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Grid DAP Data | Sub- set | Table DAP Data | Make A Graph | W M S | Source Data Files | Acces- sible | Title | Sum- mary | FGDC, ISO, Metadata | Back- ground Info | RSS | E | Institution | Dataset ID |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
data | graph | files | public | [Host-Symbiont respiration relationship] - Host-symbiont respiration related to symbiont density; anemones from Key Largo from (AnemoneOA project) (Ocean Acidification: Understanding the Impact of CO2 and Temperature on the Physiological, Genetic, and Epigenetic Response of a Model Sea Anemone System with Different Symbionts) | I M | background | BCO-DMO | bcodmo_dataset_649708 |
Row Type | Variable Name | Attribute Name | Data Type | Value |
---|---|---|---|---|
attribute | NC_GLOBAL | access_formats | String | .htmlTable,.csv,.json,.mat,.nc,.tsv |
attribute | NC_GLOBAL | acquisition_description | String | Full details of the experimental design are provided in Hawkins et al., 2016 |
attribute | NC_GLOBAL | awards_0_award_nid | String | 628966 |
attribute | NC_GLOBAL | awards_0_award_number | String | EF-1316055 |
attribute | NC_GLOBAL | awards_0_data_url | String | http://www.nsf.gov/awardsearch/showAward.do?AwardNumber=1316055 |
attribute | NC_GLOBAL | awards_0_funder_name | String | NSF Emerging Frontiers Division |
attribute | NC_GLOBAL | awards_0_funding_acronym | String | NSF EF |
attribute | NC_GLOBAL | awards_0_funding_source_nid | String | 392 |
attribute | NC_GLOBAL | awards_0_program_manager | String | Irwin Forseth |
attribute | NC_GLOBAL | awards_0_program_manager_nid | String | 520504 |
attribute | NC_GLOBAL | cdm_data_type | String | Other |
attribute | NC_GLOBAL | comment | String | Anemone host and symbiont respiration per symbiont density in laboratory setting Fresh anemones from Key Largo M. Warner, PI CS=Citrate Synthase Version 14 June 2016 |
attribute | NC_GLOBAL | Conventions | String | COARDS, CF-1.6, ACDD-1.3 |
attribute | NC_GLOBAL | creator_email | String | info at bco-dmo.org |
attribute | NC_GLOBAL | creator_name | String | BCO-DMO |
attribute | NC_GLOBAL | creator_type | String | institution |
attribute | NC_GLOBAL | creator_url | String | https://www.bco-dmo.org/ |
attribute | NC_GLOBAL | data_source | String | extract_data_as_tsv version 2.3 19 Dec 2019 |
attribute | NC_GLOBAL | date_created | String | 2016-06-17T14:55:35Z |
attribute | NC_GLOBAL | date_modified | String | 2019-07-02T15:44:44Z |
attribute | NC_GLOBAL | defaultDataQuery | String | &time<now |
attribute | NC_GLOBAL | doi | String | 10.1575/1912/bco-dmo.649708.1 |
attribute | NC_GLOBAL | infoUrl | String | https://www.bco-dmo.org/dataset/649708 |
attribute | NC_GLOBAL | institution | String | BCO-DMO |
attribute | NC_GLOBAL | instruments_0_dataset_instrument_description | String | Used to visualize cells' chlorophyll a fluorescence. [EVOS system, ThermoFisher (Life Technologies), Waltham, MA, USA; excitation: 628 ± 20 nm, emission: 692 ± 20 nm]. |
attribute | NC_GLOBAL | instruments_0_dataset_instrument_nid | String | 708840 |
attribute | NC_GLOBAL | instruments_0_description | String | Instruments that generate enlarged images of samples using the phenomena of fluorescence and phosphorescence instead of, or in addition to, reflection and absorption of visible light. Includes conventional and inverted instruments. |
attribute | NC_GLOBAL | instruments_0_instrument_external_identifier | String | https://vocab.nerc.ac.uk/collection/L05/current/LAB06/ |
attribute | NC_GLOBAL | instruments_0_instrument_name | String | Microscope-Fluorescence |
attribute | NC_GLOBAL | instruments_0_instrument_nid | String | 695 |
attribute | NC_GLOBAL | instruments_0_supplied_name | String | fluorescence microscope |
attribute | NC_GLOBAL | instruments_1_acronym | String | Hemocytometer |
