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   set  data   graph     files  public 2B: Bioavailability of dissolved organic carbon produced by Dactyliosolen fragilissimus grown
under different pCO2 and temperature condition from UCSB Marine Science Institute Passow Lab
from 2009 to 2010 (OA - Effects of High CO2 project)
   ?     I   M   background (external link) RSS Subscribe BCO-DMO bcodmo_dataset_471724

The Dataset's Variables and Attributes

Row Type Variable Name Attribute Name Data Type Value
attribute NC_GLOBAL access_formats String .htmlTable,.csv,.json,.mat,.nc,.tsv,.esriCsv,.geoJson
attribute NC_GLOBAL acquisition_description String Data Set: 2B
5/13/2013
Mini Remin Exp
OA6 Bioavailability Exp 2013

Is there a siginificant difference in the bioavailability of organic matter
produced by D. frag as a result of varied temperature and pCO2 regimes?

Does this organic matter change become less available (higher C:N) as the
phytos become more nutrient stressed?

Treatments:
1. 20deg 400ppm 2 days post nutrient depletion
2. 20deg 400ppm 4 days post nutrient depletion
3. 20deg 400ppm 6 days post nutrient depletion
4. 20deg 1000ppm 2 days post nutrient depletion
5. 20deg 1000ppm 4 days post nutrient depletion
6. 20deg 1000ppm 6 days post nutrient depletion
7. 15deg 400ppm 2 days post nutrient depletion
8. 15deg 400ppm 4 days post nutrient depletion
9. 15deg 400ppm 6 days post nutrient depletion
10. 15deg 1000ppm 2 days post nutrient depletion
11. 15deg 1000ppm 4 days post nutrient depletion
12. 15deg 1000ppm 6 days post nutrient depletion

Set-up:
Sample:
These bottles were then placed in the small incubator in the Chapman lab at
12 deg (same temperature of the innoclum during time of collection)

210ml: 20% 1.22um filtered campus point SW (collected 1000 on 03/16/2013)
Total volume per 2L PC bottle (treatment) = 1.06L

The total volume was combined at 1030 and then each 2L PC bottle (with 1.5L
total volume) was split between duplicate 500ml PC bottles (the remaining
volume was used for T0 sampling)

These bottles were then placed in the small incubator in the Chapman lab at 12
deg (same temperature of the innoclum during time of collection)

Sampling Schedule:
Time point Time (hrs) Date Time Samples Taken From what T0 0 5/14/2013 930
DOC, FCM From 2L PC bottles T1 5/15/2013 1230 FCM all 24 T2 5/16/2013 1210 FCM
all 24 T3 3.5 5/17/2013 1100 DOC, FCM all 24 T4 5/18/2013 1400 FCM all 24 T5
5/19/2013 1030 FCM all 24 T6 148 5/20/2013 1330 FCM all 24 T7 160.75 5/21/2013
945 FCM all 24 T8 191 5/22/2013 1600 DOC, FCM all 24 TF ERH?? 6/6/2013 ERH??
DOC all 24
attribute NC_GLOBAL awards_0_award_nid String 55209
attribute NC_GLOBAL awards_0_award_number String OCE-1041038
attribute NC_GLOBAL awards_0_data_url String http://www.nsf.gov/awardsearch/showAward?AWD_ID=1041038&HistoricalAwards=false (external link)
attribute NC_GLOBAL awards_0_funder_name String NSF Division of Ocean Sciences
attribute NC_GLOBAL awards_0_funding_acronym String NSF OCE
attribute NC_GLOBAL awards_0_funding_source_nid String 355
attribute NC_GLOBAL awards_0_program_manager String Donald L. Rice
attribute NC_GLOBAL awards_0_program_manager_nid String 51467
attribute NC_GLOBAL cdm_data_type String Other
attribute NC_GLOBAL comment String OA_Effects_of_HighCO2
Version: 21 November 2013
PIs: Passow, Carlson, Brzezinski
Data Set #2B: Bioavailability of dissolved organic carbon produced by Dactyliosolen fragilissimus grown under different pCO2 and temperature condition (Experiment OA6)


