ERDDAP > info > bcodmo_dataset_3765

Grid DAP Data	Sub- set	Table DAP Data	Make A Graph	W M S	Source Data Files	Acces- sible	Title	Sum- mary	FGDC, ISO, Metadata	Back- ground Info	RSS	E mail	Institution	Dataset ID
	set	data	graph		files	public	[Synechococcus_ETSP] - Synechococcus counts determined by epifluorescent microscopy from samples collected on R/V Atlantis cruise AT15-61 in the Eastern Tropical South Pacific in 2010 (Syne_ETSP project) (RAPID: Synechococcus diversity and Fe stress and the relationship to dissolved metals in the Eastern Tropical South Pacific)		F   I   M	background			BCO-DMO	bcodmo_dataset_3765

The Dataset's Variables and Attributes

Row Type	Variable Name	Attribute Name	Data Type	Value
attribute	NC_GLOBAL	access_formats	String	.htmlTable,.csv,.json,.mat,.nc,.tsv,.esriCsv,.geoJson
attribute	NC_GLOBAL	acquisition_description	String	Dates are given in local (Chile) time. Clocks were not adjusted while at sea.
attribute	NC_GLOBAL	awards_0_award_nid	String	54951
attribute	NC_GLOBAL	awards_0_award_number	String	OCE-0825922
attribute	NC_GLOBAL	awards_0_data_url	String	http://www.nsf.gov/awardsearch/showAward.do?AwardNumber=0825922
attribute	NC_GLOBAL	awards_0_funder_name	String	NSF Division of Ocean Sciences
attribute	NC_GLOBAL	awards_0_funding_acronym	String	NSF OCE
attribute	NC_GLOBAL	awards_0_funding_source_nid	String	355
attribute	NC_GLOBAL	awards_0_program_manager	String	David L. Garrison
attribute	NC_GLOBAL	awards_0_program_manager_nid	String	50534
attribute	NC_GLOBAL	awards_1_award_nid	String	55106
attribute	NC_GLOBAL	awards_1_award_number	String	OCE-0943319
attribute	NC_GLOBAL	awards_1_data_url	String	http://www.nsf.gov/awardsearch/showAward.do?AwardNumber=0943319
attribute	NC_GLOBAL	awards_1_funder_name	String	NSF Division of Ocean Sciences
attribute	NC_GLOBAL	awards_1_funding_acronym	String	NSF OCE
attribute	NC_GLOBAL	awards_1_funding_source_nid	String	355
attribute	NC_GLOBAL	awards_1_program_manager	String	David L. Garrison
attribute	NC_GLOBAL	awards_1_program_manager_nid	String	50534
attribute	NC_GLOBAL	cdm_data_type	String	Other
attribute	NC_GLOBAL	comment	String	Synechococcus epifluorescent microscopy counts from AT15-61 (ETSP2010) cruise PI: Eric Webb (USC) Version: 20 July 2012
attribute	NC_GLOBAL	Conventions	String	COARDS, CF-1.6, ACDD-1.3
attribute	NC_GLOBAL	creator_email	String	info at bco-dmo.org
attribute	NC_GLOBAL	creator_name	String	BCO-DMO
attribute	NC_GLOBAL	creator_type	String	institution
attribute	NC_GLOBAL	creator_url	String	https://www.bco-dmo.org/
attribute	NC_GLOBAL	data_source	String	extract_data_as_tsv version 2.3 19 Dec 2019
attribute	NC_GLOBAL	date_created	String	2012-10-31T15:25:02Z
attribute	NC_GLOBAL	date_modified	String	2019-08-01T18:32:00Z
attribute	NC_GLOBAL	defaultDataQuery	String	&time<now
attribute	NC_GLOBAL	doi	String	10.1575/1912/bco-dmo.3765.1
attribute	NC_GLOBAL	Easternmost_Easting	double	-80.0
attribute	NC_GLOBAL	geospatial_lat_max	double	-10.0
attribute	NC_GLOBAL	geospatial_lat_min	double	-20.0
attribute	NC_GLOBAL	geospatial_lat_units	String	degrees_north
attribute	NC_GLOBAL	geospatial_lon_max	double	-80.0
attribute	NC_GLOBAL	geospatial_lon_min	double	-100.0
attribute	NC_GLOBAL	geospatial_lon_units	String	degrees_east
attribute	NC_GLOBAL	geospatial_vertical_max	double	200.0
attribute	NC_GLOBAL	geospatial_vertical_min	double	5.0
attribute	NC_GLOBAL	geospatial_vertical_positive	String	down
attribute	NC_GLOBAL	geospatial_vertical_units	String	m
attribute	NC_GLOBAL	infoUrl	String	https://www.bco-dmo.org/dataset/3765
attribute	NC_GLOBAL	institution	String	BCO-DMO
