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Grid DAP Data | Sub- set | Table DAP Data | Make A Graph | W M S | Source Data Files | Acces- sible | Title | Sum- mary | FGDC, ISO, Metadata | Back- ground Info | RSS | E | Institution | Dataset ID |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
set | data | graph | files | public | [chlorophyll_a] - Chlorophyll-a concentration in microcosm experiments from samples collected by R/V E.O. Wilson in the Gulf of Mexico, Alabama (En-Gen DMSP Cycling project) (En-Gen: A Functional Genomics Approach to Organic Sulfur Cycling in the Ocean) | F I M | background | BCO-DMO | bcodmo_dataset_3853 |
Row Type | Variable Name | Attribute Name | Data Type | Value |
---|---|---|---|---|
attribute | NC_GLOBAL | access_formats | String | .htmlTable,.csv,.json,.mat,.nc,.tsv,.esriCsv,.geoJson |
attribute | NC_GLOBAL | acquisition_description | String | See Howard et al. 2010 and Rinta-Kanto et al. 2011 for detailed methods, summarized below: \"In October 2006, seawater was collected from surface waters (<1 m deep) in the Gulf of Mexico off the coast of Dauphin Island, AL (lat: 30 03.041N; lon: 87 59.708W). Water was filtered through a 200-um mesh into six 20-liter polyethylene Cubitainers with minimal headspace. Three microcosms were amended with 10 um sodium nitrate (NaNO3) and 0.6 um potassium phosphate (K2HPO4) to serve as the experimental microcosms. Three microcosms were left untreated to serve as the control. The Cubitainers were maintained at 27 degrees C on a 12-hour light/dark cycle for the duration of the experiment. Chemical and activity measurements were collected from the microcosms at the beginning of the experiment (Day 0) and every day for the duration of the experiment at the same time. Chlorophyll-a samples were collected by filtration on Whatman GF/F fiters. The filters were extracted in 90% acetone for 24 hours at -20 degrees C. The extracts were quantified by fluorometry on a Turner Designs TD-700.\" |
attribute | NC_GLOBAL | awards_0_award_nid | String | 55114 |
attribute | NC_GLOBAL | awards_0_award_number | String | OCE-0724017 |
attribute | NC_GLOBAL | awards_0_data_url | String | http://www.nsf.gov/awardsearch/showAward.do?AwardNumber=0724017 |
attribute | NC_GLOBAL | awards_0_funder_name | String | NSF Division of Ocean Sciences |
attribute | NC_GLOBAL | awards_0_funding_acronym | String | NSF OCE |
attribute | NC_GLOBAL | awards_0_funding_source_nid | String | 355 |
attribute | NC_GLOBAL | awards_0_program_manager | String | David L. Garrison |
attribute | NC_GLOBAL | awards_0_program_manager_nid | String | 50534 |
attribute | NC_GLOBAL | cdm_data_type | String | Other |
attribute | NC_GLOBAL | comment | String | Chlorophyll-a concentration in microcosm experiments PI: Mary Ann Moran (UGA); Co-PIs: Ronald Kiene (DISL) and William Whitman (UGA) Version: 19 Nov 2012 |
attribute | NC_GLOBAL | Conventions | String | COARDS, CF-1.6, ACDD-1.3 |
attribute | NC_GLOBAL | creator_email | String | info at bco-dmo.org |
attribute | NC_GLOBAL | creator_name | String | BCO-DMO |
attribute | NC_GLOBAL | creator_type | String | institution |
attribute | NC_GLOBAL | creator_url | String | https://www.bco-dmo.org/ |
attribute | NC_GLOBAL | data_source | String | extract_data_as_tsv version 2.3 19 Dec 2019 |
attribute | NC_GLOBAL | date_created | String | 2013-01-11T18:17:23Z |
attribute | NC_GLOBAL | date_modified | String | 2019-11-01T15:00:58Z |
attribute | NC_GLOBAL | defaultDataQuery | String | &time<now |
attribute | NC_GLOBAL | doi | String | 10.1575/1912/bco-dmo.3853.1 |
attribute | NC_GLOBAL | Easternmost_Easting | double | -87.99513 |
attribute | NC_GLOBAL | geospatial_lat_max | double | 30.05068 |
attribute | NC_GLOBAL | geospatial_lat_min | double | 30.05068 |
attribute | NC_GLOBAL | geospatial_lat_units | String | degrees_north |
attribute | NC_GLOBAL | geospatial_lon_max | double | -87.99513 |
attribute | NC_GLOBAL | geospatial_lon_min | double | -87.99513 |
attribute | NC_GLOBAL | geospatial_lon_units | String | degrees_east |
attribute | NC_GLOBAL | infoUrl | String | https://www.bco-dmo.org/dataset/3853 |
attribute | NC_GLOBAL | institution | String | BCO-DMO |
attribute | NC_GLOBAL | instruments_0_acronym | String | bucket |
