[Carbonate Chemistry - pCO2 x DO effects on Menidia menidia] - Carbonate chemistry data from static and fluctuating pCO2 x dissolved oxygen (DO) experiments on Menidia menidia (Collaborative research: Understanding the effects of acidification and hypoxia within and across generations in a coastal marine fish)

Summary:
Coastal ecosystems experience substantial natural fluctuations in pCO2 and dissolved oxygen (DO) conditions on diel, tidal, seasonal and interannual timescales. Rising carbon dioxide emissions and anthropogenic nutrient input are expected to increase these pCO2 and DO cycles in severity and duration of acidification and hypoxia. How coastal marine organisms respond to natural pCO2 \u00d7 DO variability and future climate change remains largely unknown. Here, we assess the impact of static and cycling pCO2 \u00d7 DO conditions of various magnitudes and frequencies on early life survival and growth of an important coastal forage fish, Menidia menidia. Static low DO conditions severely decreased embryo survival, larval survival, time to 50% hatch, size at hatch and post-larval growth rates. Static elevated pCO2 did not affect most response traits, however, a synergistic negative effect did occur on embryo survival under hypoxic conditions (3.0 mg L-1). Cycling pCO2 \u00d7 DO, however, reduced these negative effects of static conditions on all response traits with the magnitude of fluctuations influencing the extent of this reduction. This indicates that fluctuations in pCO2 and DO may benefit coastal organisms by providing periodic physiological refuge from stressful conditions, which could promote species adaptability to climate change.

cdm_data_type = Other
VARIABLES:
Experiment (unitless)
Experiment_descrip (unitless)
Treatment (unitless)
Cycling_Pattern (unitless)
Metric (unitless)
Measured_pH (Measured P H, pH scale, NIST)
Measured_pH_SD (Measured P H SD, pH scale, NIST)
Measured_DO (milligrams per liter (mg L-1))
Measured_DO_SD (milligrams per liter (mg L-1))
pCO2 (P CO2, microatmospheres (uatm))
pCO2_SD (P CO2 SD, microatmospheres (uatm))
AT (micromoles per kilogram (umol kg-1))
AT_SD (micromoles per kilogram (umol kg-1))
... (4 more variables)


[carbonate chemistry and corals expt] - Results from OA/feeding experiment: carbonate chemistry and coral skeletal weight, symbiont density, and total tissue lipid content of samples collected from northwestern Bermuda patch reefs; 2010 (An Investigation of the Role of Nutrition in the Coral Calcification Response to Ocean Acidification)

Summary:
Results from OA/feeding experiment: carbonate chemistry and coral skeletal weight, symbiont density, and total tissue lipid content of samples collected from northwestern Bermuda patch reefs; 2010

cdm_data_type = Other
VARIABLES:
treatment (text)
sal (psu)
sal_sd (psu)
alk (microequivalent per kilogram (ueq/kg))
alk_sd (microequivalent per kilogram (ueq/kg))
DIC (micromoles per kilogram (umol/kg))
DIC_sd (micromoles per kilogram (umol/kg))
pH (Sea Water Ph Reported On Total Scale, NBS)
pH_sd (P H SD, NBS)
HCO3 (micromoles per kilogram (umol/kg))
HCO3_sd (micromoles per kilogram (umol/kg))
CO3 (micromoles per kilogram (umol/kg))
CO3_sd (micromoles per kilogram (umol/kg))
AragSat (Arag Sat, dimensionless)
AragSat_sd (Arag Sat Sd, dimensionless)
PcntSpat3oSepta (Pcnt Spat3o Septa, %)
PcntSpat3oSepta_se (Pcnt Spat3o Septa Se, %)
SeptaDiam (Septa Diam, micrometers (um))
SeptaDiam_se (Septa Diam Se, micrometers (um))
CoralliteWt (Corallite Wt, micrograms (ug))
CoralliteWt_se (Corallite Wt Se, micrograms (ug))
TotLipid_per_area (Tot Lipid Per Area, micrograms per square millimeter (ug/mm^2))
TotLipid_per_area_se (Tot Lipid Per Area Se, micrograms per square millimeter (ug/mm^2))
SymbiontDensity (Symbiont Density, x1000 cells per square millimeter (x10^3 cells/mm^2))
SymbiontDensity_se (Symbiont Density Se, x1000 cells per square millimeter (x10^3 cells/mm^2))
... (5 more variables)


[carbonate chemistry] - Table 1: Experimental conditions and fluid carbonate chemistry for RPI-3 run where only aragonite precipitated (Biologically induced methane oxidation and precipitation of carbonate minerals: An experimental study)

Summary:
Table 1: Experimental conditions and fluid carbonate chemistry for RPI-3 run where only aragonite precipitated.

cdm_data_type = Other
VARIABLES:
fluid (unitless)
temp (Temperature, degrees Celsius)
press (bars)
S (salinity units)
TA (micromole per kg of water)
pH_meas (P H Meas, pH units)
pH_calc (P H Calc, pH units)
CO3 (micromole per kg of water)
Ca (milligram per kg of water)
OM_ar (unitless)


[Carbonate data from water samples] - Water samples from CTD casts and vehicle-mounted bottles from the R/V Atlantis, R/V Ronald Brown, R/V Falkor, & E/V Nautilus in the Gulf of Mexico & Florida from 2010 to 2014 (Lophelia OA project) (Physiological and genetic responses of the deep-water coral, Lophelia pertusa, to ongoing ocean acidification in the Gulf of Mexico)

Summary:
Water samples from CTD casts and vehicle-mounted bottles from the R/V Atlantis, R/V Ronald Brown, R/V Falkor, & E/V Nautilus in the Gulf of Mexico & Florida from 2010 to 2014 (Lophelia OA project)

cdm_data_type = Other
VARIABLES:
cruise_name (unitless)
cruise_id (unitless)
site (unitless)
instrument (unitless)
measurement_location (unitless)
sample_ID (unitless)
year (unitless)
month (unitless)
day
latitude (degrees_north)
longitude (degrees_east)
depth (m)
salinity (Sea Water Practical Salinity, practical salinity units (PSU))
pressure (decibar (dbar))
temperature (celsius)
measured_temp (celsius)
input_pH (Input P H, total pH scale)
TA (micromoles per killigram (umol/kg))
nTA (N TA, micromoles per killigram (umol/kg))
pHT (P HT, total pH scale)
omega_aragonite (unitless)
DIC (micromoles per killigram (umol/kg))
pCO2 (P CO2, microatomospheres (uatm))
revelle_factor (unitless)
bicarbonate_ion (micromoles per killigram (umol/kg))
carbonate_ion (micromoles per killigram (umol/kg))
TA_DIC (unitless)
comments (unitless)


[Carbonate_Chemistry_2017-2018] - Carbonate chemistry effects from Hurricane Harvey in San Antonio Bay and Mission Aransas Estuary from 2017-02-22 to 2018-11-15 (CAREER: The Impact of Hydrologic State on CO2 Flux and Acidification in Subtropical Estuaries)

Summary:
A calibrated YSI 6920 multisonde was used to obtain in-situ temperature at both the surface (~0.5 m) and the bottom (within 0.5 m from the sediment-water interface) of the water column, and a Van Dorn water sampler was used to take water samples from both the surface and bottom of the water column.

cdm_data_type = Other
VARIABLES:
Station (unitless)
longitude (degrees_east)
latitude (degrees_north)
DATE (unitless)
depth (m)
TEMP (Temperature, degrees C)
SAL (psu)
DIC (micromole per kilogram (umol/kg))
TA (micromole per kilogram (umol/kg))
Calcium (milimole per kilogram (mmol/kg))
pH (Sea Water Ph Reported On Total Scale, unitless)
pH_Label (P H Label, unitless)
ISO_Date (unitless)


[Carpenter 2018: carbonate chemistry] - Carbonate chemistry from outdoor flumes at the UCB Gump Research Station Moorea, French Polynesia from November of 2015 to March of 2016 (RUI: Ocean Acidification- Category 1- The effects of ocean acidification on the organismic biology and community ecology of corals, calcified algae, and coral reefs)

Summary:
This dataset carbonate chemistry data from outdoor flumes at the UCB Gump Research Station Moorea, French Polynesia. These measurements were taken during an experiment designed to measure coral reef community metabolism responses to ocean acidification over a 4-month period from November 13th, 2015 to March 15th, 2016. These data were published in Carpenter et al. (2018).

cdm_data_type = Other
VARIABLES:
Flume (unitless)
Treatment (unitless)
Date (unitless)
pH_24h (P H 24H, total hydrogen ion scale (pHT))
pH_Day (P H Day, total hydrogen ion scale (pHT))
pH_night (P H Night, total hydrogen ion scale (pHT))
pCO2_24h (P CO2 24h, microatmospheres (μatm))
pCO2_Day (P CO2 Day, microatmospheres (μatm))
pCO2_Night (P CO2 Night, microatmospheres (μatm))
DIC_24h (micromoles per kilogram (μmol kg-1))
DIC_Day (micromoles per kilogram (μmol kg-1))
DIC_Night (micromoles per kilogram (μmol kg-1))
TA_24h (micromoles per kilogram (μmol kg-1))
TA_Day (micromoles per kilogram (μmol kg-1))
TA_Night (micromoles per kilogram (μmol kg-1))
Omega_24h (omega aragonite (Ωa))
Omega_Day (omega aragonite (Ωa))
Omega_Night (omega aragonite (Ωa))


[Carpenter 2018: hourly metabolism] - Coral community hourly metabolism from outdoor flumes at the UCB Gump Research Station Moorea, French Polynesia from November of 2015 to March of 2016 (RUI: Ocean Acidification- Category 1- The effects of ocean acidification on the organismic biology and community ecology of corals, calcified algae, and coral reefs)

Summary:
This dataset contains hourly coral community metabolism data from outdoor flumes at the UCB Gump Research Station Moorea, French Polynesia. These measurements were taken during an experiment designed to measure coral reef community metabolism responses to ocean acidification over a 4-month period from November 13th, 2015 to March 15th, 2016. These data were published in Carpenter et al. (2018).

cdm_data_type = Other
VARIABLES:
Flume (unitless)
Treatment (unitless)
Time_hrs (hours)
Mean_Gnet (millimoles per meter squared per hour (mmol/m2/h))
Gnet_SE (millimoles per meter squared per hour (mmol/m2/h))
Gnet_N (number per incubation)
Mean_Pnet (millimoles per meter squared per hour (mmol/m2/h))
Pnet_SE (millimoles per meter squared per hour (mmol/m2/h))
Pnet_N (number per incubation)


[Carpenter 2018: metabolism] - Coral community metabolism from outdoor flumes at the UCB Gump Research Station Moorea, French Polynesia from November of 2015 to March of 2016 (RUI: Ocean Acidification- Category 1- The effects of ocean acidification on the organismic biology and community ecology of corals, calcified algae, and coral reefs)

Summary:
This dataset contains coral community metabolism data from outdoor flumes at the UCB Gump Research Station Moorea, French Polynesia. These measurements were taken during an experiment designed to measure coral reef community metabolism responses to ocean acidification over a 4-month period from November 13th, 2015 to March 15th, 2016. These data were published in Carpenter et al. (2018).

cdm_data_type = Other
VARIABLES:
Treatment (unitless)
Flume (unitless)
Date (unitless)
Time_of_day (unitless)
Gnet (millimoles per meter squared per hour (mmol/m2/h))
Pnet (millimoles per meter squared per hour (mmol/m2/h))


[Carpenter 2018: physical data] - Temperature and irradiance from outdoor flumes at the UCB Gump Research Station Moorea, French Polynesia from November of 2015 to March of 2016 (RUI: Ocean Acidification- Category 1- The effects of ocean acidification on the organismic biology and community ecology of corals, calcified algae, and coral reefs)

Summary:
Temperature and irradiance from outdoor flumes at the UCB Gump Research Station Moorea, French Polynesia from November of 2015 to March of 2016.

cdm_data_type = Other
VARIABLES:
Date (unitless)
Treatment_days (days)
Treatment (unitless)
Flume (unitless)
Temperature_24h (degrees Celcius (C))
Temperature_day (degrees Celcius (C))
Temperature_night (degrees Celcius (C))
Irrandiance (micromoles per meters squared per second (umol m-2 s-1))


[Carpinteria Salt Marsh Elemental and Isotope Composition Data for Sediment and Biomass] - Elemental and isoptopic composition of sediment and biomass from the Carpinteria Salt March sampled in 2020 and 2021 (Carbon Storage in Mangrove Ecosystems via Abiotic Sulfurization)

Summary:
Here we provide data that help to evaluate organic matter sulfurization and pyrite formation in a salt marsh in California. We collected six sediment cores from three habitat types at Carpinteria Salt Marsh Reserve (34.41336°N, 119.84365°W) in July 2020. One core was used to establish dry bulk density, while the other was reserved for geochemical measurements. Both cores were kept at -20°C until analysis could be carried out. We provide elemental concentrations (organic C/N/S, Fe, pyrite) and isotopic compositions (δ13C, δ34S) of important carbon, iron and sulfur sediment pools. Additional biomass samples were collected between 2020 and 2023 and were also analyzed for elemental (C/N/S) and isotopic compositions (δ13C, δ34S). Data will be useful for those interested in assessing organic matter sulfurization and pyrite formation in blue carbon ecosystems such as mangroves, seagrass meadows and salt marshes. Data will also be informative for researchers investigating organic and inorganic sulfur cycling. Samples were collected by Lena Capece and Morgan Raven, data were interpreted by Lena Capece and Morgan Raven.