Data Set #2B: Bioavailability of dissolved organic carbon produced by Dactyliosolen fragilissimus grown under different pCO2 and temperature condition (Experiment OA6)
attribute NC_GLOBAL Conventions String COARDS, CF-1.6, ACDD-1.3
attribute NC_GLOBAL creator_email String info at bco-dmo.org
attribute NC_GLOBAL creator_name String BCO-DMO
attribute NC_GLOBAL creator_type String institution
attribute NC_GLOBAL creator_url String https://www.bco-dmo.org/ (external link)
attribute NC_GLOBAL data_source String extract_data_as_tsv version 2.3 19 Dec 2019
attribute NC_GLOBAL date_created String 2013-11-18T21:14:20Z
attribute NC_GLOBAL date_modified String 2020-01-24T18:40:22Z
attribute NC_GLOBAL defaultDataQuery String &time<now
attribute NC_GLOBAL doi String 10.1575/1912/bco-dmo.471724.1
attribute NC_GLOBAL Easternmost_Easting double -119.842
attribute NC_GLOBAL geospatial_lat_max double 34.4126
attribute NC_GLOBAL geospatial_lat_min double 34.4126
attribute NC_GLOBAL geospatial_lat_units String degrees_north
attribute NC_GLOBAL geospatial_lon_max double -119.842
attribute NC_GLOBAL geospatial_lon_min double -119.842
attribute NC_GLOBAL geospatial_lon_units String degrees_east
attribute NC_GLOBAL infoUrl String https://www.bco-dmo.org/dataset/471724 (external link)
attribute NC_GLOBAL institution String BCO-DMO
attribute NC_GLOBAL keywords String 196point25, 73point5, bco, bco-dmo, biological, bottle, Bottle_Num, carbon, carbon dioxide, chemical, co2, commerce, data, dataset, days, days_post_nut_depletion, department, depletion, dev, dioxide, dmo, doc, DOC_T0_0, DOC_T0_0_St_dev, DOC_T3_73point5, DOC_T3_73point5_St_dev, DOC_T8_196point25, DOC_T8_196point25_St_dev, DOC_Tx_600, DOC_Tx_600_St_dev, erddap, lab, Lab_Id, latitude, longitude, management, num, nut, oceanography, office, pCO2, post, preliminary, Temp, temperature
attribute NC_GLOBAL license String https://www.bco-dmo.org/dataset/471724/license (external link)
attribute NC_GLOBAL metadata_source String https://www.bco-dmo.org/api/dataset/471724 (external link)
attribute NC_GLOBAL Northernmost_Northing double 34.4126
attribute NC_GLOBAL param_mapping String {'471724': {'Lat': 'master - latitude', 'Lon': 'master - longitude'}}
attribute NC_GLOBAL parameter_source String https://www.bco-dmo.org/mapserver/dataset/471724/parameters (external link)
attribute NC_GLOBAL people_0_affiliation String University of California-Santa Barbara
attribute NC_GLOBAL people_0_affiliation_acronym String UCSB-MSI
attribute NC_GLOBAL people_0_person_name String Dr Uta Passow
attribute NC_GLOBAL people_0_person_nid String 51317
attribute NC_GLOBAL people_0_role String Principal Investigator
attribute NC_GLOBAL people_0_role_type String originator
attribute NC_GLOBAL people_1_affiliation String University of California-Santa Barbara
attribute NC_GLOBAL people_1_affiliation_acronym String UCSB-MSI
attribute NC_GLOBAL people_1_person_name String Mark A. Brzezinski
attribute NC_GLOBAL people_1_person_nid String 50663
attribute NC_GLOBAL people_1_role String Co-Principal Investigator
attribute NC_GLOBAL people_1_role_type String originator
attribute NC_GLOBAL people_2_affiliation String University of California-Santa Barbara
attribute NC_GLOBAL people_2_affiliation_acronym String UCSB-MSI
attribute NC_GLOBAL people_2_person_name String Craig Carlson
attribute NC_GLOBAL people_2_person_nid String 50575
attribute NC_GLOBAL people_2_role String Co-Principal Investigator
attribute NC_GLOBAL people_2_role_type String originator
attribute NC_GLOBAL people_3_affiliation String University of California-Santa Barbara
attribute NC_GLOBAL people_3_affiliation_acronym String UCSB-MSI
attribute NC_GLOBAL people_3_person_name String Ms Anna James
attribute NC_GLOBAL people_3_person_nid String 471722
attribute NC_GLOBAL people_3_role String Student
