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Title Sum-
Institution Dataset ID
   set  data   graph     files  public Biogeochemical and microbial field surveys from the BATS site, Bermuda from R/V Atlantic
Explorer cruises from 2009-2013 (Ocean Microbial Observatory project)
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The Dataset's Variables and Attributes

Row Type Variable Name Attribute Name Data Type Value
attribute NC_GLOBAL access_formats String .htmlTable,.csv,.json,.mat,.nc,.tsv,.esriCsv,.geoJson,.odvTxt
attribute NC_GLOBAL acquisition_description String Methods\u00a0References:
- Dissolved organic carbon method reference:\u00a0Carlson,\u00a0et al.
- Particulate organic carbon methodological references, calibrations,
precision and accuracy detailed at the UCSB MSI Analytical Lab Website:
- Bacterioplankton Abundance methodological reference:\u00a0Porter, K.G. and
Y.S. Feig (1980)
- Bacterial Production method reference:\u00a0Smith, D.C. and F. Azam
attribute NC_GLOBAL awards_0_award_nid String 514363
attribute NC_GLOBAL awards_0_award_number String OCE-0802004
attribute NC_GLOBAL awards_0_data_url String http://www.nsf.gov/awardsearch/showAward?AWD_ID=0802004 (external link)
attribute NC_GLOBAL awards_0_funder_name String NSF Division of Ocean Sciences
attribute NC_GLOBAL awards_0_funding_acronym String NSF OCE
attribute NC_GLOBAL awards_0_funding_source_nid String 355
attribute NC_GLOBAL awards_0_program_manager String David L. Garrison
attribute NC_GLOBAL awards_0_program_manager_nid String 50534
attribute NC_GLOBAL cdm_data_type String Other
attribute NC_GLOBAL comment String Biogeochemical and microbial field surveys
C. Carlson (UC-SB)
version date: 2020-05-04
attribute NC_GLOBAL Conventions String COARDS, CF-1.6, ACDD-1.3
attribute NC_GLOBAL creator_email String info at bco-dmo.org
attribute NC_GLOBAL creator_name String BCO-DMO
attribute NC_GLOBAL creator_type String institution
attribute NC_GLOBAL creator_url String https://www.bco-dmo.org/ (external link)
attribute NC_GLOBAL data_source String extract_data_as_tsv version 2.3 19 Dec 2019
attribute NC_GLOBAL dataset_current_state String Final and no updates
attribute NC_GLOBAL date_created String 2014-12-19T20:28:26Z
attribute NC_GLOBAL date_modified String 2020-05-11T19:08:52Z
attribute NC_GLOBAL defaultDataQuery String &time<now
attribute NC_GLOBAL doi String 10.26008/1912/bco-dmo.543314.1
attribute NC_GLOBAL Easternmost_Easting double -64.16473
attribute NC_GLOBAL geospatial_lat_max double 32.1829
attribute NC_GLOBAL geospatial_lat_min double 31.66381
attribute NC_GLOBAL geospatial_lat_units String degrees_north
attribute NC_GLOBAL geospatial_lon_max double -64.16473
attribute NC_GLOBAL geospatial_lon_min double -64.51155
attribute NC_GLOBAL geospatial_lon_units String degrees_east
attribute NC_GLOBAL geospatial_vertical_max double 2601.1
attribute NC_GLOBAL geospatial_vertical_min double -999.0
attribute NC_GLOBAL geospatial_vertical_positive String down
attribute NC_GLOBAL geospatial_vertical_units String m
attribute NC_GLOBAL infoUrl String https://www.bco-dmo.org/dataset/543314 (external link)
attribute NC_GLOBAL institution String BCO-DMO
attribute NC_GLOBAL instruments_0_acronym String Shimadzu TOC-V
attribute NC_GLOBAL instruments_0_dataset_instrument_description String Shimadzu TOC-V, used to measure DOC
attribute NC_GLOBAL instruments_0_dataset_instrument_nid String 551058
attribute NC_GLOBAL instruments_0_description String A Shimadzu TOC-V Analyzer measures DOC by high temperature combustion method.
