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Title Sum-
RSS Institution Dataset ID
     data   graph     files  public Drill site locations from MPSV GREATSHIP MANISHA IODP-347 cruise in the Baltic Sea in
2013 (IODP-347 Microbial Quantification project)
   ?     I   M   background (external link) RSS BCO-DMO bcodmo_dataset_641342

The Dataset's Variables and Attributes

Row Type Variable Name Attribute Name Data Type Value
attribute NC_GLOBAL access_formats String .htmlTable,.csv,.json,.mat,.nc,.tsv,.esriCsv,.geoJson
attribute NC_GLOBAL acquisition_description String Data for sites downloaded from:
attribute NC_GLOBAL awards_0_award_nid String 639416
attribute NC_GLOBAL awards_0_award_number String OCE-1431598
attribute NC_GLOBAL awards_0_data_url String http://www.nsf.gov/awardsearch/showAward.do?AwardNumber=1431598 (external link)
attribute NC_GLOBAL awards_0_funder_name String NSF Division of Ocean Sciences
attribute NC_GLOBAL awards_0_funding_acronym String NSF OCE
attribute NC_GLOBAL awards_0_funding_source_nid String 355
attribute NC_GLOBAL awards_0_program_manager String Dr Thomas Janecek
attribute NC_GLOBAL awards_0_program_manager_nid String 511697
attribute NC_GLOBAL cdm_data_type String Other
attribute NC_GLOBAL comment String IODP-347 Sites
PIs: Lloyd, Steen
Version: 24 March 2016
attribute NC_GLOBAL Conventions String COARDS, CF-1.6, ACDD-1.3
attribute NC_GLOBAL creator_email String info at bco-dmo.org
attribute NC_GLOBAL creator_name String BCO-DMO
attribute NC_GLOBAL creator_type String institution
attribute NC_GLOBAL creator_url String https://www.bco-dmo.org/ (external link)
attribute NC_GLOBAL data_source String extract_data_as_tsv.pl v1.0
attribute NC_GLOBAL date_created String 2016-03-24T19:52:13Z
attribute NC_GLOBAL date_modified String 2017-04-05T20:44:57Z
attribute NC_GLOBAL defaultDataQuery String &time
attribute NC_GLOBAL doi String 10.1575/1912/bco-dmo.664687
attribute NC_GLOBAL Easternmost_Easting double 18.254467
attribute NC_GLOBAL geospatial_lat_max double 62.95596
attribute NC_GLOBAL geospatial_lat_min double 55.00475
attribute NC_GLOBAL geospatial_lat_units String degrees_north
attribute NC_GLOBAL geospatial_lon_max double 18.254467
attribute NC_GLOBAL geospatial_lon_min double 9.800483
attribute NC_GLOBAL geospatial_lon_units String degrees_east
attribute NC_GLOBAL geospatial_vertical_max double 437.1
attribute NC_GLOBAL geospatial_vertical_min double 23.1
attribute NC_GLOBAL geospatial_vertical_positive String down
attribute NC_GLOBAL geospatial_vertical_units String m
attribute NC_GLOBAL infoUrl String https://www.bco-dmo.org/dataset/641342 (external link)
attribute NC_GLOBAL institution String BCO-DMO
attribute NC_GLOBAL keywords String bco, bco-dmo, biological, chemical, data, dataset, date, depth, dmo, erddap, latitude, longitude, management, oceanography, office, preliminary, site, time
attribute NC_GLOBAL license String The data may be used and redistributed for free but is not intended
for legal use, since it may contain inaccuracies. Neither the data
Contributor, ERD, NOAA, nor the United States Government, nor any
of their employees or contractors, makes any warranty, express or
implied, including warranties of merchantability and fitness for a
particular purpose, or assumes any legal liability for the accuracy,
completeness, or usefulness, of this information.
attribute NC_GLOBAL metadata_source String https://www.bco-dmo.org/api/dataset/641342 (external link)
attribute NC_GLOBAL Northernmost_Northing double 62.95596
attribute NC_GLOBAL param_mapping String {'641342': {'Latitude': 'flag - latitude', 'Depth': 'flag - depth', 'Longitude': 'flag - longitude'}}
attribute NC_GLOBAL parameter_source String https://www.bco-dmo.org/mapserver/dataset/641342/parameters (external link)
attribute NC_GLOBAL people_0_affiliation String University of Tennessee Knoxville
attribute NC_GLOBAL people_0_affiliation_acronym String UTK
attribute NC_GLOBAL people_0_person_name String Dr Karen G. Lloyd
attribute NC_GLOBAL people_0_person_nid String 639420
attribute NC_GLOBAL people_0_role String Principal Investigator
attribute NC_GLOBAL people_0_role_type String originator
attribute NC_GLOBAL people_1_affiliation String University of Tennessee Knoxville
attribute NC_GLOBAL people_1_affiliation_acronym String UTK
