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Grid DAP Data | Sub- set | Table DAP Data | Make A Graph | W M S | Source Data Files | Acces- sible | Title | Sum- mary | FGDC, ISO, Metadata | Back- ground Info | RSS | E | Institution | Dataset ID |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
data | graph | files | public | [event log LMG11-10] - Scientific sampling event log from ARSV Laurence M. Gould LMG1110 in the Southern Ocean from Nov. 2011 (Salp_Antarctic project) (Population ecology of Salpa thompsoni based on molecular indicators) | F I M | background | BCO-DMO | bcodmo_dataset_3565 |
Row Type | Variable Name | Attribute Name | Data Type | Value |
---|---|---|---|---|
attribute | NC_GLOBAL | access_formats | String | .htmlTable,.csv,.json,.mat,.nc,.tsv,.esriCsv,.geoJson |
attribute | NC_GLOBAL | acquisition_description | String | "" |
attribute | NC_GLOBAL | awards_0_award_nid | String | 54892 |
attribute | NC_GLOBAL | awards_0_award_number | String | ANT-1044982 |
attribute | NC_GLOBAL | awards_0_data_url | String | http://www.nsf.gov/awardsearch/showAward.do?AwardNumber=1044982 |
attribute | NC_GLOBAL | awards_0_funder_name | String | NSF Antarctic Sciences |
attribute | NC_GLOBAL | awards_0_funding_acronym | String | NSF ANT |
attribute | NC_GLOBAL | awards_0_funding_source_nid | String | 369 |
attribute | NC_GLOBAL | awards_0_program_manager | String | Dr Peter Milne |
attribute | NC_GLOBAL | awards_0_program_manager_nid | String | 51468 |
attribute | NC_GLOBAL | cdm_data_type | String | Other |
attribute | NC_GLOBAL | comment | String | PI: Ann Bucklin (UConn) event log from LMG11-10 Antarctic Salps, 2011 version: 2011-12-28 |
attribute | NC_GLOBAL | Conventions | String | COARDS, CF-1.6, ACDD-1.3 |
attribute | NC_GLOBAL | creator_email | String | info at bco-dmo.org |
attribute | NC_GLOBAL | creator_name | String | BCO-DMO |
attribute | NC_GLOBAL | creator_type | String | institution |
attribute | NC_GLOBAL | creator_url | String | https://www.bco-dmo.org/ |
attribute | NC_GLOBAL | data_source | String | extract_data_as_tsv version 2.3 19 Dec 2019 |
attribute | NC_GLOBAL | date_created | String | 2011-10-19T22:01:38Z |
attribute | NC_GLOBAL | date_modified | String | 2016-10-10T15:30:12Z |
attribute | NC_GLOBAL | defaultDataQuery | String | &time<now |
attribute | NC_GLOBAL | doi | String | 10.1575/1912/bco-dmo.661345 |
attribute | NC_GLOBAL | Easternmost_Easting | double | -53.55507 |
attribute | NC_GLOBAL | geospatial_lat_max | double | -53.1695 |
attribute | NC_GLOBAL | geospatial_lat_min | double | -65.08178 |
attribute | NC_GLOBAL | geospatial_lat_units | String | degrees_north |
attribute | NC_GLOBAL | geospatial_lon_max | double | -53.55507 |
attribute | NC_GLOBAL | geospatial_lon_min | double | -70.907 |
attribute | NC_GLOBAL | geospatial_lon_units | String | degrees_east |
attribute | NC_GLOBAL | geospatial_vertical_max | double | 2500.0 |
attribute | NC_GLOBAL | geospatial_vertical_min | double | 0.5 |
attribute | NC_GLOBAL | geospatial_vertical_positive | String | down |
attribute | NC_GLOBAL | geospatial_vertical_units | String | m |
attribute | NC_GLOBAL | infoUrl | String | https://www.bco-dmo.org/dataset/3565 |
attribute | NC_GLOBAL | institution | String | BCO-DMO |
attribute | NC_GLOBAL | keywords | String | bco, bco-dmo, biological, cast, chemical, comments, data, dataset, date, date_utc, day, day_local, day_utc, depth, depth2, depth_w, dmo, erddap, event, flag, inst, latitude, local, longitude, management, month, month_local, month_utc, oceanography, office, preliminary, profiler, salinity, salinity-temperature-depth, se_flag, station, station_std, std, temperature, time, time_local, time_utc |
attribute | NC_GLOBAL | license | String | https://www.bco-dmo.org/dataset/3565/license |
attribute | NC_GLOBAL | metadata_source | String | https://www.bco-dmo.org/api/dataset/3565 |
attribute | NC_GLOBAL | Northernmost_Northing | double | -53.1695 |
attribute | NC_GLOBAL | param_mapping | String | {'3565': {'lat': 'flag - latitude', 'depth': 'flag - depth', 'lon': 'flag - longitude'}} |
attribute | NC_GLOBAL | parameter_source | String | https://www.bco-dmo.org/mapserver/dataset/3565/parameters |
attribute | NC_GLOBAL | people_0_affiliation | String | University of Connecticut |