attribute NC_GLOBAL instruments_0_instrument_external_identifier String http://onto.nerc.ac.uk/CAST/124 (external link)
attribute NC_GLOBAL instruments_0_instrument_name String Shimadzu TOC-V Analyzer
attribute NC_GLOBAL instruments_0_instrument_nid String 603
attribute NC_GLOBAL instruments_0_supplied_name String Shimadzu TOC-V
attribute NC_GLOBAL instruments_1_acronym String CHN_EA
attribute NC_GLOBAL instruments_1_dataset_instrument_description String CE440 Elemental Analyzer from Control Equipment Corp. (now Exeter Analytical) - for POC measurements
attribute NC_GLOBAL instruments_1_dataset_instrument_nid String 554362
attribute NC_GLOBAL instruments_1_description String A CHN Elemental Analyzer is used for the determination of carbon, hydrogen, and nitrogen content in organic and other types of materials, including solids, liquids, volatile, and viscous samples.
attribute NC_GLOBAL instruments_1_instrument_name String CHN Elemental Analyzer
attribute NC_GLOBAL instruments_1_instrument_nid String 625
attribute NC_GLOBAL instruments_1_supplied_name String CHN Elemental Analyzer
attribute NC_GLOBAL instruments_2_dataset_instrument_description String for measuring bacterioplankton abundance
attribute NC_GLOBAL instruments_2_dataset_instrument_nid String 551057
attribute NC_GLOBAL instruments_2_description String Instruments that generate enlarged images of samples using the phenomena of fluorescence and phosphorescence instead of, or in addition to, reflection and absorption of visible light. Includes conventional and inverted instruments.
attribute NC_GLOBAL instruments_2_instrument_external_identifier String https://vocab.nerc.ac.uk/collection/L05/current/LAB06/ (external link)
attribute NC_GLOBAL instruments_2_instrument_name String Microscope-Fluorescence
attribute NC_GLOBAL instruments_2_instrument_nid String 695
attribute NC_GLOBAL keywords String abund, bact, bact_abund, bact_abund_stdev, bco, bco-dmo, biological, carbon, cast, cast_type, chemical, commerce, cruise, cruise_id, cruise_id2, data, dataset, date, department, depth, depth_n, deviation, dmo, doc, DOC_stdev, erddap, id2, incorp, iso, ISO_DateTime_UTC, latitude, leu, leu_sd, leuc, leuc_incorp, longitude, management, oceanography, office, organic, particulate, POC, preliminary, sample, standard, standard deviation, station, stdev, thy, thy_incorp, thy_sd, time, type
attribute NC_GLOBAL license String https://www.bco-dmo.org/dataset/543314/license (external link)
attribute NC_GLOBAL metadata_source String https://www.bco-dmo.org/api/dataset/543314 (external link)
attribute NC_GLOBAL Northernmost_Northing double 32.1829
attribute NC_GLOBAL param_mapping String {'543314': {'lat': 'master - latitude', 'depth': 'master - depth', 'lon': 'master - longitude', 'ISO_DateTime_UTC': 'flag - time'}}
attribute NC_GLOBAL parameter_source String https://www.bco-dmo.org/mapserver/dataset/543314/parameters (external link)
attribute NC_GLOBAL people_0_affiliation String University of California-Santa Barbara
attribute NC_GLOBAL people_0_affiliation_acronym String UCSB
attribute NC_GLOBAL people_0_person_name String Craig Carlson
attribute NC_GLOBAL people_0_person_nid String 50575
attribute NC_GLOBAL people_0_role String Principal Investigator
attribute NC_GLOBAL people_0_role_type String originator
attribute NC_GLOBAL people_1_affiliation String Oregon State University
attribute NC_GLOBAL people_1_affiliation_acronym String OSU
attribute NC_GLOBAL people_1_person_name String Dr Stephen Giovannoni
attribute NC_GLOBAL people_1_person_nid String 514364
attribute NC_GLOBAL people_1_role String Co-Principal Investigator
attribute NC_GLOBAL people_1_role_type String originator
attribute NC_GLOBAL people_2_affiliation String Woods Hole Oceanographic Institution
attribute NC_GLOBAL people_2_affiliation_acronym String WHOI BCO-DMO
attribute NC_GLOBAL people_2_person_name String Nancy Copley
attribute NC_GLOBAL people_2_person_nid String 50396
attribute NC_GLOBAL people_2_role String BCO-DMO Data Manager
attribute NC_GLOBAL people_2_role_type String related
attribute NC_GLOBAL project String Ocean Microbial Observatory
attribute NC_GLOBAL projects_0_acronym String Ocean Microbial Observatory
attribute NC_GLOBAL projects_0_description String (Adapted from the NSF award abstract)
The premise of this project is that stratified bacterioplankton clades engage in specialized biogeochemical activities that can be identified by integrated oceanographic and microbiological approaches. Specifically, the objective of this project is to assess if the mesopelagic microbial community rely on diagenetically altered organic matter and subcellular fragments that are produced by microbial processes in the euphotic zone and delivered into the upper mesopelagic by sinking or mixing. In past efforts this microbial observatory had greater success cultivating members of the euphotic zone microbial community, and revealed an unanticipated growth requirement for reduced sulfur compounds in alphaproteobacteria of the SAR11 clade. Genomic information showed that intense competition for substrates imposes trade-offs on bacterioplankton - there are regions of N dimensional nutrient space where specialists win. We postulate that specific growth requirements may explain some the regular spatial and temporal patterns that have been observed in upper mesopelagic bacterioplankton communities, and the difficulties of culturing some of these organisms.