attribute NC_GLOBAL people_1_person_name String Dr Andrew Steen
attribute NC_GLOBAL people_1_person_nid String 554160
attribute NC_GLOBAL people_1_role String Co-Principal Investigator
attribute NC_GLOBAL people_1_role_type String originator
attribute NC_GLOBAL people_2_affiliation String University of Tennessee Knoxville
attribute NC_GLOBAL people_2_affiliation_acronym String UTK
attribute NC_GLOBAL people_2_person_name String Dr Karen G. Lloyd
attribute NC_GLOBAL people_2_person_nid String 639420
attribute NC_GLOBAL people_2_role String Contact
attribute NC_GLOBAL people_2_role_type String related
attribute NC_GLOBAL people_3_affiliation String Woods Hole Oceanographic Institution
attribute NC_GLOBAL people_3_affiliation_acronym String WHOI BCO-DMO
attribute NC_GLOBAL people_3_person_name String Stephen R. Gegg
attribute NC_GLOBAL people_3_person_nid String 50910
attribute NC_GLOBAL people_3_role String BCO-DMO Data Manager
attribute NC_GLOBAL people_3_role_type String related
attribute NC_GLOBAL project String Quantifying the contribution of the deep biosphere in the marine sediment carbon cycle using deep-sea sediment cores from the Baltic Sea
attribute NC_GLOBAL projects_0_acronym String IODP-347 Microbial Quantification
attribute NC_GLOBAL projects_0_description String Marine sediments contain a microbial population large enough to rival that of Earth's oceans, but much about this vast community is unknown. Innovations in total cell counting methods have refined estimates of cell concentrations, but tell us nothing about specific taxa. Isotopic data provides evidence that a majority of subsurface microorganisms survive by breaking down organic matter, yet measurable links between specific microbial taxa and their organic matter substrates are untested. The proposed work overcomes these limitations, with a particular focus on the degradation of proteins and carbohydrates, which comprise the bulk of classifiable sedimentary organic matter. The project will link specific taxa to potential extracellular enzyme activity in the genomes of single microbial cells, apply newly-identified, optimal methods for counting viable cells belonging to specific taxa using catalyzed reporter deposition fluorescent in situ hybridization (CARD-FISH), and measure the potential activity of their enzymes in situ. The resulting data will provide key evidence about the strategies subsurface life uses to overcome extreme energy limitation and contribute to the long-term carbon cycle.
The Principal Investigators are employing novel,improved methods to quantify cells of specific taxa in the marine subsurface and to determine the biogeochemical functions of those uncultured taxa, including:
1) Determine the pathway of organic carbon degradation in single cell genomes of uncultured, numerically dominant subsurface microorganisms.
2) Quantify viable bacteria and archaea in the deep subsurface using an improvement on the existing technology of CARD-FISH.
3 )Measure the potential activities (Vmax values) of enzymes in deep Baltic Sea sediments, and use the abundances of enzyme-producing microorganisms to calculate depth profiles of cell-specific Vmax values.
The project combines these methods in order to identify and quantify the cells capable of degrading organic matter in deep sediments of the Baltic Sea, obtained from Integrated Ocean Drilling Program (IODP) expedition 347. These results will greatly expand our knowledge of the function and activity of uncultured microorganisms in the deep subsurface.
This project is associated with C-DEBI account number 157595.
attribute NC_GLOBAL projects_0_end_date String 2016-08
attribute NC_GLOBAL projects_0_geolocation String Baltic Sea
attribute NC_GLOBAL projects_0_name String Quantifying the contribution of the deep biosphere in the marine sediment carbon cycle using deep-sea sediment cores from the Baltic Sea
attribute NC_GLOBAL projects_0_project_nid String 639417
attribute NC_GLOBAL projects_0_start_date String 2014-09
attribute NC_GLOBAL publisher_name String Stephen R. Gegg
attribute NC_GLOBAL publisher_role String BCO-DMO Data Manager(s)
attribute NC_GLOBAL sourceUrl String (local files)
attribute NC_GLOBAL Southernmost_Northing double 55.00475
attribute NC_GLOBAL standard_name_vocabulary String CF Standard Name Table v29
attribute NC_GLOBAL summary String IODP-347 Drill Sites