attribute | NC_GLOBAL | instruments_1_dataset_instrument_description | String | Used along with fluorescence microscope to quantify microbial densities. |
attribute | NC_GLOBAL | instruments_1_dataset_instrument_nid | String | 708835 |
attribute | NC_GLOBAL | instruments_1_description | String | A hemocytometer is a small glass chamber, resembling a thick microscope slide, used for determining the number of cells per unit volume of a suspension. Originally used for performing blood cell counts, a hemocytometer can be used to count a variety of cell types in the laboratory. Also spelled as "haemocytometer". Description from: http://hlsweb.dmu.ac.uk/ahs/elearning/RITA/Haem1/Haem1.html. |
attribute | NC_GLOBAL | instruments_1_instrument_name | String | Hemocytometer |
attribute | NC_GLOBAL | instruments_1_instrument_nid | String | 704 |
attribute | NC_GLOBAL | instruments_1_supplied_name | String | Improved Neubauer hemocytometer |
attribute | NC_GLOBAL | instruments_2_acronym | String | Spectrophotometer |
attribute | NC_GLOBAL | instruments_2_dataset_instrument_description | String | ThermoFisher, Waltham, MA, USA |
attribute | NC_GLOBAL | instruments_2_dataset_instrument_nid | String | 708844 |
attribute | NC_GLOBAL | instruments_2_description | String | An instrument used to measure the relative absorption of electromagnetic radiation of different wavelengths in the near infra-red, visible and ultraviolet wavebands by samples. |
attribute | NC_GLOBAL | instruments_2_instrument_external_identifier | String | https://vocab.nerc.ac.uk/collection/L05/current/LAB20/ |
attribute | NC_GLOBAL | instruments_2_instrument_name | String | Spectrophotometer |
attribute | NC_GLOBAL | instruments_2_instrument_nid | String | 707 |
attribute | NC_GLOBAL | instruments_2_supplied_name | String | NanoDrop spectrophotometer |
attribute | NC_GLOBAL | instruments_3_dataset_instrument_description | String | an oxygen sensitive optode (Fibox 4, PreSens Gmbh, Regensburg, Germany). |
attribute | NC_GLOBAL | instruments_3_dataset_instrument_nid | String | 708834 |
attribute | NC_GLOBAL | instruments_3_description | String | An optode or optrode is an optical sensor device that optically measures a specific substance usually with the aid of a chemical transducer. |
attribute | NC_GLOBAL | instruments_3_instrument_name | String | Optode |
attribute | NC_GLOBAL | instruments_3_instrument_nid | String | 727 |
attribute | NC_GLOBAL | instruments_3_supplied_name | String | Oxygen sensitive optode |
attribute | NC_GLOBAL | instruments_4_acronym | String | Thermal Cycler |
attribute | NC_GLOBAL | instruments_4_dataset_instrument_description | String | AB-7500 real-time QPCR system [ThermoFisher (Applied Biosystems), Waltham, MA, USA], with the following cycling conditions: 94◦ C for 10 min, followed by 40 cycles of 94◦C for 15 s, 60◦C for 1 min, and 72◦C for 15 s. |
attribute | NC_GLOBAL | instruments_4_dataset_instrument_nid | String | 708845 |
attribute | NC_GLOBAL | instruments_4_description | String | General term for a laboratory apparatus commonly used for performing polymerase chain reaction (PCR). The device has a thermal block with holes where tubes with the PCR reaction mixtures can be inserted. The cycler then raises and lowers the temperature of the block in discrete, pre-programmed steps. (adapted from http://serc.carleton.edu/microbelife/research_methods/genomics/pcr.html) |
attribute | NC_GLOBAL | instruments_4_instrument_name | String | PCR Thermal Cycler |
attribute | NC_GLOBAL | instruments_4_instrument_nid | String | 471582 |
attribute | NC_GLOBAL | instruments_4_supplied_name | String | ThermoFisher QPCR system |
attribute | NC_GLOBAL | instruments_5_dataset_instrument_description | String | Measured baseline absorbance at 412nm. (Fluostar Omega, BMG, Cary, NC, USA) |
attribute | NC_GLOBAL | instruments_5_dataset_instrument_nid | String | 743373 |
