ERDDAP > info > bcodmo_dataset_3720

Grid DAP Data	Sub- set	Table DAP Data	Make A Graph	W M S	Source Data Files	Acces- sible	Title	Sum- mary	FGDC, ISO, Metadata	Back- ground Info	RSS	E mail	Institution	Dataset ID
	set	data	graph		files	public	[sea_fan_survey] - Annual health surveys of the sea fan Gorgonia ventalina in La Parguera, Puerto Rico from 2006-2010 (Influence of Temperature and Acidification on the Dynamics of Coral Co-Infection and Resistance)		F   I   M	background			BCO-DMO	bcodmo_dataset_3720

The Dataset's Variables and Attributes

Row Type	Variable Name	Attribute Name	Data Type	Value
attribute	NC_GLOBAL	access_formats	String	.htmlTable,.csv,.json,.mat,.nc,.tsv,.esriCsv,.geoJson
attribute	NC_GLOBAL	acquisition_description	String	Sampling and Analytical Methodology: Sixteen 20 square-meter band transects were randomly laid (4 transects per depth) at two reefs in La Parguera, PR, Media Luna (3 to 18 m depths) and Buoy (18 to 25 m depths). Surveys occurred annually in September or October from 2006 to 2010 at Media Luna and 2007 to 2010 at Buoy. Along each transect all apparently healthy G. ventalina colonies and colonies with lesions were enumerated. Any purple or abnormally colored area on the sea fans was checked carefully. Lesions were also recorded and described as follows: large irregular purple spots (aspergillosis-like; full description Work and Aeby 2006), MFPS, predation, bleaching, and other abnormalities. Other abnormalities included growth anomalies, cyanobacteria, red band disease etc. Signs of predation by snails (flamingo tongue) and by fireworms were noted,. Prevalence (the total number of each abnormality divided by the total number of individuals) of each type of abnormality was calculated per transect, depth, and year.
attribute	NC_GLOBAL	awards_0_award_nid	String	55012
attribute	NC_GLOBAL	awards_0_award_number	String	OCE-0849776
attribute	NC_GLOBAL	awards_0_data_url	String	http://www.nsf.gov/awardsearch/showAward.do?AwardNumber=0849776
attribute	NC_GLOBAL	awards_0_funder_name	String	NSF Division of Ocean Sciences
attribute	NC_GLOBAL	awards_0_funding_acronym	String	NSF OCE
attribute	NC_GLOBAL	awards_0_funding_source_nid	String	355
attribute	NC_GLOBAL	awards_0_program_manager	String	David L. Garrison
attribute	NC_GLOBAL	awards_0_program_manager_nid	String	50534
attribute	NC_GLOBAL	cdm_data_type	String	Other
attribute	NC_GLOBAL	comment	String	Annual health surveys of Gorgonia ventalina in La Parguera, PR PI: Drew Harvell (Cornell University) Co-PI: Laura Mydlarz (University of Texas Arlington) Version: 14 Sept 2012
attribute	NC_GLOBAL	Conventions	String	COARDS, CF-1.6, ACDD-1.3
attribute	NC_GLOBAL	creator_email	String	info at bco-dmo.org
attribute	NC_GLOBAL	creator_name	String	BCO-DMO
attribute	NC_GLOBAL	creator_type	String	institution
attribute	NC_GLOBAL	creator_url	String	https://www.bco-dmo.org/
attribute	NC_GLOBAL	data_source	String	extract_data_as_tsv version 2.3 19 Dec 2019
attribute	NC_GLOBAL	date_created	String	2012-09-14T14:59:42Z
attribute	NC_GLOBAL	date_modified	String	2019-03-01T21:37:19Z
attribute	NC_GLOBAL	defaultDataQuery	String	&time<now
attribute	NC_GLOBAL	doi	String	10.1575/1912/bco-dmo.3720.1
attribute	NC_GLOBAL	Easternmost_Easting	double	-66.9848
attribute	NC_GLOBAL	geospatial_lat_max	double	17.9349
attribute	NC_GLOBAL	geospatial_lat_min	double	17.8897
attribute	NC_GLOBAL	geospatial_lat_units	String	degrees_north
attribute	NC_GLOBAL	geospatial_lon_max	double	-66.9848
attribute	NC_GLOBAL	geospatial_lon_min	double	-67.0489
attribute	NC_GLOBAL	geospatial_lon_units	String	degrees_east
attribute	NC_GLOBAL	geospatial_vertical_max	double	25.0
attribute	NC_GLOBAL	geospatial_vertical_min	double	3.0
attribute	NC_GLOBAL	geospatial_vertical_positive	String	down
