study using model organisms Micromonas commoda RCC 299 and Ruegeria pomeroyi DSS-3] - Bacterial transcriptional response to picoeukaryote Micromonas commoda (Effects of Climate Change Variables on Microbial Autotroph-Heterotroph Carbon Flux)

Marine biogeochemical cycles are built on interactions between surface ocean microbes, particularly those connecting phytoplankton primary producers to heterotrophic bacteria. However, direct influences of bacteria on phytoplankton physiology are poorly known. In this study, three marine bacteria (Ruegeria pomeroyi DSS-3, Stenotrophomonas sp. SKA14, and Polaribacter dokdonensis MED152) were co-cultured with green alga Micromonas commoda, and the phytoplankter's transcriptome was studied by RNASeq. The presence of each bacterium invoked transcriptomic remodeling by M. commoda after 8 h in co-culture. Some aspects of the algal transcriptomic response were conserved across all three bacteria, while others were restricted to a single bacterium. M. commoda had both rapid and extensive responses to heterotrophic bacteria.

cdm_data_type = Other
VARIABLES:
Bottle_ID (unitless)
Treatment (unitless)
Time_h (hour (h))
Micromonas_cells_ml (cells per milliliter (cell/ml))
Bacteria_cells_ml (cells per milliliter (cell/ml))
NH4_uM (micromolar (uM))
NO3_uM (micromolar (uM))
PO4_uM (micromolar (uM))
NCBI_Sample_ID (unitless)
Accession (unitless)
BioProject (unitless)
Organism (unitless)
Taxonomy_ID (unitless)
Description (unitless)


[Coral 3D scans] - Coral stereolithography files and sampling information for Acropora palmata, A. cervicornis, and A. prolifera from St. Thomas U.S. Virgin Islands and Belize, 2015 (Collaborative research: Is hybridization among threatened Caribbean coral species the key to their survival or the harbinger of their extinction?)

Coral specimens collected in the St. Thomas, U.S. Virgin Islands and Belize were 3-dimensionally scanned. This dataset includes metadata on the coral samples such as the collection location and conditions, and the dimensions of the samples. The STL files are available for download in the Supplemental Documentation section below.

cdm_data_type = Other
VARIABLES:
scan_filename (unitless)
Species (unitless)
Coral_ID (unitless)
Genetics_ID (unitless)
Location (unitless)
Site (unitless)
latitude (degrees_north)
longitude (degrees_east)
time (Scan Date, seconds since 1970-01-01T00:00:00Z)
Collection_Depth_ft (feet)
Current_Direction_from (unitless)
Wave_Energy (unitless)
Benthic_Type (unitless)
Length_cm (centimeters)
Width_cm (centimeters)
Height_cm (centimeters)
Volume (centimeters^3)


[Coral and macroalgae abundance and distribution] - Scleractinia, macroalgae and octocoral surveys describing species abundance and distribution, in St. John, USVI in 1987–2013 (St. John LTREB project, VI Octocorals project). (LTREB Long-term coral reef community dynamics in St. John, USVI: 1987-2019)

\u00a0Scleractinian, octocoral, and macroalgae abundance and percent cover.

cdm_data_type = Other
VARIABLES:
site (unitless)
year (year)
AntillogorgiaCover_mean (Antillogorgia Cover Mean, percent)
AntillogorgiaCover_SE (Antillogorgia Cover SE, percent)
GorgoniaCover_mean (Gorgonia Cover Mean, percent)
GorgoniaCover_SE (Gorgonia Cover SE, percent)
PlexauraCover_mean (Plexaura Cover Mean, percent)
PlexauraCover_SE (Plexaura Cover SE, percent)
totalOctocoralCover_mean (Total Octocoral Cover Mean, percent)
totalOctocoralCover_SE (Total Octocoral Cover SE, percent)
AntillogorgiaAbundance_mean (Antillogorgia Abundance Mean, count)
AntillogorgiaAbundance_SE (Antillogorgia Abundance SE, count)
GorgoniaAbundance_mean (Gorgonia Abundance Mean, count)
GorgoniaAbundance_SE (Gorgonia Abundance SE, count)
PlexauraAbundance_mean (Plexaura Abundance Mean, count)
PlexauraAbundance_SE (Plexaura Abundance SE, count)
totalAbundance_mean (Total Abundance Mean, count)
totalAbundance_SE (Total Abundance SE, count)
ScleractinianCover_mean (Scleractinian Cover Mean, percent)
ScleractinianCover_SE (Scleractinian Cover SE, percent)
MacroalgaeCover_mean (Macroalgae Cover Mean, percent)
MacroalgaeCover_SE (Macroalgae Cover SE, percent)
CTBcover_mean (percent)
CTBcover_SE (percent)


[Coral Associated Microbes on Mo'orean Coral Reefs] - Coral associated microbes on coral, sediment and water sampled from coral reefs in Mo'orea, French Polynesia in 2017 and 2018 (Collaborative Research: Viral Reefscapes: The Role of Viruses in Coral Reef Health, Disease, and Biogeochemical Cycling)

Three species of coral, plus water and sediment, were sampled at 21 sites around the island of Mo'orea, French Polynesia during the dry and rainy seasons in 2017 and 2018.  Coral associated microbes (bacteria and archaea) were investigated and their community composition characterized through sequencing of the 16S rRNA gene.

cdm_data_type = Other
VARIABLES:
BioSample_accession (unitless)
Sample_name (unitless)
Organism (unitless)
Collection_date (unitless)
Depth (meters (m))
Env_Local_Scale (unitless)
Geo_Loc_Name (unitless)
latitude (degrees_north)
longitude (degrees_east)
Host (unitless)
Host_Subject_ID (unitless)
Sequencing_Replicate (unitless)


[Coral calcification (G) from 1992-2019 in support of Edmunds and Perry (2023) MEPS] - Coral calcification (G) from six sites on the south coast of St. John, USVI from 1992 to 2019 (LTREB Long-term coral reef community dynamics in St. John, USVI: 1987-2019)

These data describe coral calcification (G) from 1992-2019 at six sites on the south coast of St. John. G was calculated from ReefBudget using coral density and size by taxon and quadrat.

These data were published in Edmunds and Perry (2023).

cdm_data_type = Other
VARIABLES:
Site (unitless)
lat (degrees_north)
longitude (degrees_east)
Year (unitless)
Image (unitless)
Orbicella_spp (kilograms of calcium carbonate per meter squared per year (kg CaCO3 m-2 yr-1))
P_astreoides (kilograms of calcium carbonate per meter squared per year (kg CaCO3 m-2 yr-1))
S_siderea (kilograms of calcium carbonate per meter squared per year (kg CaCO3 m-2 yr-1))
A_agaricites (kilograms of calcium carbonate per meter squared per year (kg CaCO3 m-2 yr-1))
Millepora_spp (kilograms of calcium carbonate per meter squared per year (kg CaCO3 m-2 yr-1))
M_cavernosa (kilograms of calcium carbonate per meter squared per year (kg CaCO3 m-2 yr-1))
P_porites (kilograms of calcium carbonate per meter squared per year (kg CaCO3 m-2 yr-1))
Other (kilograms of calcium carbonate per meter squared per year (kg CaCO3 m-2 yr-1))


[Coral calcification histories] - Annual calcification histories for corals from ten Palau reef sites representing lagoon and barrier reef environments (Constraining Thermal Thresholds and Projections of Temperature Stress on Pacific Coral Reefs Over the 21st Century: Method Refinement and Application)

Annual calcification histories for corals from ten Palau reef sites representing lagoon and barrier reef environments.

cdm_data_type = Other
VARIABLES:
site (unitless)
reef_type (unitless)
latitude (degrees_north)
longitude (degrees_east)
coral_id (unitless)
year (unitless)
density (grams per square centimeter (g/cm2))
extension (centimeters per year (cm/yr))
calcification (grams per square centimeter per year (g/cm2/yr))


[Coral calcification rates] - Coral calcification rates from experiments conducted on Oahu, Hawaii from December of 2014 to November of 2015 (Will corals recover from bleaching under ocean acidification conditions?)