cdm_data_type = Other
VARIABLES:
collection_date (unitless)
latitude (degrees_north)
longitude (degrees_east)
type (unitless)
location (unitless)
depth (m)
depth_bin (unitless)
habitat (unitless)
OC (weight percent carbon (wt. %C))
CPK (weight percent carbon (wt. %C))
OS (unitless)
SPK (unitless)
CN (weight percent sulfur (wt. %S))
CNPK (weight percent sulfur (wt. %S))
SC (unitless)
SCPK (unitless)
... (10 more variables)


[Carpinteria Salt Marsh Sulfur Speciation in Sediments and Biomass] - Sulfur speciation of sediment and biomass from the Carpinteria Salt March sampled in 2020 and 2021 (Carbon Storage in Mangrove Ecosystems via Abiotic Sulfurization)

Summary:
Here we provide data that help to evaluate organic matter sulfurization and pyrite formation in a salt marsh in California. We collected six sediment cores from three habitat types at Carpinteria Salt Marsh Reserve (34.41336°N, 119.84365°W) in July 2020. One core was used to establish dry bulk density, while the other was reserved for geochemical measurements. Both cores were kept at -20°C until analysis could be carried out. We provide data on the speciation of sulfur in acid hydrolysis resistant organic matter and biomass samples. Data will be useful for those interested in assessing organic matter sulfurization in blue carbon ecosystems such as mangroves, seagrass meadows and salt marshes. Data will also be informative for researchers investigating organic sulfur cycling. Samples were collected by Lena Capece and Morgan Raven, data were interpreted by Lena Capece and Morgan Raven.

cdm_data_type = Other
VARIABLES:
collection_date (unitless)
latitude (degrees_north)
longitude (degrees_east)
type (unitless)
location (unitless)
habitat (unitless)
depth_core (Depth, cm)
disulfide (fraction as a decimal)
monosulfide (fraction as a decimal)
aromatic (fraction as a decimal)
sulfoxide (fraction as a decimal)
sulfonate (fraction as a decimal)
sulfate_ester (fraction as a decimal)
chi_sq (unitless)
reduced (fraction as a decimal)
oxidized (fraction as a decimal)


[Catch revenue by community] - Total catches and estimated revenue by species for communities-at-sea based on landings reported on Vessel Trip Reports (Adaptations of fish and fishing communities to rapid climate change)

Summary:
Total catches and estimated revenue by species for communities-at-sea based on landings reported on Vessel Trip Reports (VTRs). Landings data were compiled from VTRs and summed over the available years of data for each community.

cdm_data_type = Other
VARIABLES:
community (unitless)
years (unitless)
sppcode (unitless)
sppname (unitless)
species (unitless)
lbs_caught (pounds (lbs))
totalCatch (Total Catch, pounds (lbs))
pCatch (P Catch, unitless)
meanPrice (Mean Price, US dollars per pound (USD/lb))
rev (US dollars (USD))
totalRev (Total Rev, US dollars (USD))
pRev (P Rev, unitless)


[ccs_proc_CTD] - CTD data from California Current System (CCS) Process/Mesoscale Cruises on the R/Vs New Horizon, Revelle, Thompson, and Wecoma in the Northeast Pacific from 2000-2002 as part of the U.S. GLOBEC program (NEP project) (U.S. GLOBEC Northeast Pacific)

Summary:
CTD data from California Current System (CCS) Process/Mesoscale Cruises on the R/Vs New Horizon, Revelle, Thompson, and Wecoma in the Northeast Pacific from 2000-2002 as part of the U.S. GLOBEC program.

cdm_data_type = Other
VARIABLES:
cruiseid (unitless)
year (unitless)
station (unitless)
station_name (unitless)
day (unitless)
month (unitless)
time2 (Time, unitless)
depth_w (Depth, meters)
latitude (degrees_north)
longitude (degrees_east)
press (decibars)
temp (Temperature, degrees Celsius)
sal (Practical Salinity Scale, dimensionless)
potemp (International Practical Temperature Scale - 68 ,or 90)
sigma_0 (not supplied)
sp_vol_an (CL/T)
DYN_HT (J/KG)
flvolt (volts)
trans (%)
trans_v (volts)
O2_v (volts)
O2_temp (degrees C)
O2S (O2 S, ml per liter)
O2 (milliliter/liter)
PAR (Downwelling Photosynthetic Photon Radiance In Sea Water, uE/cm2/sec)


[CDOM] - Chromophoric dissolved organic matter (CDOM) from two microcosm incubation experiments conducted under three light treatments using water originating from West Bay of the Neuse River Estuary, North Carolina USA in 2021 and 2022 (Bacteria as Biosensors of Carbon and Energy Flow in Marine Ecosystems: Quantitative Links Between Substrates, Transcripts, and Metabolism)

Summary:
Chromophoric dissolved organic matter (CDOM) was collected for two microcosm incubation experiments. Sample water originated from West Bay of the Neuse River Estuary, North Carolina USA in 2021 and 2022. The microcosms were 60 liters, conducted in biological duplicates under three light treatment incubations: 12-hour light-dark cycle of photosynthetically active radiation (PAR), 12-hour light-dark cycle of UV-B radiation, or darkness. Samples were collected from the microcosms in duplicate every few days for over one month to examine how light and the resulting microbial activity altered the dissolved organic carbon (DOC) pool over time. Absorbance spectra of 0.2 micron filtered estuarine water was measured from 190 - 1100 nanometers (nm) on a Genesys 10S UV-Vis spectrophotometer for the calculation of absorbance coefficients, spectral slopes, and slope ratio which describe the organic matter complexity as it develops throughout the incubations.

cdm_data_type = Other
VARIABLES:
Experiment_Name (unitless)
Start_date (unitless)
Treatment (unitless)
Incubation_day (days)
Tank_ID (unitless)
nm (nanometers (nm))
absp_coef (unitless)


[Cell biovolumes] - Biovolume data from samples obtained on Gould cruise LMG1411 in the Western Antarctica Peninsula during 2014 (Polar Transcriptome project). (Iron and Light Limitation in Ecologically Important Polar Diatoms: Comparative Transcriptomics and Development of Molecular Indicators)

Summary:
Biovolume data from samples obtained on Gould cruise LMG1411 in the Western Antarctica Peninsula during 2014 (Polar Transcriptome project).

cdm_data_type = Other
VARIABLES:
species (unitless)
biovolume_cell (um^3)
sample_size (number)


[Cell counts in dilution experiment] - Prochlorococcus and Synechococcus cell counts in dilution experiment treatments from samples collected on RV Cape Hatteras cruises CH0409 and CH0510 in 2009 and 2010. (Top-Down Regulation of Picophytoplankton in the Sargasso Sea: Application of a Reciprocal Transplant / Dilution Approach)

Summary:
Prochlorococcus and Synechococcus cell counts in dilution experiment treatments from samples collected on RV Cape Hatteras cruises CH0409 and CH0510 in 2009 and 2010.

cdm_data_type = Other
VARIABLES:
Cruise (unitless)
Exper (unitless)
Bottle (unitless)
Depth_Sample (Depth, meters)
Depth_Incubate (Depth, meters)
Dilution (number)
time2 (Time, unitless)
Pro (cells per milliliter)
Syn (cells per milliliter)
Count (number)


[Cellular element quotas: Si in Synechococcus cells] - Element quotas of individual Synechococcus cells collected during Bermuda Atlantic Time-series Study (BATS) cruises aboard the R/V Atlantic Explorer between dates 2012-07-11 and 2013-10-13 (Si_in_Syn project) (Understanding the Role of Picocyanobacteria in the Marine Silicate Cycle)

Summary:
Field work at the Bermuda Atlantic Time Series (BATS) site was done to assess
the contribution of Synechococcus and diatoms to total biogenic silica in
surface waters. The data include information about the elemental content
(Silicon, Phosphorus, and Sulfur) of Synechococcus cells as measured by
synchrotron-based x-ray fluorescence (SBXF) microscopy.\u00a0 Derived mole
ratios (Si:P, and Si:S) are also provided.

References:

Twining, B. S., Rauschenberg, S., Morton, P. L., & Vogt, S. (2015). Metal
contents of phytoplankton and labile particulate material in the North
Atlantic Ocean. Progress in Oceanography, 137, 261\u2013283.
doi:10.1016/j.pocean.2015.07.001
[https://www.researchgate.net/publication/282626294_Metal_contents_of_phytoplankton_and_labile_particulate_material_in_the_North_Atlantic_Ocean](\\https://www.researchgate.net/publication/282626294_Metal_contents_of_phytoplankton_and_labile_particulate_material_in_the_North_Atlantic_Ocean\\)

DMO notes:

  * Changed formatting of lat/lon to 4 decimal places from 5.

  * Elemental content values rounded to two decimal places from 15.

cdm_data_type = Other
VARIABLES:
cruise_id (text)
BATS_bottle_ID (text)
cast (text)
depth_nom (Depth, text)
depth (m)
latitude (degrees_north)
longitude (degrees_east)
SXRF_run (text)
... (6 more variables)


[Census of heat tolerance among Florida's threatened staghorn corals] - Census of heat tolerance among Florida's threatened staghorn corals from a study of Acropora cervicornis conducted from August to October 2020 (Collaborative Research: Investigating the genomic basis of key performance traits to quantify the evolutionary potential of coral populations under climate change)

Summary:
The rapid loss of reef-building corals owing to ocean warming is driving the development of interventions such as coral propagation and restoration, selective breeding and assisted gene flow. Many of these interventions target naturally heat-tolerant individuals to boost climate resilience, but the challenges of quickly and reliably quantifying heat tolerance and identifying thermotolerant individuals have hampered implementation. Here, we used coral bleaching automated stress systems to perform rapid, standardized heat tolerance assays on 229 colonies of Acropora cervicornis across six coral nurseries spanning Florida's Coral Reef, USA. Analysis of heat stress dose–response curves for each colony revealed a broad range in thermal tolerance among individuals (approx. 2.5°C range in Fv/Fm ED50), with highly reproducible rankings across independent tests (r = 0.76). Most phenotypic variation occurred within nurseries rather than between them, pointing to a potentially dominant role of fixed genetic effects in setting thermal tolerance and widespread distribution of tolerant individuals throughout the population. The identification of tolerant individuals provides immediately actionable information to optimize nursery and restoration programs for Florida's threatened staghorn corals. This work further provides a blueprint for future efforts to identify and source thermally tolerant corals for conservation interventions worldwide.

cdm_data_type = Other
VARIABLES:
nursery (unitless)
colonyID (unitless)
longitude (Source_lon, degrees_east)
source_lat (degrees_north)
A_Acer (Symbiodinium cells per coral cell)
D_Acer (Durusdinium cells per coral cell)
date_CBASS (unitless)
CBASS_ed50 (degrees Celsius)


[Cerro Mundo Algal Ash-Free Dry Weight] - Macroalgal biomass data (Preburn, Postburn, and Ash-Free Dry Weight) collected in the nearshore shallow subtidal during six field experiments conducted at Cerro Mundo Bay in the Galapagos Islands between July 2021 and May 2022 (The Role of Temperature in Regulating Herbivory and Algal Biomass in Upwelling Systems)

Summary:
Increased standing macroalgal biomass in upwelling zones is generally assumed to be the result of higher nutrient flux due to upwelled waters. However, other factors can strongly impact macroalgal communities. For example, herbivory and temperature, via their effects on primary producers and the metabolic demands of consumers, can also influence macroalgal biomass and productivity, respectively.  Although there are a fair number of studies looking at the interactive effects of herbivores and nutrients in both tropical and temperate regions, there is a lack of studies looking at these effects in tropical or subtropical upwelling regions. The purpose of this study was to measure the effects that herbivores, temperature, and nutrient availability have on standing macroalgal biomass. We manipulated nutrient availability and herbivory in six field experiments during contrasting productivity and thermal regimes (cool-upwelling and warm, non-upwelling season) on a subtidal nearshore rocky reef.

Here, we present the macroalgal biomass raw data (Preburn, Postburn, and Ash-Free Dry Weight) collected in the nearshore shallow subtidal during the six field experiments.

cdm_data_type = Other
VARIABLES:
Trial (unitless)
Cage (unitless)
Treatment (unitless)
N (unitless)
Algae_Type (unitless)
Foil_cup_weight (grams (g))
Sample_and_foil_cup_weight (grams (g))
Preburn_weight (grams (g))
Ceramic_cup_weight (grams (g))
Sample_and_ceramic_cup_weight (grams (g))
Postburn_weight (grams (g))
AFDW (grams (g))


[Cerro Mundo Temperature 2] - Environmental temperature data collected at Cerro Mundo Bay, San Cristobal, Galapagos from 2022-2023 (Galapagos 2021 project) (Temperature Regulation of Top-Down Control in a Pacific Upwelling System)

Summary:
Increased standing macroalgal biomass in upwelling zones is generally assumed to be the result of higher nutrient flux due to upwelled waters, However, other factors can strongly impact macroalgal communities. For example, herbivory and temperature, via their effects on primary producers and the metabolic demands of consumers, can also influence macroalgal biomass and productivity, respectively.  Although there is a fair number of studies looking at the interactive effects of herbivores and nutrients in both tropical and temperate regions, there is a lack of studies looking at these effects in tropical or subtropical upwelling regions. The purpose of this study was to measure the effects that herbivores, temperature, and nutrient availability have on standing macroalgal biomass. We manipulated nutrient availability and herbivory in six field experiments during contrasting productivity and thermal regimes (cool-upwelling and warm, non-upwelling season) on a subtidal nearshore rocky reef.