attribute	NC_GLOBAL	geospatial_vertical_units	String	m
attribute	NC_GLOBAL	infoUrl	String	https://www.bco-dmo.org/dataset/3720
attribute	NC_GLOBAL	institution	String	BCO-DMO
attribute	NC_GLOBAL	keywords	String	average, bco, bco-dmo, biological, bleached, bleached_avg, bleached_avg_sd, chemical, data, dataset, depth, dmo, erddap, healthy, healthy_avg, healthy_avg_sd, latitude, lg_purple_spts, lg_purple_spts_avg, lg_purple_spts_avg_sd, log10, longitude, management, mfps, MFPS_avg, MFPS_avg_sd, MFPS_log10, month, oceanography, office, other_avg, other_avg_sd, predation, predation_avg, predation_avg_sd, preliminary, purple, site, spts, year
attribute	NC_GLOBAL	license	String	https://www.bco-dmo.org/dataset/3720/license
attribute	NC_GLOBAL	metadata_source	String	https://www.bco-dmo.org/api/dataset/3720
attribute	NC_GLOBAL	Northernmost_Northing	double	17.9349
attribute	NC_GLOBAL	param_mapping	String	{'3720': {'lat': 'master - latitude', 'depth': 'flag - depth', 'lon': 'master - longitude'}}
attribute	NC_GLOBAL	parameter_source	String	https://www.bco-dmo.org/mapserver/dataset/3720/parameters
attribute	NC_GLOBAL	people_0_affiliation	String	Cornell University
attribute	NC_GLOBAL	people_0_affiliation_acronym	String	Cornell
attribute	NC_GLOBAL	people_0_person_name	String	Drew Harvell
attribute	NC_GLOBAL	people_0_person_nid	String	51556
attribute	NC_GLOBAL	people_0_role	String	Principal Investigator
attribute	NC_GLOBAL	people_0_role_type	String	originator
attribute	NC_GLOBAL	people_1_affiliation	String	University of Texas at Arlington
attribute	NC_GLOBAL	people_1_affiliation_acronym	String	UT Arlington
attribute	NC_GLOBAL	people_1_person_name	String	Dr Laura Mydlarz
attribute	NC_GLOBAL	people_1_person_nid	String	51558
attribute	NC_GLOBAL	people_1_role	String	Co-Principal Investigator
attribute	NC_GLOBAL	people_1_role_type	String	originator
attribute	NC_GLOBAL	people_2_affiliation	String	Cornell University
attribute	NC_GLOBAL	people_2_affiliation_acronym	String	Cornell
attribute	NC_GLOBAL	people_2_person_name	String	Dr Colleen Burge
attribute	NC_GLOBAL	people_2_person_nid	String	51557
attribute	NC_GLOBAL	people_2_role	String	Contact
attribute	NC_GLOBAL	people_2_role_type	String	related
attribute	NC_GLOBAL	people_3_affiliation	String	Woods Hole Oceanographic Institution
attribute	NC_GLOBAL	people_3_affiliation_acronym	String	WHOI BCO-DMO
attribute	NC_GLOBAL	people_3_person_name	String	Shannon Rauch
attribute	NC_GLOBAL	people_3_person_nid	String	51498
attribute	NC_GLOBAL	people_3_role	String	BCO-DMO Data Manager
attribute	NC_GLOBAL	people_3_role_type	String	related
attribute	NC_GLOBAL	project	String	Climate_CoralDisease
attribute	NC_GLOBAL	projects_0_acronym	String	Climate_CoralDisease
attribute	NC_GLOBAL	projects_0_description	String	This award is funded under the American Recovery and Reinvestment Act of 2009 (Public Law 111-5). Coral reef ecosystems are highly endangered by recent increases in temperature and by projected increases in ocean acidification. Although temperature has been identified as a driver of some coral disease outbreaks, nothing is known about direct effects of acidification on host immunity and pathogen virulence, or the potential for synergism with temperature. Natural coral populations often suffer from simultaneous infection by multiple pathogens that can also influence host immune responses, but co-infection dynamics have not been investigated in invertebrate systems lacking classical adaptive immunity. Changing climate will very likely influence the outcome of single and co-infection. This project will investigate the influence of environmental stress on co-infection dynamics of the sea fan coral, Gorgonia ventalina, with a fungal pathogen, Aspergillus sydowii and a protist parasite, SPX. The goal is to identify the