attribute | NC_GLOBAL | people_0_affiliation_acronym | String | UConn - Avery Point |
attribute | NC_GLOBAL | people_0_person_name | String | Ann Bucklin |
attribute | NC_GLOBAL | people_0_person_nid | String | 50389 |
attribute | NC_GLOBAL | people_0_role | String | Chief Scientist |
attribute | NC_GLOBAL | people_0_role_type | String | originator |
attribute | NC_GLOBAL | people_1_affiliation | String | Woods Hole Oceanographic Institution |
attribute | NC_GLOBAL | people_1_affiliation_acronym | String | WHOI BCO-DMO |
attribute | NC_GLOBAL | people_1_person_name | String | Nancy Copley |
attribute | NC_GLOBAL | people_1_person_nid | String | 50396 |
attribute | NC_GLOBAL | people_1_role | String | BCO-DMO Data Manager |
attribute | NC_GLOBAL | people_1_role_type | String | related |
attribute | NC_GLOBAL | project | String | Salp_Antarctic |
attribute | NC_GLOBAL | projects_0_acronym | String | Salp_Antarctic |
attribute | NC_GLOBAL | projects_0_description | String | The Antarctic salp, Salpa thompsoni, is an increasingly important player in the vulnerable Antarctic Peninsula pelagic ecosystem. Observations of high abundance of Salpa thompsoni during the summer in the Southern Ocean suggest that this species is capable of rapid somatic and population growth, and frequently forms dense blooms under favorable environmental conditions. The proposed research will examine genome-wide patterns of gene expression, target gene expression levels, and patterns of population genetic diversity and structure of the target salp species. Our preliminary results and data analysis have provided a promising basis for transcriptomic studies of S. thompsoni in the Southern Ocean. The proposed next steps in our genomic/transcriptomic analysis of Salpa thompsoni are: 1) completion of a reference transcriptome as a basis for genome-wide analysis of gene expression; 2) whole transcriptome shotgun sequencing (RNA-Seq) analysis to characterize gene expression in relation to individual characteristics and environmental conditions; 3) quantitative real-time PCR (qRT-PCR) characterization and validation of gene expression for 10-20 top differentially-expressed genes; and 4) detection of strand-specific allelic variation at SNP (Single Nucleotide Polymorphic) sites to analyze clonal diversity and population genetic diversity and structure. We hypothesize that: 1) deep analysis of the Salpa thompsoni transcriptome will reveal significant associations among selected set of differentially-expressed genes and critical life history stages and events (e.g., ontogenetic maturation, sexual reproduction, senescence) of the salp; and 2) the species will show variable levels of clonal diversity and significant genetic differentiation among salp populations in different regions of the Southern Ocean. Samples will be obtained from research cruises during 2011-2013 in diverse regions of the Southern Ocean; dedicated sample and data collection will be carried out during a cruise of the R/V LM GOULD (LMG11-10) to the Western Antarctic Peninsula region in November, 2011. The significance of this effort lies in new understanding of the molecular processes underlying the complex life history and population dynamics of S. thompsoni in relation to the Antarctic pelagic ecosystem and extreme and variable environmental conditions of the Southern Ocean. Most of the data from this project are available from the Marine Geoscience Data System (MGDS), part of IEDA and is available at https://www.marine-geo.org/tools/search/Files.php?data_set_uid=18148. |
attribute | NC_GLOBAL | projects_0_end_date | String | 2014-05 |
attribute | NC_GLOBAL | projects_0_geolocation | String | Southern Ocean |
attribute | NC_GLOBAL | projects_0_name | String | Population ecology of Salpa thompsoni based on molecular indicators |
attribute | NC_GLOBAL | projects_0_project_nid | String | 2174 |
attribute | NC_GLOBAL | projects_0_start_date | String | 2011-06 |
attribute | NC_GLOBAL | publisher_name | String | Biological and Chemical Oceanographic Data Management Office (BCO-DMO) |
attribute | NC_GLOBAL | publisher_type | String | institution |
attribute | NC_GLOBAL | sourceUrl | String | (local files) |
attribute | NC_GLOBAL | Southernmost_Northing | double | -65.08178 |