The specific objectives of this project are: 1) to produce 13C and 15N labeled subcellular (e.g., soluble, cell wall, and membrane) and DOM fractions from photosynthetic plankton cultures and use stable isotope probing to identify specific clades in the surface and upper mesopelagic microbial community that assimilate fractions of varying composition and lability. 2) to use fluorescence in situ hybridization approaches to monitor temporal and spatial variability of specific microbial populations identified from the SIP and HTC experiments. To increase resolution we will use CARD-FISH protocols. 3) to measure the proteomes of bacterioplankton communities to identify highly translated genes in the surface layer and upper mesopelagic, and community responses to seasonal nutrient limitation. 4) and, to cultivate these organisms via high throughput culturing (HTC) by pursuing the hypothesis that they require specific nutrient factors and/or diagenetically altered organic substrates. Complete genome sequences from key organisms will be sought and used as queries to study patterns of natural variation in genes and populations that have been associated with biogeochemically important functions.
attribute NC_GLOBAL projects_0_end_date String 2014-07
attribute NC_GLOBAL projects_0_geolocation String Bermuda Atlantic Time-Series study site
attribute NC_GLOBAL projects_0_name String Transitions in the Surface Layer and the Role of Vertically Stratified Microbial Communities in the Carbon Cycle - An Oceanic Microbial Observatory
attribute NC_GLOBAL projects_0_project_nid String 514365
attribute NC_GLOBAL projects_0_project_website String http://www.bios.edu/research/projects/oceanic-microbial-observatory/ (external link)
attribute NC_GLOBAL projects_0_start_date String 2008-08
attribute NC_GLOBAL publisher_name String Biological and Chemical Oceanographic Data Management Office (BCO-DMO)
attribute NC_GLOBAL publisher_type String institution
attribute NC_GLOBAL sourceUrl String (local files)
attribute NC_GLOBAL Southernmost_Northing double 31.66381
attribute NC_GLOBAL standard_name_vocabulary String CF Standard Name Table v55
attribute NC_GLOBAL subsetVariables String cast_type
attribute NC_GLOBAL summary String Biogeochemical and microbial field surveys from the BATS site, Bermuda from R/V Atlantic Explorer cruises from 2009-2013. This dataset includes water samples collected from 2009-2013 at the Bermuda Hydrostation that were analyzed for DOC, POC, bacterial abundance, leucine, and thymidine incorporation.