mechanisms through which multiple infections, temperature and acidification modify host resistance, leading to changes in within- and among-colony rates of disease spread. The objectives of this project are to: (1) Identify incidence and co-infection frequency of Aspergillus sydowii and SPX. Detailed field surveys of the two diseases will test the hypothesis that co-infection is significant, provide valuable information about drivers of aspergillosis, and will help to characterize an emerging new sea fan disease. (2) Investigate how co-infection influences sea fan susceptibility, resistance, and within host disease dynamics. Through manipulative lab inoculation experiments we will test the hypothesis that single infections increase susceptibility to a second pathogen. (3) Examine the effects of temperature increase and ocean acidification on pathogen virulence, on underlying host resistance, and on the dynamics of single and co-infections. The hypotheses that acidification will increase pathogen virulence and host susceptibility will be tested in a temperature and pH controlled experimental system. This system will also allow the potential synergistic effects of temperature and acidification on host immunity and co-infection dynamics to be explored. The primary intellectual merit of the proposed work will be a greater understanding of how changing climate mediates co-infection and immunity in a non-model invertebrate. While fungal pathogens are primarily opportunistic, labyrinthulid protozoans are recognized as primary pathogens in shellfish. Even in shellfish, little is known about co-infections involving labyrinthulids, and these protists are entirely unstudied in corals. Publications associated with this project: Burge CA, Douglas N, Conti-Jerpe I, Weil E, Roberts S, Friedman CS & CD Harvell. (May 2012) Friend or foe: the association of Labyrinthulomycetes with the Caribbean sea fan, Gorgonia ventalina. Dis Aquat Org. 101:1-12. doi: 10.3354/dao02487 Burge CA, Mouchka, ME, Harvell, CD & S Roberts. (In review) Immune response of the Caribbean sea fan, Gorgonia ventalina exposed to an Aplanochytrium parasite as revealed by transcriptome sequencing.
attribute	NC_GLOBAL	projects_0_end_date	String	2012-07
attribute	NC_GLOBAL	projects_0_geolocation	String	Florida Keys & Puerto Rico
attribute	NC_GLOBAL	projects_0_name	String	Influence of Temperature and Acidification on the Dynamics of Coral Co-Infection and Resistance
attribute	NC_GLOBAL	projects_0_project_nid	String	2232
attribute	NC_GLOBAL	projects_0_start_date	String	2009-08
attribute	NC_GLOBAL	publisher_name	String	Biological and Chemical Oceanographic Data Management Office (BCO-DMO)
attribute	NC_GLOBAL	publisher_type	String	institution
attribute	NC_GLOBAL	sourceUrl	String	(local files)
attribute	NC_GLOBAL	Southernmost_Northing	double	17.8897
attribute	NC_GLOBAL	standard_name_vocabulary	String	CF Standard Name Table v55
attribute	NC_GLOBAL	subsetVariables	String	month
attribute	NC_GLOBAL	summary	String	Health surveys of the sea fan Gorgonia ventalina were carried out from 2006 to 2010 at two coral reefs in La Parguera, Puerto Rico. The proportions of healthy and abnormal G. ventalina colonies along survey transects are reported.
attribute	NC_GLOBAL	title	String	[sea_fan_survey] - Annual health surveys of the sea fan Gorgonia ventalina in La Parguera, Puerto Rico from 2006-2010 (Influence of Temperature and Acidification on the Dynamics of Coral Co-Infection and Resistance)
attribute	NC_GLOBAL	version	String	1
attribute	NC_GLOBAL	Westernmost_Easting	double	-67.0489
attribute	NC_GLOBAL	xml_source	String	osprey2erddap.update_xml() v1.3
variable	site		String
attribute	site	bcodmo_name	String	site
attribute	site	description	String	Name of the reef where sampling occurred.