attribute | NC_GLOBAL | instruments_5_description | String | Plate readers (also known as microplate readers) are laboratory instruments designed to detect biological, chemical or physical events of samples in microtiter plates. They are widely used in research, drug discovery, bioassay validation, quality control and manufacturing processes in the pharmaceutical and biotechnological industry and academic organizations. Sample reactions can be assayed in 6-1536 well format microtiter plates. The most common microplate format used in academic research laboratories or clinical diagnostic laboratories is 96-well (8 by 12 matrix) with a typical reaction volume between 100 and 200 uL per well. Higher density microplates (384- or 1536-well microplates) are typically used for screening applications, when throughput (number of samples per day processed) and assay cost per sample become critical parameters, with a typical assay volume between 5 and 50 µL per well. Common detection modes for microplate assays are absorbance, fluorescence intensity, luminescence, time-resolved fluorescence, and fluorescence polarization. From: https://en.wikipedia.org/wiki/Plate_reader, 2014-09-0-23. |
attribute | NC_GLOBAL | instruments_5_instrument_name | String | plate reader |
attribute | NC_GLOBAL | instruments_5_instrument_nid | String | 528693 |
attribute | NC_GLOBAL | instruments_5_supplied_name | String | microplate reader |
attribute | NC_GLOBAL | keywords | String | activity, anemone, at96, bco, bco-dmo, biological, biomass, chemical, co1, data, dataset, dens, dmo, dna, erddap, fraction, genome, genome_ratio_AT96, genome_ratio_CO1, genome_ratio_CO1_Pro, holobiont, holobiont_resp_total, host, host_CS_activity, host_CS_activity_product_total, host_DNA_total, host_symb_dens_normal, management, normal, oceanography, office, preliminary, pro, product, prot, prot_normal_resp, protein, ratio, resp, respir, sample, symb, symb_biomass_fraction, symb_CS_activity, symb_respir_fraction, total, total_anemone_CS_activity, total_host_protein |
attribute | NC_GLOBAL | license | String | https://www.bco-dmo.org/dataset/649708/license |
attribute | NC_GLOBAL | metadata_source | String | https://www.bco-dmo.org/api/dataset/649708 |
attribute | NC_GLOBAL | param_mapping | String | {'649708': {}} |
attribute | NC_GLOBAL | parameter_source | String | https://www.bco-dmo.org/mapserver/dataset/649708/parameters |
attribute | NC_GLOBAL | people_0_affiliation | String | University of Delaware |
attribute | NC_GLOBAL | people_0_person_name | String | Mark E. Warner |
attribute | NC_GLOBAL | people_0_person_nid | String | 51387 |
attribute | NC_GLOBAL | people_0_role | String | Principal Investigator |
attribute | NC_GLOBAL | people_0_role_type | String | originator |
attribute | NC_GLOBAL | people_1_affiliation | String | Woods Hole Oceanographic Institution |
attribute | NC_GLOBAL | people_1_affiliation_acronym | String | WHOI BCO-DMO |
attribute | NC_GLOBAL | people_1_person_name | String | Ms Dicky Allison |
attribute | NC_GLOBAL | people_1_person_nid | String | 50382 |
attribute | NC_GLOBAL | people_1_role | String | BCO-DMO Data Manager |
attribute | NC_GLOBAL | people_1_role_type | String | related |
attribute | NC_GLOBAL | project | String | AnemoneOA |
attribute | NC_GLOBAL | projects_0_acronym | String | AnemoneOA |