Coral calcification rates from experiments conducted on Oahu, Hawaii from December of 2014 to November of 2015

cdm_data_type = Other
VARIABLES:
Species (unitless)
Tank (unitless)
Treatment_pH (Treatment P H, unitless)
Treatment_feed (unitless)
Date_HST (unitless)
Calcification (milligrams per gram per day (mg/g/d))
Colony_number (unitless)
Nubbin_number (unitless)
Bleach_Status_2014 (unitless)
Collection_location (unitless)
latitude (degrees_north)
longitude (degrees_east)


[Coral clipping experiment - branching] - Branching data from a clipping experiment conducted on the coral Antillogorgia elisabethae at two sites in the Bahamas determined from June 1999 to June 2000 (Collaborative Research: Pattern and process in the abundance and recruitment of Caribbean octocorals)

This dataset results from an experiment in which colonies of the coral Antillogorgia elisabethae were clipped to simulate harvesting/disturbance at 2 sites in the Bahamas, one at Great Abaco and another at San Salvador Island. This dataset includes per capita branching ratio, number of new branches, and number of new branches per mother branch for colonies that were clipped to 10 or 4 branches or not clipped. Version 2 of this dataset, created on 2023-11-07, includes a correction to the latitude of the Abaco site.

cdm_data_type = Other
VARIABLES:
Location (unitless)
Latitude (degrees_north)
longitude (degrees_east)
Treatment (unitless)
SiteTreat (unitless)
Colony (unitless)
NewBranches (unitless)
OldBranches (unitless)
PerCapitaRatio (unitless)
NumberofMotherBranches (unitless)
MotherBranch (unitless)
NewDaughterBranches (unitless)


[Coral clipping experiment - growth] - Branch extension measurements from a clipping experiment conducted on the coral Antillogorgia elisabethae at two sites in the Bahamas determined from June 1999 to June 2000 (Collaborative Research: Pattern and process in the abundance and recruitment of Caribbean octocorals)

This dataset results from an experiment in which colonies of the coral Antillogorgia elisabethae were clipped to simulate harvesting/disturbance at 2 sites in the Bahamas, one at Great Abaco and another at San Salvador Island. This dataset includes branch extension measurements for colonies that were clipped to 10 or 4 branches or not clipped. Version 2 of this dataset, created on 2023-11-07, includes a correction to the latitude of the Abaco site.

cdm_data_type = Other
VARIABLES:
Location (unitless)
Latitude (degrees_north)
longitude (degrees_east)
Colony (unitless)
Treatment (unitless)
SiteTreat (unitless)
Branch_Number (unitless)
Growth_cm (centimeters (cm))
Jun_99 (centimeters (cm))
Jul_00 (centimeters (cm))
BranchType (unitless)


[Coral colony sequece accessions: Hidden resilience to recurrent bleaching] - RNA sequence accession numbers for coral colonies that displayed a strong bleaching phenotype at Ofu Island, American Samoa between 2015 and 2016. (Ecological, evolutionary and physiological responses of corals to a mass bleaching event in American Samoa)

RNA sequence accession numbers for coral colonies that displayed a strong bleaching phenotype at Ofu Island, American Samoa between 2015 and 2016. This dataset includes accession numbers for 36 RNAseq libraries housed at The National Center for Biotechnology Information (NCBI).

cdm_data_type = Other
VARIABLES:
sample (unitless)
colony (unitless)
species (uniless)
date (unitless)
year (unitless)
month (unitless)
bleaching_status (percent)
Accession (unitless)
Accession_link (unitless)


[Coral colony sequence accessions: The genomics of recovery from coral bleaching] - Coral colony genetic sequence accession numbers for samples collected from the lagoon environment of Ofu Island, American Samoa between 2011 and 2015. (Ecological, evolutionary and physiological responses of corals to a mass bleaching event in American Samoa)

Coral colony genetic sequence accessions for samples collected from the lagoon environment of Ofu Island in the National Park of American Samoa between 2011 and 2015.

cdm_data_type = Other
VARIABLES:
sample (unitless)
date (unitless)
colony (unitless)
bleaching_status (percent (%))
accession (unitless)
latitude (degrees_north)
longitude (degrees_east)
species (unitless)
accession_link (untiless)


[Coral cover from 1992-2019 in support of Edmunds and Perry (2023) MEPS] - Coral cover at six sites on the south coast of St. John, USVI from 1992 to 2019 (LTREB Long-term coral reef community dynamics in St. John, USVI: 1987-2019)

These data describe the percentage coral cover from 1992 to 2019 at the size study sites between Cabritte Horn and White Point using photoqudrats  as statistical replicates. The data support Fig. 3C in Edmunds and Perry (2023) and provide context to the study of changes in coral colony size, density, and G over time.

cdm_data_type = Other
VARIABLES:
Site (unitless)
Year (unitless)
Quadrat (unitless)
Coral_percent_cover (percent (%))
lat (decimal degrees)
lon (decimal degrees)


[Coral cover Jarvis] - Percent coral cover from photographic surveys conducted along Jarvis Island in 2015-2017 (Skeletal Records of Coral Reef Bleaching in the Central Equatorial Pacific)

This dataset contains percent coral cover which was collected from photographic surveys conducted along triplicate 50\u2009m transects spanning 5\u2009m to 25\u2009m depth on the east and west side of Jarvis Island (0.37\u00b0S, 159.99\u00b0W) in 2015, 2016, and 2017.

cdm_data_type = Other
VARIABLES:
transect_ID (unitless)
year (unitless)
latitude (degrees_north)
longitude (degrees_east)
depth (m)
pcnt_cover (percentage (%))
pcnt_cover_bleached (percentage (%))


[Coral disease mapping and site information] - Locations and depths of sites used in coral disease mapping from the Caribbean in 2012 (Contagious coral diseases project) (Are coral diseases contagious?)

Locations and depths of sites used in coral disease mapping from the Caribbean in 2012 (Contagious coral diseases project)

cdm_data_type = Other
VARIABLES:
site_location (unitless)
survey_date (unitless)
site_number (unitless)
depth_max (Depth, meters)
latitude (degrees_north)
longitude (degrees_east)


[coral dissepiment spacing] - Dissepiment spacing in Porites corals from Palmyra Atoll and Airai Bay, Palau (Can Coral Reefs in the Central Pacific Survive Ocean Warming? A 2015 El Nino Test)

Dissepiment spacing in Porites corals from Palmyra Atoll and Airai Bay, Palau.

cdm_data_type = Other
VARIABLES:
dataset (unitless)
site (unitless)
latitude (degrees_north)
longitude (degrees_east)
time (ISO Date Time UTC, seconds since 1970-01-01T00:00:00Z)
dissepiment_spacing (millimeters (mm))


[coral diversity and richness] - Coral and algae cover, coral richness, and coral diversity from coral reef sites sampled by small boats in the Palauan archipelago from 2011-2013 (An Investigation of the Role of Nutrition in the Coral Calcification Response to Ocean Acidification)

Average coral and algae cover, coral richness, and coral diversity from 8 coral reef sites in Palau.