attribute	site	long_name	String	Site
attribute	site	units	String	text
variable	latitude		double
attribute	latitude	_CoordinateAxisType	String	Lat
attribute	latitude	_FillValue	double	NaN
attribute	latitude	actual_range	double	17.8897, 17.9349
attribute	latitude	axis	String	Y
attribute	latitude	bcodmo_name	String	latitude
attribute	latitude	colorBarMaximum	double	90.0
attribute	latitude	colorBarMinimum	double	-90.0
attribute	latitude	description	String	Latitude of the site. North = positive.
attribute	latitude	ioos_category	String	Location
attribute	latitude	long_name	String	Latitude
attribute	latitude	nerc_identifier	String	https://vocab.nerc.ac.uk/collection/P09/current/LATX/
attribute	latitude	standard_name	String	latitude
attribute	latitude	units	String	degrees_north
variable	longitude		double
attribute	longitude	_CoordinateAxisType	String	Lon
attribute	longitude	_FillValue	double	NaN
attribute	longitude	actual_range	double	-67.0489, -66.9848
attribute	longitude	axis	String	X
attribute	longitude	bcodmo_name	String	longitude
attribute	longitude	colorBarMaximum	double	180.0
attribute	longitude	colorBarMinimum	double	-180.0
attribute	longitude	description	String	Longitude of the site. West = negative.
attribute	longitude	ioos_category	String	Location
attribute	longitude	long_name	String	Longitude
attribute	longitude	nerc_identifier	String	https://vocab.nerc.ac.uk/collection/P09/current/LONX/
attribute	longitude	standard_name	String	longitude
attribute	longitude	units	String	degrees_east
variable	year		short
attribute	year	_FillValue	short	32767
attribute	year	actual_range	short	2006, 2010
attribute	year	bcodmo_name	String	year
attribute	year	description	String	4-digit year of the survey. in YYYY format
attribute	year	long_name	String	Year
attribute	year	nerc_identifier	String	https://vocab.nerc.ac.uk/collection/P01/current/YEARXXXX/
attribute	year	units	String	unitless
variable	month		String
attribute	month	bcodmo_name	String	month_local
attribute	month	description	String	2-digit month of the survey.
attribute	month	long_name	String	Month
attribute	month	units	String	mm (01 to 12)
variable	depth		double
attribute	depth	_CoordinateAxisType	String	Height
attribute	depth	_CoordinateZisPositive	String	down
attribute	depth	_FillValue	double	NaN
attribute	depth	actual_range	double	3.0, 25.0
attribute	depth	axis	String	Z
attribute	depth	bcodmo_name	String	depth
attribute	depth	colorBarMaximum	double	8000.0
attribute	depth	colorBarMinimum	double	-8000.0
attribute	depth	colorBarPalette	String	TopographyDepth
attribute	depth	description	String	Depth of the survey.
attribute	depth	ioos_category	String	Location
attribute	depth	long_name	String	Depth
attribute	depth	nerc_identifier	String	https://vocab.nerc.ac.uk/collection/P09/current/DEPH/
attribute	depth	positive	String	down
attribute	depth	standard_name	String	depth
attribute	depth	units	String	m
variable	healthy_avg		float
attribute	healthy_avg	_FillValue	float	NaN
attribute	healthy_avg	actual_range	float	18.0, 74.66
attribute	healthy_avg	bcodmo_name	String	unknown
attribute	healthy_avg	description	String	Average percentage of sea fans per depth which were healthy.
attribute	healthy_avg	long_name	String	Healthy Avg
attribute	healthy_avg	units	String	%
variable	bleached_avg		float
attribute	bleached_avg	_FillValue	float	NaN
attribute	bleached_avg	actual_range	float	0.0, 14.03
attribute	bleached_avg	bcodmo_name	String	unknown
attribute	bleached_avg	description	String	Average percentage of sea fans per depth which were bleached.