attribute NC_GLOBAL people_3_role_type String related
attribute NC_GLOBAL people_4_affiliation String University of California-Santa Barbara
attribute NC_GLOBAL people_4_affiliation_acronym String UCSB-MSI
attribute NC_GLOBAL people_4_person_name String Dr Uta Passow
attribute NC_GLOBAL people_4_person_nid String 51317
attribute NC_GLOBAL people_4_role String Contact
attribute NC_GLOBAL people_4_role_type String related
attribute NC_GLOBAL people_5_affiliation String Woods Hole Oceanographic Institution
attribute NC_GLOBAL people_5_affiliation_acronym String WHOI BCO-DMO
attribute NC_GLOBAL people_5_person_name String Stephen R. Gegg
attribute NC_GLOBAL people_5_person_nid String 50910
attribute NC_GLOBAL people_5_role String BCO-DMO Data Manager
attribute NC_GLOBAL people_5_role_type String related
attribute NC_GLOBAL project String OA - Effects of High CO2
attribute NC_GLOBAL projects_0_acronym String OA - Effects of High CO2
attribute NC_GLOBAL projects_0_description String From the NSF Award Abstract
Coastal waters are already experiencing episodic exposure to carbonate conditions that were not expected until the end of the century making understanding the response to these episodic events as important as understanding the long-term mean response. Among the most striking examples are those associated with coastal upwelling along the west coast of the US, where the pH of surface waters may drop to 7.6 and pCO2 can reach 1100 uatm. Upwelling systems are responsible for a significant fraction of global carbon export making them prime targets for investigations on how ocean acidification is already affecting the biological pump today.
In this study, researchers at the University of California at Santa Barbara will investigate the potential effects of ocean acidification on the strength of the biological pump under the transient increases in CO2 experienced due to upwelling. Increases in CO2 are expected to alter the path and processing of carbon through marine food webs thereby strengthening the biological pump. Increases in inorganic carbon without proportional increases in nutrients result in carbon over-consumption by phytoplankton. How carbon over-consumption affects the strength of the biological pump will depend on the fate of the extra carbon that is either incorporated into phytoplankton cells forming particulate organic matter (POM), or is excreted as dissolved organic matter (DOM). Results from mesocosm experiments demonstrate that the mechanisms controlling the partitioning of fixed carbon between the particulate and dissolved phases, and the processing of those materials, are obscured when both processes operate simultaneously under natural or semi-natural conditions. Here, POM and DOM production and the heterotrophic processing of these materials will be separated experimentally across a range of CO2 concentrations by conducting basic laboratory culture experiments. In this way the mechanisms whereby elevated CO2 alters the flow of carbon along these paths can be elucidated and better understood for use in mechanistic forecasting models.
Broader Impacts- The need to understand the effects of ocean acidification for the future of society is clear. In addition to research education, both formal and informal, will be important for informing the public. Within this project 1-2 graduate students and 2-3 minority students will be recruited as interns from the CAMP program (California Alliance for Minority Participation). Within the 'Ocean to Classrooms' program run by outreach personnel from UCSB's Marine Science Institute an educational unit for K-12 students will be developed. Advice and support is also given to the Education Coordinator of NOAA, Channel Islands National Marine Sanctuary for the development of an education unit on ocean acidification.