attribute | NC_GLOBAL | standard_name_vocabulary | String | CF Standard Name Table v55 |
attribute | NC_GLOBAL | summary | String | A digital event log to record all instrument deployments during the cruise. |
attribute | NC_GLOBAL | title | String | [event log LMG11-10] - Scientific sampling event log from ARSV Laurence M. Gould LMG1110 in the Southern Ocean from Nov. 2011 (Salp_Antarctic project) (Population ecology of Salpa thompsoni based on molecular indicators) |
attribute | NC_GLOBAL | version | String | 1 |
attribute | NC_GLOBAL | Westernmost_Easting | double | -70.907 |
attribute | NC_GLOBAL | xml_source | String | osprey2erddap.update_xml() v1.3 |
variable | event | String | ||
attribute | event | bcodmo_name | String | event |
attribute | event | description | String | unique sampling event number derived from local YYYYMMDD.HHMM |
attribute | event | long_name | String | Event |
attribute | event | nerc_identifier | String | https://vocab.nerc.ac.uk/collection/P01/current/EVTAGFL/ |
attribute | event | units | String | dimensionless |
variable | inst | String | ||
attribute | inst | bcodmo_name | String | instrument |
attribute | inst | description | String | name of sampling device |
attribute | inst | long_name | String | Inst |
attribute | inst | units | String | dimensionless |
variable | cast | String | ||
attribute | cast | bcodmo_name | String | cast |
attribute | cast | description | String | cast number |
attribute | cast | long_name | String | Cast |
attribute | cast | units | String | dimensionless |
variable | station | String | ||
attribute | station | bcodmo_name | String | station |
attribute | station | description | String | station number |
attribute | station | long_name | String | Station |
attribute | station | units | String | dimensionless |
variable | station_std | byte | ||
attribute | station_std | _FillValue | byte | 127 |
attribute | station_std | actual_range | byte | 3, 29 |
attribute | station_std | bcodmo_name | String | station_std |
attribute | station_std | description | String | standard station number |
attribute | station_std | long_name | String | Station Std |
variable | se_flag | String | ||
attribute | se_flag | bcodmo_name | String | se_flag |
attribute | se_flag | description | String | s=start of activity; e=end of activity; s/e=point activity |
attribute | se_flag | long_name | String | Se Flag |
attribute | se_flag | units | String | dimensionless |
variable | month_local | byte | ||
attribute | month_local | _FillValue | byte | 127 |
attribute | month_local | actual_range | byte | 11, 12 |
attribute | month_local | bcodmo_name | String | month_local |
attribute | month_local | description | String | month, local time |
attribute | month_local | long_name | String | Month Local |
attribute | month_local | units | String | 1-12 |
variable | day_local | byte | ||
attribute | day_local | _FillValue | byte | 127 |
attribute | day_local | actual_range | byte | 1, 29 |
attribute | day_local | bcodmo_name | String | day_local |
attribute | day_local | description | String | day of month, local time |
attribute | day_local | long_name | String | Day Local |
variable | time_local | String | ||
attribute | time_local | bcodmo_name | String | time_local |
attribute | time_local | description | String | local time (close to EDT) as 2400 clock HHMM format |
attribute | time_local | long_name | String | Time Local |
attribute | time_local | units | String | dimensionless |
variable | date_utc | int | ||
attribute | date_utc | _FillValue | int | 2147483647 |
attribute | date_utc | actual_range | int | 20111102, 20111201 |
attribute | date_utc | bcodmo_name | String | date_utc |
attribute | date_utc | description | String | date, UTC in yyyyMMdd format |
attribute | date_utc | long_name | String | Date Utc |
attribute | date_utc | units | String | unitless |
variable | month_utc | byte | ||
attribute | month_utc | _FillValue | byte | 127 |
attribute | month_utc | actual_range | byte | 11, 12 |
attribute | month_utc | bcodmo_name | String | month_utc |
attribute | month_utc | description | String | month of year, UTC time |
attribute | month_utc | long_name | String | Month Utc |
attribute | month_utc | units | String | 1-12 |