attribute	NC_GLOBAL	keywords	String	abund, abund_log, abundance, area, area_filter, bco, bco-dmo, biological, cells, cells_per_field, chemical, cruise, cruise_id, cruise_synonym, data, dataset, date, day, day_local, depth, dmo, erddap, field, fields, fields_per_filter, filt, filter, latitude, local, log, lon_360, longitude, management, month, month_local, oceanography, office, per, preliminary, sta, synonym, time, vol, vol_filt, year
attribute	NC_GLOBAL	license	String	https://www.bco-dmo.org/dataset/3765/license
attribute	NC_GLOBAL	metadata_source	String	https://www.bco-dmo.org/api/dataset/3765
attribute	NC_GLOBAL	Northernmost_Northing	double	-10.0
attribute	NC_GLOBAL	param_mapping	String	{'3765': {'lat': 'master - latitude', 'depth': 'flag - depth', 'lon': 'master - longitude'}}
attribute	NC_GLOBAL	parameter_source	String	https://www.bco-dmo.org/mapserver/dataset/3765/parameters
attribute	NC_GLOBAL	people_0_affiliation	String	University of Southern California
attribute	NC_GLOBAL	people_0_affiliation_acronym	String	USC-HIMS
attribute	NC_GLOBAL	people_0_person_name	String	Eric A Webb
attribute	NC_GLOBAL	people_0_person_nid	String	51340
attribute	NC_GLOBAL	people_0_role	String	Principal Investigator
attribute	NC_GLOBAL	people_0_role_type	String	originator
attribute	NC_GLOBAL	people_1_affiliation	String	University of Southern California
attribute	NC_GLOBAL	people_1_affiliation_acronym	String	USC-HIMS
attribute	NC_GLOBAL	people_1_person_name	String	Dr Jill Sohm
attribute	NC_GLOBAL	people_1_person_nid	String	51604
attribute	NC_GLOBAL	people_1_role	String	Scientist
attribute	NC_GLOBAL	people_1_role_type	String	originator
attribute	NC_GLOBAL	people_2_affiliation	String	Woods Hole Oceanographic Institution
attribute	NC_GLOBAL	people_2_affiliation_acronym	String	WHOI BCO-DMO
attribute	NC_GLOBAL	people_2_person_name	String	Nancy Copley
attribute	NC_GLOBAL	people_2_person_nid	String	50396
attribute	NC_GLOBAL	people_2_role	String	BCO-DMO Data Manager
attribute	NC_GLOBAL	people_2_role_type	String	related
attribute	NC_GLOBAL	people_3_affiliation	String	Woods Hole Oceanographic Institution
attribute	NC_GLOBAL	people_3_affiliation_acronym	String	WHOI BCO-DMO
attribute	NC_GLOBAL	people_3_person_name	String	Shannon Rauch
attribute	NC_GLOBAL	people_3_person_nid	String	51498
attribute	NC_GLOBAL	people_3_role	String	BCO-DMO Data Manager
attribute	NC_GLOBAL	people_3_role_type	String	related
attribute	NC_GLOBAL	project	String	Syne_ETSP
attribute	NC_GLOBAL	projects_0_acronym	String	Syne_ETSP
attribute	NC_GLOBAL	projects_0_description	String	The unicellular cyanobacterium Synechococcus is one of the most widespread and abundant photosynthetic organisms in the ocean, contributing substantially to marine primary production. It is also extremely diverse, with 16 clades identified so far. This diversity, however, has yet to be correlated with specific, well-defined ecological niches. It is important to define what these ecological niches are in order to determine the significance of Synechococcus diversity, i.e., does the clade present in a certain regime have a large impact on biogeochemical cycling in that area? In parallel, the distribution of the clades must also be defined, to able to understand more clearly the role of Synechococcus in the ocean, and how it might change in the future. In the funded project, "The role of iron (Fe) in controlling in situ distributions and activities of marine Synechococcus OCE-0825922" investigators Jill A Sohm (J.A.S.) and Eric Webb have been mapping the distribution of Synechococcus clades in the western Pacific, the North and South Atlantic, and off the coast of