Here, we present a set of temperature (°C) data collected at Cerro Mundo Bay, San Cristobal, Galapagos from September 2022 to February 2023. The environmental temperature was recorded every 15 minutes using a HOBO Water Temperature pro V2 Data Logger (Onset®) attached to the seafloor at a 10 meters depth mark.

cdm_data_type = Other
VARIABLES:
DateTime_Local (unitless)
time (Iso_datetime_utc, seconds since 1970-01-01T00:00:00Z)
Temp (Celcius)
Latitude (degrees_north)
longitude (degrees_east)
depth (m)


[Cerro Mundo Temperature] - Temperature data collected at Cerro Mundo Bay, San Cristobal, Galapagos from July 2019 to August 2022 using an Onset HOBO Water Temperature Pro v2 Data Logger (The Role of Temperature in Regulating Herbivory and Algal Biomass in Upwelling Systems)

Summary:
Increased standing macroalgal biomass in upwelling zones is generally assumed to be the result of higher nutrient flux due to upwelled waters. However, other factors can strongly impact macroalgal communities. For example, herbivory and temperature, via their effects on primary producers and the metabolic demands of consumers, can also influence macroalgal biomass and productivity, respectively.  Although there are a fair number of studies looking at the interactive effects of herbivores and nutrients in both tropical and temperate regions, there is a lack of studies looking at these effects in tropical or subtropical upwelling regions. The purpose of this study was to measure the effects that herbivores, temperature, and nutrient availability have on standing macroalgal biomass. We manipulated nutrient availability and herbivory in six field experiments during contrasting productivity and thermal regimes (cool-upwelling and warm, non-upwelling season) on a subtidal nearshore rocky reef.

Here, we present a set of temperature (°C) data collected at Cerro Mundo Bay, San Cristobal, Galapagos from July 2019 to August 2022. The environmental temperature was recorded every 15 minutes using a HOBO Water Temperature Pro v2 Data Logger (Onset®) attached to the seafloor at a 10 meters depth mark.

cdm_data_type = Other
VARIABLES:
ISO_DateTime_Local (unitless)
time (Iso_datetime_utc, seconds since 1970-01-01T00:00:00Z)
Temp (degrees Celsius)


[cetaceans] - Cetacean observations from the Northern California Current in the Northeast Pacific on R/V New Horizon cruises NH0005 and NH0007 in 2000 (NEP project) (U.S. GLOBEC Northeast Pacific)

Summary:
Cetacean observations from the Northern California Current in the Northeast Pacific on R/V New Horizon cruises NH0005 and NH0007 in 2000

cdm_data_type = Other
VARIABLES:
cruiseid (dimensionless)
month (dimensionless)
year (dimensionless)
species_code (dimensionless)
species (dimensionless)
common_name (dimensionless)
number (dimensionless)
month_local (dimensionless)
day_local (dimensionless)
time_local (hours & decimal minutes)
latitude (degrees_north)
longitude (degrees_east)
effort_type (dimensionless)


[cgoa_ltop_nutrients] - Nutrient concentrations from 41 R/V Alpha Helix and R/V Wecoma Long-Term Observation Program (LTOP) cruises to the Coastal Gulf of Alaska from 1997-2004 as part of the U.S. GLOBEC program (NEP project) (U.S. GLOBEC Northeast Pacific)

Summary:
Nutrient concentrations from 41 R/V Alpha Helix and R/V Wecoma Long-Term Observation Program (LTOP) cruises to the Coastal Gulf of Alaska from 1997-2004 as part of the U.S. GLOBEC program.

cdm_data_type = Other
VARIABLES:
cruise_id (dimensionless)
ship (dimensionless)
year (dimensionless)
stn_no (dimensionless)
stn_id (dimensionless)
latitude (degrees_north)
longitude (degrees_east)
water_depth (meters)
month_gmt (in GMT)
day_gmt (in GMT)
time_gmt (in GMT)
depth (m)
PO4 (Mass Concentration Of Phosphate In Sea Water, micromoles/L)
SiOH4 (Si OH4, micromoles/L)
NO3_NO2 (Mole Concentration Of Nitrate In Sea Water, micromoles/L)
NO2 (Mole Concentration Of Nitrite In Sea Water, micromoles/L)
NH4 (Mole Concentration Of Ammonium In Sea Water, micromoles/L)
NO3 (Mole Concentration Of Nitrate In Sea Water, micromoles/L)


[Change in denitrification - N2 flux] - Change in denitrification due to oyster reefs from the coast of North Carolina in 2010 (Microbial Regulation of Greenhouse Gas N2O Emission from Intertidal Oyster Reefs)

Summary:
Change in denitrification due to oyster reefs from the coast of North Carolina in 2010

cdm_data_type = Other
VARIABLES:
date (unitless)
area (unitless)
location (unitless)
latitude (degrees_north)
longitude (degrees_east)
nutrients (unitless)
dN2 (D N2, umol N m-2 hr-1)


[Chemical data] - Chemical data associated with field collections from the Gulf of Maine, Nauset Marsh Estuary System, and Long Island Sound (Alexandrium isotopes project) (Collaborative Research: Identification of nitrogen sources for toxic Alexandrium blooms using a novel species-specific tracer, d15N-saxitoxin)

Summary:
Chemical data associated with field collections from the Gulf of Maine, Nauset Marsh Estuary System, and Long Island Sound (Alexandrium isotopes project)

cdm_data_type = Other
VARIABLES:
Date (unitless)
Sample_ID (unitless)
Description (unitless)
depth (m)
d15N_NO3 (D15 N NO3, per mil (0/00))
d18O_NO3 (D18 O NO3, per mil (0/00))
d15N_NH4 (Mole Concentration Of Ammonium In Sea Water, per mil (0/00))
d15N_POM (D15 N POM, per mil (0/00))
NO3 (micromoles per liter)
NH4 (Mole Concentration Of Ammonium In Sea Water, micromoles per liter)
PO4 (micromoles per liter)
Silicate (Mass Concentration Of Silicate In Sea Water, micromoles per liter)


[Chemistry and cell counts] - Chemistry and cell counts of formation fluids from North Pond, western flank of the Mid-Atlantic Ridge, from 2012-2014 (Collaborative Research: Characterization of Microbial Transformations in Basement Fluids, from Genes to Geochemical Cycling)

Summary:
Chemistry and cell counts of formation fluids from North Pond

cdm_data_type = Other
VARIABLES:
sample (unitless)
bioproject_id (unitless)
collection_date (unitless)
description (unitless)
latitude (degrees_north)
longitude (degrees_east)
depth_minimum (Depth, meters)
depth_maximum (Depth, meters)
Cell_counts (cells per mililiter (cells/mL))
confidence_level_95pcnt (cells per mililiter (cells/mL))
O2 (micromole per Liter (umol/L))
NO3 (Mole Concentration Of Nitrate In Sea Water, micromole per Liter (umol/L))
Si (Mass Concentration Of Silicate In Sea Water, micromole per Liter (umol/L))


[Chemotaxis of P. haloplanktis towards exudates of Synechoccocus] - Chemotaxis of P. haloplanktis towards exudates of phage-infected and control Synechoccocus (VIC project) (Collaborative Research: Viral induced chemotaxis mediating cross-trophic microbial interactions and carbon flux)

Summary:
This data set summarises the chemotactic response of a model marine bacteria (Pseudoalteromonas haloplanktis  ATCC 700530) to filtered exudates of the cyanobacteria Synechococcus sp WH8102. Two filtrate sets were collected, each spanning 6 time points (named T1 -> T6), with the initial assays split into 4 biological replicates (named A,B,C,D).

The two treatments were:

1) A control treatment (named "Control", or shortened to "C")

2) A phage-infected treatment (named "Phage", or shortened to "P"), where host Synechococcus were infected with the T-4 like Myovirus S-SSM5, with data collected over the pre-lysis cycle.

These treatments are fully described in: https://doi.org/10.1038/s43705-022-00169-6.

At both time points, statistically significant preference was measured towards the phage-infected exudates by analyzing the cell distribution across a microfluidic channel.

cdm_data_type = Other
VARIABLES:
Experiment_ID (unitless)
Experiment_type (unitless)
Bioreplicate_ID (unitless)
Time_point_ID (unitless)
Treatment (unitless)
Time_t (minutes)
beta_Repeat_1 (unitless)
beta_Repeat_2 (unitless)
beta_Repeat_3 (unitless)
Average (unitless)
Standard_Error (unitless)


[Chemotaxis of V. alginolyticus towards Synechococcus Cells] -  (Collaborative Research: Viral induced chemotaxis mediating cross-trophic microbial interactions and carbon flux)

Summary:
This data set summarises the chemotactic response of model heterotrophic bacteria, Vibrio alginolyticus towards phage-infected cyanobacteria Synechococcus cells/exudates respectively. Phage treatments are fully described in: https://doi.org/10.1038/s43705-022-00169-6.

Six microfluidic experiments were conducted each on different days: three with phage infection and three control, uninfected experiments. Both uninfected and phage-infected experiments were performed identically, with the substitution of phage addition for an equivalent volume of SN media in the uninfected experiments. All infection experiments were performed within a week using the same phage stock, with Synechococcus WH8102 as the host. Non-motile host cells were loaded into a microfluidic chamber with the model heterotrophic bacteria V. alginolyticus.

Analysis of the cell spatial distribution over time revealed a strong sustained accumulation of chemotactic bacteria towards phage-infected cyanobacteria, and no measurable accumulation in the control condition. This provides the first direct experimental evidence of chemotaxis of heterotrophic bacteria towards cyanobacteria.

cdm_data_type = Other
VARIABLES:
time_sample (Time, minutes)
INF1_4HPI (unitless)
INF2_4HPI (unitless)
INF3_4HPI (unitless)
INF_4HPI_AVG (unitless)
INF_4HPI_SEM (unitless)
INF1_8HPI (unitless)
INF2_8HPI (unitless)
INF3_8HPI (unitless)
INF_8HPI_AVG (unitless)
INF_8HPI_SEM (unitless)
UI1_4HPI (unitless)
UI2_4HPI (unitless)
... (8 more variables)


[Chesapeake Bay Nutrients 2021] - Nutrients from CTD casts conducted on R/V Hugh R. Sharp cruise HRS2110 in the Chesapeake Bay during August 2021 (Nitrite Oxidation in Oxygen Minimum Zones)

Summary:
This dataset includes nutrient data from R/V Hugh R. Sharp cruise HRS2110 in the Chesapeake Bay during August 2021.

cdm_data_type = Other
VARIABLES:
Cast (unitless)
Station (unitless)
Date (unitless)
Latitude (decimal degrees)
Longitude (decimal degrees)
Depth (meters (m))
NH4 (micromolar (uM))
NH4_stdev (micromolar (uM))
NO2 (micromolar (uM))
NO2_stdev (micromolar (uM))
NO3 (micromolar (uM))
NO3_stdev (micromolar (uM))
Urea (micromolar (uM))
Urea_stdv (micromolar (uM))


[Chesapeake Bay Nutrients 2022] - Nutrients from CTD casts conducted on R/V Hugh R. Sharp cruise HRS2212 in the Chesapeake Bay during August 2022 (Nitrite Oxidation in Oxygen Minimum Zones)

Summary:
This dataset includes nutrient data from R/V Hugh R. Sharp cruise HRS2212 in the Chesapeake Bay during August 2022.

cdm_data_type = Other
VARIABLES:
Cast (unitless)
Station (unitless)
Date (unitless)
Latitude (decimal degrees)
Longitude (decimal degrees)
Depth (meters (m))
NH4 (micromolar (uM))
NH4_stdev (micromolar (uM))
NO2 (micromolar (uM))
NO2_stdev (micromolar (uM))
NO3 (micromolar (uM))
NO3_stdev (micromolar (uM))


[chl_a_3m] - Chlorophyll-a on F/V Sea Eagle and F/V Frosti salmon trawl cruises in the Northeast Pacific in 2000 as part of the U.S. GLOBEC program (NEP project) (U.S. GLOBEC Northeast Pacific)

Summary:
Chlorophyll-a on F/V Sea Eagle and F/V Frosti salmon trawl cruises in the Northeast Pacific in 2000 as part of the U.S. GLOBEC program (NEP project)

cdm_data_type = Other
VARIABLES:
cruise_id (dimensionless)
ship (dimensionless)
yr (dimensionless)
timezone (hours)
cast (dimensionless)
sta_std (dimensionless)
latitude (degrees_north)
longitude (degrees_east)
depth_w (Depth, meters)
chl_a (Concentration Of Chlorophyll In Sea Water, ug/L)
phaeo (ug/L)
month_local (dimensionless)
day_local (dimensionless)
time_local (dimensionless)
inst (dimensionless)
depth (m)
comments (dimensionless)


[chlor_phaeo] - Extracted Chlorophyll and Phaeopigment data collected from R/V Endeavor cruises EN259, EN262, EN264, EN266, and EN267II in the Gulf of Maine and Georges Bank in 1995 as part of the U.S. GLOBEC program (GB project) (U.S. GLOBEC Georges Bank)

