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     data   graph     files  public Scientific sampling event log from ARSV Laurence M. Gould LMG1110 in the Southern Ocean from
Nov. 2011 (Salp_Antarctic project) 		   ?     I   M   background (external link) RSS Subscribe BCO-DMO bcodmo_dataset_3565

The Dataset's Variables and Attributes

Row Type Variable Name Attribute Name Data Type Value
attribute NC_GLOBAL access_formats String .htmlTable,.csv,.json,.mat,.nc,.tsv,.esriCsv,.geoJson
attribute NC_GLOBAL acquisition_description String ""
attribute NC_GLOBAL awards_0_award_nid String 54892
attribute NC_GLOBAL awards_0_award_number String ANT-1044982
attribute NC_GLOBAL awards_0_data_url String http://www.nsf.gov/awardsearch/showAward.do?AwardNumber=1044982 (external link)
attribute NC_GLOBAL awards_0_funder_name String NSF Antarctic Sciences
attribute NC_GLOBAL awards_0_funding_acronym String NSF ANT
attribute NC_GLOBAL awards_0_funding_source_nid String 369
attribute NC_GLOBAL awards_0_program_manager String Dr Peter Milne
attribute NC_GLOBAL awards_0_program_manager_nid String 51468
attribute NC_GLOBAL cdm_data_type String Other
attribute NC_GLOBAL comment String PI: Ann Bucklin (UConn)
event log from LMG11-10
Antarctic Salps, 2011
version: 2011-12-28
attribute NC_GLOBAL Conventions String COARDS, CF-1.6, ACDD-1.3
attribute NC_GLOBAL creator_email String info at bco-dmo.org
attribute NC_GLOBAL creator_name String BCO-DMO
attribute NC_GLOBAL creator_type String institution
attribute NC_GLOBAL creator_url String https://www.bco-dmo.org/ (external link)
attribute NC_GLOBAL data_source String extract_data_as_tsv version 2.3 19 Dec 2019
attribute NC_GLOBAL date_created String 2011-10-19T22:01:38Z
attribute NC_GLOBAL date_modified String 2016-10-10T15:30:12Z
attribute NC_GLOBAL defaultDataQuery String &time<now
attribute NC_GLOBAL doi String 10.1575/1912/bco-dmo.661345
attribute NC_GLOBAL Easternmost_Easting double -53.55507
attribute NC_GLOBAL geospatial_lat_max double -53.1695
attribute NC_GLOBAL geospatial_lat_min double -65.08178
attribute NC_GLOBAL geospatial_lat_units String degrees_north
attribute NC_GLOBAL geospatial_lon_max double -53.55507
attribute NC_GLOBAL geospatial_lon_min double -70.907
attribute NC_GLOBAL geospatial_lon_units String degrees_east
attribute NC_GLOBAL geospatial_vertical_max double 2500.0
attribute NC_GLOBAL geospatial_vertical_min double 0.5
attribute NC_GLOBAL geospatial_vertical_positive String down
attribute NC_GLOBAL geospatial_vertical_units String m
attribute NC_GLOBAL infoUrl String https://www.bco-dmo.org/dataset/3565 (external link)
attribute NC_GLOBAL institution String BCO-DMO
attribute NC_GLOBAL keywords String bco, bco-dmo, biological, cast, chemical, comments, data, dataset, date, date_utc, day, day_local, day_utc, depth, depth2, depth_w, dmo, erddap, event, flag, inst, latitude, local, longitude, management, month, month_local, month_utc, oceanography, office, preliminary, profiler, salinity, salinity-temperature-depth, se_flag, station, station_std, std, temperature, time, time_local, time_utc
attribute NC_GLOBAL license String https://www.bco-dmo.org/dataset/3565/license (external link)
attribute NC_GLOBAL metadata_source String https://www.bco-dmo.org/api/dataset/3565 (external link)
attribute NC_GLOBAL Northernmost_Northing double -53.1695
attribute NC_GLOBAL param_mapping String {'3565': {'lat': 'flag - latitude', 'depth': 'flag - depth', 'lon': 'flag - longitude'}}
attribute NC_GLOBAL parameter_source String https://www.bco-dmo.org/mapserver/dataset/3565/parameters (external link)
attribute NC_GLOBAL people_0_affiliation String University of Connecticut
attribute NC_GLOBAL people_0_affiliation_acronym String UConn - Avery Point
attribute NC_GLOBAL people_0_person_name String Ann Bucklin
attribute NC_GLOBAL people_0_person_nid String 50389
attribute NC_GLOBAL people_0_role String Chief Scientist
attribute NC_GLOBAL people_0_role_type String originator