cdm_data_type = Other
VARIABLES:
site_name (dimensionless)
latitude (degrees_north)
longitude (degrees_east)
omega_Ar (dimensionless)
omega_Ar_err (dimensionless)
coral_cover_pcnt (percent (%))
coral_cover_err (percent (%))
coral_richness (genera per transect)
coral_richness_err (genera per transect)
diversity (dimensionless)
diversity_err (dimensionless)
evenness (dimensionless)
evenness_err (dimensionless)
porites_cover_pcnt (percent (%))
porites_cover_err (percent (%))
acropora_cover_pcnt (percent (%))
acropora_cover_err (percent (%))
macroalgae_cover_pcnt (percent (%))
macroalgae_cover_err (percent (%))
cca_cover_pcnt (percent (%))
cca_cover_err (percent (%))


[coral growth 2016-2018] - Height, surface area, and mass of Pocillopora damicornis in Pacific Panama from spring 2016 - spring 2018 (Collaborative Research: Climate Change, Mesoscale Oceanography, and the Dynamics of Eastern Pacific Coral Reefs)

Height, surface area, and mass of Pocillopora damicornis in Pacific Panama from spring 2016 - spring 2018.

cdm_data_type = Other
VARIABLES:
UIN (unitless)
Gulf (unitless)
Site (unitless)
latitude (degrees_north)
longitude (degrees_east)
GrowthPeriod (Growth Period, unitless)
time2 (Time, unitless)
CoralID (Coral ID, unitless)
InitialHeight_Perp (Initial Height Perp, millimeters (mm))
InitialHeight_Long (Initial Height Long, millimeters (mm))
FinalHeight_Perp (Final Height Perp, millimeters (mm))
FinalHeight_Long (Final Height Long, millimeters (mm))
ChangeHeight_Perp (Change Height Perp, millimeters (mm))
ChangeHeight_Long (Change Height Long, millimeters (mm))
Initial_surface_area (square centimeters (cm2))
Final_surface_area (square centimeters (cm2))
InitialMass (Initial Mass, grams (g))
FinalMass (Final Mass, grams (g))
ChangeMass (Change Mass, grams (g))
InitialFieldHeight (Initial Field Height, millimeters (mm))
FinalFieldHeight (Final Field Height, millimeters (mm))
ChangeFieldHeight (Change Field Height, millimeters (mm))
Diff_InitH_FieldvPic (Diff Init H Fieldv Pic, millimeters (mm))
Diff_FinH_FieldvPic (Diff Fin H Fieldv Pic, millimeters (mm))
Diff_Change_FieldvPic (Diff Change Fieldv Pic, millimeters (mm))
Notes (unitless)


[coral growth 2019] - Height, width, and mass of the coral Pocillopora damicornis in Pacific Panama, 2018-2019 (Collaborative Research: Climate Change, Mesoscale Oceanography, and the Dynamics of Eastern Pacific Coral Reefs)

Height, surface area, and mass of Pocillopora damicornis in Pacific Panama at five time periods between March 2018 and March 2019.

cdm_data_type = Other
VARIABLES:
UIN (unitless)
Gulf (unitless)
Site (unitless)
latitude (degrees_north)
longitude (degrees_east)
GrowthPeriod (Growth Period, unitless)
CoralID (Coral ID, unitless)
InitialHeight_Perp (Initial Height Perp, millimeters (mm))
FinalHeight_Long (Final Height Long, millimeters (mm))
ChangeHeight_Long (Change Height Long, millimeters (mm))
Initial_Max_Width (millimeters (mm))
Final_Max_Width (millimeters (mm))
Initial_Trunk_Diam (millimeters (mm))
Final_Trunk_Diam (millimeters (mm))
InitialMass (Initial Mass, grams (g))
FinalMass (Final Mass, grams (g))
ChangeMass (Change Mass, grams (g))
Notes (unitless)


[coral growth dye experiment] - Results from experiment examining effects of 4 different dyes on growth rates of scleractinian corals; from the Cohen lab at WHOI in Woods Hole, MA (OA Nutrition and Coral Calcification project) (An Investigation of the Role of Nutrition in the Coral Calcification Response to Ocean Acidification)

Results from experiment examining effects of 4 different dyes on growth rates of scleractinian corals; from the Cohen lab at WHOI in Woods Hole, MA.

cdm_data_type = Other
VARIABLES:
treatment (dimensionless)
treatment_abbrev (dimensionless)
rel_growth_during_treatment (dimensionless)
rel_growth_post_treatment (dimensionless)


[coral growth isotope spike experiment] - Results from experiment examining effects of 2 different isotope spikes on growth rates of scleractinian corals; from the Cohen lab at WHOI in Woods Hole, MA (OA Nutrition and Coral Calcification project) (An Investigation of the Role of Nutrition in the Coral Calcification Response to Ocean Acidification)

Results from experiment examining effects of 2 different isotope spikes on growth rates of scleractinian corals; from the Cohen lab at WHOI in Woods Hole, MA.

cdm_data_type = Other
VARIABLES:
treatment (dimensionless)
growth_rate_pre (dimensionless)
growth_rate_post (dimensionless)


[Coral health status and DNA concentration] - Health status and species of each coral sample taken in the Caribbean during 2013 (Contagious coral diseases project) (Are coral diseases contagious?)

Health status and species of each coral sample taken in the Caribbean during 2013 (Contagious coral diseases project)

cdm_data_type = Other
VARIABLES:
species (unitless)
health_status (unitless)
date_sampled (unitless)
date_tissue_airbrush (unitless)
date_DNA_extraction (unitless)
sample_number (unitless)
DNA_conc (ng mL -1)


[Coral iCA Activity] - Internal carbonic anhydrase activity in three species of coral collected from the Florida Keys in August 2013 (Ocean Acidification: Coral Inorganic Carbon Processing in Response to Ocean Acidification)

Internal carbonic anhydrase activity in three species of coral collected from the Florida Keys in August 2013.

cdm_data_type = Other
VARIABLES:
Species (unitless)
Sample (unitless)
kif (/s)
latitude (degrees_north)
longitude (degrees_east)
time (Collection Date, seconds since 1970-01-01T00:00:00Z)


[Coral lesion frequencies and sizes after fish feces treatment] - Lesion frequencies and sizes after fish feces treatment on coral samples collected on the north shore of Mo’orea, French Polynesia, Oct 2020 to Jun 2021 (CAREER: Testing the effects of predator-derived feces on host symbiont acquisition and health)

This datafile contains frequencies and sizes (number of polyps killed) developed in coral tissues after the application and removal of fish feces to test whether fish from different guilds affect coral health in distinct ways.There were five treatments: fresh feces from a corallivorous butterflyfish (FC); fresh feces from a grazer/detritivore (FG); sterilized feces from a corallivorous butterflyfish (SC); sterilized feces from a grazer/detritivore (SG); no-feces control (C). For the fresh feces treatments (FC, FG), we applied 100 µl of fresh feces isolated from the hindgut of the butterflyfish Chaetodon ornatissimus (FC) or the grazer/detritivore Ctenochaetus striatus (FG) directly onto each coral fragment. For the sterilized feces treatments (SC, SG), fecal pellets were sterilized in a pressure cooker for 40 minutes at 120°C and then applied in the same manner as fresh feces. The experiment ran for ~22 hours. The experiment was conducted in three iterations in Mo'orea, French Polynesia, over two years (2020, 2021).

cdm_data_type = Other
VARIABLES:
Sample_ID (unitless)
Collection_Date (unitless)
Experiment (unitless)
Treatment (unitless)
Colony (unitless)
Replicate (unitless)
Health (unitless)
Dead_Polyps (unitless)


[Coral physiological measurements] - Montipora capitata and Porites compressa Physiological Measurements for Experimental Corals and Parent Colonies from 2014-2015 (RAPID Hawaii project) (Will corals recover from bleaching under ocean acidification conditions?)