Summary:
Extracted Chlorophyll and Phaeopigment data collected from R/V Endeavor cruises EN259, EN262, EN264, EN266, and EN267II in the Gulf of Maine and Georges Bank in 1995 as part of the U.S. GLOBEC program.

cdm_data_type = Other
VARIABLES:
cruiseid
leg
cast
day_local
month_local
time_local (HHmm)
year
latitude (degrees_north)
longitude (degrees_east)
depth (m)
chl_a (Concentration Of Chlorophyll In Sea Water, micrograms/liter)
phaeo (micrograms/liter)
chl_a_20u (Concentration Of Chlorophyll In Sea Water, micrograms/liter)
phaeo_20u (micrograms/liter)


[chloro_bottle] - 1995 and 1996 fairly raw chlorophyll data, Georges Bank collected from the GLOBEC Broadscale cruises from the Gulf of Maine and Georges Bank (GB project) (U.S. GLOBEC Georges Bank)

Summary:
Raw Extracted Chlorophyll Data from Broadscale CTD stations in the Gulf of Maine, 1995 and 1996.

cdm_data_type = Other
VARIABLES:
cruiseid
year
cast
station_std (integer)
day_local (1 to 31)
month_local (1 to 12)
time_local
yrday_local
latitude (degrees_north)
longitude (degrees_east)
bottle
depth (m)
fraction (microns)
chl_a (Concentration Of Chlorophyll In Sea Water, micrograms/liter)
chl_a_avg (Concentration Of Chlorophyll In Sea Water, micrograms/liter)


[chloro_bottle_ctd] - 1995 and 1996 temperature, salinity and fluorescence data, GLOBEC Georges Bank Broadscale cruises from the Gulf of Maine and Georges Bank (GB project) (U.S. GLOBEC Georges Bank)

Summary:
1995 and 1996 temperature, salinity and fluorescence data, GLOBEC Georges Bank Broadscale cruises from the Gulf of Maine and Georges Bank

cdm_data_type = Other
VARIABLES:
cruiseid
year
cast
month_local (1 to 12)
day_local (1 to 31)
time_local
yrday_local
latitude (degrees_north)
longitude (degrees_east)
depth_w (Depth, meters)
depth_ (Depth, meters)
station_std (integer)
bottle
press (decibars)
temp (Temperature, degrees Centigrade)
cond_mM (Cond M M, millimhos per centimeter)
sal ((unitless - PSU))
flvolt (volts)


[chloro_Daly] - Chlorophyll data (CTD water bottle data) from ARSV Laurence M. Gould cruise LMG0203 in the Southern Ocean in 2002 (SOGLOBEC project) (U.S. GLOBEC Southern Ocean)

Summary:
Chlorophyll data (CTD water bottle data) from ARSV Laurence M. Gould cruise LMG0203 in the Southern Ocean in 2002 (SOGLOBEC project)

cdm_data_type = Other
VARIABLES:
cruiseid
year
station
cast
yrday_gmt (YYY)
time_gmt (HHmm)
latitude (degrees_north)
longitude (degrees_east)
event
depth (m)
chl_a (Concentration Of Chlorophyll In Sea Water, ug/l)
phaeo (ug/l)


[chloro_Vernet] - Chlorophyll data from bottles, buckets, and ice from RVIB Nathaniel B. Palmer cruises NBP0103, NBP0104, NBP0202, and NBP0204 in the Southern Ocean from 2001-2002 (SOGLOBEC project) (U.S. GLOBEC Southern Ocean)

Summary:
Chlorophyll data from bottles, buckets, and ice from RVIB Nathaniel B. Palmer cruises NBP0103, NBP0104, NBP0202, and NBP0204 in the Southern Ocean from 2001-2002 (SOGLOBEC project)

cdm_data_type = Other
VARIABLES:
cruiseid
year
station_desc
station
cast
grid_line (kilometers)
grid_sta (kilometers)
yrday_gmt (YYY.Y)
latitude (degrees_north)
longitude (degrees_east)
event
bottle
depth (m)
chl_a (Concentration Of Chlorophyll In Sea Water, micrograms/liter)
phaeo (micrograms/liter)


[Chlorophyll a fluorometry] - Fluorometric measurements of chlorophyll a from R/V Roger Revelle cruise RR2201 in the Eastern Indian Ocean (Argo Basin) during February 2022 (Collaborative Research: Mesoscale variability in nitrogen sources and food-web dynamics supporting larval southern bluefin tuna in the eastern Indian Ocean)

Summary:
This dataset contains fluorometric measurements of chlorophyll a from cruise RR2201 on R/V Roger Revelle (BLOOFINZ-IO, January-March 2022) in the Argo Basin region off NW Australia.

cdm_data_type = Other
VARIABLES:
Cruise (unitless)
Event (unitless)
time (Iso_datetime_utc, seconds since 1970-01-01T00:00:00Z)
latitude (degrees_north)
longitude (degrees_east)
Cycle_Day (unitless)
CTD_Cast (unitless)
depth (m)
Chla (milligrams per cubic meter (mg m-3))
Phaeo (milligrams per cubic meter (mg m-3))
Chl_Integr (milligrams per square meter (mg m-2))


[Chlorophyll-a concentrations in seawater near the BATS station, cruises AE2113 and AE2303] - Chlorophyll-a concentrations in seawater collected near the BATS station during R/V Atlantic Explorer cruises AE2113 (July 2021) and AE2303 (January 2023) (Collaborative Research: Seasonal Variability in refractory dissolved organic carbon fluxes associated with primary marine aerosol emitted from the oceans)

Summary:
This dataset includes the concentrations of Chlorophyll a (Chl a) determined in 0.2 µm-filtered seawater samples collected from the Bermuda Atlantic Time-series Study (BATS) station during a summer cruise in 2021 and a winter cruise in 2023. The Chl a concentration in each sample was quantified by fluorescence under subdued lighting using a Turner Designs model AU-10 fluorometer by Dr. Joanna Kinsey. This dataset was compiled by Dr. Lei Xue under the supervision of Dr. David Kieber at the State University of New York, College of Environmental Science and Forestry. These data were used to evaluate the seasonal variation of primary productivity at the BATS station. This work is part of a larger study to understand the seasonal variability in the fraction of refractory organic carbon in primary marine aerosol at the BATS station.

cdm_data_type = Other
VARIABLES:
Cruise_ID (unitless)
time (Sampling_iso_datetime_utc, seconds since 1970-01-01T00:00:00Z)
CTD_Filename (unitless)
latitude (degrees_north)
longitude (degrees_east)
Station (unitless)
Cast (unitless)
CTD_Bottle (unitless)
Salinity (part per thousand (ppt))
Temperature (degree Celsius)
depth (Sampling_depth, m)
Volume_Filtered (milliliter (ml))
Dilution_Factor (unitless)
Extraction_Volume (milliliter (ml))
Chl_a (microgram per liter (ug/L))


[Chlorophyll-a] - Size-fractionated chlorophyll-a data from samples collected during R/V Savannah cruises conducted in the South Atlantic Bight off the coast of Georgia from 2015-2017 (RUI: Vitamin B12 and nitrogen regulation of oceanic dimethylsulfoniopropionate and dimethylsulfide)

Summary:
Size-fractionated chlorophyll-a data collected during several R/V Savannah cruises conducted from 2015 to 2017 along a transect from shelf waters to oligotrophic waters in the South Atlantic Bight off the coast of Georgia (Navy Op Area NA06).

cdm_data_type = Other
VARIABLES:
Cruise_ID (unitless)
Station_ID (unitless)
UTC_Date (unitless)
UTC_Time (unitless)
time (ISO Date Time UTC, seconds since 1970-01-01T00:00:00Z)
latitude (degrees_north)
longitude (degrees_east)
Bottom_Depth (meters (m))
depth (m)
Total_Chl_a (Concentration Of Chlorophyll In Sea Water, micrograms per liter (ug/L))
gt_63_um (micrograms per liter (ug/L))
bw_63_20_um (micrograms per liter (ug/L))
lt_20_um (micrograms per liter (ug/L))


[chlorophyll] - Chlorophyll data from R/V Endeavor cruises EN321 and EN325 to Georges Bank in 1999 as part of the U.S. GLOBEC program (GB project) (U.S. GLOBEC Georges Bank)

Summary:
Chlorophyll data from R/V Endeavor cruises EN321 and EN325 to Georges Bank in 1999 as part of the U.S. GLOBEC program.

cdm_data_type = Other
VARIABLES:
cruiseid
year
cast
latitude (degrees_north)
longitude (degrees_east)
depth (m)
chl_a (Concentration Of Chlorophyll In Sea Water, micrograms/liter)
chl_a_stderr (Concentration Of Chlorophyll In Sea Water)
phaeo (micrograms/liter)
phaeo_stderr


[chlorophyll] - Extracted chlorophyll data from CTD rosette bottles from R/V Thomas G. Thompson and R/V Kilo Moana cruises TN277, KM1301, KM1312 in the Eastern North Pacific Ocean from 2012-2013 (POWOW project) (Seasonal and decadal changes in temperature drive Prochlorococcus ecotype distribution patterns)

Summary:
Extracted chlorophyll concentrations from POWOW1 (TN277), POWOW2 (KM1301), and POWOW3 (KM1312) cruises. POWOW1 data include total chlorophyll (>0.22 um), >2 um, and >20 um. POWOW2 and POWOW3 data include total chlorophyll (>0.22 um) and >0.8 um.

cdm_data_type = Other
VARIABLES:
cruise_name (text)
cast (unitless)
latitude (degrees_north)
longitude (degrees_east)
depth_w (Depth, meters)
month_utc (mm (01 to 12))
day_utc (dd (01 to 31))
year (unitless)
time_utc (HHMM.mm)
time (ISO Date Time UTC, seconds since 1970-01-01T00:00:00Z)
depth (m)
bot (unitless)
chl_tot (mg/m^3)
chl_2um (mg/m^3)
chl_20um (mg/m^3)
chl_0d8um (mg/m^3)


[chlorophyll_a] - Chlorophyll-a concentration in microcosm experiments from samples collected by R/V E.O. Wilson in the Gulf of Mexico, Alabama (En-Gen DMSP Cycling project) (En-Gen: A Functional Genomics Approach to Organic Sulfur Cycling in the Ocean)

Summary:
Chlorophyll-a measurements from control and experimental microcosms from the Dauphin Island Cubitainer Experiment (DICE).

cdm_data_type = Other
VARIABLES:
exp_id (text)
latitude (degrees_north)
longitude (degrees_east)
site_desc (text)
exp_day (unitless)
month (mm (01 to 12))
day (dd (01 to 31))
year (unitless)
microcosm (unitless)
microcosm_type (text)
chl_a_mean (Concentration Of Chlorophyll In Sea Water, micrograms/Liter)
chl_a_sd (micrograms/Liter)
replicate (unitless)
vol_filt (mL)
vol_ext (mL)
fluor (fluorometer reading)
chl_a (Concentration Of Chlorophyll In Sea Water, micrograms/Liter)


[CICLOPS TMR hydrography data] - Hydrography sensor data from trace metal rosette (TMR) casts at 26 stations near coastal Antarctica during RVIB Nathaniel B. Palmer cruise NBP18-01 from Dec 2017 to Feb 2018 (Collaborative Research:  Cobalamin and Iron Co-Limitation Of Phytoplankton Species  in Terra Nova Bay)

Summary:
This dataset provides the trace metal rosette (TMR) hydrography data from the Amundsen and Ross Seas, including from Terra Nova Bay, collected onboard the R/V Nathaniel B. Palmer as part of the Cobalamin and Iron Co-Limitation of Phytoplankton Species (CICLOPS) expedition from December 11, 2017 to March 3, 2018. Sensor information and calibration dates are available in the report 'NBP1801_Data_Report.pdf' available as a supplemental file.

cdm_data_type = Other
VARIABLES:
Latitude (degrees_north)
longitude (degrees_east)
time (Tmr_start_datetime_utc, seconds since 1970-01-01T00:00:00Z)
Station (unitless)
Pressure (decibar)
depth (m)
Temperature (degrees Celsius)
Conductivity (millisiemens per centimeter (mS/cm))
Oxygen (milliliter per liter (mL/L))
Fluorescence (milligrams per cubic meter (mg/m^3))
Beam (percent (%))
PAR_Irradiance (watts per square meter (W/m^2))
Salinity (practical salinity unit (PSU))


[ciliate abundance and biomass] - Abundance and biomass of ciliates from inverted microscope counts from samples taken on R/V Atlantic Explorer cruises AE1102, AE1118, AE1206, AE1219 in the Sargasso Sea, Bermuda Atlantic Time-Series Station in 2011-2012 (Trophic BATS project) (Plankton Community Composition and Trophic Interactions as Modifiers of Carbon Export in the Sargasso Sea 	)

Summary:
Abundance and biomass of ciliates from inverted microscope counts from samples taken on R/V Atlantic Explorer cruises AE1102, AE1118, AE1206, AE1219 in the Sargasso Sea, Bermuda Atlantic Time-Series Station in 2011-2012.

cdm_data_type = Other
VARIABLES:
cruise_id (dimensionless)
cast (dimensionless)
station (dimensionless)
location_description (dimensionless)
latitude (degrees_north)
longitude (degrees_east)
depth (m)
total_biomass (nanograms C per Liter)
taxon (dimensionless)
abundance (cells per Liter)
abund_upper_95pcnt_CI (cells per Liter)
abund_lower_95pcnt_CI (cells per Liter)
biomass (nanograms C per Liter)


[Clam Outplants] - Clam outplant experiments conducted in Seadrift and Bolinas Lagoon for 2015 (RAPID: A rare opportunity to examine overcompensation resulting from intensive harvest of an introduced predator)

Summary:
Clam outplants in Seadrift and Bolinas Lagoons (Central California coast, shallow subtidal (<2 m depth)) for 2015.

cdm_data_type = Other
VARIABLES:
lagoon (unitless)
site (unitless)
latitude (degrees_north)
longitude (degrees_east)
date (unitless)
species_code (unitless)
species (unitless)
size (millimeters (mm))
outcome_code (unitless)
outcome (unitless)


[Clear Lake 800-yr reconstruction] - Record of d2H of dinosterol variability in down core lake sediments from Clear Lake, Palau (Do Parallel Patterns Arise from Parallel Processes?)