attribute | NC_GLOBAL | instruments_0_dataset_instrument_description | String | Water was collected in the field using a clean bucket. |
attribute | NC_GLOBAL | instruments_0_dataset_instrument_nid | String | 6036 |
attribute | NC_GLOBAL | instruments_0_description | String | A bucket used to collect surface sea water samples. |
attribute | NC_GLOBAL | instruments_0_instrument_external_identifier | String | https://vocab.nerc.ac.uk/collection/L22/current/TOOL0536/ |
attribute | NC_GLOBAL | instruments_0_instrument_name | String | bucket |
attribute | NC_GLOBAL | instruments_0_instrument_nid | String | 569 |
attribute | NC_GLOBAL | instruments_0_supplied_name | String | bucket |
attribute | NC_GLOBAL | instruments_1_acronym | String | TD-700 |
attribute | NC_GLOBAL | instruments_1_dataset_instrument_description | String | A Turner Designs TD-700 was used. |
attribute | NC_GLOBAL | instruments_1_dataset_instrument_nid | String | 6037 |
attribute | NC_GLOBAL | instruments_1_description | String | The TD-700 Laboratory Fluorometer is a benchtop fluorometer designed to detect fluorescence over the UV to red range. The instrument can measure concentrations of a variety of compounds, including chlorophyll-a and fluorescent dyes, and is thus suitable for a range of applications, including chlorophyll, water quality monitoring and fluorescent tracer studies. Data can be output as concentrations or raw fluorescence measurements. |
attribute | NC_GLOBAL | instruments_1_instrument_external_identifier | String | https://vocab.nerc.ac.uk/collection/L22/current/TOOL0510/ |
attribute | NC_GLOBAL | instruments_1_instrument_name | String | Turner Designs 700 Laboratory Fluorometer |
attribute | NC_GLOBAL | instruments_1_instrument_nid | String | 694 |
attribute | NC_GLOBAL | instruments_1_supplied_name | String | Turner Designs 700 Laboratory Fluorometer |
attribute | NC_GLOBAL | keywords | String | bco, bco-dmo, biological, chemical, chemistry, chl, chl_a, chl_a_mean, chl_a_sd, chlorophyll, concentration, concentration_of_chlorophyll_in_sea_water, data, dataset, day, desc, dmo, earth, Earth Science > Oceans > Ocean Chemistry > Chlorophyll, erddap, exp, exp_day, exp_id, ext, filt, fluor, latitude, longitude, management, microcosm, microcosm_type, month, ocean, oceanography, oceans, office, preliminary, replicate, science, sea, seawater, site, site_desc, type, vol, vol_ext, vol_filt, water, year |
attribute | NC_GLOBAL | keywords_vocabulary | String | GCMD Science Keywords |
attribute | NC_GLOBAL | license | String | https://www.bco-dmo.org/dataset/3853/license |
attribute | NC_GLOBAL | metadata_source | String | https://www.bco-dmo.org/api/dataset/3853 |
attribute | NC_GLOBAL | Northernmost_Northing | double | 30.05068 |
attribute | NC_GLOBAL | param_mapping | String | {'3853': {'lat': 'master - latitude', 'lon': 'master - longitude'}} |
attribute | NC_GLOBAL | parameter_source | String | https://www.bco-dmo.org/mapserver/dataset/3853/parameters |
attribute | NC_GLOBAL | people_0_affiliation | String | University of Georgia |
attribute | NC_GLOBAL | people_0_affiliation_acronym | String | UGA |
attribute | NC_GLOBAL | people_0_person_name | String | Mary Ann Moran |
attribute | NC_GLOBAL | people_0_person_nid | String | 51592 |
attribute | NC_GLOBAL | people_0_role | String | Principal Investigator |
attribute | NC_GLOBAL | people_0_role_type | String | originator |
attribute | NC_GLOBAL | people_1_affiliation | String | Dauphin Island Sea Lab |
attribute | NC_GLOBAL | people_1_affiliation_acronym | String | DISL |
attribute | NC_GLOBAL | people_1_person_name | String | Ronald Kiene |
attribute | NC_GLOBAL | people_1_person_nid | String | 51594 |
attribute | NC_GLOBAL | people_1_role | String | Co-Principal Investigator |
attribute | NC_GLOBAL | people_1_role_type | String | originator |
attribute | NC_GLOBAL | people_2_affiliation | String | University of Georgia |
attribute | NC_GLOBAL | people_2_affiliation_acronym | String | UGA |
attribute | NC_GLOBAL | people_2_person_name | String | William Whitman |
attribute | NC_GLOBAL | people_2_person_nid | String | 51593 |
attribute | NC_GLOBAL | people_2_role | String | Co-Principal Investigator |
attribute | NC_GLOBAL | people_2_role_type | String | originator |
attribute | NC_GLOBAL | people_3_affiliation | String | Woods Hole Oceanographic Institution |