PUBLICATIONS PRODUCED AS A RESULT OF THIS RESEARCH
Arnosti C, Grossart H-P, Muehling M, Joint I, Passow U. "Dynamics of extracellular enzyme activities in seawater under changed atmsopheric pCO2: A mesocosm investigation.," Aquatic Microbial Ecology, v.64, 2011, p. 285.
Passow U. "The Abiotic Formation of TEP under Ocean Acidification Scenarios.," Marine Chemistry, v.128-129, 2011, p. 72.
Passow, Uta; Carlson, Craig A.. "The biological pump in a high CO2 world," MARINE ECOLOGY PROGRESS SERIES, v.470, 2012, p. 249-271.
Gaerdes, Astrid; Ramaye, Yannic; Grossart, Hans-Peter; Passow, Uta; Ullrich, Matthias S.. "Effects of Marinobacter adhaerens HP15 on polymer exudation by Thalassiosira weissflogii at different N:P ratios," MARINE ECOLOGY PROGRESS SERIES, v.461, 2012, p. 1-14.
Philip Boyd, Tatiana Rynearson, Evelyn Armstrong, Feixue Fu, Kendra Hayashi, Zhangi Hu, David Hutchins, Raphe Kudela, Elena Litchman, Margaret Mulholland, Uta Passow, Robert Strzepek, Kerry Whittaker, Elizabeth Yu, Mridul Thomas. "Marine Phytoplankton Temperature versus Growth Responses from Polar to Tropical Waters - Outcome of a Scientific Community-Wide Study," PLOS One 8, v.8, 2013, p. e63091.
Arnosti, C., B. M. Fuchs, R. Amann, and U. Passow. "Contrasting extracellular enzyme activities of particle-associated bacteria from distinct provinces of the North Atlantic Ocean," Frontiers in Microbiology, v.3, 2012, p. 1.
Koch, B.P., Kattner, G., Witt, M., Passow, U., 2014. Molecular insights into the microbial formation of marine dissolved organic matter: recalcitrant or labile? Biogeosciences Discuss. 11 (2), 3065-3111.
Taucher, J., Brzezinski, M., Carlson, C., James, A., Jones, J., Passow, U., Riebesell, U., submitted. Effects of warming and elevated pCO2 on carbon uptake and partitioning of the marine diatoms Thalassiosira weissflogii and Dactyliosolen fragilissimus. Limnology and Oceanography
attribute NC_GLOBAL projects_0_end_date String 2014-09
attribute NC_GLOBAL projects_0_geolocation String Passow Lab, Marine Science Institute, University of California Santa Barbara
attribute NC_GLOBAL projects_0_name String Will high CO2 conditions affect production, partitioning and fate of organic matter?
attribute NC_GLOBAL projects_0_project_nid String 2284
attribute NC_GLOBAL projects_0_project_website String http://www.msi.ucsb.edu/people/research-scientists/uta-passow (external link)
attribute NC_GLOBAL projects_0_start_date String 2010-10
attribute NC_GLOBAL publisher_name String Biological and Chemical Oceanographic Data Management Office (BCO-DMO)
attribute NC_GLOBAL publisher_type String institution
attribute NC_GLOBAL sourceUrl String (local files)
attribute NC_GLOBAL Southernmost_Northing double 34.4126
attribute NC_GLOBAL standard_name_vocabulary String CF Standard Name Table v55
attribute NC_GLOBAL subsetVariables String Lab_Id,latitude,longitude
attribute NC_GLOBAL summary String Bioavailability of dissolved organic carbon produced by Dactyliosolen fragilissimus grown under different pCO2 and temperature condition from UCSB Marine Science Institute Passow Lab from 2009 to 2010.
attribute NC_GLOBAL title String 2B: Bioavailability of dissolved organic carbon produced by Dactyliosolen fragilissimus grown under different pCO2 and temperature condition from UCSB Marine Science Institute Passow Lab from 2009 to 2010 (OA - Effects of High CO2 project)
attribute NC_GLOBAL version String 1
attribute NC_GLOBAL Westernmost_Easting double -119.842
attribute NC_GLOBAL xml_source String osprey2erddap.update_xml() v1.3
variable Lab_Id   String  
attribute Lab_Id bcodmo_name String laboratory
attribute Lab_Id description String Lab Id – Lab identifier where experiments were conducted
attribute Lab_Id long_name String Lab Id