attribute NC_GLOBAL people_1_affiliation String Woods Hole Oceanographic Institution
attribute NC_GLOBAL people_1_affiliation_acronym String WHOI BCO-DMO
attribute NC_GLOBAL people_1_person_name String Nancy Copley
attribute NC_GLOBAL people_1_person_nid String 50396
attribute NC_GLOBAL people_1_role String BCO-DMO Data Manager
attribute NC_GLOBAL people_1_role_type String related
attribute NC_GLOBAL project String Salp_Antarctic
attribute NC_GLOBAL projects_0_acronym String Salp_Antarctic
attribute NC_GLOBAL projects_0_description String The Antarctic salp, Salpa thompsoni, is an increasingly important player in the vulnerable Antarctic Peninsula pelagic ecosystem. Observations of high abundance of Salpa thompsoni during the summer in the Southern Ocean suggest that this species is capable of rapid somatic and population growth, and frequently forms dense blooms under favorable environmental conditions. The proposed research will examine genome-wide patterns of gene expression, target gene expression levels, and patterns of population genetic diversity and structure of the target salp species. Our preliminary results and data analysis have provided a promising basis for transcriptomic studies of S. thompsoni in the Southern Ocean. The proposed next steps in our genomic/transcriptomic analysis of Salpa thompsoni are: 1) completion of a reference transcriptome as a basis for genome-wide analysis of gene expression; 2) whole transcriptome shotgun sequencing (RNA-Seq) analysis to characterize gene expression in relation to individual characteristics and environmental conditions; 3) quantitative real-time PCR (qRT-PCR) characterization and validation of gene expression for 10-20 top differentially-expressed genes; and 4) detection of strand-specific allelic variation at SNP (Single Nucleotide Polymorphic) sites to analyze clonal diversity and population genetic diversity and structure. We hypothesize that: 1) deep analysis of the Salpa thompsoni transcriptome will reveal significant associations among selected set of differentially-expressed genes and critical life history stages and events (e.g., ontogenetic maturation, sexual reproduction, senescence) of the salp; and 2) the species will show variable levels of clonal diversity and significant genetic differentiation among salp populations in different regions of the Southern Ocean. Samples will be obtained from research cruises during 2011-2013 in diverse regions of the Southern Ocean; dedicated sample and data collection will be carried out during a cruise of the R/V LM GOULD (LMG11-10) to the Western Antarctic Peninsula region in November, 2011. The significance of this effort lies in new understanding of the molecular processes underlying the complex life history and population dynamics of S. thompsoni in relation to the Antarctic pelagic ecosystem and extreme and variable environmental conditions of the Southern Ocean.
Most of the data from this project are available from the Marine Geoscience Data System (MGDS), part of IEDA and is available at http://www.marine-geo.org/tools/search/Files.php?data_set_uid=18148.
attribute NC_GLOBAL projects_0_end_date String 2014-05
attribute NC_GLOBAL projects_0_geolocation String Southern Ocean
attribute NC_GLOBAL projects_0_name String Population ecology of Salpa thompsoni based on molecular indicators
attribute NC_GLOBAL projects_0_project_nid String 2174
attribute NC_GLOBAL projects_0_start_date String 2011-06
attribute NC_GLOBAL publisher_name String Biological and Chemical Oceanographic Data Management Office (BCO-DMO)
attribute NC_GLOBAL publisher_type String institution
attribute NC_GLOBAL sourceUrl String (local files)
attribute NC_GLOBAL Southernmost_Northing double -65.08178
attribute NC_GLOBAL standard_name_vocabulary String CF Standard Name Table v55
attribute NC_GLOBAL summary String A digital event log to record all instrument deployments during the cruise.
