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Grid DAP Data | Sub- set | Table DAP Data | Make A Graph | W M S | Source Data Files | Acces- sible | Title | Sum- mary | FGDC, ISO, Metadata | Back- ground Info | RSS | E | Institution | Dataset ID |
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data | graph | files | public | [microzoo_epi_biomass] - Carbon biomass estimates of heterotrophic protists by size-class, based on epifluorescence microscopy from samples collected on R/V Melville cruise MV1008 in the Costa Rica Dome in 2010 (CRD FLUZiE project) (Costa Rica Dome FLUx and Zinc Experiments) | F I M | background | BCO-DMO | bcodmo_dataset_517455 |
Row Type | Variable Name | Attribute Name | Data Type | Value |
---|---|---|---|---|
attribute | NC_GLOBAL | access_formats | String | .htmlTable,.csv,.json,.mat,.nc,.tsv,.esriCsv,.geoJson |
attribute | NC_GLOBAL | acquisition_description | String | Seawater samples (500 mL) for microscopical analysis were gently collected from the CTD and immediately preserved for slide preparation according to a modified protocol of Sherr and Sherr (1993). The samples were first preserved with 260 uL of alkaline Lugol\u2019s solution, immediately followed by 10 mL of buffered formalin and 500 uL of sodium thiosulfate, with gentle mixing between each addition. Preserved samples were shielded from light and left to rest at room temperature for 1 h. After the rest period, 1 mL of proflavin (0.33% w/v) was added and the samples were stored in the dark for an additional hour. Just prior to filtration, the preserved samples were stained with 1 mL of DAPI (0.01 mg mL-1) and immediately transferred to the filtration manifold. A 50-mL aliquot (small volume, SV) of the sample was filtered through a 25-mm black polycarbonate filter with 0.8-um pore size, and the remaining 450 mL aliquot (large volume, LV) was filtered through a 25-mm black polycarbonate filter with 8.0-um pores. A 10-mm nylon backing filter was placed under all polycarbonate filters to promote even cell distribution, and filtered the samples under gentle vacuum pressure (<100 mm Hg). Each filter was then mounted onto glass slides with one drop of Type DF immersion oil and a No. 2 cover slip, and the prepared slides were frozen at -80\u00b0C for later analysis in the lab. NOTE: ciliated protists are poorly preserved by this method and are not included in these analyses. |
attribute | NC_GLOBAL | awards_0_award_nid | String | 515386 |
attribute | NC_GLOBAL | awards_0_award_number | String | OCE-0826626 |
attribute | NC_GLOBAL | awards_0_data_url | String | http://www.nsf.gov/awardsearch/showAward?AWD_ID=0826626 |
attribute | NC_GLOBAL | awards_0_funder_name | String | NSF Division of Ocean Sciences |
attribute | NC_GLOBAL | awards_0_funding_acronym | String | NSF OCE |
attribute | NC_GLOBAL | awards_0_funding_source_nid | String | 355 |
attribute | NC_GLOBAL | awards_0_program_manager | String | David L. Garrison |
attribute | NC_GLOBAL | awards_0_program_manager_nid | String | 50534 |
attribute | NC_GLOBAL | cdm_data_type | String | Other |
attribute | NC_GLOBAL | comment | String | Heterotrophic Protist Carbon Biomass (by epifluorescence microscopy) PI: Michael Landry (UCSD-SIO) Contact: Andrew Taylor (UCSD-SIO) Version: 24 June 2014 Note: size_class: lt2 = less than 2 um; gt20 = greater than 20 um. |
attribute | NC_GLOBAL | Conventions | String | COARDS, CF-1.6, ACDD-1.3 |
attribute | NC_GLOBAL | creator_email | String | info at bco-dmo.org |
attribute | NC_GLOBAL | creator_name | String | BCO-DMO |
attribute | NC_GLOBAL | creator_type | String | institution |
attribute | NC_GLOBAL | creator_url | String | https://www.bco-dmo.org/ |
attribute | NC_GLOBAL | data_source | String | extract_data_as_tsv version 2.3 19 Dec 2019 |
attribute | NC_GLOBAL | date_created | String | 2014-06-24T19:31:20Z |
attribute | NC_GLOBAL | date_modified | String | 2019-12-30T15:31:05Z |