attribute Lab_Id units String text
variable latitude   double  
attribute latitude _CoordinateAxisType String Lat
attribute latitude _FillValue double NaN
attribute latitude actual_range double 34.4126, 34.4126
attribute latitude axis String Y
attribute latitude bcodmo_name String latitude
attribute latitude colorBarMaximum double 90.0
attribute latitude colorBarMinimum double -90.0
attribute latitude description String Approximate Latitude Position of Lab; South is negative
attribute latitude ioos_category String Location
attribute latitude long_name String Latitude
attribute latitude nerc_identifier String https://vocab.nerc.ac.uk/collection/P09/current/LATX/ (external link)
attribute latitude standard_name String latitude
attribute latitude units String degrees_north
variable longitude   double  
attribute longitude _CoordinateAxisType String Lon
attribute longitude _FillValue double NaN
attribute longitude actual_range double -119.842, -119.842
attribute longitude axis String X
attribute longitude bcodmo_name String longitude
attribute longitude colorBarMaximum double 180.0
attribute longitude colorBarMinimum double -180.0
attribute longitude description String Approximate Longitude Position of Lab; West is negative
attribute longitude ioos_category String Location
attribute longitude long_name String Longitude
attribute longitude nerc_identifier String https://vocab.nerc.ac.uk/collection/P09/current/LONX/ (external link)
attribute longitude standard_name String longitude
attribute longitude units String degrees_east
variable Bottle_Num   String  
attribute Bottle_Num bcodmo_name String sample
attribute Bottle_Num description String PC bottle number sampled
attribute Bottle_Num long_name String Bottle Num
attribute Bottle_Num nerc_identifier String https://vocab.nerc.ac.uk/collection/P02/current/ACYC/ (external link)
attribute Bottle_Num units String dimensionless
variable Temp   byte  
attribute Temp _FillValue byte 127
attribute Temp actual_range byte 15, 20
attribute Temp bcodmo_name String temperature
attribute Temp description String Temperature
attribute Temp long_name String Temperature
attribute Temp nerc_identifier String https://vocab.nerc.ac.uk/collection/P01/current/TEMPP901/ (external link)
attribute Temp units String degrees C
variable pCO2   short  
attribute pCO2 _FillValue short 32767
attribute pCO2 actual_range short 40, 1000
attribute pCO2 bcodmo_name String pCO2
attribute pCO2 description String pCO2 conditions
attribute pCO2 long_name String P CO2
attribute pCO2 nerc_identifier String https://vocab.nerc.ac.uk/collection/P01/current/PCO2C101/ (external link)
attribute pCO2 units String ppm
variable days_post_nut_depletion   byte  
attribute days_post_nut_depletion _FillValue byte 127
attribute days_post_nut_depletion actual_range byte 2, 6
attribute days_post_nut_depletion bcodmo_name String days
attribute days_post_nut_depletion description String Days post nut depletion
attribute days_post_nut_depletion long_name String Days Post Nut Depletion
attribute days_post_nut_depletion units String days
variable DOC_T0_0   float  
attribute DOC_T0_0 _FillValue float NaN
attribute DOC_T0_0 actual_range float 78.12, 186.43
attribute DOC_T0_0 bcodmo_name String DOC
attribute DOC_T0_0 description String Dissolved Organic Carbon at T0 (0 hrs)
attribute DOC_T0_0 long_name String DOC T0 0
attribute DOC_T0_0 nerc_identifier String https://vocab.nerc.ac.uk/collection/P01/current/CORGZZZX/ (external link)
attribute DOC_T0_0 units String uM C
variable DOC_T0_0_St_dev   float  
attribute DOC_T0_0_St_dev _FillValue float NaN
attribute DOC_T0_0_St_dev actual_range float 0.0, 2.01
attribute DOC_T0_0_St_dev bcodmo_name String DOC