attribute | NC_GLOBAL | projects_0_description | String | The projected rise in carbon dioxide (CO2) in the atmosphere is considered a primary threat to marine systems throughout the world due to both ocean acidification and rising ocean temperatures. Coral reefs are very sensitive to these projected changes in the earth's climate, with continued losses in growth as well as disruption (also known as bleaching) in the symbiotic relationship between the algae (Symbiodinium) living within a diversity of host animals, including stony corals, soft corals and sea anemones. While much information has been gleaned as to how acidification may affect stony corals, considerably less is known about the interactive effects of acidification and temperature to other symbiotic anthozoans. To this end, this proposal will investigate the long-term impacts of elevated CO2 and temperature on the model sea anemone, Aiptasia pallida, while harboring four different genotypes of Symbiodinium. The primary goals of this project are (1) to determine the sensitivity and capacity for acclimation in molecular and physiological processes while exposed to elevated CO2 and temperature, and (2) to assess the degree to which acclimated adult animals may confer (or transfer) an imprinted physiological characteristic to the next generation of asexual offspring. A series of long-term experiments will be conducted with each animal/algal combination (holobiont) in order to collect initial (3 month) stress markers and genomic data and then follow animal response and asexual reproduction through several generations for one year. The possibility for enhanced resilience or acclimation will be measured by tracking the recovery of each holobiont, followed by repeated exposure to elevated temperature while held in high CO2. This project will tease apart fine scale mechanisms of stress, acclimation, or amelioration that may vary as a function of algal genotype and host animal response, and the degree to which environmental imprinting may pre-acclimate propagules. Project results will provide information regarding how future acidification and warming will affect cnidarian-algal symbioses, and the fundamental profile of their flexibility in stress response processes across organismal, metabolic, genomic and epigenetic scales. |
attribute | NC_GLOBAL | projects_0_end_date | String | 2016-06 |
attribute | NC_GLOBAL | projects_0_geolocation | String | Lewes, Delaware |
attribute | NC_GLOBAL | projects_0_name | String | Ocean Acidification: Understanding the Impact of CO2 and Temperature on the Physiological, Genetic, and Epigenetic Response of a Model Sea Anemone System with Different Symbionts |
attribute | NC_GLOBAL | projects_0_project_nid | String | 628967 |
attribute | NC_GLOBAL | projects_0_start_date | String | 2013-07 |
attribute | NC_GLOBAL | publisher_name | String | Biological and Chemical Oceanographic Data Management Office (BCO-DMO) |
attribute | NC_GLOBAL | publisher_type | String | institution |
attribute | NC_GLOBAL | sourceUrl | String | (local files) |
attribute | NC_GLOBAL | standard_name_vocabulary | String | CF Standard Name Table v55 |
attribute | NC_GLOBAL | summary | String | Host-symbiont respiration related to symbiont density; anemones from Key Largo from (AnemoneOA project) |
attribute | NC_GLOBAL | title | String | [Host-Symbiont respiration relationship] - Host-symbiont respiration related to symbiont density; anemones from Key Largo from (AnemoneOA project) (Ocean Acidification: Understanding the Impact of CO2 and Temperature on the Physiological, Genetic, and Epigenetic Response of a Model Sea Anemone System with Different Symbionts) |
attribute | NC_GLOBAL | version | String | 1 |
attribute | NC_GLOBAL | xml_source | String | osprey2erddap.update_xml() v1.3 |
variable | sample | String | ||
attribute | sample | bcodmo_name | String | sample |
attribute | sample | description | String | sample ID number |
attribute | sample | long_name | String | Sample |
attribute | sample | nerc_identifier | String | https://vocab.nerc.ac.uk/collection/P02/current/ACYC/ |
attribute | sample | units | String | unitless |
variable | holobiont_resp_total | float | ||
attribute | holobiont_resp_total | _FillValue | float | NaN |
attribute | holobiont_resp_total | actual_range | float | 0.2603, 1.6616 |
attribute | holobiont_resp_total | bcodmo_name | String | respiration |