attribute | NC_GLOBAL | defaultDataQuery | String | &time<now |
attribute | NC_GLOBAL | doi | String | 10.1575/1912/bco-dmo.517455.1 |
attribute | NC_GLOBAL | Easternmost_Easting | double | -89.99424 |
attribute | NC_GLOBAL | geospatial_lat_max | double | 10.29979 |
attribute | NC_GLOBAL | geospatial_lat_min | double | 8.39218 |
attribute | NC_GLOBAL | geospatial_lat_units | String | degrees_north |
attribute | NC_GLOBAL | geospatial_lon_max | double | -89.99424 |
attribute | NC_GLOBAL | geospatial_lon_min | double | -92.98714 |
attribute | NC_GLOBAL | geospatial_lon_units | String | degrees_east |
attribute | NC_GLOBAL | geospatial_vertical_max | double | 100.0 |
attribute | NC_GLOBAL | geospatial_vertical_min | double | 2.0 |
attribute | NC_GLOBAL | geospatial_vertical_positive | String | down |
attribute | NC_GLOBAL | geospatial_vertical_units | String | m |
attribute | NC_GLOBAL | infoUrl | String | https://www.bco-dmo.org/dataset/517455 |
attribute | NC_GLOBAL | institution | String | BCO-DMO |
attribute | NC_GLOBAL | instruments_0_acronym | String | camera |
attribute | NC_GLOBAL | instruments_0_dataset_instrument_description | String | Digital images were acquired with a Zeiss AxioCam MRc black and white 8-bit CCD camera. |
attribute | NC_GLOBAL | instruments_0_dataset_instrument_nid | String | 517462 |
attribute | NC_GLOBAL | instruments_0_description | String | All types of photographic equipment including stills, video, film and digital systems. |
attribute | NC_GLOBAL | instruments_0_instrument_external_identifier | String | https://vocab.nerc.ac.uk/collection/L05/current/311/ |
attribute | NC_GLOBAL | instruments_0_instrument_name | String | Camera |
attribute | NC_GLOBAL | instruments_0_instrument_nid | String | 520 |
attribute | NC_GLOBAL | instruments_0_supplied_name | String | Zeiss AxioCam MRc |
attribute | NC_GLOBAL | instruments_1_acronym | String | Inverted Microscope |
attribute | NC_GLOBAL | instruments_1_dataset_instrument_description | String | Slides were digitally imaged using a Zeiss Axiovert 200 M inverted compound microscope equipped for high-throughput epifluorescence microscopy with a motorized focus drive, stage, objective and filters. |
attribute | NC_GLOBAL | instruments_1_dataset_instrument_nid | String | 517463 |
attribute | NC_GLOBAL | instruments_1_description | String | An inverted microscope is a microscope with its light source and condenser on the top, above the stage pointing down, while the objectives and turret are below the stage pointing up. It was invented in 1850 by J. Lawrence Smith, a faculty member of Tulane University (then named the Medical College of Louisiana). Inverted microscopes are useful for observing living cells or organisms at the bottom of a large container (e.g. a tissue culture flask) under more natural conditions than on a glass slide, as is the case with a conventional microscope. Inverted microscopes are also used in micromanipulation applications where space above the specimen is required for manipulator mechanisms and the microtools they hold, and in metallurgical applications where polished samples can be placed on top of the stage and viewed from underneath using reflecting objectives. The stage on an inverted microscope is usually fixed, and focus is adjusted by moving the objective lens along a vertical axis to bring it closer to or further from the specimen. The focus mechanism typically has a dual concentric knob for coarse and fine adjustment. Depending on the size of the microscope, four to six objective lenses of different magnifications may be fitted to a rotating turret known as a nosepiece. These microscopes may also be fitted with accessories for fitting still and video cameras, fluorescence illumination, confocal scanning and many other applications. |
attribute | NC_GLOBAL | instruments_1_instrument_external_identifier | String | https://vocab.nerc.ac.uk/collection/L05/current/LAB05/ |