Los Angeles, in order to better define the ecological niches of the many clades of Synechococcus. In this project, Webb and Sohm will participate in a research cruise occurring in February 2010 in the Eastern Tropical South Pacific (ETSP), a data poor region with little known about the ecology of its picocyanobacteria. While it has been shown the Synechococcus from clade four dominate the upwelling region farther south of the proposed cruise, the diversity of the population farther offshore is much less well defined. This cruise would allow expansion of the current database of Synechococcus clade distribution to an area where there is little to no data, and add experimental field work to an existing project, testing the specific affects of Fe, light, temperature and nutrients on the diversity of field populations. These data combined with concurrent lab research will provide insight into the potential of oceanic change to affect the distribution and the activity of Synechococcus. In addition to defining the role and impact of Fe limitation on marine Synechococcus activity and diversity in the field, this project will develop field incubation-tested, quantitative PCR-based Fe stress diagnostics that will be available to the community. Furthermore, the investigators will attempt to isolate and make available Synechococcus strains from the region; as such representatives are not in existence. The upkeep and addition to the culture collection in the Webb lab is an important service for the oceanographic community, as these strains are sent to any researcher that requests them without charge. Metadata obtained on this cruise will be shared with the oceanographic community by depositing them in a national database. Lastly this project will provide valuable research cruise experience and career development for one post-doctoral fellow, J.A.S., and one graduate student.
attribute	NC_GLOBAL	projects_0_end_date	String	2010-08
attribute	NC_GLOBAL	projects_0_geolocation	String	Eastern Tropical South Pacific, coast of Chile
attribute	NC_GLOBAL	projects_0_name	String	RAPID: Synechococcus diversity and Fe stress and the relationship to dissolved metals in the Eastern Tropical South Pacific
attribute	NC_GLOBAL	projects_0_project_nid	String	2248
attribute	NC_GLOBAL	projects_0_start_date	String	2009-09
attribute	NC_GLOBAL	publisher_name	String	Biological and Chemical Oceanographic Data Management Office (BCO-DMO)
attribute	NC_GLOBAL	publisher_type	String	institution
attribute	NC_GLOBAL	sourceUrl	String	(local files)
attribute	NC_GLOBAL	Southernmost_Northing	double	-20.0
attribute	NC_GLOBAL	standard_name_vocabulary	String	CF Standard Name Table v55
attribute	NC_GLOBAL	subsetVariables	String	cruise_id,cruise_synonym,month_local,year
attribute	NC_GLOBAL	summary	String	Synechococcus counts determined by epifluorescent microscopy from samples collected on R/V Atlantis cruise AT15-61 in the Eastern Tropical South Pacific in 2010.
attribute	NC_GLOBAL	title	String	[Synechococcus_ETSP] - Synechococcus counts determined by epifluorescent microscopy from samples collected on R/V Atlantis cruise AT15-61 in the Eastern Tropical South Pacific in 2010 (Syne_ETSP project) (RAPID: Synechococcus diversity and Fe stress and the relationship to dissolved metals in the Eastern Tropical South Pacific)
attribute	NC_GLOBAL	version	String	1
attribute	NC_GLOBAL	Westernmost_Easting	double	-100.0
attribute	NC_GLOBAL	xml_source	String	osprey2erddap.update_xml() v1.3
variable	cruise_id		String
attribute	cruise_id	bcodmo_name	String	cruise_id
attribute	cruise_id	description	String	Cruise identifier.