attribute NC_GLOBAL time_coverage_end String 2013-06-24T20:00:00Z
attribute NC_GLOBAL time_coverage_start String 2009-06-18T15:35:00Z
attribute NC_GLOBAL title String Biogeochemical and microbial field surveys from the BATS site, Bermuda from R/V Atlantic Explorer cruises from 2009-2013 (Ocean Microbial Observatory project)
attribute NC_GLOBAL version String 1
attribute NC_GLOBAL Westernmost_Easting double -64.51155
attribute NC_GLOBAL xml_source String osprey2erddap.update_xml() v1.5
variable cruise_id   String  
attribute cruise_id bcodmo_name String cruise_id
attribute cruise_id description String UNOLS cruise identification
attribute cruise_id long_name String Cruise Id
attribute cruise_id units String unitless
variable cruise_id2   String  
attribute cruise_id2 bcodmo_name String cruise_id
attribute cruise_id2 description String alternate cruise id
attribute cruise_id2 long_name String Cruise Id2
attribute cruise_id2 units String unitless
variable time   double  
attribute time _CoordinateAxisType String Time
attribute time actual_range double 1.2453393E9, 1.372104E9
attribute time axis String T
attribute time bcodmo_name String ISO_DateTime_UTC
attribute time description String date and time at start of cast [UTC], formatted as yyyymmddThh:mm
attribute time ioos_category String Time
attribute time long_name String ISO Date Time UTC
attribute time nerc_identifier String https://vocab.nerc.ac.uk/collection/P01/current/DTUT8601/ (external link)
attribute time standard_name String time
attribute time time_origin String 01-JAN-1970 00:00:00
attribute time units String seconds since 1970-01-01T00:00:00Z
variable station   String  
attribute station bcodmo_name String station
attribute station description String station label. HS = Hydrostation "S"
attribute station long_name String Station
attribute station units String unitless
variable latitude   double  
attribute latitude _CoordinateAxisType String Lat
attribute latitude _FillValue double NaN
attribute latitude actual_range double 31.66381, 32.1829
attribute latitude axis String Y
attribute latitude bcodmo_name String latitude
attribute latitude colorBarMaximum double 90.0
attribute latitude colorBarMinimum double -90.0
attribute latitude description String Latitude at start of cast; north is positive
attribute latitude ioos_category String Location
attribute latitude long_name String Latitude
attribute latitude nerc_identifier String https://vocab.nerc.ac.uk/collection/P09/current/LATX/ (external link)
attribute latitude standard_name String latitude
attribute latitude units String degrees_north
variable longitude   double  
attribute longitude _CoordinateAxisType String Lon
attribute longitude _FillValue double NaN
attribute longitude actual_range double -64.51155, -64.16473
attribute longitude axis String X
attribute longitude bcodmo_name String longitude
attribute longitude colorBarMaximum double 180.0
attribute longitude colorBarMinimum double -180.0
attribute longitude description String Longitude at start of cast; east is positive
attribute longitude ioos_category String Location
attribute longitude long_name String Longitude
attribute longitude nerc_identifier String https://vocab.nerc.ac.uk/collection/P09/current/LONX/ (external link)
attribute longitude standard_name String longitude
attribute longitude units String degrees_east
variable cast_type   String  
attribute cast_type bcodmo_name String cast_type
attribute cast_type description String cast type; B for bottle
attribute cast_type long_name String Cast Type
attribute cast_type units String unitless
variable cast   byte  
attribute cast _FillValue byte 127
attribute cast actual_range byte 1, 9
attribute cast bcodmo_name String cast
attribute cast description String unique Identified Code for each cast
attribute cast long_name String Cast
attribute cast units String unitless
variable sample   String  
attribute sample bcodmo_name String sample
attribute sample description String rosette bottle number
attribute sample long_name String Sample
attribute sample nerc_identifier String https://vocab.nerc.ac.uk/collection/P02/current/ACYC/ (external link)
attribute sample units String unitless
variable depth_n   short  
attribute depth_n _FillValue short 32767
attribute depth_n actual_range short 0, 2600
attribute depth_n bcodmo_name String depth_n
attribute depth_n colorBarMaximum double 8000.0
attribute depth_n colorBarMinimum double -8000.0
attribute depth_n colorBarPalette String TopographyDepth
attribute depth_n description String Bottle target depth
attribute depth_n long_name String Depth
attribute depth_n standard_name String depth
attribute depth_n units String meters
variable depth   double  
attribute depth _CoordinateAxisType String Height
attribute depth _CoordinateZisPositive String down
attribute depth _FillValue double NaN
attribute depth actual_range double -999.0, 2601.1
attribute depth axis String Z
attribute depth bcodmo_name String depth
attribute depth colorBarMaximum double 8000.0
attribute depth colorBarMinimum double -8000.0
attribute depth colorBarPalette String TopographyDepth
attribute depth description String CTD Depth in meters
attribute depth ioos_category String Location
attribute depth long_name String Depth
attribute depth nerc_identifier String https://vocab.nerc.ac.uk/collection/P09/current/DEPH/ (external link)
attribute depth positive String down
attribute depth standard_name String depth
attribute depth units String m
variable DOC   float  
attribute DOC _FillValue float NaN
attribute DOC actual_range float -999.0, 74.2
attribute DOC bcodmo_name String DOC
attribute DOC description String Dissolved organic carbon concentration by HTCO. Glass fiber filtrate type GF/F (Whatman). Methodological reference is Carlson et al. 2010 DSRII
attribute DOC long_name String DOC
attribute DOC nerc_identifier String https://vocab.nerc.ac.uk/collection/P01/current/CORGZZZX/ (external link)
attribute DOC units String micromoles per liter
variable DOC_stdev   float  
attribute DOC_stdev _FillValue float NaN
attribute DOC_stdev actual_range float -999.0, 3.8
attribute DOC_stdev bcodmo_name String standard deviation
attribute DOC_stdev description String standard deviation for DOC
attribute DOC_stdev long_name String DOC Stdev
attribute DOC_stdev units String umol/L
variable POC   float  
attribute POC _FillValue float NaN
attribute POC actual_range float -999.0, 5.87
attribute POC bcodmo_name String POC
attribute POC description String Particulate organic carbon measured by combustion analysis (CEC 440HA). Collected on Glass fiber filter type GF/F (Whatman).