Data for sites downloaded from:

Note: Drill site locations used for deployment locations table

[IODP-347 Expedition
attribute NC_GLOBAL title String Drill site locations from MPSV GREATSHIP MANISHA IODP-347 cruise in the Baltic Sea in 2013 (IODP-347 Microbial Quantification project)
attribute NC_GLOBAL version String 1
attribute NC_GLOBAL Westernmost_Easting double 9.800483
attribute NC_GLOBAL xml_source String osprey2erddap.update_xml() v1.0-alpha
variable Site   String  
attribute Site description String Site
attribute Site ioos_category String Unknown
attribute Site long_name String Site
attribute Site units String text
variable Date   int  
attribute Date _FillValue int 2147483647
attribute Date actual_range int 20130913, 20131030
attribute Date description String Date in�YYYYMMDD format
attribute Date ioos_category String Time
attribute Date long_name String Date
attribute Date units String unitless
variable latitude   double  
attribute latitude _CoordinateAxisType String Lat
attribute latitude _FillValue double NaN
attribute latitude actual_range double 55.00475, 62.95596
attribute latitude axis String Y
attribute latitude colorBarMaximum double 90.0
attribute latitude colorBarMinimum double -90.0
attribute latitude description String Latitude (South is negative)
attribute latitude ioos_category String Location
attribute latitude long_name String Latitude
attribute latitude standard_name String latitude
attribute latitude units String degrees_north
variable longitude   double  
attribute longitude _CoordinateAxisType String Lon
attribute longitude _FillValue double NaN
attribute longitude actual_range double 9.800483, 18.254467
attribute longitude axis String X
attribute longitude colorBarMaximum double 180.0
attribute longitude colorBarMinimum double -180.0
attribute longitude description String Longitude (West is negative)
attribute longitude ioos_category String Location
attribute longitude long_name String Longitude
attribute longitude standard_name String longitude
attribute longitude units String degrees_east
variable depth   double  
attribute depth _CoordinateAxisType String Height
attribute depth _CoordinateZisPositive String down
attribute depth _FillValue double NaN
attribute depth actual_range double 23.1, 437.1
attribute depth axis String Z
attribute depth colorBarMaximum double 8000.0
attribute depth colorBarMinimum double -8000.0
attribute depth colorBarPalette String TopographyDepth
attribute depth description String Water Depth
attribute depth ioos_category String Location
attribute depth long_name String Depth
attribute depth positive String down
attribute depth standard_name String depth
attribute depth units String m

The information in the table above is also available in other file formats (.csv, .htmlTable, .itx, .json, .jsonlCSV, .jsonlKVP, .mat, .nc, .nccsv, .tsv, .xhtml) via a RESTful web service.

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