attribute	cruise_id	long_name	String	Cruise Id
attribute	cruise_id	units	String	text
variable	cruise_synonym		String
attribute	cruise_synonym	bcodmo_name	String	cruise_id
attribute	cruise_synonym	description	String	Alternate identifier of the cruise.
attribute	cruise_synonym	long_name	String	Cruise Synonym
attribute	cruise_synonym	units	String	text
variable	sta		byte
attribute	sta	_FillValue	byte	127
attribute	sta	actual_range	byte	1, 11
attribute	sta	bcodmo_name	String	sta
attribute	sta	description	String	Station identifier.
attribute	sta	long_name	String	Sta
attribute	sta	units	String	unitless
variable	date_local		String
attribute	date_local	bcodmo_name	String	date_local
attribute	date_local	description	String	Local date. format: mm/dd/YYYY
attribute	date_local	long_name	String	Date Local
attribute	date_local	source_name	String	date_local
attribute	date_local	time_precision	String	1970-01-01
attribute	date_local	units	String	unitless
variable	month_local		String
attribute	month_local	bcodmo_name	String	month_local
attribute	month_local	description	String	2-digit month of year, local. format: mm (01 to 12)
attribute	month_local	long_name	String	Month Local
attribute	month_local	units	String	unitless
variable	day_local		String
attribute	day_local	bcodmo_name	String	day_local
attribute	day_local	description	String	2-digit day of month, local. format: dd (01 to 31)
attribute	day_local	long_name	String	Day Local
attribute	day_local	units	String	unitless
variable	year		short
attribute	year	_FillValue	short	32767
attribute	year	actual_range	short	2010, 2010
attribute	year	bcodmo_name	String	year
attribute	year	description	String	4-digit year. format: YYYY
attribute	year	long_name	String	Year
attribute	year	nerc_identifier	String	https://vocab.nerc.ac.uk/collection/P01/current/YEARXXXX/
attribute	year	units	String	unitless
variable	longitude		double
attribute	longitude	_CoordinateAxisType	String	Lon
attribute	longitude	_FillValue	double	NaN
attribute	longitude	actual_range	double	-100.0, -80.0
attribute	longitude	axis	String	X
attribute	longitude	bcodmo_name	String	longitude
attribute	longitude	colorBarMaximum	double	180.0
attribute	longitude	colorBarMinimum	double	-180.0
attribute	longitude	description	String	Longitude in degrees East. Negative = West.
attribute	longitude	ioos_category	String	Location
attribute	longitude	long_name	String	Longitude
attribute	longitude	nerc_identifier	String	https://vocab.nerc.ac.uk/collection/P09/current/LONX/
attribute	longitude	standard_name	String	longitude
attribute	longitude	units	String	degrees_east
variable	lon_360		short
attribute	lon_360	_FillValue	short	32767
attribute	lon_360	actual_range	short	260, 280
attribute	lon_360	bcodmo_name	String	lon_360
attribute	lon_360	colorBarMaximum	double	180.0
attribute	lon_360	colorBarMinimum	double	-180.0
attribute	lon_360	description	String	Longitude ranging from 0 to 360 degrees. Calculated from the original lon_360 provided by PI.
attribute	lon_360	long_name	String	Longitude
attribute	lon_360	standard_name	String	longitude
attribute	lon_360	units	String	degrees
variable	latitude		double
attribute	latitude	_CoordinateAxisType	String	Lat
attribute	latitude	_FillValue	double	NaN
attribute	latitude	actual_range	double	-20.0, -10.0
attribute	latitude	axis	String	Y
attribute	latitude	bcodmo_name	String	latitude
attribute	latitude	colorBarMaximum	double	90.0
attribute	latitude	colorBarMinimum	double	-90.0
attribute	latitude	description	String	Latitude in degrees North. Negative = South.