attribute | NC_GLOBAL | instruments_1_instrument_name | String | Inverted Microscope |
attribute | NC_GLOBAL | instruments_1_instrument_nid | String | 675 |
attribute | NC_GLOBAL | instruments_1_supplied_name | String | Zeiss Axiovert 200 M inverted compound microscope |
attribute | NC_GLOBAL | keywords | String | array, array-data, bco, bco-dmo, biological, biomass, cast, chemical, class, comprehensive, cycle, data, dataset, date, date_local, depth, dmo, erddap, event, large, latitude, local, longitude, management, niskin, oceanography, office, preliminary, size, size_class, stewardship, system, taxon |
attribute | NC_GLOBAL | license | String | https://www.bco-dmo.org/dataset/517455/license |
attribute | NC_GLOBAL | metadata_source | String | https://www.bco-dmo.org/api/dataset/517455 |
attribute | NC_GLOBAL | Northernmost_Northing | double | 10.29979 |
attribute | NC_GLOBAL | param_mapping | String | {'517455': {'lat': 'master - latitude', 'depth': 'flag - depth', 'lon': 'master - longitude'}} |
attribute | NC_GLOBAL | parameter_source | String | https://www.bco-dmo.org/mapserver/dataset/517455/parameters |
attribute | NC_GLOBAL | people_0_affiliation | String | University of California-San Diego |
attribute | NC_GLOBAL | people_0_affiliation_acronym | String | UCSD-SIO |
attribute | NC_GLOBAL | people_0_person_name | String | Michael R. Landry |
attribute | NC_GLOBAL | people_0_person_nid | String | 50545 |
attribute | NC_GLOBAL | people_0_role | String | Principal Investigator |
attribute | NC_GLOBAL | people_0_role_type | String | originator |
attribute | NC_GLOBAL | people_1_affiliation | String | University of California-San Diego |
attribute | NC_GLOBAL | people_1_affiliation_acronym | String | UCSD-SIO |
attribute | NC_GLOBAL | people_1_person_name | String | Andrew G. Taylor |
attribute | NC_GLOBAL | people_1_person_nid | String | 516476 |
attribute | NC_GLOBAL | people_1_role | String | Contact |
attribute | NC_GLOBAL | people_1_role_type | String | related |
attribute | NC_GLOBAL | people_2_affiliation | String | Woods Hole Oceanographic Institution |
attribute | NC_GLOBAL | people_2_affiliation_acronym | String | WHOI BCO-DMO |
attribute | NC_GLOBAL | people_2_person_name | String | Shannon Rauch |
attribute | NC_GLOBAL | people_2_person_nid | String | 51498 |
attribute | NC_GLOBAL | people_2_role | String | BCO-DMO Data Manager |
attribute | NC_GLOBAL | people_2_role_type | String | related |
attribute | NC_GLOBAL | project | String | CRD FLUZiE |
attribute | NC_GLOBAL | projects_0_acronym | String | CRD FLUZiE |
attribute | NC_GLOBAL | projects_0_description | String | Research was aimed at improved understanding of plankton dynamics, carbon and nutrient fluxes, and potential trace element limitation in the Costa Rica Dome region of the eastern tropical Pacific. The specific science objectives of the 2010 R/V Melville cruise (MV1008) were: 1) to assess grazing and trace metal/nutrient controls on primary production and phytoplankton standing stocks; 2) to quantify carbon and elemental fluxes and export rates from the euphotic zone; and 3) to measure microbial population, processes, stable isotope abundances associated with the OMZ and nitrite maxima. Additional information about MV1008 can be found in the cruise report (PDF). NOTE: The original proposal and award abstract are not relevant. The project was originally funded by NSF as experimental tests of phytoplankton controls in the Arabian Sea. Piracy concerns in the region led to the cancellation of the research cruise in 2009, and a Change of Scope request was approved to focus the project on related issues in the Costa Rica Dome (CRD). Though this project is not formally affiliated with any large program, it aligns with IMBER's emphasis on community ecology and biogeochemistry, and the OCB focus on carbon-based measurements of production, grazing and export processes. |