Summary:
Record of d2H of dinosterol variability in down core lake sediments from Clear Lake, Palau.

cdm_data_type = Other
VARIABLES:
location (unitless)
latitude (degrees_north)
longitude (degrees_east)
core_depth (centimeters (cm))
age (unitless)
dDdino (D Ddino, per mil)
dDdino_stdev (D Ddino Stdev, per mil)


[CliOMZ AT50-10 AUV Clio Data: Clio Dive Log] - Log file from AUV Clio taken on R/V Atlantis (CliOMZ AT50-10 expedition) from Golfito Costa Rica to San Diego USA in May-June 2023. (Collaborative Research: Underexplored Connections between Nitrogen and Trace Metal Cycling in Oxygen Minimum Zones Mediated by Metalloenzyme Inventories)

Summary:
This dataset contains the dive log from Autonomous Underwater Vehicle (AUV) Clio which was obtained during the CliOMZ AT50-10 expedition onboard R/V Atlantis from May-June 2023. The dataset contains metadata specifying sampling characteristics for each dive.

cdm_data_type = Other
VARIABLES:
CRUISE_ID (unitless)
PROGRAM_ID (unitless)
CLIO_DIVE_ID (unitless)
UID (unitless)
STATION (unitless)
DEPTH_STATION_TYPE (unitless)
DEPTH_STATION_ORDER (unitless)
DEPTH_STATION_PARAMETERS (meters)
BAY (unitless)
SUPR_UNIT (unitless)
SUPR_VALVE (unitless)
SUPR_FILTER_INCUBATOR (unitless)
FILTERS (unitless)
STOP_CONDITION_TIME_VOL_RATE (minutes (time), liters (volume), liters per minute (rate))
STOP_TIME (minutes)
STOP_VOLUME (liters)
STOP_RATE (liters per minute)
INCUBATOR_PURGE_TIME (minute)
INCUBATOR_FILL_TIME (minute)
SAMPLE_START_TIME_UTC (UTC)
depth (Actual_depth_m, m)
VOLUME_FILTERED_L (liters)
TIME_SPENT_FILTERING_min (minutes)
VEHICLE_COMMENT (unitless)
SUBMERGE_TIME_UTC (seconds since 1970-01-01T00:00:00Z)
... (8 more variables)


[CliOMZ AT50-10 AUV Clio Data: Processed first profiles] - Processed first profiles of sensor data from AUV Clio taken on R/V Atlantis (CliOMZ AT50-10 expedition) from Golfito Costa Rica to San Diego USA in May-June 2023. (Collaborative Research: Underexplored Connections between Nitrogen and Trace Metal Cycling in Oxygen Minimum Zones Mediated by Metalloenzyme Inventories)

Summary:
This is oceanographic profiles generated by Clio, an Autonomous Underwater Vehicle (AUV) focused on biogeochemical sampling. Clio was deployed on the R/V Atlantis CliOMZ AT50-10 expedition from Golfito, Costa Rica to San Diego, USA from May - June of 2023. The dataset contains processed profiling sensor data from the initial vehicle descent (i.e., the “first profile”). This profile data contains all sensors binned into 0.5 m depth increments.

cdm_data_type = Other
VARIABLES:
CRUISE_ID (unitless)
DIVE_ID (unitless)
time (Submerge_time_utc, seconds since 1970-01-01T00:00:00Z)
latitude (Submerge_lat, degrees_north)
longitude (Submerge_lon, degrees_east)
LeftBinDepth (meters)
RightBinDepth (meters)
CTDtemp (celsius)
CTDsal (psu, practical salinity unit)
CTDpress (decibar)
CTDconduct (Siemens/meter)
OptO2 (micromolar , uM)
FluoChl (micrograms per deciliter)
FluoTurb (Nephelometric Turbidity unit)
TransCalcBeam (m^-1)
SunaNitrate (micromolar, uM)


[CliOMZ AT50-10 AUV Clio Data: Tracer summary] - Summaries of tigerclaw and bushbaby tracers from AUV Clio taken on R/V Atlantis (CliOMZ AT50-10 expedition) from Golfito Costa Rica to San Diego USA in May-June 2023. (Collaborative Research: Underexplored Connections between Nitrogen and Trace Metal Cycling in Oxygen Minimum Zones Mediated by Metalloenzyme Inventories)

Summary:
This dataset contains processed profiling sensor data from Autonomous Underwater Vehicle (AUV) Clio which was obtained during the CliOMZ AT50-10 expedition onboard R/V Atlantis from May-June 2023. The mean and standard deviation are given for each sensor parameter during the period in which a particular SUPR sample was taken.

cdm_data_type = Other
VARIABLES:
CRUISE_ID (unitless)
DIVE_ID (unitless)
UID (unitless)
time (Submerge_time_utc, seconds since 1970-01-01T00:00:00Z)
latitude (Submerge_lat, degrees_north)
longitude (Submerge_lon, degrees_east)
Tracer (unitless)
Valve (unitless)
MeanCTDTemp (celsius)
StdCTDTemp (celsius)
MeanCTDSal (psu)
StdCTDSal (psu)
MeanCTDPressure (decibar)
StdCTDPressure (decibar)
MeanCTDConductivity (Siemens / meter)
StdCTDConductivity (Siemens / meter)
MeanO2conc (micromolar, uM)
StdO2 (micromolar, uM)
MeanChl (micrograms per deciliter)
StdChl (micrograms per deciliter)
MeanTurb (Nephelometric Turbidity unit)
StdTurb (Nephelometric Turbidity unit)
MeanTransAtten (m^-1)
StdTransAtten (m^-1)
MeanNitrate (micromolar, uM)
StdNitrate (micromolar, uM)


[CliOMZ AT50-10 Trace Metal Rosette Log] - Trace metal rosette log of samples taken on board of the R/V Atlantis during the CliOMZ AT50-10 expedition from Golfito, Costa Rica to San Diego, USA that occurred in May - June of 2023. (Collaborative Research: Underexplored Connections between Nitrogen and Trace Metal Cycling in Oxygen Minimum Zones Mediated by Metalloenzyme Inventories)

Summary:
This is the log for the trace metal rosette niskin bottles deployed on the R/V Atlantis CliOMZ AT50-10 expedition from Golfito Costa Rica to San Diego USA that occurred in May - June of 2023.  The log contains metadata associated with each rosette deployment, including location, bottle depth, and time. The rosette was launched on 1/4" kevlar line spooled on a MASH2K winch from the East Coast Winch Pool. The Science party included members from WHOI, UCSB, UTGRV, and Clark University.

cdm_data_type = Other
VARIABLES:
Cruise_ID (unitless)
Station_number (unitless)
Cast_number (unitless)
Start_date_UTC (unitless)
Start_time_UTC (unitless)
time (Iso_datetime_utc_start, seconds since 1970-01-01T00:00:00Z)
Start_Lat (decimal degrees)
Start_Long (decimal degrees)
Cast_total_depth_m (m)
Niskin (unitless)
program_depth (meter (m))
depth (Real_depth, m)
Notes (unitless)
sample_number (unitless)


[CliOMZ AT50-10 Underway Sampling Log] - Log for the samples taken using the Underway system on board of the R/V Atlantis during the CliOMZ AT50-10 expedition from Golfito, Costa Rica to San Diego, USA that occurred in May - June of 2023. (Collaborative Research: Underexplored Connections between Nitrogen and Trace Metal Cycling in Oxygen Minimum Zones Mediated by Metalloenzyme Inventories)

Summary:
This is the log for the samples taken using the Underway system on board of the R/V Atlantis during the CliOMZ AT50-10 expedition from Golfito, Costa Rica to San Diego, USA that occurred in May - June of 2023.  The log contains metadata associated with the locations where samples were collected, including coordinates, depth, time, volume filtered, filter type, and subsamples' fractions. A Geotech in-line acrylic filter holder connected to a flowmeter were attached to the Underway water flow and particulates were collected. The Science party included members from WHOI, UCSB, UTGRV, and Clark University

cdm_data_type = Other
VARIABLES:
Cruise_ID (unitless)
Station_number (unitless)
Start_Date_UTC (UTC)
Start_Time_UTC (UTC)
End_Date_UTC (UTC)
End_Time_UTC (UTC)
Start_Lat (decimal degrees)
Start_Long (decimal degrees)
End_Lat (decimal degrees)
End_Long (decimal degrees)
depth (m)
Sampling_device (unitless)
At_station_or_transit (unitless)
Filter_type (unitless)
Volume_filtered (liters (L))
DEPLOYMENT_COMMENTS (unitless)
SAMPLE_PRFEIX (unitless)
SUPOR_0_2_PROTEIN1 (unitless)
SUPOR_0_2_PROTEIN2 (unitless)
SUPOR_0_2_DNA1 (unitless)
SUPOR_0_2_DNA2 (unitless)
... (12 more variables)


[Closed Mesocosm 15N Tracer] - Closed Oyster Mesocosm 15N Tracer (Oyster Reef N2O Emission project) (Microbial Regulation of Greenhouse Gas N2O Emission from Intertidal Oyster Reefs)

Summary:
Closed Oyster Mesocosm 15N Tracer

cdm_data_type = Other
VARIABLES:
Incubation (unitless)
Time_Hours (hours)
O1_15N2 (O1 15 N2, permil (/mL))
O1_N2O (O1 N2 O, nanomole (nM))
O1_O2 (mgL-1)
O1_Sed_15N (O1 Sed 15 N, permil (/mL))
O2_15N2 (O2 15 N2, permil (/mL))
O2_N2O (O2 N2 O, nanomole (nM))
O2_O2 (mgL-1)
O2_Sed_15N (O2 Sed 15 N, permil (/mL))
O3_15N2 (O3 15 N2, permil (/mL))
O3_N2O (O3 N2 O, nanomole (nM))
O3_O2 (mgL-1)
O3_Sed_15N (O3 Sed 15 N, permil (/mL))
C1_15N2 (C1 15 N2, permil (/mL))
C1_N2O (C1 N2 O, nanomole (nM))
C1_O2 (mgL-1)
C1_Sed_15N (C1 Sed 15 N, permil (/mL))
C2_15N2 (C2 15 N2, permil (/mL))
C2_N2O (C2 N2 O, nanomole (nM))
C2_O2 (mgL-1)
C2_Sed_15N (C2 Sed 15 N, permil (/mL))
C3_15N2 (C3 15 N2, permil (/mL))
C3_N2O (C3 N2 O, nanomole (nM))
C3_O2 (mgL-1)
C3_Sed_15N (C3 Sed 15 N, permil (/mL))


[Clownfish predatory posture] - Quantification of a previously undescribed fast-start of larval clownfish targeting copepod prey: predatory posture, speed and acceleration from high-speed video, July 2015 (The Drive to Survive: Copepods vs Ichthyoplankton)

Summary:
Posture, strike speed, and acceleration of clownfish larval attack on copepods, from high-speed videos, June-July 2015. Results of these data are published in Fashingbauer et al (in revision, J. Exp. Biol.) and Robinson et al (accepted, MEPS).

cdm_data_type = Other
VARIABLES:
TRIAL_DATE (unitless)
BIRTHDATE (unitless)
DPH (days post hatch)
FISH_AGE_CLASS (unitless)
PREY_STAGE_CLASS (unitless)
STAGE_CATEGORY (unitless)
CLIP_ID (unitless)
CLIP_START (unitless)
CLIP_END (unitless)
CLIP_DURATION (# of frames)
PIXEL_TO_MM (pixels per millimeter)
BODY_LENGTH (milllimeters)
FRAME_APPROACH_START (frame #)
APPROACH_DURATION (seconds)
FRAME_T0_STRIKE (frame #)
STRIKE_DISTANCE_PIXEL (pixels)
STRIKE_DISTANCE_MM (milllimeters)
TIME_FROM_T0_TO_CAPTURE (milliseconds)
PEAK_STRIKE_SPEED (millimeters/second)
STRIKE_SPEED_T_2ms (millimeters/second)
STRIKE_SPEED_T1ms (millimeters/second)
STRIKE_SPEED_T3ms (millimeters/second)
STRIKE_SPEED_T5ms (millimeters/second)
STRIKE_SPEED_T7ms (millimeters/second)
STRIKE_SPEED_T9ms (millimeters/second)
... (31 more variables)