Physiological data for Montipora capitata and Porites compressa: endosymbiont cell density (cells cm-2), Contribution of Total Carbon to Animal Respiration (CTAR, %), calcification (mg day-1 cm-2), biomass (g cm-2), total lipids (J gdw-1), photosynthesis and respiration (µmol hr-1 cm-2), Contribution of Zooxanthellae (Symbiodiniaceae) to Animal Respiration (CZAR, %), feeding rate (brine shrimp hr-1 cm-2), and Contribution of Heterotrophy to Animal Respiration (CHAR, %). Measurements for experimental corals were taken from one of three time points (November 2015, June 2014, or December 2015).

cdm_data_type = Other
VARIABLES:
Species (unitless)
Collection_site (unitless)
latitude (Latitude_decimal_degrees, degrees_north)
longitude (Longitude_decimal_degrees, degrees_east)
Lat (degrees_north)
Long (degrees_east)
Colony (unitless)
Sample_ID (unitless)
Health_status (unitless)
pH (unitless)
Feeding_status (unitless)
Treatment (unitless)
Tank (unitless)
Time_point (unitless)
Endo_density (cells cm-2)
Calc (mg day-1 cm-2)
Total_biomass (g cm-2)
Total_lipids (J gdw-1)
Gross_P (umol O2 min-1 cm-2)
LEDR (unitless)
CZAR (unitless)
FR (Brine shrimp hr-1 cm-2)
CHAR (unitless)
CTAR (unitless)


[Coral pyrosequencing data] - Microbial communities of corals analyzed using 454 Illumina pyrosequencing from Wonderland Reef, Florida in 2013 (Are coral diseases contagious?)

Microbial communities of corals analyzed using 454 Illumina pyrosequencing from Wonderland Reef, Florida in 2013

cdm_data_type = Other
VARIABLES:
organism (unitless)
measurement (unitless)
taxon_level (unitless)
taxon (unitless)
D4U (D4 U, percent or count)
D13U (D13 U, percent or count)
D27U (D27 U, percent or count)
Y11U (Y11 U, percent or count)
Y26U (Y26 U, percent or count)
Y27U (Y27 U, percent or count)
D1L (D1 L, percent or count)
D3L (D3 L, percent or count)
D22L (D22 L, percent or count)
Y4L (Y4 L, percent or count)
Y23L (Y23 L, percent or count)
Y9L (Y9 L, percent or count)
D1U (D1 U, percent or count)
D3U (D3 U, percent or count)
D22U (D22 U, percent or count)
Y4U (Y4 U, percent or count)
Y23U (Y23 U, percent or count)
Y9U (Y9 U, percent or count)


[Coral recruits] - Density of coral recruits in and out of MPAs in Viti Levu, Fiji from 2010 to 2012 (Killer Seaweeds project) (Killer Seaweeds: Allelopathy against Fijian Corals)

Density of coral recruits in and out of MPAs in Viti Levu, Fiji from 2010 to 2012 (Killer Seaweeds project)

cdm_data_type = Other
VARIABLES:
status (unitless)
site (unitless)
plot (unitless)
transects (count)


[Coral reef seawater microbial communities] - Diel, daily, and spatial variation of coral reef seawater microbial communities from US Virgin Islands, 2017 (Signature exometabolomes of Caribbean corals and influences on reef picoplankton)

Bacterial and archaeal diversity and composition, microbial cell abundances, inorganic nutrient concentrations, and physicochemical conditions were determined and measured in coral reef seawater over a three-day, diel time series on one reef in St. John, U.S. Virgin Islands.

cdm_data_type = Other
VARIABLES:
Sample_ID (unitless)
NCBI_BioProject_accession_number (NCBI Bio Project Accession Number, unitless)
NCBI_BioSample_accession_number (NCBI Bio Sample Accession Number, unitless)
Sample_type (unitless)
Coral_Colony_or_sand (unitless)
Collection_time (unitless)
Collection_Date (unitless)
Collection_location (unitless)
latitude (degrees_north)
longitude (degrees_east)
Prochlorococcus_cells_mL (Prochlorococcus Cells M L, cell/milliliter)
Synechococcus_cells_mL (Synechococcus Cells M L, cell/milliliter)
Picoeukaryotes_cells_mL (Picoeukaryotes Cells M L, cell/milliliter)
Unpigmented_cells_cells_mL (Unpigmented Cells Cells M L, cell/milliliter)
Phosphate_uM (Mass Concentration Of Phosphate In Sea Water, micromoles)
Silicate_uM (Mass Concentration Of Silicate In Sea Water, micromoles)
Nitrate_uM (Mole Concentration Of Nitrate In Sea Water, micromoles)
Nitrite_uM (Mole Concentration Of Nitrite In Sea Water, micromoles)
Ammonium_uM (Mole Concentration Of Ammonium In Sea Water, micromoles)
Temperature_F (degrees Fahrenheit)
Depth_Feet (Depth, feet)
Relative_light_levels (lumens/foot^2)


[Coral settlement] - Porites astreoides coral settlement counts collected in July of 2017 from an in situ larval coral settlement experiment in St. John, US Virgin Islands (Coral Chorus: The Role of Soundscapes in Coral Reef Larval Recruitment and Biodiversity)

Brooding coral Porites astreoides colonies were collected on St. John, U.S. Virgin Islands on June 22nd, 2017 and used in an in-situ larval coral settlement experiment. Settlement counts were taken on June 28th, 2017.

cdm_data_type = Other
VARIABLES:
Sample_ID (unitless)
Site (unitless)
latitude (degrees_north)
longitude (degrees_east)
Cup_ID (unitless)
Treatment (unitless)
Date_examined (unitless)
Time_examined (unitless)
Larvae_settled_clay (per individual)
Larvae_settled_red_ziptie (per individual)
Larvae_settled_cup (per individual)
Swimming_in_water (per individual)
Unsettled_on_clay (per individual)
Notes (unitless)


[Coral trait variation] - Growth and chlorophyll density of individual fragments of the coral Porites divaricata measured during a reciprocal transplant experiment conducted at three sites in Turneffe Atoll, Belize from February to July 2022 (OCE-PRF: Drivers of phenotypic diversity and adaptation in asexually propagating coral populations)

We sought to investigate the role of genetic, intra-clonal, and environmental variation in driving variation in fitness-related traits in the Caribbean thin finger coral, Porites divaricata (Taxonomy ID: 262287). We conducted a reciprocal transplant experiment whereby fragments from individual coral colonies of known genetic background were transplanted to three sites from February to July 2022. These sites included two mangrove sites and one reef site at Calabash Caye, Turneffe Atoll, Belize. Prior to and post-transplanting, fragments were measured to determine growth rate over this time. Coral fragments were also photographed to determine red channel intensity, which serves as a proxy for chlorophyll density.

This dataset contains the measures of these two coral traits (coral fragment growth and chlorophyll density (red channel intensity)) for each coral individual and also contains metadata about the genotype, origin site, transplanted site, rope at transplanted site, and age.