attribute | NC_GLOBAL | projects_0_end_date | String | 2013-12 |
attribute | NC_GLOBAL | projects_0_geolocation | String | Costa Rica Dome, Eastern Tropical Pacific Ocean |
attribute | NC_GLOBAL | projects_0_name | String | Costa Rica Dome FLUx and Zinc Experiments |
attribute | NC_GLOBAL | projects_0_project_nid | String | 515387 |
attribute | NC_GLOBAL | projects_0_start_date | String | 2009-01 |
attribute | NC_GLOBAL | publisher_name | String | Biological and Chemical Oceanographic Data Management Office (BCO-DMO) |
attribute | NC_GLOBAL | publisher_type | String | institution |
attribute | NC_GLOBAL | sourceUrl | String | (local files) |
attribute | NC_GLOBAL | Southernmost_Northing | double | 8.39218 |
attribute | NC_GLOBAL | standard_name_vocabulary | String | CF Standard Name Table v55 |
attribute | NC_GLOBAL | summary | String | Carbon biomass estimates of heterotrophic protists by size-class, based on epifluorescence microscopy. Samples were collected on the MV1008 cruise in the Costa Rica Dome (CRD) region of the Eastern Tropical Pacific Ocean. |
attribute | NC_GLOBAL | title | String | [microzoo_epi_biomass] - Carbon biomass estimates of heterotrophic protists by size-class, based on epifluorescence microscopy from samples collected on R/V Melville cruise MV1008 in the Costa Rica Dome in 2010 (CRD FLUZiE project) (Costa Rica Dome FLUx and Zinc Experiments) |
attribute | NC_GLOBAL | version | String | 1 |
attribute | NC_GLOBAL | Westernmost_Easting | double | -92.98714 |
attribute | NC_GLOBAL | xml_source | String | osprey2erddap.update_xml() v1.3 |
variable | event | short | ||
attribute | event | _FillValue | short | 32767 |
attribute | event | actual_range | short | 304, 950 |
attribute | event | bcodmo_name | String | event |
attribute | event | description | String | Number referring to the particular activity (event) on the FluZiE cruise. |
attribute | event | long_name | String | Event |
attribute | event | nerc_identifier | String | https://vocab.nerc.ac.uk/collection/P01/current/EVTAGFL/ |
attribute | event | units | String | integer |
variable | cast | byte | ||
attribute | cast | _FillValue | byte | 127 |
attribute | cast | actual_range | byte | 25, 70 |
attribute | cast | bcodmo_name | String | cast |
attribute | cast | description | String | CTD Cast number from the FluZiE cruise. |
attribute | cast | long_name | String | Cast |
attribute | cast | units | String | integer |
variable | cycle | String | ||
attribute | cycle | bcodmo_name | String | unknown |
attribute | cycle | description | String | Type and number of cruise sampling event. Either "Stn_n" or "Cycle_n". A transect of stations was sampled from 29 June to 03 July. Five quasi-Lagrangian experiments called "cycles" were conducted during the remainder of the cruise. |
attribute | cycle | long_name | String | Cycle |
attribute | cycle | units | String | text |
variable | date_local | String | ||
attribute | date_local | bcodmo_name | String | date |
attribute | date_local | description | String | Date of CTD cast (local time zone of UTC -6). in the format mmddyyyy |
attribute | date_local | long_name | String | Date Local |
attribute | date_local | nerc_identifier | String | https://vocab.nerc.ac.uk/collection/P01/current/ADATAA01/ |
attribute | date_local | units | String | unitless |
variable | latitude | double | ||
attribute | latitude | _CoordinateAxisType | String | Lat |
attribute | latitude | _FillValue | double | NaN |
attribute | latitude | actual_range | double | 8.39218, 10.29979 |
attribute | latitude | axis | String | Y |
attribute | latitude | bcodmo_name | String | latitude |
attribute | latitude | colorBarMaximum | double | 90.0 |
attribute | latitude | colorBarMinimum | double | -90.0 |
attribute | latitude | description | String | Latitude in degrees North. |
attribute | latitude | ioos_category | String | Location |