attribute DOC_T0_0_St_dev description String Std Dev of Dissolved Organic Carbon at T0 (0 hrs)
attribute DOC_T0_0_St_dev long_name String DOC T0 0 St Dev
attribute DOC_T0_0_St_dev nerc_identifier String https://vocab.nerc.ac.uk/collection/P01/current/CORGZZZX/ (external link)
attribute DOC_T0_0_St_dev units String uM C
variable DOC_T3_73point5   float  
attribute DOC_T3_73point5 _FillValue float NaN
attribute DOC_T3_73point5 actual_range float 73.74, 170.58
attribute DOC_T3_73point5 bcodmo_name String DOC
attribute DOC_T3_73point5 description String Dissolved Organic Carbon at T3 (73.5 hrs)
attribute DOC_T3_73point5 long_name String DOC T3 73point5
attribute DOC_T3_73point5 nerc_identifier String https://vocab.nerc.ac.uk/collection/P01/current/CORGZZZX/ (external link)
attribute DOC_T3_73point5 units String uM C
variable DOC_T3_73point5_St_dev   float  
attribute DOC_T3_73point5_St_dev _FillValue float NaN
attribute DOC_T3_73point5_St_dev actual_range float 0.0, 3.39
attribute DOC_T3_73point5_St_dev bcodmo_name String DOC
attribute DOC_T3_73point5_St_dev description String Std Dev of Dissolved Organic Carbon at T3 (73.5 hrs)
attribute DOC_T3_73point5_St_dev long_name String DOC T3 73point5 St Dev
attribute DOC_T3_73point5_St_dev nerc_identifier String https://vocab.nerc.ac.uk/collection/P01/current/CORGZZZX/ (external link)
attribute DOC_T3_73point5_St_dev units String uM C
variable DOC_T8_196point25   float  
attribute DOC_T8_196point25 _FillValue float NaN
attribute DOC_T8_196point25 actual_range float 73.26, 147.29
attribute DOC_T8_196point25 bcodmo_name String DOC
attribute DOC_T8_196point25 description String Dissolved Organic Carbon at T8 (196.25 hrs)
attribute DOC_T8_196point25 long_name String DOC T8 196point25
attribute DOC_T8_196point25 nerc_identifier String https://vocab.nerc.ac.uk/collection/P01/current/CORGZZZX/ (external link)
attribute DOC_T8_196point25 units String uM C
variable DOC_T8_196point25_St_dev   float  
attribute DOC_T8_196point25_St_dev _FillValue float NaN
attribute DOC_T8_196point25_St_dev actual_range float 0.04, 3.63
attribute DOC_T8_196point25_St_dev bcodmo_name String DOC
attribute DOC_T8_196point25_St_dev description String Std Dev of Dissolved Organic Carbon at T8 (196.25 hrs)
attribute DOC_T8_196point25_St_dev long_name String DOC T8 196point25 St Dev
attribute DOC_T8_196point25_St_dev nerc_identifier String https://vocab.nerc.ac.uk/collection/P01/current/CORGZZZX/ (external link)
attribute DOC_T8_196point25_St_dev units String uM C
variable DOC_Tx_600   float  
attribute DOC_Tx_600 _FillValue float NaN
attribute DOC_Tx_600 actual_range float 70.32, 113.98
attribute DOC_Tx_600 bcodmo_name String DOC
attribute DOC_Tx_600 description String Dissolved Organic Carbon at Tx (600 hrs)
attribute DOC_Tx_600 long_name String DOC Tx 600
attribute DOC_Tx_600 nerc_identifier String https://vocab.nerc.ac.uk/collection/P01/current/CORGZZZX/ (external link)
attribute DOC_Tx_600 units String uM C
variable DOC_Tx_600_St_dev   float  
attribute DOC_Tx_600_St_dev _FillValue float NaN
attribute DOC_Tx_600_St_dev actual_range float 0.04, 3.85
attribute DOC_Tx_600_St_dev bcodmo_name String DOC
attribute DOC_Tx_600_St_dev description String Std Dev of Dissolved Organic Carbon at Tx (600 hrs)
attribute DOC_Tx_600_St_dev long_name String DOC Tx 600 St Dev
attribute DOC_Tx_600_St_dev nerc_identifier String https://vocab.nerc.ac.uk/collection/P01/current/CORGZZZX/ (external link)
attribute DOC_Tx_600_St_dev units String uM C

The information in the table above is also available in other file formats (.csv, .htmlTable, .itx, .json, .jsonlCSV1, .jsonlCSV, .jsonlKVP, .mat, .nc, .nccsv, .tsv, .xhtml) via a RESTful web service.


 
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