attribute POC long_name String Particulate Organic Carbon
attribute POC nerc_identifier String https://vocab.nerc.ac.uk/collection/P01/current/CORGCAP1/ (external link)
attribute POC units String umol/L
variable bact_abund   float  
attribute bact_abund _FillValue float NaN
attribute bact_abund actual_range float -999.0, 14.58
attribute bact_abund bcodmo_name String bact_abundance
attribute bact_abund description String Bacterioplankton abundance by microscopy. Methodological reference: Porter, K.G. and Y.S. Feig (1980)
attribute bact_abund long_name String Bact Abund
attribute bact_abund nerc_identifier String https://vocab.nerc.ac.uk/collection/P02/current/BNTX (external link)
attribute bact_abund units String 10^8 cells/liter
variable bact_abund_stdev   float  
attribute bact_abund_stdev _FillValue float NaN
attribute bact_abund_stdev actual_range float -999.0, 2.01
attribute bact_abund_stdev bcodmo_name String standard deviation
attribute bact_abund_stdev description String standard deviation for bacterioplankton abundance
attribute bact_abund_stdev long_name String Bact Abund Stdev
attribute bact_abund_stdev units String 10^8 cells/liter
variable leuc_incorp   float  
attribute leuc_incorp _FillValue float NaN
attribute leuc_incorp actual_range float -999.0, 23.572
attribute leuc_incorp bcodmo_name String leuc_incorp
attribute leuc_incorp description String Heterotrophic bacterial production by 3H Leu uptake. Methodological reference: Smith DC, Azam F (1992)
attribute leuc_incorp long_name String Leuc Incorp
attribute leuc_incorp nerc_identifier String https://vocab.nerc.ac.uk/collection/P01/current/UPLERIP4/ (external link)
attribute leuc_incorp units String picomoles per liter per hour
variable leu_sd   float  
attribute leu_sd _FillValue float NaN
attribute leu_sd actual_range float -999.0, 2.67
attribute leu_sd bcodmo_name String leuc_sd
attribute leu_sd colorBarMaximum double 50.0
attribute leu_sd colorBarMinimum double 0.0
attribute leu_sd description String standard deviation for leucine incorporation
attribute leu_sd long_name String Leu Sd
attribute leu_sd nerc_identifier String https://vocab.nerc.ac.uk/collection/P01/current/SDLERIP4/ (external link)
attribute leu_sd units String picomoles per liter per hour
variable thy_incorp   float  
attribute thy_incorp _FillValue float NaN
attribute thy_incorp actual_range float -999.0, 1.865
attribute thy_incorp bcodmo_name String thy_incorp
attribute thy_incorp description String heterotrophic bacterial production by 3H Thymidine uptake
attribute thy_incorp long_name String Thy Incorp
attribute thy_incorp nerc_identifier String https://vocab.nerc.ac.uk/collection/P01/current/UPTHRIP4/ (external link)
attribute thy_incorp units String picomoles per liter per hour
variable thy_sd   float  
attribute thy_sd _FillValue float NaN
attribute thy_sd actual_range float -999.0, 0.34
attribute thy_sd bcodmo_name String thy_sd
attribute thy_sd colorBarMaximum double 50.0
attribute thy_sd colorBarMinimum double 0.0
attribute thy_sd description String standard deviation of heterotrophic bacterial production by 3H Thymidine uptake
attribute thy_sd long_name String THY SD
attribute thy_sd nerc_identifier String https://vocab.nerc.ac.uk/collection/P01/current/SDTHRIP4/ (external link)
attribute thy_sd units String picomoles per liter per hour

The information in the table above is also available in other file formats (.csv, .htmlTable, .itx, .json, .jsonlCSV1, .jsonlCSV, .jsonlKVP, .mat, .nc, .nccsv, .tsv, .xhtml) via a RESTful web service.

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