[CO2 x temperature effects on Menidia menidia offspring] - CO2 × temperature specific early life survival and growth of Menidia menidia assessed by 5 factorial experiments (Collaborative research: Understanding the effects of acidification and hypoxia within and across generations in a coastal marine fish)

Summary:
In five individual rearing experiments, wild-caught M. menidia adults were spawned to test offspring sensitivity to factorial combinations of pCO2 (nominal: 400, 2200, 4000, and 6000 \u00b5atm) and temperature (17, 20, 24, and 28 \u00b0C) through measurements of early-life survival and growth. For experiment 1, adults were collected from Poquot Beach (40.947376, -73.10258), and the experiment took place at Stony Brook University\u2019s Flax Pond Marine Laboratory. For experiments 2\u20135, spawning adults were collected from Mumford Cove (41.321526, -72.015247), and experiments were conducted in the Rankin Seawater Facility at University of Connecticut\u2019s Avery Point campus. The experiments quantified two survival and two growth traits for each replicate and CO2 \u00d7 temperature treatment; embryo survival (fertilization to 1 dph), larval survival (1 dph to experiment termination), size (SL) at hatch (1 dph), and growth rate ((SL at end of experiment \u2013 SL 1dph)/number days reared post hatch). These data are published in: Murray, C.S., and Baumann, H. (2018) You Better Repeat It: Complex CO2 \u00d7 Temperature Effects in Atlantic Silverside Offspring Revealed by Serial experimentation. Diversity. doi:10.3390/d10030069.

cdm_data_type = Other
VARIABLES:
experiment (unitless)
species (unitless)
adult_collection_site (unitless)
latitude (degrees_north)
longitude (degrees_east)
tank (unitless)
replicate (unitless)
temperature (degrees Celsius)
pH (Sea Water Ph Reported On Total Scale, pH NBS)
pCO2 (P CO2, atm)
fertilization_date (unitless)
hatch_sample_date (unitless)
hatch_sample_age (days)
final_sample_date (unitless)
final_sample_age (days)
... (5 more variables)


[Coastal intertidal temperatures] - Intertidal temperatures measured via data loggers deployed at 19 rocky intertidal sites in California, USA and Baja California, Mexico from spring 2022 to fall 2023 (Predicting impacts of coastal species redistribution in a changing climate)

Summary:
Coastal zones are some of the most productive and most threatened ecosystems on Earth, yet our ability to predict their vulnerability or resilience is limited due to the highly dynamic nature of these habitats. Importantly, surface temperatures measured at broad scales (e.g., by satellites) cannot capture onshore temperatures which vary at meso- and micro-scales due to, e.g., aspect, solar radiation, waves, etc. We monitored intertidal temperatures via data loggers deployed at 19 rocky intertidal sites in California, USA and Baja California, Mexico. Loggers were deployed at 1.0 meter (m) above MLLW (mean lower-low water) at all sites and at 0.5 and 1.5 m at a subset of sites. At each site and tide height (for sites with multiple loggers), completeness of the temperature record varies but most provide continuous records for up to ~18 months from spring 2022 to fall 2023.

cdm_data_type = Other
VARIABLES:
Site_Name (unitless)
Latitude (degrees_north)
longitude (degrees_east)
Elevation (meters above mean lower-low water)
ISO_DateTime_PDT (unitless)
time (Iso_datetime_utc, seconds since 1970-01-01T00:00:00Z)
Temperature (degrees Celsius)


[Coastal SAR11 Physiochemical data] - Physiochemical data from samples collected along the coast of Louisiana, USA during 2018 (Collaborative Research: EAGER: Salinity-based selection between sister clades of abundant coastal bacterioplankton)

Summary:
Physiochemical data from samples collected along the coast of Louisiana, USA during 2018.

cdm_data_type = Other
VARIABLES:
Site (unitless)
latitude (degrees_north)
longitude (degrees_east)
Date (unitless)
Time_Central (unitless)
Offset (unitless)
Time_UTC (unitless)
Temp (Temperature, degrees Celsius)
Cond (ms/cm)
Salinity (Sea Water Practical Salinity, unitless)
pH (Sea Water Ph Reported On Total Scale, unitless)
Cell_counts (cells/mL)
PO4 (Mass Concentration Of Phosphate In Sea Water, umol/L)
SiOH4 (Si OH4, umol/L)
NO3 (Mole Concentration Of Nitrate In Sea Water, umol/L)
NO2 (Mole Concentration Of Nitrite In Sea Water, umol/L)
NH4 (Mole Concentration Of Ammonium In Sea Water, umol/L)
time (ISO Date Time UTC, seconds since 1970-01-01T00:00:00Z)


[coccolithophore-associated biopolymers for radionuclides] - Coccolithophore-associated organic biopolymers for fractionating particle-reactive radionuclides (234Th, 233Pa, 210Pb, 210Po, and 7Be) (Biopolymers as carrier phases for selected natural radionuclides (of Th, Pa, Pb, Po, Be) in diatoms and coccolithophores)

Summary:
Laboratory incubation experiments using the coccolithophore Emiliania huxleyi were conducted in the presence of 234Th, 233Pa, 210Pb, 210Po, and 7Be to differentiate radionuclide uptake to the CaCO3 coccosphere from coccolithophore-associated biopolymers.

cdm_data_type = Other
VARIABLES:
Biopolymer_Fraction (unitless)
Th234_Activity (unitless)
Pa233_Activity (unitless)
Pb210_Activity (unitless)
Po210_Activity (unitless)
Be7_Activity (unitless)
Protein_Amount (microMole Carbon (uM-C))
TCHO_Amount (microMole Carbon (uM-C))
URA_Amount (microMole Carbon (uM-C))
Protein_C_TCHO_C (unitless)
URA_pcnt_TCHO (unitless)


[Cocos Ridge C14 Data] - Radiocarbon (C14) calendar ages measured on pelagic foraminifera species collected from sediment cores from the Cocos Ridge (Eastern Equatorial Pacific) acquired during cruise SR2113 between November - December 2021. (Collaborative Research: New approaches to study calcium carbonate dissolution on the sea floor and its impact on paleo-proxy interpretations)

Summary:
These data include radiocarbon (C14) calendar ages measured on pelagic foraminifera species collected from sediment cores from the Cocos Ridge in the Eastern Equatorial Pacific. This cruise was aboard the R/V Sally Ride between 2021-11-20 and 2021-12-20. Instruments used were a multicorer and accelerator mass spectrometry . These data contributed to our understanding of the carbonate chemistry system in this region, particularly regarding carbonate dissolution in deep-sea sediments. Patrick Rafter (UC Irvine) measured C14 calendar ages.

cdm_data_type = Other
VARIABLES:
Station (unitless)
Date (unitless)
Latitude (degrees_north)
longitude (degrees_east)
depth (Water_column_depth, m)
Sediment_Depth (centimeters (cm))
Foram_sp (unitless)
AphiaID (unitless)
C14_age (year (yr))


[Cocos Ridge Porewater Data] - In situ porewater data from the Cocos Ridge (Eastern Equatorial Pacific) acquired during cruise SR2113 between November - December 2021 (Collaborative Research: New approaches to study calcium carbonate dissolution on the sea floor and its impact on paleo-proxy interpretations)

Summary:
These data include porewater measurements with a focus on carbonate chemistry from the Cocos Ridge in the Eastern Equatorial Pacific. This cruise was aboard the R/V Sally Ride between 2021-11-20 and 2021-12-20. Instruments used were a novel in situ porewater sampler, spectrophotometer, Liaison autosampler coupled to a Picarro cavity ring-down spectrometer, Inductively Coupled Plasma - Mass Spectrometer, and Inductively Coupled Plasma - Optical Emission Spectrometer. These data contributed to our understanding of the carbonate chemistry system in this region, particularly regarding carbonate dissolution in deep-sea sediments. Xuewu Liu and Kalla Fleger, members of the Robert Byrne lab at University of South Florida, measured alkalinity and pH; Nick Rollins and Jaclyn Cetiner, members of the Will Berelson lab at University of Southern California, measured DIC and delta 13C of DIC; Matt Quinan of the Berelson lab measured silica; Jaclyn Cetiner (USC) and Frank Pavia (Caltech) measured manganese. Jaclyn Cetiner (USC) and Anna Waldeck (Northwestern) measured calcium and strontium.

cdm_data_type = Other
VARIABLES:
Sample_ID (unitless)
Station (unitless)
Date (unitless)
Lat (degrees_north)
longitude (degrees_east)
Water_Column_Depth (meters (m))
Sediment_Depth (centimeters (cm))
Alkalinity (micromoles per kilogram (umol/kg))
pH (total pH scale)
Silica (micromolar (uM))
DIC (micromoles per kilogram (umol/kg))
d13C_DIC (per mil (0/00))
Manganese (micromoles per kilogram (umol/kg))
Calcium (millimoles per kilogram (mmol/kg))
Strontium (micromoles per kilogram (umol/kg))
Omega_calcite (unitless)


[Cocos Ridge Solid Phase Data] - Solid phase measurements of sediment cores from the Cocos Ridge (Eastern Equatorial Pacific) acquired during cruise SR2113 between November - December 2021. (Collaborative Research: New approaches to study calcium carbonate dissolution on the sea floor and its impact on paleo-proxy interpretations)

Summary:
These data include solid phase measurements on sediment cores from the Cocos Ridge in the Eastern Equatorial Pacific. This cruise was aboard the R/V Sally Ride between 2021-11-20 and 2021-12-20. Instruments used were a multicorer, Liaison autosampler coupled to a Picarro cavity ring-down spectrometer, and Element Analyzer coupled to a Picarro cavity ring-down spectrometer. These data contributed to our understanding of the carbonate chemistry system in this region, particularly regarding carbonate dissolution in deep-sea sediments. Sijia Dong (Caltech) and Nick Rollins (USC) measured CaCO3 (PIC) and Organic_C (POC).

cdm_data_type = Other
VARIABLES:
Station (unitless)
Date (unitless)
Latitude (degrees_north)
longitude (degrees_east)
Water_Column_Depth (meters (m))
Sediment_Depth (centimeters (cm))
Porosity (percent (%))
CaCO3 (percent (%))
Organic_C (percent (%))


[Cocos Ridge Water Column Data] - Water column data from the Cocos Ridge (Eastern Equatorial Pacific) acquired during cruise SR2113 between November - December 2021 (Collaborative Research: New approaches to study calcium carbonate dissolution on the sea floor and its impact on paleo-proxy interpretations)

Summary:
These data include water column parameters and carbonate chemistry measurements from the Cocos Ridge in the Eastern Equatorial Pacific. This cruise was aboard the R/V Sally Ride between 2021-11-20 and 2021-12-20. Instruments used were a CTD profiler, spectrophotometer, and Picarro cavity ring-down spectrometer. These data contributed to our understanding of the carbonate chemistry system in this region, particularly the water depth location of the calcite saturation horizon. Xuewu Liu and Kalla Fleger, members of the Robert Byrne lab at University of South Florida, measured alkalinity and pH;  Nick Rollins and Jaclyn Cetiner, members of the Will Berelson lab at University of Southern California, measured DIC and delta 13C of DIC.

cdm_data_type = Other
VARIABLES:
Station (unitless)
Cast (unitless)
Date (unitless)
Start_Time (unitless)
time (Iso_datetime_utc, seconds since 1970-01-01T00:00:00Z)
Latitude (degrees_north)
longitude (degrees_east)
Water_Column_Depth (meters (m))
Pressure (decibars (db))
Temperature (degrees Celcius (C))
Salinty (parts per thousand (ppt))
Oxygen (micromoles per kilogram (umol/kg))
Alkalinity (micromoles per kilogram (umol/kg))
pH (total pH scale)
DIC (micromoles per kilogram (umol/kg))
d13C_DIC (per mil (0/00))
Omega_calcite (unitless)


[cod bycatch redux gear_swimming behavior] - Cod by-catch reducing gear: video observations of fish behavior from Fishing Vessels NEC-MP2000-2 in the Gulf of Maine from 2000-2002 (NEC-CoopRes project) (Northeast Consortium: Cooperative Research)

Summary:
Cod by-catch reducing gear: video observations of fish behavior from Fishing Vessels NEC-MP2000-2 in the Gulf of Maine from 2000-2002 (NEC-CoopRes project).

cdm_data_type = Other
VARIABLES:
species
rope_interaction
net_type
behavior (unitless)
number (fish)
time_elapsed (minutes)
date_local (unitless)
day_local (unitless)
month_local (unitless)
year (unitless)
yrday_local (unitless)


[Colonization sampler log] - Dates and locations of colonization sampler deployments and recoveries from East Pacific Rise (EPR) deep-sea vents, 1998-2017 (Effects of Disturbance and Larval Supply on Communities at Hydrothermal Vents)

Summary:
This dataset dates and locations of colonization sampler deployments and recoveries from East Pacific Rise (EPR) deep-sea vents, 2006-2017.

cdm_data_type = Other
VARIABLES:
Recover_Cruise (unitless)
Vessel (unitless)
Cruise_ID (unitless)
Cruise_start (unitless)
Cruise_end (unitless)
Chf_Sci (unitless)
Vehicle (unitless)
Start (unitless)
End (unitless)
Location (unitless)
latitude (degrees_north)
longitude (degrees_east)
Site (unitless)
Habitat (unitless)
Chemistry (unitless)


[Colony level bleaching severity and mortality] - Coral bleaching severity and mortality data from patch reef 13 in Kāne'ohe Bay, O'ahu, Hawai'i from 2015 to 2022 (RAPID: Collaborative Research: Disentangling the effects of heat stress versus bleaching phenotype on coral performance)

Summary:
This dataset contains coral colony-level bleaching severity and mortality (coral genotype, bleaching phenotype, bleaching score, mortality percent) from patch reef 13 in Kāne'ohe Bay, O'ahu, Hawai'i from 2015 to 2022.