A related dataset contains environmental information about each transplanted site over this time period, based on loggers that recorded temperature and light levels. Data were collected by scientists at the University of Texas at Austin and the University of Belize.

cdm_data_type = Other
VARIABLES:
sample (unitless)
origin (unitless)
clone (unitless)
subclone (unitless)
longitude (Sublcone_longitude, degrees_east)
subclone_latitude (degrees_north)
trans_site (unitless)
rope (unitless)
loc_grtn (unitless)
age2 (years)
grtn (unitless)
loc (unitless)
... (6 more variables)


[Coral transplant site environmental data] - Temperature and light intensity measured at each transplant site during a reciprocal transplant experiment conducted at three sites in Turneffe Atoll, Belize from February to July 2022 (OCE-PRF: Drivers of phenotypic diversity and adaptation in asexually propagating coral populations)

We sought to investigate the role of genetic, intra-clonal, and environmental variation in driving variation in fitness-related traits in the Caribbean thin finger coral, Porites divaricata (Taxonomy ID: 262287). We conducted a reciprocal transplant experiment whereby fragments from individual coral colonies of known genetic background were transplanted to three sites from February to July 2022. These sites included two mangrove sites and one reef site at Calabash Caye, Turneffe Atoll, Belize. Prior to and post-transplanting, fragments were measured to determine growth rate over this time. Coral fragments were also photographed to determine red channel intensity, which serves as a proxy for chlorophyll density.

This dataset contains environmental information about each transplanted site over this time period, based on loggers that recorded temperature and light levels. This data was collected by scientists at the University of Texas at Austin and the University of Belize.

A related dataset contains the measures of these two coral traits (coral fragment growth and chlorophyll density (red channel intensity)) for each coral individual and also contains metadata about the genotype, origin site, transplanted site, rope at transplanted site, and age.

cdm_data_type = Other
VARIABLES:
Logger (unitless)
Site (unitless)
ISO_DateTime_Local (unitless)
time (Iso_datetime_utc, seconds since 1970-01-01T00:00:00Z)
Temp (degrees Celsius)
Light (photosynthetic photon flux density (PPFD))
Site_Lat (degrees_north)
longitude (Site_lon, degrees_east)


[Coral-bacterioplankton data from mesocosm experiments] - Bacterioplankton data from coral and coral mucus aquaria experiments conducted at Bermuda Institute of Ocean Sciences in 2013 (Fundamental Coral-Microbial Associations)

Bacterioplankton data from coral and coral mucus aquaria experiments conducted at Bermuda Institute of Ocean Sciences in 2013

cdm_data_type = Other
VARIABLES:
treatment (unitless)
treatment_description (unitless)
tank (unitless)
mesocosm (unitless)
timepoint_name (days)
timepoint_days (days)
temp (Temperature, celsius)
salinity (Sea Water Practical Salinity, ppt)
DAPI_count (cells per milliliter)
accession_number (unitless)
nonPigmentPico (Non Pigment Pico, cells per milliliter)
synechococcus (cells per milliliter)
picoeukaryote (cells per milliliter)
lowHeterotrophicBac (Low Heterotrophic Bac, cells per milliliter)
highHeterotrophicBac (High Heterotrophic Bac, cells per milliliter)
SAR11 (cells per milliliter)
rhodobacteracea (cells per milliliter)
alteromonas (cells per milliliter)
vibrio (cells per milliliter)
thaumarchaeota (cells per milliliter)
euryarchaeota (cells per milliliter)
P04 (micromoles)
N03_N02 (micromoles)
Si04 (micromoles)
N02 (micromoles)
NH4 (Mole Concentration Of Ammonium In Sea Water, micromoles)
... (9 more variables)


[CoralLesion_Surveys] - Photoquadrat surveys of coral lesions at two sites on the backreef of Cook’s Bay in Moorea, French Polynesia from May through July 2012 (Spatial patterns of coral-vermetid interactions: short-term effects and long-term consequences)

4 central corals were chosen at two sites on the backreef on either side of Cook\u2019s Bay in Moorea, French Polynesia.  At each central coral, 4 transects were run in the cardinal directions, and 10 random locations photographed along the transect using a camera mounted to a .25m2 quadrat.  Technicians then circled all scars in the photographs, and recorded the summary statistics presented in this dataset.

cdm_data_type = Other
VARIABLES:
Density (count per centimeter squared (#/cm2))
Area (centimeter squared (cm2))
Perimeter (centimeters (cm))
Area_Perimiter (centimeter (cm))
NN (centimeter (cm))
Num_Scars (count)
Damaged_Area (centimeter squared (cm2))
Coral_Area (centimeter squared (cm2))
Point_Pattern (unitless)
Site (unitless)
Tech (unitless)
latitude (degrees_north)
longitude (degrees_east)


[Coralliophila_GrowthMorphology] - Coral growth and morphology based on snail presence from experiments in Moorea, French Polynesia from May, 2013 through May, 2014 (Spatial patterns of coral-vermetid interactions: short-term effects and long-term consequences)

12 corals were selected with Coralliophila violacea.  A random snail was selected, and a similar location identified on the coral for comparison.  At each location, a 20cm by 20cm plexiglass plate was placed against the coral, and 20 randomly selected depth measurements taken.  The variance of those measurements is reported.  A nail was then hammered into the coral at each location, and the length recorded.   After 1 year, the corals were revisited, and the measurements repeated to calculate change in nail length (coral linear extension) and change in morphology (change in variance of depth measurements).

cdm_data_type = Other
VARIABLES:
Coral (unitless)
Treatment (unitless)
Variance (square centimeters (cm2))
Growth (centimeters (cm))
longitude (degrees_east)
latitude (degrees_north)


[Core samples: Infauna abundance] - Infauna abundance from seagrass bed core samples collected in Back Sound, North Carolina in June and July of 2013 (Collaborative Research: Habitat fragmentation effects on fish diversity at landscape scales: experimental tests of multiple mechanisms)

Infauna abundance from seagrass bed core samples collected in Back Sound, North Carolina in June and July of 2013.

cdm_data_type = Other
VARIABLES:
Site (unitless)
Date (unitless)
Replicate (unitless)
latitude (degrees_north)
longitude (degrees_east)
depth (m)
Solemya_velum (count)
Ensis_directus (count)
Ensis_minor (count)
Modiolus_modiolus (count)
Macoma_tenta_Macoma_sp (count)
Nucula_proxima (count)
Caryocorbula_contracta (count)
Cumingia_tellinoides (count)
Dallocardia_muricata (count)
Lyonsia_hyalina (count)
Brachidontes_exustus (count)
Mytilus_edulis (count)
Modiolus_squamosus (count)
Anadara_transversa (count)
Lucina_multilineata (count)
Laevicardium_mortoni (count)
Anadara_brasiliana (count)
Abra_lioica (count)
Argopecten_gibbus (count)
Parvilucina_crenella (count)
... (79 more variables)


[Core samples: Infauna biomass] - Infauna biomass from seagrass bed core samples collected in Back Sound, North Carolina in June and July of 2013 (Collaborative Research: Habitat fragmentation effects on fish diversity at landscape scales: experimental tests of multiple mechanisms)

Infauna biomass from seagrass bed core samples collected in Back Sound, North Carolina in June and July of 2013.

cdm_data_type = Other
VARIABLES:
Site (unitless)
Date (unitless)
Replicate (unitless)
latitude (degrees_north)
longitude (degrees_east)
depth (m)
Solemya_velum (grams(g))
Ensis_directus (grams(g))
Ensis_minor (grams(g))
Modiolus_modiolus (grams(g))
Macoma_tenta_Macoma_sp (grams(g))
Nucula_proxima (grams(g))
Caryocorbula_contracta (grams(g))
Cumingia_tellinoides (grams(g))
Dallocardia_muricata (grams(g))
Lyonsia_hyalina (grams(g))
Brachidontes_exustus (grams(g))
Mytilus_edulis (grams(g))
Modiolus_squamosus (grams(g))
Anadara_transversa (grams(g))
Lucina_multilineata (grams(g))
Laevicardium_mortoni (grams(g))
Anadara_brasiliana (grams(g))
Abra_lioica (grams(g))
Argopecten_gibbus (grams(g))
Parvilucina_crenella (grams(g))
... (79 more variables)