attribute | NC_GLOBAL | people_3_affiliation_acronym | String | WHOI BCO-DMO |
attribute | NC_GLOBAL | people_3_person_name | String | Shannon Rauch |
attribute | NC_GLOBAL | people_3_person_nid | String | 51498 |
attribute | NC_GLOBAL | people_3_role | String | BCO-DMO Data Manager |
attribute | NC_GLOBAL | people_3_role_type | String | related |
attribute | NC_GLOBAL | project | String | En-Gen DMSP Cycling |
attribute | NC_GLOBAL | projects_0_acronym | String | En-Gen DMSP Cycling |
attribute | NC_GLOBAL | projects_0_description | String | The recent discovery of key genes that mediate competing pathways at a critical juncture in the marine sulfur cycle has allowed biogeochemists to make rapid advances in understanding where and when sulfur transformations occur in the ocean, and most importantly, what factors regulate them. This project describes an environmental functional genomics project that will rapidly increase our knowledge of the role that bacterioplankton play in dimethylsulfoniopropionate (DMSP) cycling in ocean surface waters, focusing particularly on biological controls of volatile sulfur exchange across the ocean/atmosphere boundary. The investigators have asked three critical hypotheses to explain the regulation of bacterial DMSP degradation: that involve investigations on the energy constraints of DMSP cycling, the role that DMSP concentration in the oceans plays, and the sulfur requirements for bacterial growth. These research areas serve as the focus for hypothesis-driven laboratory and field studies using functional genomics approaches that will track patterns in gene expression in relation to sulfur metabolism. The hypotheses will be tested with: 1) chemostat systems with a model marine bacterium Silicibacter pomeroyi; 2) microcosm experiments with Gulf of Mexico seawater; and 3) field studies at various sites in the Gulf of Mexico. Marine bacterioplankton play a key role in regulating the flux of DMSP-derived sulfur to the atmosphere, a process of great importance for global climate regulation and marine productivity. The investigators will also be involved in graduate and undergraduate student education, and two post-doctoral associates will be trained to address multidisciplinary challenges in environmental microbiology. High school biology students in Athens, GA will participate in marine microbial biology research that includes bacterial diversity and discovery studies in coastal Georgia, follow-up training in molecular tools and bioinformatics in their own classroom, and summer internships at the University of Georgia and Dauphin Island Sea Laboratory. (The description above is from the NSF Award Abstract). |
attribute | NC_GLOBAL | projects_0_end_date | String | 2012-09 |
attribute | NC_GLOBAL | projects_0_geolocation | String | Sapelo Island, GA, USA, 31.4° N Lat, 81.3° W Lon / Dauphin Island, AL, USA, 30.3 ° N Lat, 88.1° W Lon |
attribute | NC_GLOBAL | projects_0_name | String | En-Gen: A Functional Genomics Approach to Organic Sulfur Cycling in the Ocean |
attribute | NC_GLOBAL | projects_0_project_nid | String | 2244 |
attribute | NC_GLOBAL | projects_0_start_date | String | 2007-10 |
attribute | NC_GLOBAL | publisher_name | String | Biological and Chemical Oceanographic Data Management Office (BCO-DMO) |
attribute | NC_GLOBAL | publisher_type | String | institution |
attribute | NC_GLOBAL | sourceUrl | String | (local files) |
attribute | NC_GLOBAL | Southernmost_Northing | double | 30.05068 |
attribute | NC_GLOBAL | standard_name_vocabulary | String | CF Standard Name Table v55 |
attribute | NC_GLOBAL | subsetVariables | String | exp_id,latitude,longitude,site_desc,month,year,vol_filt,vol_ext |
attribute | NC_GLOBAL | summary | String | Chlorophyll-a measurements from control and experimental microcosms from the Dauphin Island Cubitainer Experiment (DICE). |
attribute | NC_GLOBAL | title | String | [chlorophyll_a] - Chlorophyll-a concentration in microcosm experiments from samples collected by R/V E.O. Wilson in the Gulf of Mexico, Alabama (En-Gen DMSP Cycling project) (En-Gen: A Functional Genomics Approach to Organic Sulfur Cycling in the Ocean) |
attribute | NC_GLOBAL | version | String | 1 |
attribute | NC_GLOBAL | Westernmost_Easting | double | -87.99513 |