variable | day_utc | byte | ||
attribute | day_utc | _FillValue | byte | 127 |
attribute | day_utc | actual_range | byte | 1, 28 |
attribute | day_utc | bcodmo_name | String | day_gmt |
attribute | day_utc | description | String | day of month, utc time |
attribute | day_utc | long_name | String | Day Utc |
attribute | day_utc | units | String | 1-31 |
variable | time_utc | String | ||
attribute | time_utc | bcodmo_name | String | time_utc |
attribute | time_utc | description | String | time (UTC) using 24 hour clock HHMMSS format |
attribute | time_utc | long_name | String | Time Utc |
attribute | time_utc | units | String | dimensionless |
variable | latitude | double | ||
attribute | latitude | _CoordinateAxisType | String | Lat |
attribute | latitude | _FillValue | double | NaN |
attribute | latitude | actual_range | double | -65.08178, -53.1695 |
attribute | latitude | axis | String | Y |
attribute | latitude | bcodmo_name | String | latitude |
attribute | latitude | colorBarMaximum | double | 90.0 |
attribute | latitude | colorBarMinimum | double | -90.0 |
attribute | latitude | description | String | latitude (North is positive; South is negative) |
attribute | latitude | ioos_category | String | Location |
attribute | latitude | long_name | String | Latitude |
attribute | latitude | nerc_identifier | String | https://vocab.nerc.ac.uk/collection/P09/current/LATX/ |
attribute | latitude | standard_name | String | latitude |
attribute | latitude | units | String | degrees_north |
variable | longitude | double | ||
attribute | longitude | _CoordinateAxisType | String | Lon |
attribute | longitude | _FillValue | double | NaN |
attribute | longitude | actual_range | double | -70.907, -53.55507 |
attribute | longitude | axis | String | X |
attribute | longitude | bcodmo_name | String | longitude |
attribute | longitude | colorBarMaximum | double | 180.0 |
attribute | longitude | colorBarMinimum | double | -180.0 |
attribute | longitude | description | String | longitude (East is positive; West is negative) |
attribute | longitude | ioos_category | String | Location |
attribute | longitude | long_name | String | Longitude |
attribute | longitude | nerc_identifier | String | https://vocab.nerc.ac.uk/collection/P09/current/LONX/ |
attribute | longitude | standard_name | String | longitude |
attribute | longitude | units | String | degrees_east |
variable | depth_w | String | ||
attribute | depth_w | bcodmo_name | String | depth_bottom |
attribute | depth_w | description | String | depth of water; seafloor depth from the shipboard 12 kHz Knudsen echosounder |
attribute | depth_w | long_name | String | Depth |
attribute | depth_w | standard_name | String | depth |
attribute | depth_w | units | String | meters |
variable | depth | double | ||
attribute | depth | _CoordinateAxisType | String | Height |
attribute | depth | _CoordinateZisPositive | String | down |
attribute | depth | _FillValue | double | NaN |
attribute | depth | actual_range | double | 0.5, 2500.0 |
attribute | depth | axis | String | Z |
attribute | depth | bcodmo_name | String | depth |
attribute | depth | description | String | depth of cast or tow |
attribute | depth | ioos_category | String | Location |
attribute | depth | long_name | String | Depth |
attribute | depth | nerc_identifier | String | https://vocab.nerc.ac.uk/collection/P09/current/DEPH/ |
attribute | depth | positive | String | down |
attribute | depth | standard_name | String | depth |
attribute | depth | units | String | m |
variable | si | String | ||
attribute | si | bcodmo_name | String | investigator |
attribute | si | description | String | name of investigator responsible for the data from a sampling device |
attribute | si | long_name | String | Si |
attribute | si | units | String | dimensionless |
variable | comments | String | ||
attribute | comments | bcodmo_name | String | comment |
attribute | comments | description | String | free text comment |
attribute | comments | long_name | String | Comments |
attribute | comments | units | String | dimensionless |
The information in the table above is also available in other file formats (.csv, .htmlTable, .itx, .json, .jsonlCSV1, .jsonlCSV, .jsonlKVP, .mat, .nc, .nccsv, .tsv, .xhtml) via a RESTful web service.