attribute | latitude | long_name | String | Latitude |
attribute | latitude | nerc_identifier | String | https://vocab.nerc.ac.uk/collection/P09/current/LATX/ |
attribute | latitude | standard_name | String | latitude |
attribute | latitude | units | String | degrees_north |
variable | longitude | double | ||
attribute | longitude | _CoordinateAxisType | String | Lon |
attribute | longitude | _FillValue | double | NaN |
attribute | longitude | actual_range | double | -92.98714, -89.99424 |
attribute | longitude | axis | String | X |
attribute | longitude | bcodmo_name | String | longitude |
attribute | longitude | colorBarMaximum | double | 180.0 |
attribute | longitude | colorBarMinimum | double | -180.0 |
attribute | longitude | description | String | Longitude in degrees East. |
attribute | longitude | ioos_category | String | Location |
attribute | longitude | long_name | String | Longitude |
attribute | longitude | nerc_identifier | String | https://vocab.nerc.ac.uk/collection/P09/current/LONX/ |
attribute | longitude | standard_name | String | longitude |
attribute | longitude | units | String | degrees_east |
variable | depth | double | ||
attribute | depth | _CoordinateAxisType | String | Height |
attribute | depth | _CoordinateZisPositive | String | down |
attribute | depth | _FillValue | double | NaN |
attribute | depth | actual_range | double | 2.0, 100.0 |
attribute | depth | axis | String | Z |
attribute | depth | bcodmo_name | String | depth |
attribute | depth | colorBarMaximum | double | 8000.0 |
attribute | depth | colorBarMinimum | double | -8000.0 |
attribute | depth | colorBarPalette | String | TopographyDepth |
attribute | depth | description | String | Sample depth. |
attribute | depth | ioos_category | String | Location |
attribute | depth | long_name | String | Depth |
attribute | depth | nerc_identifier | String | https://vocab.nerc.ac.uk/collection/P09/current/DEPH/ |
attribute | depth | positive | String | down |
attribute | depth | standard_name | String | depth |
attribute | depth | units | String | m |
variable | niskin | byte | ||
attribute | niskin | _FillValue | byte | 127 |
attribute | niskin | actual_range | byte | 1, 22 |
attribute | niskin | bcodmo_name | String | bot_Nis |
attribute | niskin | description | String | Niskin bottle that the sample was taken from. |
attribute | niskin | long_name | String | Niskin |
attribute | niskin | units | String | integer |
variable | taxon | String | ||
attribute | taxon | bcodmo_name | String | taxon |
attribute | taxon | description | String | Taxon. heterotrophic_dinos = Heterotrophic Dinoflagellates; heterotrophic_flags = Heterotrophic Flagellates; all = all taxonomic groups (heterotrophic dinoflagellates + heterotrophic flagellates) |
attribute | taxon | long_name | String | Taxon |
attribute | taxon | units | String | text |
variable | size_class | String | ||
attribute | size_class | bcodmo_name | String | unknown |
attribute | size_class | description | String | Size-Class Distribution (cell lengths are longest major axis): lt2 = cells < 2 um; 2_to_10 = cells 2-10 um; 10_to_20 = cells 10-20 um; gt20 = cells > 20 um; total = all sizes. |
attribute | size_class | long_name | String | Size Class |
attribute | size_class | units | String | micrometers (um) |
variable | biomass | float | ||
attribute | biomass | _FillValue | float | NaN |
attribute | biomass | actual_range | float | 0.0, 17.02 |
attribute | biomass | bcodmo_name | String | biomass_C |
attribute | biomass | description | String | Carbon biomass of the taxon size class. |
attribute | biomass | long_name | String | Biomass |
attribute | biomass | units | String | micrograms Carbon per liter (ug C L-1) |
The information in the table above is also available in other file formats (.csv, .htmlTable, .itx, .json, .jsonlCSV1, .jsonlCSV, .jsonlKVP, .mat, .nc, .nccsv, .tsv, .xhtml) via a RESTful web service.