This data set was collected as part of a study of benthic community composition data from patch reef 13 and colony-level bleaching severity data. See Related Dataset "Benthic cover" for more data from this study.

Study abstract:

Increasingly frequent marine heatwaves are devastating coral reefs. Corals that survive these extreme events must rapidly recover if they are to withstand subsequent events, and long-term survival in the face of rising ocean temperatures may hinge on recovery capacity and acclimatory gains in heat tolerance over an individual's lifespan. To better understand coral recovery trajectories in the face of successive marine heatwaves, we monitored the responses of bleaching-susceptible and bleaching-resistant individuals of two dominant coral species in Hawaiʻi, Montipora capitata and Porites compressa, over a decade that included three marine heatwaves.

cdm_data_type = Other
VARIABLES:
ColonyID (unitless)
Species (units)
Bleach (unitless)
Date (unitless)
Score (units)
Phenotype
Mortality (percent  (%))


[Colony to colony interactions] - Data describing interactions between colonies on St. John, Virgin Islands in 2014. (LTREB Long-term coral reef community dynamics in St. John, USVI: 1987-2019)

Summary:
Data describing interactions between colonies on St. John, Virgin Islands in 2014.

cdm_data_type = Other
VARIABLES:
year (unitless)
season (unitless)
site (unitless)
latitude (degrees_north)
longitude (degrees_east)
transect (unitless)
meter (meters)
species (unitless)
interaction_type (unitless)
damage (unitless)
growth_asym (unitless)
height (centimeters)


[Coloration discovery] - Cyprinodon variegatus offspring growth rate from coloration discovery experiments conducted on specimens wild caught from the Atlantic in 2014 (Beyond maternal effects: Transgenerational plasticity in thermal performance)

Summary:
Cyprinodon variegatus offspring growth rate from coloration discovery experiments conducted on specimens wild caught from the Atlantic in 2014.

cdm_data_type = Other
VARIABLES:
Population (unitless)
Score (unitless)
Age (day)
Length (millimeters)
Mass (milligrams)
F (unitless)
Gmass (milligrams)
GSI (percentage)


[Community 16S rRNA gene sequences] - Accession numbers for raw sequences associated with field collections & microcosms, 2015 and 2016 (Vibrio as a model microbe for opportunistic heterotrophic response to Saharan dust deposition events in marine waters)

Summary:
Accession numbers for raw sequences associated with field collections & microcosms, 2015 and 2016

cdm_data_type = Other
VARIABLES:
BioProject (Bio Project, unitless)
study (unitless)
sample_description (unitless)
year (unitless)
num_sequences (unitless)
NCBI_link (unitless)


[Community composition of corals in Palau determined by quantitative transects] - Community composition of corals in Palau determined by quantitative transects sampled in April 2023 (Collaborative Research: How do selection, plasticity, and dispersal interact to determine coral success in warmer and more variable environments?)

Summary:
Bottlenecks in the early life-history stages of corals can shape community composition across reefs. We used photographic surveys and the deployment of tiles to capture recruit, juvenile, and adult corals at 7 sites across Palau. Photographic surveys were undertaken using two methods: a qualitative biodiversity survey (2021–2022) and quantitative transects (2023). This dataset includes the results from the quantitative transects.

cdm_data_type = Other
VARIABLES:
Site (unitless)
Latitude (degrees_north)
longitude (degrees_east)
Type (unitless)
Stage (unitless)
Transect (unitless)
Genus (unitless)
Abundance (counts of individuals in each 10 square meter transect)


[Community survey data on invertebrate and algal density] - Kelp forest community surveys on invertebrate and algal density from nearshore in Monterey and Carmel starting in 1999 (Kelp Forest Resilience project) (Kelp forest community resilience in action: adaptive responses of predators to a disease-driven food web perturbation)

Summary:
Kelp forest community surveys on invertebrate and algal density from nearshore in Monterey and Carmel starting in 1999 (Kelp Forest Resilience project)

cdm_data_type = Other
VARIABLES:
year (unitless)
site (unitless)
side (unitless)
latitude (degrees_north)
longitude (degrees_east)
zone (unitless)
transect (unitless)
depth (m)
date (unitless)
classcode (unitless)
count (count)
size (centimeters (cm))
notes (unitless)


[comparative lionfish behavior] - Behavioral observations of lionfish at native Pacific and invaded Atlantic locations (Bahamas, Cayman Islands, Guam, Philippines) from 2009-2012 (Lionfish Invasion project) (Ecological Release and Resistance at Sea: Invasion of Atlantic Coral Reefs by Pacific Lionfish)

Summary:
Behavioral observations of lionfish, with a focus on hunting activity throughout the day, at native Pacific (Guam and the Philippines) vs. invasive Atlantic locations (Bahamas and Caymans) to assess possible differences between ranges. Particular emphasis was placed on species hunted, time spent hunting and total numbers of kills and strikes. The investigators hypothesized that lionfish at invaded locations would have higher success at killing prey and spend less time hunting.

cdm_data_type = Other
VARIABLES:
basin (text)
region (text)
site (text)
latitude (degrees_north)
longitude (degrees_east)
date (unitless)
month (mm (01 to 12))
day (dd (01 to 31))
year (unitless)
time_sunrise (HH:MM)
time_sunset (HH:MM)
method (text)
time_start (HH:MM)
time_start_adjusted (HH:MM)
person (text)
location (text)
body_orientation (text)
habitat (text)
weather (text)
current_strength (text)
tagged (yes/no)
fish_id (code)
num_spines_clipped (text or numbers)
... (22 more variables)


[Compensatory growth and TGP] - Compensatory growth and TGP data from experiments conducted on juvenile Cyprinodon variegatus that were wild caught in the Atlantic during 2014 (Beyond maternal effects: Transgenerational plasticity in thermal performance)

Summary:
Compensatory growth and TGP data from experiments conducted on juvenile Cyprinodon variegatus that were wild caught in the Atlantic during 2014.

cdm_data_type = Other
VARIABLES:
Group (unitless)
Ptemp (degrees Celsius)
Otemp (Ocean Temperature, degrees Celsius)
Sex (unitless)
Maturation (count)
Initial_WK2 (millimeters)
Manipulation_WK10 (millimeters)
Compensation_WK15 (millimeters)
GSI (percent)


[Compound specific isotope data] - Compound specific isotope data of amino acids for abyssal macrofauna, megafauna, sediments, sediment traps, and in situ filtered particles at Station ALOHA off Hawaii and Station M off California from 2019 to 2020 (Collaborative Research: Assessing the relative importance of small vs large particles as sources of nutrition to abyssal communities)

Summary:
This dataset includes compound specific isotope data of amino acids for abyssal macrofauna, megafauna, sediments, sediment traps, and in situ filtered particles from off California (Station M) and Hawaii (Station ALOHA) collected from 2019 to 2020. These data were collected as part of a food web project to evaluate the relative importance of small and large particle types to abyssal communities.

cdm_data_type = Other
VARIABLES:
Sample (unitless)
Cruise (unitless)
Date_initial (unitless)
Date_final (unitless)
Site (unitless)
Latitude (degrees_north)
longitude (degrees_east)
Type (unitless)
Species (unitless)
Type_filter (unitless)
depth (m)
d15N (‰, vs AIR)
d13C (‰, vs VPDB)
ALA_N (‰, vs AIR)
GLY_N (‰, vs AIR)
THR_N (‰, vs AIR)
SER_N (‰, vs AIR)
VAL_N (‰, vs AIR)
LEU_N (‰, vs AIR)
ILE_N (‰, vs AIR)
PRO_N (‰, vs AIR)
ASX_N (‰, vs AIR)
GLX_N (‰, vs AIR)
... (42 more variables)


[Concentrations of phospholipid-linked fatty acids (PLFAs)] - Concentrations of phospholipid-linked fatty acids (PLFAs) in the surface sediments of three marsh ponds in PIE-LTER (Rowley, MA) from 2014. (Eutrophication Effects on Sediment Metabolism and Benthic Algal-bacterial Coupling: An Application of Novel Techniques in a LTER Estuary)

Summary:
Concentrations of phospholipid-linked fatty acids (PLFAs) in the surface sediments of three marsh ponds in PIE-LTER (Rowley, MA). Data were collected over 11 weeks in the summer and fall of 2014.

cdm_data_type = Other
VARIABLES:
Pond (unitless)
Week (unitless)
Season (unitless)
Tide (unitless)
Sampling_Date (unitless)
C12_0 (per mil)
iso_C13 (per mil)
anteiso_C13 (per mil)
C13_0 (per mil)
iso_C14 (per mil)
C14_0 (per mil)
iso_C15 (per mil)
anteiso_C15 (per mil)
C15_0 (per mil)
iso_C16 (per mil)
iso_16_1w9c (per mil)
iso_16_1w9t (per mil)
iso_16_1w7 (per mil)
C16_0 (per mil)
methyl_10_C16 (per mil)
iso_C17 (per mil)
anteiso_C17 (per mil)
C17_1 (per mil)
C17_0 (per mil)
C18_4 (per mil)
C18_2 (per mil)
... (21 more variables)


[Consensus Reference Material Collection Data] - Consensus Reference Material Collection Data of marine dissolved organic matter collected in the Florida Strait between 2019 and 2023 (Preparation and Distribution of DOC Consensus Reference Materials)

Summary:
The laboratory of Prof. Dennis A. Hansell at the University of Miami is supported by the U.S. National Science Foundation to provide the international community of marine dissolved organic matter analysts the reference waters needed for testing their analytical results against those of a select group of expert analysts.

Three depths of the water column are sampled in the Florida Strait, typically twice each year,  to collect and distribute those waters as reference materials. The deepest water (i.e., deep seawater reference (DSR)) is collected in the Florida Straits at 700 m depth. A mid depth seawater reference (MSR), is collected at 150 m depth and surface seawater reference (SSR) is collected at 5 m. In the data table that follows, the relevant information for each collection during NSF Grant OCE-1844886, awarded to the Hansell laboratory, is provided. These details include the ship employed and its cruise designations, the dates of collection, the batch and lot numbers designated for the reference waters, the locations and depths sampled, the concentrations of dissolved organic carbon (DOC) and total dissolved nitrogen (TDN) in each lot. Finally, hyperlinks to the associated CTD and underway data, archived by RVDATA.US, are provided.

cdm_data_type = Other
VARIABLES:
Cruise_ID (unitless)
Collection_Date (unitless)
Latitude (degrees_north)
longitude (degrees_east)
Batch_ID (unitless)
Designations (unitless)
Sampling_Depths (unitless)
DOC_Conc_uM_Min (micromoles carbon per liter (uM/L))
DOC_Conc_uM_Max (micromoles carbon per liter (uM/L))
TDN_Conc_uM_Min (micromoles nitrogen per liter (uM/L))
TDN_Conc_uM_Max (micromoles nitrogen per liter (uM/L))
Ship (unitless)
Ship_Data (unitless)


[Control incubation data during calcification experiments] - Control incubation data during Mytilus californianus calcification experiments from 2020 to 2022 (OA decoupling project) (Invertebrate calcification and behavior in seawater of decoupled carbonate chemistry)

Summary:
These data support Incubation data for Mytilus californianus calcification. These incubations did not contain mussels and demonstrate that background alkalinity changes during experimental modules were minor. These data support Incubation data for Mytilus californianus calcification. These data demonstrate that background alkalinity changes during experimental modules were minor.

cdm_data_type = Other
VARIABLES:
species (units)
AphiaID (unitless)
LSID (unitless)
module (unitless)
date_local (unitless)
start_time_local (unitless)
ISO_start_DateTime_UTC (unitless)
duration (hours (h))
salinity (PSU)
temperature (degrees Celcius (c))
TA (umol kg-1)
ph (unitless)
hco3 (umol kg-1)
co3 (umol kg-1)
omega (unitless)
pco2 (uatm)
dic (umol kg-1)
do (umol kg-1)
incubation_water_mass (kilograms (kg))
delta_ta (umol kg-1)
delta_nh3 (umol kg-1)


[Controlled laboratory study using model organisms Micromonas commoda RCC 299 and Ruegeria pomeroyi DSS-3] - Bacterial transcriptional response to picoeukaryote Micromonas commoda (Effects of Climate Change Variables on Microbial Autotroph-Heterotroph Carbon Flux)

Summary:
Marine biogeochemical cycles are built on interactions between surface ocean microbes, particularly those connecting phytoplankton primary producers to heterotrophic bacteria. However, direct influences of bacteria on phytoplankton physiology are poorly known. In this study, three marine bacteria (Ruegeria pomeroyi DSS-3, Stenotrophomonas sp. SKA14, and Polaribacter dokdonensis MED152) were co-cultured with green alga Micromonas commoda, and the phytoplankter's transcriptome was studied by RNASeq. The presence of each bacterium invoked transcriptomic remodeling by M. commoda after 8 h in co-culture. Some aspects of the algal transcriptomic response were conserved across all three bacteria, while others were restricted to a single bacterium. M. commoda had both rapid and extensive responses to heterotrophic bacteria.

cdm_data_type = Other
VARIABLES:
Bottle_ID (unitless)
Treatment (unitless)
Time_h (hour (h))
Micromonas_cells_ml (cells per milliliter (cell/ml))
Bacteria_cells_ml (cells per milliliter (cell/ml))
NH4_uM (micromolar (uM))
NO3_uM (micromolar (uM))
PO4_uM (micromolar (uM))
NCBI_Sample_ID (unitless)
Accession (unitless)
BioProject (unitless)
Organism (unitless)
Taxonomy_ID (unitless)
Description (unitless)


[Coral 3D scans] - Coral stereolithography files and sampling information for Acropora palmata, A. cervicornis, and A. prolifera from St. Thomas U.S. Virgin Islands and Belize, 2015 (Collaborative research: Is hybridization among threatened Caribbean coral species the key to their survival or the harbinger of their extinction?)