attribute NC_GLOBAL title String Scientific sampling event log from ARSV Laurence M. Gould LMG1110 in the Southern Ocean from Nov. 2011 (Salp_Antarctic project)
attribute NC_GLOBAL version String 1
attribute NC_GLOBAL Westernmost_Easting double -70.907
attribute NC_GLOBAL xml_source String osprey2erddap.update_xml() v1.3
variable event   String  
attribute event bcodmo_name String event
attribute event description String unique sampling event number derived from local YYYYMMDD.HHMM
attribute event long_name String Event
attribute event nerc_identifier String https://vocab.nerc.ac.uk/collection/P01/current/EVTAGFL/ (external link)
attribute event units String dimensionless
variable inst   String  
attribute inst bcodmo_name String instrument
attribute inst description String name of sampling device
attribute inst long_name String Inst
attribute inst units String dimensionless
variable cast   String  
attribute cast bcodmo_name String cast
attribute cast description String cast number
attribute cast long_name String Cast
attribute cast units String dimensionless
variable station   String  
attribute station bcodmo_name String station
attribute station description String station number
attribute station long_name String Station
attribute station units String dimensionless
variable station_std   byte  
attribute station_std _FillValue byte 127
attribute station_std actual_range byte 3, 29
attribute station_std bcodmo_name String station_std
attribute station_std description String standard station number
attribute station_std long_name String Station Std
variable se_flag   String  
attribute se_flag bcodmo_name String se_flag
attribute se_flag description String s=start of activity; e=end of activity; s/e=point activity
attribute se_flag long_name String Se Flag
attribute se_flag units String dimensionless
variable month_local   byte  
attribute month_local _FillValue byte 127
attribute month_local actual_range byte 11, 12
attribute month_local bcodmo_name String month_local
attribute month_local description String month, local time
attribute month_local long_name String Month Local
attribute month_local units String 1-12
variable day_local   byte  
attribute day_local _FillValue byte 127
attribute day_local actual_range byte 1, 29
attribute day_local bcodmo_name String day_local
attribute day_local description String day of month, local time
attribute day_local long_name String Day Local
variable time_local   String  
attribute time_local bcodmo_name String time_local
attribute time_local description String local time (close to EDT) as 2400 clock HHMM format
attribute time_local long_name String Time Local
attribute time_local units String dimensionless
variable date_utc   int  
attribute date_utc _FillValue int 2147483647
attribute date_utc actual_range int 20111102, 20111201
attribute date_utc bcodmo_name String date_utc
attribute date_utc description String date, UTC in yyyyMMdd format
attribute date_utc long_name String Date Utc
attribute date_utc units String unitless
variable month_utc   byte  
attribute month_utc _FillValue byte 127
attribute month_utc actual_range byte 11, 12
attribute month_utc bcodmo_name String month_utc
attribute month_utc description String month of year, UTC time
attribute month_utc long_name String Month Utc
attribute month_utc units String 1-12
variable day_utc   byte  
attribute day_utc _FillValue byte 127
attribute day_utc actual_range byte 1, 28
attribute day_utc bcodmo_name String day_gmt
attribute day_utc description String day of month, utc time
attribute day_utc long_name String Day Utc
attribute day_utc units String 1-31
variable time_utc   String  
attribute time_utc bcodmo_name String time_utc
attribute time_utc description String time (UTC) using 24 hour clock HHMMSS format
attribute time_utc long_name String Time Utc
attribute time_utc units String dimensionless
variable latitude   double  
attribute latitude _CoordinateAxisType String Lat
attribute latitude _FillValue double NaN
attribute latitude actual_range double -65.08178, -53.1695
attribute latitude axis String Y
attribute latitude bcodmo_name String latitude
attribute latitude colorBarMaximum double 90.0
attribute latitude colorBarMinimum double -90.0
attribute latitude description String latitude (North is positive; South is negative)
attribute latitude ioos_category String Location
attribute latitude long_name String Latitude
attribute latitude nerc_identifier String https://vocab.nerc.ac.uk/collection/P09/current/LATX/ (external link)
attribute latitude standard_name String latitude
attribute latitude units String degrees_north
variable longitude   double  
attribute longitude _CoordinateAxisType String Lon
attribute longitude _FillValue double NaN
attribute longitude actual_range double -70.907, -53.55507
attribute longitude axis String X
attribute longitude bcodmo_name String longitude
attribute longitude colorBarMaximum double 180.0
attribute longitude colorBarMinimum double -180.0
attribute longitude description String longitude (East is positive; West is negative)
attribute longitude ioos_category String Location
attribute longitude long_name String Longitude
attribute longitude nerc_identifier String https://vocab.nerc.ac.uk/collection/P09/current/LONX/ (external link)
attribute longitude standard_name String longitude
attribute longitude units String degrees_east
variable depth_w   String  
attribute depth_w bcodmo_name String depth_bottom
attribute depth_w description String depth of water; seafloor depth from the shipboard 12 kHz Knudsen echosounder
attribute depth_w long_name String Depth
attribute depth_w standard_name String depth
attribute depth_w units String meters
variable depth   double  
attribute depth _CoordinateAxisType String Height
attribute depth _CoordinateZisPositive String down
attribute depth _FillValue double NaN
attribute depth actual_range double 0.5, 2500.0
attribute depth axis String Z
attribute depth bcodmo_name String depth
attribute depth description String depth of cast or tow
attribute depth ioos_category String Location
attribute depth long_name String Depth
attribute depth nerc_identifier String https://vocab.nerc.ac.uk/collection/P09/current/DEPH/ (external link)
attribute depth positive String down
attribute depth standard_name String depth
attribute depth units String m
variable si   String  
attribute si bcodmo_name String investigator
attribute si description String name of investigator responsible for the data from a sampling device
attribute si long_name String Si
attribute si units String dimensionless
variable comments   String  
attribute comments bcodmo_name String comment
attribute comments description String free text comment
attribute comments long_name String Comments
attribute comments units String dimensionless

The information in the table above is also available in other file formats (.csv, .htmlTable, .itx, .json, .jsonlCSV1, .jsonlCSV, .jsonlKVP, .mat, .nc, .nccsv, .tsv, .xhtml) via a RESTful web service.


 
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