attribute | NC_GLOBAL | xml_source | String | osprey2erddap.update_xml() v1.3 |
variable | exp_id | String | ||
attribute | exp_id | bcodmo_name | String | exp_id |
attribute | exp_id | description | String | Name of the experiment. DICE = Dauphin Island Cubitainer Experiment. |
attribute | exp_id | long_name | String | Exp Id |
attribute | exp_id | units | String | text |
variable | latitude | double | ||
attribute | latitude | _CoordinateAxisType | String | Lat |
attribute | latitude | _FillValue | double | NaN |
attribute | latitude | actual_range | double | 30.05068, 30.05068 |
attribute | latitude | axis | String | Y |
attribute | latitude | bcodmo_name | String | latitude |
attribute | latitude | colorBarMaximum | double | 90.0 |
attribute | latitude | colorBarMinimum | double | -90.0 |
attribute | latitude | description | String | Latitude of the collection site. North = Positive. |
attribute | latitude | ioos_category | String | Location |
attribute | latitude | long_name | String | Latitude |
attribute | latitude | nerc_identifier | String | https://vocab.nerc.ac.uk/collection/P09/current/LATX/ |
attribute | latitude | standard_name | String | latitude |
attribute | latitude | units | String | degrees_north |
variable | longitude | double | ||
attribute | longitude | _CoordinateAxisType | String | Lon |
attribute | longitude | _FillValue | double | NaN |
attribute | longitude | actual_range | double | -87.99513, -87.99513 |
attribute | longitude | axis | String | X |
attribute | longitude | bcodmo_name | String | longitude |
attribute | longitude | colorBarMaximum | double | 180.0 |
attribute | longitude | colorBarMinimum | double | -180.0 |
attribute | longitude | description | String | Longitude of the collection site. West = Negative. |
attribute | longitude | ioos_category | String | Location |
attribute | longitude | long_name | String | Longitude |
attribute | longitude | nerc_identifier | String | https://vocab.nerc.ac.uk/collection/P09/current/LONX/ |
attribute | longitude | standard_name | String | longitude |
attribute | longitude | units | String | degrees_east |
variable | site_desc | String | ||
attribute | site_desc | bcodmo_name | String | site_descrip |
attribute | site_desc | description | String | Description of the sample collection site. |
attribute | site_desc | long_name | String | Site Desc |
attribute | site_desc | units | String | text |
variable | exp_day | String | ||
attribute | exp_day | bcodmo_name | String | unknown |
attribute | exp_day | description | String | Day of the experiment. First experimental day = T0. |
attribute | exp_day | long_name | String | Exp Day |
attribute | exp_day | units | String | unitless |
variable | month | byte | ||
attribute | month | _FillValue | byte | 127 |
attribute | month | actual_range | byte | 10, 10 |
attribute | month | bcodmo_name | String | month |
attribute | month | description | String | 2-digit month of year. |
attribute | month | long_name | String | Month |
attribute | month | nerc_identifier | String | https://vocab.nerc.ac.uk/collection/P01/current/MNTHXXXX/ |
attribute | month | units | String | mm (01 to 12) |
variable | day | byte | ||
attribute | day | _FillValue | byte | 127 |
attribute | day | actual_range | byte | 10, 16 |
attribute | day | bcodmo_name | String | day |
attribute | day | description | String | 2-digit day of month. |
attribute | day | long_name | String | Day |
attribute | day | nerc_identifier | String | https://vocab.nerc.ac.uk/collection/P01/current/DAYXXXXX/ |
attribute | day | units | String | dd (01 to 31) |
variable | year | short | ||
attribute | year | _FillValue | short | 32767 |
attribute | year | actual_range | short | 2006, 2006 |
attribute | year | bcodmo_name | String | year |
attribute | year | description | String | 4-digit year in YYYY format. |
attribute | year | long_name | String | Year |
attribute | year | nerc_identifier | String | https://vocab.nerc.ac.uk/collection/P01/current/YEARXXXX/ |
attribute | year | units | String | unitless |
variable | microcosm | String | ||
attribute | microcosm | bcodmo_name | String | sample |
attribute | microcosm | description | String | Identifier of the microcosm. C0 and E0 are the time zero (initial) samples that represent the starting chl-a concentrations in the seawater. |