[Core samples: Seagrass] - Seagrass (Zostera marina and Halodule wrightii) shoot count, biomass and shoot height from seagrass bed core samples collected in Back Sound, North Carolina in June and July of 2013 (Collaborative Research: Habitat fragmentation effects on fish diversity at landscape scales: experimental tests of multiple mechanisms)

Seagrass (Zostera marina and Halodule wrightii) shoot count, biomass and shoot height from seagrass bed core samples collected in Back Sound, North Carolina in June and July of 2013.

cdm_data_type = Other
VARIABLES:
Site (unitless)
Date (unitless)
Replicate (unitless)
latitude (degrees_north)
longitude (degrees_east)
depth (m)
Zos_shoot_count (count (shoots))
Zos_biomass_g (grams (g))
Mean_zos_height_mm (millimeters (mm))
Hal_shoot_count (count (shoots))
Hal_biomass_g (grams (g))
Mean_hal_height_mm (millimeters (mm))


[Core stress bands] - Stress bands in coral cores for corals from Palau reefs (Constraining Thermal Thresholds and Projections of Temperature Stress on Pacific Coral Reefs Over the 21st Century: Method Refinement and Application)

Stress bands in coral cores for corals from Palau reefs.

cdm_data_type = Other
VARIABLES:
reef_type (unitless)
site (unitless)
latitude (degrees_north)
longitude (degrees_east)
coral_id (unitless)
date_collected (unitless)
date_range (unitless)
stress_band_1998 (unitless)
stress_band_2010 (unitless)


[COVID Galapagos Megafauna Sizes] - Body size measurements of megafauna species at 6 sites after the 2020 COVID lockdown in the Galapagos Islands from 2020-2021 (Galapagos diver disturbance project) (RAPID: Illuminating the effects of a COVID-19 elimination of diver disturbance on reef fish behavior, distribution and ecosystem functioning in the Galapagos Marine Reserve)

The effect of changing levels of scuba diver disturbance, from a low during the 2020 COVID 19 lockdown to normal levels nearly a year later (July - August 2021) on the body sizes of  6 species of marine megafauna (sharks, sea lions and rays) was sampled to test the hypothesis the megafauna community would differ between the lockdown and post-lock down period 1 year later.  These data are from the period after the COVID 19 lockdown in July-August 2021.

The presence and size of the megafauna was recorded by extended duration video cameras that recorded from a fixed position at 12-15 m depth at each of the 6 sites. These were GoPro7 cameras in an aluminum housing with a battery pack to enable 6-8 hrs of continuous video recording. All megafauna species seen within 5 meters distance from the camera were identified to species. Total body lengths of megafauna were estimated within 5 cm increments by comparing them to known size indicators in the videos.

These data were collected by Drs Robert Lamb, Jon Witman and Franz Smith. Rebecca Ward-Diorio worked up the data from the GoPro files.  The GoPro file names are provided for reference. Day trips to support scuba based research on board the MV Valeska, a 14 m long fiberglass boat. Various trips between October 1, 2020 to August 31, 2021, with Jon Witman as Chief Scientist

cdm_data_type = Other
VARIABLES:
Site (unitless)
Site_Latitude (degrees_north)
longitude (Site_longitude, degrees_east)
Date (unitless)
GoPro_Video_File_name (unitless)
Species_Code (unitless)
Total_body_length (cm)


[cp_decibels] - Acoustic backscatter data in relative decibels (one of three related datasets) from the AL9801 cruise on the R/V Albatross IV in the Gulf of Maine and Georges Bank in 1998 (GB project) (U.S. GLOBEC Georges Bank)

Acoustic backscatter data in relative decibels (one of three related datasets) from the AL9801 cruise on the R/V Albatross IV in the Gulf of Maine and Georges Bank in 1998 (GLOBEC-Georges Bank project)

cdm_data_type = Other
VARIABLES:
decibel_returns_1 (volts)
decibel_returns_2 (volts)
decibel_returns_3 (volts)
decibel_returns_4 (volts)
decibel_returns_5 (volts)
decibel_returns_6 (volts)
decibel_returns_7 (volts)
decibel_returns_8 (volts)
decibel_returns_9 (volts)
decibel_returns_10 (volts)
decibel_returns_11 (volts)
decibel_returns_12 (volts)
decibel_returns_13 (volts)
decibel_returns_14 (volts)
decibel_returns_15 (volts)
decibel_returns_16 (volts)
decibel_returns_17 (volts)
decibel_returns_18 (volts)
decibel_returns_19 (volts)
decibel_returns_20 (volts)


[cp_depths] - Acoustic backscatter depth data in meters (one of three related datasets) from the AL9801 cruise on the R/V Albatross IV in the Gulf of Maine and Georges Bank in 1998 (GB project (U.S. GLOBEC Georges Bank)

Acoustic backscatter depth data in meters (one of three related datasets) from the AL9801 cruise on the R/V Albatross IV in the Gulf of Maine and Georges Bank in 1998 (GLOBEC-Georges Bank project).

cdm_data_type = Other
VARIABLES:
depth (m)


[cp_lat_lon] - Longitude and Latitude data to accompany acoustic backscatter data (one of three related datasets) from the AL9801 cruise on the R/V Albatross IV in the Gulf of Maine and Georges Bank in 1998 (GB project) (U.S. GLOBEC Georges Bank)

Longitude and Latitude data to accompany acoustic backscatter data (one of three related datasets) from the AL9801 cruise on the R/V Albatross IV in the Gulf of Maine and Georges Bank in 1998 (GLOBEC-Georges Bank project).

cdm_data_type = Other
VARIABLES:
latitude (degrees_north)
longitude (degrees_east)


[CPR plankton abundance in the WN Atlantic 1958-2021] - Continous Plankton Recorder phytoplankton and zooplankton occurrence and count data from The CPR Survey in the Western North Atlantic Ocean from 1958 to 2021 (The Continuous Plankton Recorder (CPR) Survey: Monitoring the Plankton of the North Atlantic)

This dataset includes Continous Plankton Recorder (CPR) phytoplankton and zooplankton abundance (occurrence and count) data from the Marine Biological Association of the UK, the CPR Survey, in the Western North Atlantic Ocean from 1958-2021 inclusive.

cdm_data_type = Other
VARIABLES:
SampleId (unitless)
latitude (degrees_north)
longitude (degrees_east)
time (Midpoint_date_utc, seconds since 1970-01-01T00:00:00Z)
Year (year)
Month (month)
Day (day)
Hour (hour)
id_40 (individuals per 3 cubic meter sample)
id_41 (individuals per 3 cubic meter sample)
id_42 (individuals per 3 cubic meter sample)
id_43 (individuals per 3 cubic meter sample)
id_44 (individuals per 3 cubic meter sample)
id_45 (individuals per 3 cubic meter sample)
id_47 (individuals per 3 cubic meter sample)
id_48 (individuals per 3 cubic meter sample)
id_50 (individuals per 3 cubic meter sample)
id_51 (individuals per 3 cubic meter sample)
id_53 (individuals per 3 cubic meter sample)
id_55 (individuals per 3 cubic meter sample)
id_56 (individuals per 3 cubic meter sample)
id_57 (individuals per 3 cubic meter sample)
id_58 (individuals per 3 cubic meter sample)
id_59 (individuals per 3 cubic meter sample)
id_60 (individuals per 3 cubic meter sample)
... (397 more variables)