Summary:
Coral specimens collected in the St. Thomas, U.S. Virgin Islands and Belize were 3-dimensionally scanned. This dataset includes metadata on the coral samples such as the collection location and conditions, and the dimensions of the samples. The STL files are available for download in the Supplemental Documentation section below.

cdm_data_type = Other
VARIABLES:
scan_filename (unitless)
Species (unitless)
Coral_ID (unitless)
Genetics_ID (unitless)
Location (unitless)
Site (unitless)
latitude (degrees_north)
longitude (degrees_east)
time (Scan Date, seconds since 1970-01-01T00:00:00Z)
Collection_Depth_ft (feet)
Current_Direction_from (unitless)
Wave_Energy (unitless)
Benthic_Type (unitless)
Length_cm (centimeters)
Width_cm (centimeters)
Height_cm (centimeters)
Volume (centimeters^3)


[Coral and macroalgae abundance and distribution] - Scleractinia, macroalgae and octocoral surveys describing species abundance and distribution, in St. John, USVI in 1987–2013 (St. John LTREB project, VI Octocorals project). (LTREB Long-term coral reef community dynamics in St. John, USVI: 1987-2019)

Summary:
\u00a0Scleractinian, octocoral, and macroalgae abundance and percent cover.

cdm_data_type = Other
VARIABLES:
site (unitless)
year (year)
AntillogorgiaCover_mean (Antillogorgia Cover Mean, percent)
AntillogorgiaCover_SE (Antillogorgia Cover SE, percent)
GorgoniaCover_mean (Gorgonia Cover Mean, percent)
GorgoniaCover_SE (Gorgonia Cover SE, percent)
PlexauraCover_mean (Plexaura Cover Mean, percent)
PlexauraCover_SE (Plexaura Cover SE, percent)
totalOctocoralCover_mean (Total Octocoral Cover Mean, percent)
totalOctocoralCover_SE (Total Octocoral Cover SE, percent)
AntillogorgiaAbundance_mean (Antillogorgia Abundance Mean, count)
AntillogorgiaAbundance_SE (Antillogorgia Abundance SE, count)
GorgoniaAbundance_mean (Gorgonia Abundance Mean, count)
GorgoniaAbundance_SE (Gorgonia Abundance SE, count)
PlexauraAbundance_mean (Plexaura Abundance Mean, count)
PlexauraAbundance_SE (Plexaura Abundance SE, count)
totalAbundance_mean (Total Abundance Mean, count)
totalAbundance_SE (Total Abundance SE, count)
ScleractinianCover_mean (Scleractinian Cover Mean, percent)
ScleractinianCover_SE (Scleractinian Cover SE, percent)
MacroalgaeCover_mean (Macroalgae Cover Mean, percent)
MacroalgaeCover_SE (Macroalgae Cover SE, percent)
CTBcover_mean (percent)
CTBcover_SE (percent)


[Coral Associated Microbes on Mo'orean Coral Reefs] - Coral associated microbes on coral, sediment and water sampled from coral reefs in Mo'orea, French Polynesia in 2017 and 2018 (Collaborative Research: Viral Reefscapes: The Role of Viruses in Coral Reef Health, Disease, and Biogeochemical Cycling)

Summary:
Three species of coral, plus water and sediment, were sampled at 21 sites around the island of Mo'orea, French Polynesia during the dry and rainy seasons in 2017 and 2018.  Coral associated microbes (bacteria and archaea) were investigated and their community composition characterized through sequencing of the 16S rRNA gene.

cdm_data_type = Other
VARIABLES:
BioSample_accession (unitless)
Sample_name (unitless)
Organism (unitless)
Collection_date (unitless)
Depth (meters (m))
Env_Local_Scale (unitless)
Geo_Loc_Name (unitless)
latitude (degrees_north)
longitude (degrees_east)
Host (unitless)
Host_Subject_ID (unitless)
Sequencing_Replicate (unitless)


[Coral calcification (G) from 1992-2019 in support of Edmunds and Perry (2023) MEPS] - Coral calcification (G) from six sites on the south coast of St. John, USVI from 1992 to 2019 (LTREB Long-term coral reef community dynamics in St. John, USVI: 1987-2019)

Summary:
These data describe coral calcification (G) from 1992-2019 at six sites on the south coast of St. John. G was calculated from ReefBudget using coral density and size by taxon and quadrat.

These data were published in Edmunds and Perry (2023).

cdm_data_type = Other
VARIABLES:
Site (unitless)
lat (degrees_north)
longitude (degrees_east)
Year (unitless)
Image (unitless)
Orbicella_spp (kilograms of calcium carbonate per meter squared per year (kg CaCO3 m-2 yr-1))
P_astreoides (kilograms of calcium carbonate per meter squared per year (kg CaCO3 m-2 yr-1))
S_siderea (kilograms of calcium carbonate per meter squared per year (kg CaCO3 m-2 yr-1))
A_agaricites (kilograms of calcium carbonate per meter squared per year (kg CaCO3 m-2 yr-1))
Millepora_spp (kilograms of calcium carbonate per meter squared per year (kg CaCO3 m-2 yr-1))
M_cavernosa (kilograms of calcium carbonate per meter squared per year (kg CaCO3 m-2 yr-1))
P_porites (kilograms of calcium carbonate per meter squared per year (kg CaCO3 m-2 yr-1))
Other (kilograms of calcium carbonate per meter squared per year (kg CaCO3 m-2 yr-1))


[Coral calcification histories] - Annual calcification histories for corals from ten Palau reef sites representing lagoon and barrier reef environments (Constraining Thermal Thresholds and Projections of Temperature Stress on Pacific Coral Reefs Over the 21st Century: Method Refinement and Application)

Summary:
Annual calcification histories for corals from ten Palau reef sites representing lagoon and barrier reef environments.

cdm_data_type = Other
VARIABLES:
site (unitless)
reef_type (unitless)
latitude (degrees_north)
longitude (degrees_east)
coral_id (unitless)
year (unitless)
density (grams per square centimeter (g/cm2))
extension (centimeters per year (cm/yr))
calcification (grams per square centimeter per year (g/cm2/yr))


[Coral calcification rates] - Coral calcification rates from experiments conducted on Oahu, Hawaii from December of 2014 to November of 2015 (Will corals recover from bleaching under ocean acidification conditions?)

Summary:
Coral calcification rates from experiments conducted on Oahu, Hawaii from December of 2014 to November of 2015

cdm_data_type = Other
VARIABLES:
Species (unitless)
Tank (unitless)
Treatment_pH (Treatment P H, unitless)
Treatment_feed (unitless)
Date_HST (unitless)
Calcification (milligrams per gram per day (mg/g/d))
Colony_number (unitless)
Nubbin_number (unitless)
Bleach_Status_2014 (unitless)
Collection_location (unitless)
latitude (degrees_north)
longitude (degrees_east)


[Coral clipping experiment - branching] - Branching data from a clipping experiment conducted on the coral Antillogorgia elisabethae at two sites in the Bahamas determined from June 1999 to June 2000 (Collaborative Research: Pattern and process in the abundance and recruitment of Caribbean octocorals)

Summary:
This dataset results from an experiment in which colonies of the coral Antillogorgia elisabethae were clipped to simulate harvesting/disturbance at 2 sites in the Bahamas, one at Great Abaco and another at San Salvador Island. This dataset includes per capita branching ratio, number of new branches, and number of new branches per mother branch for colonies that were clipped to 10 or 4 branches or not clipped. Version 2 of this dataset, created on 2023-11-07, includes a correction to the latitude of the Abaco site.

cdm_data_type = Other
VARIABLES:
Location (unitless)
Latitude (degrees_north)
longitude (degrees_east)
Treatment (unitless)
SiteTreat (unitless)
Colony (unitless)
NewBranches (unitless)
OldBranches (unitless)
PerCapitaRatio (unitless)
NumberofMotherBranches (unitless)
MotherBranch (unitless)
NewDaughterBranches (unitless)


[Coral clipping experiment - growth] - Branch extension measurements from a clipping experiment conducted on the coral Antillogorgia elisabethae at two sites in the Bahamas determined from June 1999 to June 2000 (Collaborative Research: Pattern and process in the abundance and recruitment of Caribbean octocorals)

Summary:
This dataset results from an experiment in which colonies of the coral Antillogorgia elisabethae were clipped to simulate harvesting/disturbance at 2 sites in the Bahamas, one at Great Abaco and another at San Salvador Island. This dataset includes branch extension measurements for colonies that were clipped to 10 or 4 branches or not clipped. Version 2 of this dataset, created on 2023-11-07, includes a correction to the latitude of the Abaco site.

cdm_data_type = Other
VARIABLES:
Location (unitless)
Latitude (degrees_north)
longitude (degrees_east)
Colony (unitless)
Treatment (unitless)
SiteTreat (unitless)
Branch_Number (unitless)
Growth_cm (centimeters (cm))
Jun_99 (centimeters (cm))
Jul_00 (centimeters (cm))
BranchType (unitless)


[Coral colony sequece accessions: Hidden resilience to recurrent bleaching] - RNA sequence accession numbers for coral colonies that displayed a strong bleaching phenotype at Ofu Island, American Samoa between 2015 and 2016. (Ecological, evolutionary and physiological responses of corals to a mass bleaching event in American Samoa)

Summary:
RNA sequence accession numbers for coral colonies that displayed a strong bleaching phenotype at Ofu Island, American Samoa between 2015 and 2016. This dataset includes accession numbers for 36 RNAseq libraries housed at The National Center for Biotechnology Information (NCBI).

cdm_data_type = Other
VARIABLES:
sample (unitless)
colony (unitless)
species (uniless)
date (unitless)
year (unitless)
month (unitless)
bleaching_status (percent)
Accession (unitless)
Accession_link (unitless)


[Coral colony sequence accessions: The genomics of recovery from coral bleaching] - Coral colony genetic sequence accession numbers for samples collected from the lagoon environment of Ofu Island, American Samoa between 2011 and 2015. (Ecological, evolutionary and physiological responses of corals to a mass bleaching event in American Samoa)

Summary:
Coral colony genetic sequence accessions for samples collected from the lagoon environment of Ofu Island in the National Park of American Samoa between 2011 and 2015.

cdm_data_type = Other
VARIABLES:
sample (unitless)
date (unitless)
colony (unitless)
bleaching_status (percent (%))
accession (unitless)
latitude (degrees_north)
longitude (degrees_east)
species (unitless)
accession_link (untiless)


[Coral cover from 1992-2019 in support of Edmunds and Perry (2023) MEPS] - Coral cover at six sites on the south coast of St. John, USVI from 1992 to 2019 (LTREB Long-term coral reef community dynamics in St. John, USVI: 1987-2019)

Summary:
These data describe the percentage coral cover from 1992 to 2019 at the size study sites between Cabritte Horn and White Point using photoqudrats  as statistical replicates. The data support Fig. 3C in Edmunds and Perry (2023) and provide context to the study of changes in coral colony size, density, and G over time.

cdm_data_type = Other
VARIABLES:
Site (unitless)
Year (unitless)
Quadrat (unitless)
Coral_percent_cover (percent (%))
lat (decimal degrees)
lon (decimal degrees)


[Coral cover Jarvis] - Percent coral cover from photographic surveys conducted along Jarvis Island in 2015-2017 (Skeletal Records of Coral Reef Bleaching in the Central Equatorial Pacific)

Summary:
This dataset contains percent coral cover which was collected from photographic surveys conducted along triplicate 50\u2009m transects spanning 5\u2009m to 25\u2009m depth on the east and west side of Jarvis Island (0.37\u00b0S, 159.99\u00b0W) in 2015, 2016, and 2017.

cdm_data_type = Other
VARIABLES:
transect_ID (unitless)
year (unitless)
latitude (degrees_north)
longitude (degrees_east)
depth (m)
pcnt_cover (percentage (%))
pcnt_cover_bleached (percentage (%))


[Coral disease mapping and site information] - Locations and depths of sites used in coral disease mapping from the Caribbean in 2012 (Contagious coral diseases project) (Are coral diseases contagious?)

Summary:
Locations and depths of sites used in coral disease mapping from the Caribbean in 2012 (Contagious coral diseases project)

cdm_data_type = Other
VARIABLES:
site_location (unitless)
survey_date (unitless)
site_number (unitless)
depth_max (Depth, meters)
latitude (degrees_north)
longitude (degrees_east)