attribute	bleached_avg	long_name	String	Bleached Avg
attribute	bleached_avg	units	String	%
variable	lg_purple_spts_avg		float
attribute	lg_purple_spts_avg	_FillValue	float	NaN
attribute	lg_purple_spts_avg	actual_range	float	3.67, 49.58
attribute	lg_purple_spts_avg	bcodmo_name	String	unknown
attribute	lg_purple_spts_avg	description	String	Average percentage of sea fans per depth which had Large Purple Spots.
attribute	lg_purple_spts_avg	long_name	String	Lg Purple Spts Avg
attribute	lg_purple_spts_avg	units	String	%
variable	MFPS_avg		float
attribute	MFPS_avg	_FillValue	float	NaN
attribute	MFPS_avg	actual_range	float	0.0, 47.75
attribute	MFPS_avg	bcodmo_name	String	unknown
attribute	MFPS_avg	description	String	Average percentage of sea fans per depth which had multi-focal purple spots (MFPS).
attribute	MFPS_avg	long_name	String	MFPS Avg
attribute	MFPS_avg	units	String	%
variable	predation_avg		float
attribute	predation_avg	_FillValue	float	NaN
attribute	predation_avg	actual_range	float	0.0, 13.33
attribute	predation_avg	bcodmo_name	String	unknown
attribute	predation_avg	description	String	Average percentage of sea fans per depth which showed signs of predation.
attribute	predation_avg	long_name	String	Predation Avg
attribute	predation_avg	units	String	%
variable	other_avg		float
attribute	other_avg	_FillValue	float	NaN
attribute	other_avg	actual_range	float	0.0, 18.94
attribute	other_avg	bcodmo_name	String	unknown
attribute	other_avg	description	String	Average percentage of sea fans per depth which had other abnormalities. See Acquisition Description.
attribute	other_avg	long_name	String	Other Avg
attribute	other_avg	units	String	%
variable	healthy_avg_sd		float
attribute	healthy_avg_sd	_FillValue	float	NaN
attribute	healthy_avg_sd	actual_range	float	5.44, 31.21
attribute	healthy_avg_sd	bcodmo_name	String	unknown
attribute	healthy_avg_sd	colorBarMaximum	double	50.0
attribute	healthy_avg_sd	colorBarMinimum	double	0.0
attribute	healthy_avg_sd	description	String	Standard deviation of healthy_avg.
attribute	healthy_avg_sd	long_name	String	Healthy Avg Sd
attribute	healthy_avg_sd	units	String	%
variable	bleached_avg_sd		float
attribute	bleached_avg_sd	_FillValue	float	NaN
attribute	bleached_avg_sd	actual_range	float	0.0, 10.97
attribute	bleached_avg_sd	bcodmo_name	String	unknown
attribute	bleached_avg_sd	colorBarMaximum	double	50.0
attribute	bleached_avg_sd	colorBarMinimum	double	0.0
attribute	bleached_avg_sd	description	String	Standard deviation of bleached_avg.
attribute	bleached_avg_sd	long_name	String	Bleached Avg Sd
attribute	bleached_avg_sd	units	String	%
variable	lg_purple_spts_avg_sd		float
attribute	lg_purple_spts_avg_sd	_FillValue	float	NaN
attribute	lg_purple_spts_avg_sd	actual_range	float	2.22, 38.01
attribute	lg_purple_spts_avg_sd	bcodmo_name	String	unknown
attribute	lg_purple_spts_avg_sd	colorBarMaximum	double	50.0
attribute	lg_purple_spts_avg_sd	colorBarMinimum	double	0.0
attribute	lg_purple_spts_avg_sd	description	String	Standard deviation of lg_purple_spts_avg.
attribute	lg_purple_spts_avg_sd	long_name	String	Lg Purple Spts Avg Sd
attribute	lg_purple_spts_avg_sd	units	String	%
variable	MFPS_avg_sd		float
attribute	MFPS_avg_sd	_FillValue	float	NaN
attribute	MFPS_avg_sd	actual_range	float	0.0, 37.5
attribute	MFPS_avg_sd	bcodmo_name	String	unknown
attribute	MFPS_avg_sd	colorBarMaximum	double	50.0
attribute	MFPS_avg_sd	colorBarMinimum	double	0.0
attribute	MFPS_avg_sd	description	String	Standard deviation of MFPS_avg.