attribute | holobiont_resp_total | description | String | total holobiont (anemone)respiration |
attribute | holobiont_resp_total | long_name | String | Holobiont Resp Total |
attribute | holobiont_resp_total | units | String | micromoles of oxygen per hour |
variable | prot_normal_resp | float | ||
attribute | prot_normal_resp | _FillValue | float | NaN |
attribute | prot_normal_resp | actual_range | float | 0.6121, 1.9819 |
attribute | prot_normal_resp | bcodmo_name | String | respiration |
attribute | prot_normal_resp | description | String | Host protein-normalised holobiont respiration |
attribute | prot_normal_resp | long_name | String | Prot Normal Resp |
attribute | prot_normal_resp | units | String | micromoles of oxygen per hour per milligram protein |
variable | host_CS_activity_product_total | float | ||
attribute | host_CS_activity_product_total | _FillValue | float | NaN |
attribute | host_CS_activity_product_total | actual_range | float | 0.014, 0.1088 |
attribute | host_CS_activity_product_total | bcodmo_name | String | metabolic_enzyme |
attribute | host_CS_activity_product_total | description | String | Total host citrate synthase activity; the product of host citrate synthase activity and total host protein |
attribute | host_CS_activity_product_total | long_name | String | Host CS Activity Product Total |
attribute | host_CS_activity_product_total | units | String | Units per milligram protein X milligrams |
variable | host_CS_activity | float | ||
attribute | host_CS_activity | _FillValue | float | NaN |
attribute | host_CS_activity | actual_range | float | 0.0343, 0.1794 |
attribute | host_CS_activity | bcodmo_name | String | metabolic_enzyme |
attribute | host_CS_activity | description | String | Host citrate synthase specific activity |
attribute | host_CS_activity | long_name | String | Host CS Activity |
attribute | host_CS_activity | units | String | units per milligram protein |
variable | total_host_protein | float | ||
attribute | total_host_protein | _FillValue | float | NaN |
attribute | total_host_protein | actual_range | float | 0.1369, 2.1751 |
attribute | total_host_protein | bcodmo_name | String | unknown |
attribute | total_host_protein | description | String | Total host protein |
attribute | total_host_protein | long_name | String | Total Host Protein |
attribute | total_host_protein | units | String | milligrams |
variable | symb_CS_activity | float | ||
attribute | symb_CS_activity | _FillValue | float | NaN |
attribute | symb_CS_activity | actual_range | float | 0.0334, 0.1677 |
attribute | symb_CS_activity | bcodmo_name | String | metabolic_enzyme |
attribute | symb_CS_activity | description | String | Symbiont citrate synthase specific activity |
attribute | symb_CS_activity | long_name | String | Symb CS Activity |
attribute | symb_CS_activity | units | String | Units per milligram protein |
variable | total_anemone_CS_activity | float | ||
attribute | total_anemone_CS_activity | _FillValue | float | NaN |
attribute | total_anemone_CS_activity | actual_range | float | 0.0144, 0.1199 |
attribute | total_anemone_CS_activity | bcodmo_name | String | metabolic_enzyme |
attribute | total_anemone_CS_activity | description | String | Total holobiont citrate synthase activity |
attribute | total_anemone_CS_activity | long_name | String | Total Anemone CS Activity |
attribute | total_anemone_CS_activity | units | String | Units |
variable | host_DNA_total | double | ||
attribute | host_DNA_total | _FillValue | double | NaN |
attribute | host_DNA_total | actual_range | double | 0.104517579, 18.21235118 |
attribute | host_DNA_total | bcodmo_name | String | unknown |
attribute | host_DNA_total | description | String | Total host DNA content |
attribute | host_DNA_total | long_name | String | Host DNA Total |