attribute	latitude	ioos_category	String	Location
attribute	latitude	long_name	String	Latitude
attribute	latitude	nerc_identifier	String	https://vocab.nerc.ac.uk/collection/P09/current/LATX/
attribute	latitude	standard_name	String	latitude
attribute	latitude	units	String	degrees_north
variable	depth		double
attribute	depth	_CoordinateAxisType	String	Height
attribute	depth	_CoordinateZisPositive	String	down
attribute	depth	_FillValue	double	NaN
attribute	depth	actual_range	double	5.0, 200.0
attribute	depth	axis	String	Z
attribute	depth	bcodmo_name	String	depth
attribute	depth	colorBarMaximum	double	8000.0
attribute	depth	colorBarMinimum	double	-8000.0
attribute	depth	colorBarPalette	String	TopographyDepth
attribute	depth	description	String	Sample depth.
attribute	depth	ioos_category	String	Location
attribute	depth	long_name	String	Depth
attribute	depth	nerc_identifier	String	https://vocab.nerc.ac.uk/collection/P09/current/DEPH/
attribute	depth	positive	String	down
attribute	depth	standard_name	String	depth
attribute	depth	units	String	m
variable	cells_per_field		float
attribute	cells_per_field	_FillValue	float	NaN
attribute	cells_per_field	actual_range	float	0.4, 160.0
attribute	cells_per_field	bcodmo_name	String	unknown
attribute	cells_per_field	description	String	cells/field
attribute	cells_per_field	long_name	String	Cells Per Field
attribute	cells_per_field	units	String	unitless
variable	vol_filt		short
attribute	vol_filt	_FillValue	short	32767
attribute	vol_filt	actual_range	short	5, 300
attribute	vol_filt	bcodmo_name	String	vol_filt
attribute	vol_filt	description	String	Volume filtered in milliliters.
attribute	vol_filt	long_name	String	Vol Filt
attribute	vol_filt	units	String	mL
variable	area_filter		double
attribute	area_filter	_FillValue	double	NaN
attribute	area_filter	actual_range	double	1.886911488E8, 2.5446798E8
attribute	area_filter	bcodmo_name	String	unknown
attribute	area_filter	description	String	Area of filter in square micrometers.
attribute	area_filter	long_name	String	Area Filter
attribute	area_filter	units	String	um^2
variable	fields_per_filter		float
attribute	fields_per_filter	_FillValue	float	NaN
attribute	fields_per_filter	actual_range	float	662.0, 2647.9
attribute	fields_per_filter	bcodmo_name	String	unknown
attribute	fields_per_filter	description	String	fields/filter
attribute	fields_per_filter	long_name	String	Fields Per Filter
attribute	fields_per_filter	units	String	unitless
variable	abundance		short
attribute	abundance	_FillValue	short	32767
attribute	abundance	actual_range	short	3, 16886
attribute	abundance	bcodmo_name	String	coccus_s_mic
attribute	abundance	description	String	Synechococcus abundance in cells per milliliter.
attribute	abundance	long_name	String	Abundance
attribute	abundance	nerc_identifier	String	https://vocab.nerc.ac.uk/collection/P01/current/P700M90Z/
attribute	abundance	units	String	cells/mL
variable	abund_log		float
attribute	abund_log	_FillValue	float	NaN
attribute	abund_log	actual_range	float	0.53, 4.23
attribute	abund_log	bcodmo_name	String	coccus_s_mic
attribute	abund_log	description	String	Log of synechococcus abundance in cells per milliliter.
attribute	abund_log	long_name	String	Abund Log
attribute	abund_log	nerc_identifier	String	https://vocab.nerc.ac.uk/collection/P01/current/P700M90Z/
attribute	abund_log	units	String	cells/mL

The information in the table above is also available in other file formats (.csv, .htmlTable, .itx, .json, .jsonlCSV1, .jsonlCSV, .jsonlKVP, .mat, .nc, .nccsv, .tsv, .xhtml) via a RESTful web service.