attribute	MFPS_avg_sd	long_name	String	MFPS Avg Sd
attribute	MFPS_avg_sd	units	String	%
variable	predation_avg_sd		float
attribute	predation_avg_sd	_FillValue	float	NaN
attribute	predation_avg_sd	actual_range	float	0.0, 16.67
attribute	predation_avg_sd	bcodmo_name	String	unknown
attribute	predation_avg_sd	colorBarMaximum	double	50.0
attribute	predation_avg_sd	colorBarMinimum	double	0.0
attribute	predation_avg_sd	description	String	Standard deviation of predation_avg.
attribute	predation_avg_sd	long_name	String	Predation Avg Sd
attribute	predation_avg_sd	units	String	%
variable	other_avg_sd		float
attribute	other_avg_sd	_FillValue	float	NaN
attribute	other_avg_sd	actual_range	float	0.0, 21.43
attribute	other_avg_sd	bcodmo_name	String	unknown
attribute	other_avg_sd	colorBarMaximum	double	50.0
attribute	other_avg_sd	colorBarMinimum	double	0.0
attribute	other_avg_sd	description	String	Standard deviation of other_avg.
attribute	other_avg_sd	long_name	String	Other Avg Sd
attribute	other_avg_sd	units	String	%
variable	healthy		float
attribute	healthy	_FillValue	float	NaN
attribute	healthy	actual_range	float	0.0, 100.0
attribute	healthy	bcodmo_name	String	unknown
attribute	healthy	description	String	Percent healthy per transect.
attribute	healthy	long_name	String	Healthy
attribute	healthy	units	String	%
variable	bleached		float
attribute	bleached	_FillValue	float	NaN
attribute	bleached	actual_range	float	0.0, 25.0
attribute	bleached	bcodmo_name	String	unknown
attribute	bleached	description	String	Percent bleached per transect.
attribute	bleached	long_name	String	Bleached
attribute	bleached	units	String	%
variable	lg_purple_spts		float
attribute	lg_purple_spts	_FillValue	float	NaN
attribute	lg_purple_spts	actual_range	float	0.0, 100.0
attribute	lg_purple_spts	bcodmo_name	String	unknown
attribute	lg_purple_spts	description	String	Percent large purple spots (i.e. Aspergillosis-like) per transect.
attribute	lg_purple_spts	long_name	String	Lg Purple Spts
attribute	lg_purple_spts	units	String	%
variable	MFPS		float
attribute	MFPS	_FillValue	float	NaN
attribute	MFPS	actual_range	float	0.0, 75.0
attribute	MFPS	bcodmo_name	String	unknown
attribute	MFPS	description	String	Percent multi-focal purple spots (MFPS) per transect.
attribute	MFPS	long_name	String	MFPS
attribute	MFPS	units	String	%
variable	predation		float
attribute	predation	_FillValue	float	NaN
attribute	predation	actual_range	float	0.0, 33.33
attribute	predation	bcodmo_name	String	unknown
attribute	predation	description	String	Percent sea fans with signs of predation per transect.
attribute	predation	long_name	String	Predation
attribute	predation	units	String	%
variable	other		float
attribute	other	_FillValue	float	NaN
attribute	other	actual_range	float	0.0, 42.86
attribute	other	bcodmo_name	String	unknown
attribute	other	description	String	Percent sea fans with other abnormalities per transect. See Acquisition Description.
attribute	other	long_name	String	Other
attribute	other	units	String	%
variable	MFPS_log10		float
attribute	MFPS_log10	_FillValue	float	NaN
attribute	MFPS_log10	actual_range	float	0.0, 1.88
attribute	MFPS_log10	bcodmo_name	String	unknown
attribute	MFPS_log10	description	String	log 10 transformed percent MFPS per transect.
attribute	MFPS_log10	long_name	String	MFPS Log10
attribute	MFPS_log10	units	String	%

The information in the table above is also available in other file formats (.csv, .htmlTable, .itx, .json, .jsonlCSV1, .jsonlCSV, .jsonlKVP, .mat, .nc, .nccsv, .tsv, .xhtml) via a RESTful web service.