attribute | microcosm | long_name | String | Microcosm |
attribute | microcosm | nerc_identifier | String | https://vocab.nerc.ac.uk/collection/P02/current/ACYC/ |
attribute | microcosm | units | String | unitless |
variable | microcosm_type | String | ||
attribute | microcosm_type | bcodmo_name | String | sample_descrip |
attribute | microcosm_type | description | String | Type of microcosm: experimental or control. |
attribute | microcosm_type | long_name | String | Microcosm Type |
attribute | microcosm_type | units | String | text |
variable | chl_a_mean | float | ||
attribute | chl_a_mean | _FillValue | float | NaN |
attribute | chl_a_mean | actual_range | float | 0.378, 6.472 |
attribute | chl_a_mean | bcodmo_name | String | chl_a_fluor |
attribute | chl_a_mean | colorBarMaximum | double | 30.0 |
attribute | chl_a_mean | colorBarMinimum | double | 0.03 |
attribute | chl_a_mean | colorBarScale | String | Log |
attribute | chl_a_mean | description | String | Mean chlorophyll a per microcosm per day. |
attribute | chl_a_mean | long_name | String | Concentration Of Chlorophyll In Sea Water |
attribute | chl_a_mean | nerc_identifier | String | https://vocab.nerc.ac.uk/collection/P01/current/CPHLFLPC/ |
attribute | chl_a_mean | units | String | micrograms/Liter |
variable | chl_a_sd | float | ||
attribute | chl_a_sd | _FillValue | float | NaN |
attribute | chl_a_sd | actual_range | float | 0.0, 0.773 |
attribute | chl_a_sd | bcodmo_name | String | unknown |
attribute | chl_a_sd | colorBarMaximum | double | 50.0 |
attribute | chl_a_sd | colorBarMinimum | double | 0.0 |
attribute | chl_a_sd | description | String | Standard deviation of chl_a_mean. |
attribute | chl_a_sd | long_name | String | Chl A Sd |
attribute | chl_a_sd | units | String | micrograms/Liter |
variable | replicate | String | ||
attribute | replicate | bcodmo_name | String | replicate |
attribute | replicate | description | String | Identifier of the technical replicate (pulled from the same microcosm). |
attribute | replicate | long_name | String | Replicate |
attribute | replicate | units | String | unitless |
variable | vol_filt | byte | ||
attribute | vol_filt | _FillValue | byte | 127 |
attribute | vol_filt | actual_range | byte | 100, 100 |
attribute | vol_filt | bcodmo_name | String | fluor_vol_filt |
attribute | vol_filt | description | String | Volume of water filtered measured in milliliters. |
attribute | vol_filt | long_name | String | Vol Filt |
attribute | vol_filt | nerc_identifier | String | https://vocab.nerc.ac.uk/collection/P01/current/VOLFMCXX/ |
attribute | vol_filt | units | String | mL |
variable | vol_ext | byte | ||
attribute | vol_ext | _FillValue | byte | 127 |
attribute | vol_ext | actual_range | byte | 5, 5 |
attribute | vol_ext | bcodmo_name | String | unknown |
attribute | vol_ext | description | String | Volume extracted in milliliters. |
attribute | vol_ext | long_name | String | Vol Ext |
attribute | vol_ext | units | String | mL |
variable | fluor | float | ||
attribute | fluor | _FillValue | float | NaN |
attribute | fluor | actual_range | float | 6.84, 140.02 |
attribute | fluor | bcodmo_name | String | unknown |
attribute | fluor | description | String | Fluorometer reading. (The fluorometer excites the sample with blue light and red fluorescence is measured. The maximum emission is 668 nm.) |
attribute | fluor | long_name | String | Fluor |
attribute | fluor | units | String | fluorometer reading |
variable | chl_a | float | ||
attribute | chl_a | _FillValue | float | NaN |
attribute | chl_a | actual_range | float | 0.342, 7.001 |
attribute | chl_a | bcodmo_name | String | chl_a_fluor |
attribute | chl_a | colorBarMaximum | double | 30.0 |
attribute | chl_a | colorBarMinimum | double | 0.03 |
attribute | chl_a | colorBarScale | String | Log |
attribute | chl_a | description | String | Chlorophyll-a. |
attribute | chl_a | long_name | String | Concentration Of Chlorophyll In Sea Water |
attribute | chl_a | nerc_identifier | String | https://vocab.nerc.ac.uk/collection/P01/current/CPHLFLPC/ |
attribute | chl_a | units | String | micrograms/Liter |
The information in the table above is also available in other file formats (.csv, .htmlTable, .itx, .json, .jsonlCSV1, .jsonlCSV, .jsonlKVP, .mat, .nc, .nccsv, .tsv, .xhtml) via a RESTful web service.