attribute | host_DNA_total | units | String | micrograms |
variable | host_symb_dens_normal | float | ||
attribute | host_symb_dens_normal | _FillValue | float | NaN |
attribute | host_symb_dens_normal | actual_range | float | 1.0364, 13.3863 |
attribute | host_symb_dens_normal | bcodmo_name | String | abundance |
attribute | host_symb_dens_normal | description | String | Host protein-normalised symbiont density |
attribute | host_symb_dens_normal | long_name | String | Host Symb Dens Normal |
attribute | host_symb_dens_normal | nerc_identifier | String | https://vocab.nerc.ac.uk/collection/P03/current/B070/ |
attribute | host_symb_dens_normal | units | String | million cells per mg protein |
variable | symb_biomass_fraction | float | ||
attribute | symb_biomass_fraction | _FillValue | float | NaN |
attribute | symb_biomass_fraction | actual_range | float | 0.0291, 0.2336 |
attribute | symb_biomass_fraction | bcodmo_name | String | unknown |
attribute | symb_biomass_fraction | colorBarMaximum | double | 1.0 |
attribute | symb_biomass_fraction | colorBarMinimum | double | 0.0 |
attribute | symb_biomass_fraction | description | String | Symbiont biomass fraction (calculated as total symbiont protein [mg]/total host+symbiont protein [mg]) |
attribute | symb_biomass_fraction | long_name | String | Symb Biomass Fraction |
attribute | symb_biomass_fraction | units | String | dimensionless |
variable | symb_respir_fraction | float | ||
attribute | symb_respir_fraction | _FillValue | float | NaN |
attribute | symb_respir_fraction | actual_range | float | 0.00665, 0.1981 |
attribute | symb_respir_fraction | bcodmo_name | String | unknown |
attribute | symb_respir_fraction | colorBarMaximum | double | 1.0 |
attribute | symb_respir_fraction | colorBarMinimum | double | 0.0 |
attribute | symb_respir_fraction | description | String | Symbiont respiration fraction (calculated as total symbiont citrate synthase activity [U]/total host+symbiont citrate synthase activity [U]) |
attribute | symb_respir_fraction | long_name | String | Symb Respir Fraction |
attribute | symb_respir_fraction | units | String | dimensionless |
variable | genome_ratio_CO1 | float | ||
attribute | genome_ratio_CO1 | _FillValue | float | NaN |
attribute | genome_ratio_CO1 | actual_range | float | 20.2126, 406.0552 |
attribute | genome_ratio_CO1 | bcodmo_name | String | unknown |
attribute | genome_ratio_CO1 | description | String | Mitochondrial:nuclear genome ratio calculated using CO1 (QiaAmp DNA Mini Kit) |
attribute | genome_ratio_CO1 | long_name | String | Genome Ratio CO1 |
attribute | genome_ratio_CO1 | units | String | dimensionless |
variable | genome_ratio_AT96 | float | ||
attribute | genome_ratio_AT96 | _FillValue | float | NaN |
attribute | genome_ratio_AT96 | actual_range | float | 13.1141, 395.0889 |
attribute | genome_ratio_AT96 | bcodmo_name | String | unknown |
attribute | genome_ratio_AT96 | description | String | Mitochondrial:nuclear genome ratio calculated using ATP6 (QiaAmp DNA Mini Kit) |
attribute | genome_ratio_AT96 | long_name | String | Genome Ratio AT96 |
attribute | genome_ratio_AT96 | units | String | dimensionless |
variable | genome_ratio_CO1_Pro | float | ||
attribute | genome_ratio_CO1_Pro | _FillValue | float | NaN |
attribute | genome_ratio_CO1_Pro | actual_range | float | 50.8763, 352.7607 |
attribute | genome_ratio_CO1_Pro | bcodmo_name | String | unknown |
attribute | genome_ratio_CO1_Pro | description | String | Mitochondrial:nuclear genome ratio calculated using CO1 (Promega Wizard Kit) |
attribute | genome_ratio_CO1_Pro | long_name | String | Genome Ratio CO1 Pro |
attribute | genome_ratio_CO1_Pro | units | String | dimensionless |
The information in the table above is also available in other file formats (.csv, .htmlTable, .itx, .json, .jsonlCSV1, .jsonlCSV, .jsonlKVP, .mat, .nc, .nccsv, .tsv, .xhtml) via a RESTful web service.