[CPR plankton occurrence 2014-2019] - Continous Plankton Recorder phytoplankton and zooplankton occurrence and count data from The CPR Survey in the North Atlantic Ocean from 2014 to 2019 (The Continuous Plankton Recorder (CPR) Survey: Monitoring the Plankton of the North Atlantic)

Continous Plankton Recorder phytoplankton and zooplankton occurrence and count data from the Marine Biological Association of the UK, the CPR Survey, in the North Atlantic Ocean from Jan. 2014 to Jan. 2019.

cdm_data_type = Other
VARIABLES:
time (Event ISO Date Time UTC, seconds since 1970-01-01T00:00:00Z)
eventID (Event ID, unitless)
modified_ISO_DateTime_UTC (Modified ISO Date Time UTC, unitless)
rightsHolder (Rights Holder, unitless)
institutionID (Institution ID, unitless)
datasetName (Dataset Name, unitless)
sampleSizeUnit (Sample Size Unit, meters^3)
sampleSizeValue (Sample Size Value, unitless)
fieldNumber (Field Number, unitless)
depth (Maximum Depth In Meters, m)
minimumDepthInMeters (Minimum Depth In Meters, meters)
latitude (degrees_north)
longitude (degrees_east)
geodeticDatum (Geodetic Datum, unitless)
basisOfRecord (Basis Of Record, unitless)
taxonID (Taxon ID, unitless)
scientificNameID (Scientific Name ID, unitless)
scientificName (Scientific Name, unitless)
occurrenceID (Occurrence ID, unitless)
catalogNumber (Catalog Number, unitless)
individualCount (Individual Count, unitless)


[Cr concentration and isotope data using dissolved Cr and different Cr species from RR1805] - Chromium (Cr) concentration and isotope data determined using dissolved Cr and different Cr species from samples collected on R/V Roger Revelle cruise RR1805 in April-May 2018 (Cr Isotope Oceanography of the Eastern Tropical North Pacific Ocean)

Changes in chromium (Cr) isotope ratios due to fractionation between trivalent (Cr(III)) and hexavalent (Cr(VI)) are being utilized by geologists to infer oxygen conditions in past environments. But there is little information available on Cr in the modern ocean to ground-truth these inferences. Transformations between the two chromium redox species are important processes in oceanic Cr cycling. Here we present profiles of hexavalent and trivalent Cr concentrations and stable isotope ratios from the Eastern Tropical North Pacific (ETNP) oxygen deficient zone (ODZ) which support theoretical and experimental studies that predict that lighter Cr is preferentially reduced in low oxygen environments, and that residual dissolved Cr becomes heavier due to removal of particle-reactive Cr(III) on sinking particles. The Cr(III) maximum dominantly occurs in the upper portion of the ODZ, implying that microbial activity (dependent on the sinking flux of organic matter) may be the dominant mechanism for this transformation, rather than a simple inorganic chemical conversion between the species depending on the redox potential.

cdm_data_type = Other
VARIABLES:
Cruise (unitless)
Station (unitless)
Latitude (degrees_north)
longitude (degrees_east)
depth (m)
Total_dissolved_Cr (nanomoles per kilogram (nmol/kg))
Total_dissolved_d53Cr (permil (‰))
CrIII (nanomoles per kilogram (nmol/kg))
d53CrIII (permil (‰))
CrIII_pcnt_of_total (percent (%))
Calculated_CrVI (nanomoles per kilogram (nmol/kg))
Calculated_d53CrVI (permil (‰))
Measured_CrVI (nanomoles per kilogram (nmol/kg))
Measured_d53Cr (permil (‰))


[Cr concentration and isotopic composition of Cr(III) and Cr(VI) in the ETNP from RR1804-05 and KM1919-20] - Chromium concentration and isotopic composition of Cr(III) and Cr(VI) in the Eastern Tropical North Pacific from samples collected on R/V Roger Revelle and R/V Kilo Moana in April-May 2018 and Sept-Oct 2019 (Cr Isotope Oceanography of the Eastern Tropical North Pacific Ocean)

Understanding the cycling of chromium (Cr) and how chromium stable isotopes (δ53Cr) are altered in response to different processes in the modern ocean is important in our interpretation of marine sedimentary δ53Cr records, a promising redox proxy. Therefore, it is crucial to investigate the geochemical processes of Cr in reducing environments such as oxygen deficient zones (ODZs). In this study, we investigated the cycling of Cr in the Eastern Tropical North Pacific (ETNP) ODZ by analyzing the [Cr] and δ53Cr of total dissolved Cr and Cr(III). Our Cr(III) data at two inshore stations shows profile features and Cr reduction isotopic fractionation factor (-1.5‰) similar to an offshore station in a previous study. We also observed significant Cr scavenging signals in the upper 1000 meters (m) throughout the ODZ with an inshore-offshore variability in its magnitude. Specifically, anoxic bottom waters on the continental slope see the greatest Cr scavenging with heaviest δ53Cr (+1.85‰). Our estimates of the scavenged Cr isotopic composition are within error of the anoxic and euxinic marine sedimentary δ53Cr. This implies that the vertical transport of Cr to the seafloor and subsequent diagenesis may not generate significant isotopic fractionation for Cr. This is the first thorough investigation into the Cr cycling in the ETNP ODZ and demonstrated promising usage of marine sedimentary δ53Cr as a redox proxy for ancient oceans.

In the ODZ, oxygen is consumed by degrading sinking particles and reaches extremely low levels (too low to support aerobic life) from 100m to 800m depth. However, microbes that can use other oxidants such as nitrate to metabolize organic carbon live there, and we showed that they also convert soluble anionic chromate Cr(VI) to cationic Cr(III), about half of which is scavenged onto sinking particles and removed to the seafloor. This reduction is accompanied by preferential reduction of light Cr isotopes, so the Cr(III) is 1.3‰ lighter than the source Cr(VI). The removal of part of this light Cr(III) by scavenging leaves the residual total Cr heavier than the source Cr. The analyzed samples listed here were chosen to be from the center and margins of the ETNP ODZ and over extremely reducing continental margin sediments.

cdm_data_type = Other
VARIABLES:
Cruise (unitless)
Station (unitless)
Latitude (degrees_north)
... (9 more variables)


[CR1994_met] - Mooring meteorological data from the Georges Crest mooring on Georges Bank from Oct. 1994 - Jan. 1995 (U.S. GLOBEC Georges Bank)

Mooring meteorological data from the Georges Crest mooring on Georges Bank from Oct. 1994 - Jan. 1995

cdm_data_type = Other
VARIABLES:
year_start
brief_desc
latitude (degrees_north)
longitude (degrees_east)
depth (m)
hour_gmt (whole hours)
minute_gmt (whole minutes)
seconds_gmt (decimal seconds)
day_gmt
month_gmt
year
julian_day (decimal day)
flvolt (volts)
trans (percent)
par_scalar (microEinstein/meter^2/second)
cond (seimens/meter)
sigma_0 ((kg/m^3))
sal
temp (Temperature, decimal deg. C)
temp_air (decimal deg. C)


[CR1994_T_S] - Mooring temperature, salinity, fluor data from the Georges Crest mooring on Georges Bank  from Oct. 1994 - Jan. 1995 (U.S. GLOBEC Georges Bank)

Mooring temperature, salinity, fluor data from the Georges Crest mooring on Georges Bank  from Oct. 1994 - Jan. 1995

cdm_data_type = Other
VARIABLES:
year_start
brief_desc
latitude (degrees_north)
longitude (degrees_east)
depth (m)
hour_gmt (whole hours)
minute_gmt (whole minutes)
seconds_gmt (decimal seconds)
day_gmt
month_gmt
year
julian_day (decimal day)
flvolt (volts)
trans (percent)
par_scalar (microE/m^2/second)
cond (seimens/meter)
sigma_0 ((kg/m^3))
sal
temp (Temperature, decimal deg. C)
temp_air (decimal deg. C)


[CR1995_bio_opt] - Mooring bio-optical data from the Georges Crest mooring on Georges Bank from Apr - Sept. 1995 (U.S. GLOBEC Georges Bank)

Mooring bio-optical data from the Georges Crest mooring on Georges Bank from Apr - Sept. 1995

cdm_data_type = Other
VARIABLES:
year_start
brief_desc
latitude (degrees_north)
longitude (degrees_east)
depth (m)
hour_gmt (whole hours)
minute_gmt (whole minutes)
seconds_gmt (decimal seconds)
day_gmt
month_gmt
year
julian_day (decimal day)
flvolt (volts)
trans (percent)
par_scalar (microEinstein/meter^2/second)
cond (seimens/meter)
sigma_0 ((kg/m^3))
sal
temp (Temperature, decimal deg. C)
temp_air (decimal deg. C)


[CR1995_met] - Mooring meteorological data from the Georges Crest mooring Crest on Georges Bank from Apr - Sept. 1995 (U.S. GLOBEC Georges Bank)

Mooring meteorological data from the Georges Crest mooring Crest on Georges Bank from Apr - Sept. 1995

cdm_data_type = Other
VARIABLES:
year_start
brief_desc
latitude (degrees_north)
longitude (degrees_east)
depth (m)
hour_gmt (whole hours)
minute_gmt (whole minutes)
seconds_gmt (decimal seconds)
day_gmt
month_gmt
year
julian_day (decimal day)
flvolt (volts)
trans (percent)
par_scalar (microEinstein/meter^2/second)
cond (seimens/meter)
sigma_0 ((kg/m^3))
sal
temp (Temperature, decimal deg. C)
temp_air (decimal deg. C)


[Crab Tethering] - Tethering experiments on introduced crab conducted in several bays along the Central California coast in 2015 (RAPID: A rare opportunity to examine overcompensation resulting from intensive harvest of an introduced predator)

Tethering data for introduced crab for 2015. Experiments were conducted in several bays along Central California coast, shallow subtidal (<3 m depth).

cdm_data_type = Other
VARIABLES:
bay (unitless)
site (unitless)
latitude (degrees_north)
longitude (degrees_east)
date_collected (unitless)
size (millimeters (mm))
sex (unitless)
outcome (unitless)


[CRANE: fDOM, DOC, and TP] - Concentrations of colored dissolved organic matter, dissolved organic carbon, and total phosphorous from experiments conducted at the University of Hawaii, Manoa in 2015 (Coral DOM2) (Collaborative Research: Dissolved organic matter feedbacks in coral reef resilience: The genomic & geochemical basis for microbial modulation of algal phase shifts)

Concentrations of colored dissolved organic matter, dissolved organic carbon, and total phosphorous from experiments conducted at the University of Hawaii, Manoa in 2015.

cdm_data_type = Other
VARIABLES:
Major_Benthic_Constituent (unitless)
Nutrient_Addition (unitless)
Water_Bath (unitless)
Week (unitless)
Ultra_Violet_Humic_like (Raman units of water (RU))
Marine_Humic_like (Raman units of water (RU))
Visible_Humic_like (Raman units of water (RU))
Tryptophan_like (Raman units of water (RU))
Tyrosine_like (Raman units of water (RU))
Phenylalanine_like (Raman units of water (RU))
Proteinaceous_fDOM (Proteinaceous F DOM, Raman units of water (RU))
Humic_like_fDOM (Humic Like F DOM, Raman units of water (RU))
TP_avg (micromoles per liter (µmol L-1))
DOC (micromoles per liter (µmol L-1))


[Crassostrea virginica gonad MBD-BSseq] - Eastern oyster gonad methylation patterns in response to experimental ocean acidification (Collaborative Research: Does ocean acidification induce a methylation response that affects the fitness of the next generation in oysters?)

Eastern oyster gonad methylation patterns in response to experimental ocean acidification at pCO2 levels 400 and 2800 ppm. Oysters were collected from an intertidal oyster reef in Plum Island Sound, MA, Gulf of Maine in mid-July 2016. This dataset includes GenBank BioProject PRJNA513384 metadata.

cdm_data_type = Other
VARIABLES:
bioproject_accession (unitless)
biosample_accession (unitless)
library_ID (unitless)
title (unitless)
library_strategy (unitless)
library_source (unitless)
library_selection (unitless)
library_layout (unitless)
platform (unitless)
instrument_model (unitless)
design_description (unitless)
filetype (unitless)
filename (unitless)
filename2 (unitless)
MBD_cv_id (unitless)
pCO2_treatment (P CO2 Treatment, ppm)


[crest] - Mooring data from the Crest mooring on Georges Bank from 1994-1995 as part of the U.S. GLOBEC Georges Bank project (GB project) (U.S. GLOBEC Georges Bank)

Mooring data from the Crest mooring on Georges Bank from 1994-1995 as part of the U.S. GLOBEC Georges Bank project

cdm_data_type = Other
VARIABLES:
year_start
brief_desc
latitude (degrees_north)
longitude (degrees_east)
depth (m)
hour_gmt (whole hours)
minute_gmt (whole minutes)
seconds_gmt (decimal seconds)
day_gmt
month_gmt
year
julian_day (decimal day)
flvolt (volts)
trans (percent)
par_scalar (microEinstein/meter^2/second)
cond (seimens/meter)
sigma_0 ((kg/m^3))
sal
temp (Temperature, decimal deg. C)
temp_air (decimal deg. C)


[Critical swimming speed] - Recorded critical swimming speed of larval Amphiprion percula, Elacatinus lori, and Elacatinus colini measured throughout development from hatching through settlement. (Collaborative Research: The Role of Larval Orientation Behavior in Determining Population Connectivity)

Recorded critical swimming speed of larval Amphiprion percula, Elacatinus lori, and Elacatinus colini measured throughout development from hatching through settlement.

cdm_data_type = Other
VARIABLES:
date (unitless)
sp (unitless)
pair_id (unitless)
clutch_id (unitless)
dph (days post hatch)
stand_dph (percent)
crit (centimeters per second)
TL (milimeters)
SL (milimeters)
BD (milimeters)
PA (milimeters squared)


[Crocosphaera watsonii light experiment] - Results of laboratory experiment examining growth, CO2- and N2-fixation of Crocosphaera watsonii isolates in differing light intensities; conducted in the Hutchins Laboratory, USC (CO2 control of oceanic nitrogen fixation and carbon flow through diazotrophs)

Results of laboratory experiment examining growth, CO2- and N2-fixation of Crocosphaera watsonii isolates in differing light intensities; conducted in the Hutchins Laboratory, USC.

cdm_data_type = Other
VARIABLES:
isolate (text)
light (micromoles quanta per square meter per second (umol quanta m-2 s-1))
growth_rate (per day)
growth_rate_sd (per day)
cell_diameter (micrometers (um))
cell_diameter_sd (micrometers (um))
C_specific_CO2_fix (per hour)
C_specific_CO2_fix_sd (per hour)
N_specific_gross_N2_fix (per hour)
N_specific_gross_N2_fix_sd (per hour)
N_specific_net_15N2_fix (N Specific Net 15 N2 Fix, per hour)
N_specific_net_15N2_fix_sd (N Specific Net 15 N2 Fix Sd, per hour)
gross_to_net_N2fix (ratio)
gross_to_net_N2fix_sd (ratio)