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     data   graph     files  public Coral species list and site descriptions for studies conducted on the partial SSU rRNA genes
of bacteria and archaea in the Florida Keys, Australia, and Micronesia in 2013. (Coral
Microbial Relationships project)
   ?     I   M   background (external link) RSS BCO-DMO bcodmo_dataset_662096

The Dataset's Variables and Attributes

Row Type Variable Name Attribute Name Data Type Value
attribute NC_GLOBAL access_formats String .htmlTable,.csv,.json,.mat,.nc,.tsv,.esriCsv,.geoJson
attribute NC_GLOBAL acquisition_description String Coral collection and processing

Coral fragments were collected by a scuba diver using a hammer and chisel
during field sampling trips to Kapangamarangi Atoll, Micronesia (November
2012), Florida Keys, U.S.A. (May 2013) and Magnetic Bay, Australia (November
2013). Fragments were stored in a cooler containing ice until they were flash
frozen in liquid nitrogen. Fragments were obtained from 3 representative
colonies of the following species:
Porites\u00a0lobata,\u00a0Pocillopora\u00a0verrucosa,\u00a0Acropora\u00a0humilis,
Orbicella\u00a0faveolata, Montastraea\u00a0cavernosa,
O.\u00a0annularis,\u00a0and\u00a0Diploria\u00a0strigosa.\u00a0Fragments were
shipped back to Woods Hole Oceanographic Institution and stored at -80 C until
they were processed.\u00a0
attribute NC_GLOBAL awards_0_award_nid String 564441
attribute NC_GLOBAL awards_0_award_number String OCE-1233612
attribute NC_GLOBAL awards_0_data_url String http://www.nsf.gov/awardsearch/showAward.do?AwardNumber=1233612 (external link)
attribute NC_GLOBAL awards_0_funder_name String NSF Division of Ocean Sciences
attribute NC_GLOBAL awards_0_funding_acronym String NSF OCE
attribute NC_GLOBAL awards_0_funding_source_nid String 355
attribute NC_GLOBAL awards_0_program_manager String Dr David L. Garrison
attribute NC_GLOBAL awards_0_program_manager_nid String 50534
attribute NC_GLOBAL cdm_data_type String Other
attribute NC_GLOBAL comment String Sample Descriptions and Site Locations
A. Apprill, PI
Version 20 October 2016
attribute NC_GLOBAL Conventions String COARDS, CF-1.6, ACDD-1.3
attribute NC_GLOBAL creator_email String info at bco-dmo.org
attribute NC_GLOBAL creator_name String BCO-DMO
attribute NC_GLOBAL creator_type String institution
attribute NC_GLOBAL creator_url String https://www.bco-dmo.org/ (external link)
attribute NC_GLOBAL data_source String extract_data_as_tsv version 2.2d 13 Jun 2019
attribute NC_GLOBAL date_created String 2016-10-20T16:46:24Z
attribute NC_GLOBAL date_modified String 2019-04-19T19:26:21Z
attribute NC_GLOBAL defaultDataQuery String &time
attribute NC_GLOBAL doi String 10.1575/1912/bco-dmo.662096.1
attribute NC_GLOBAL Easternmost_Easting double 146.852
attribute NC_GLOBAL geospatial_lat_max double 24.606054
attribute NC_GLOBAL geospatial_lat_min double -15.0883
attribute NC_GLOBAL geospatial_lat_units String degrees_north
attribute NC_GLOBAL geospatial_lon_max double 146.852
attribute NC_GLOBAL geospatial_lon_min double -154.774645
attribute NC_GLOBAL geospatial_lon_units String degrees_east
attribute NC_GLOBAL geospatial_vertical_max double 33.0
attribute NC_GLOBAL geospatial_vertical_min double 1.0
attribute NC_GLOBAL geospatial_vertical_positive String down
attribute NC_GLOBAL geospatial_vertical_units String m
attribute NC_GLOBAL infoUrl String https://www.bco-dmo.org/dataset/662096 (external link)
attribute NC_GLOBAL institution String BCO-DMO
attribute NC_GLOBAL keywords String bco, bco-dmo, biological, chemical, collection, collection_site, colony, colony_name, data, dataset, depth, dmo, erddap, latitude, longitude, management, name, oceanography, office, preliminary, site, species, taxonomy
attribute NC_GLOBAL license String The data may be used and redistributed for free but is not intended
for legal use, since it may contain inaccuracies. Neither the data
Contributor, ERD, NOAA, nor the United States Government, nor any
of their employees or contractors, makes any warranty, express or
implied, including warranties of merchantability and fitness for a
particular purpose, or assumes any legal liability for the accuracy,
completeness, or usefulness, of this information.
attribute NC_GLOBAL metadata_source String https://www.bco-dmo.org/api/dataset/662096 (external link)
attribute NC_GLOBAL Northernmost_Northing double 24.606054
attribute NC_GLOBAL param_mapping String {'662096': {'lat': 'master - latitude', 'depth': 'master - depth', 'lon': 'master - longitude'}}
attribute NC_GLOBAL parameter_source String https://www.bco-dmo.org/mapserver/dataset/662096/parameters (external link)
attribute NC_GLOBAL people_0_affiliation String Woods Hole Oceanographic Institution
attribute NC_GLOBAL people_0_affiliation_acronym String WHOI
attribute NC_GLOBAL people_0_person_name String Dr Amy Apprill
attribute NC_GLOBAL people_0_person_nid String 553489
attribute NC_GLOBAL people_0_role String Principal Investigator
attribute NC_GLOBAL people_0_role_type String originator
attribute NC_GLOBAL people_1_affiliation String Woods Hole Oceanographic Institution
attribute NC_GLOBAL people_1_affiliation_acronym String WHOI
attribute NC_GLOBAL people_1_person_name String Laura Weber
attribute NC_GLOBAL people_1_person_nid String 662109
attribute NC_GLOBAL people_1_role String Contact
attribute NC_GLOBAL people_1_role_type String related
attribute NC_GLOBAL people_2_affiliation String Woods Hole Oceanographic Institution
attribute NC_GLOBAL people_2_affiliation_acronym String WHOI BCO-DMO
attribute NC_GLOBAL people_2_person_name String Hannah Ake
attribute NC_GLOBAL people_2_person_nid String 650173
attribute NC_GLOBAL people_2_role String BCO-DMO Data Manager
attribute NC_GLOBAL people_2_role_type String related
attribute NC_GLOBAL project String Fundamental Coral-Microbial Associations
attribute NC_GLOBAL projects_0_acronym String Coral Microbial Relationships
attribute NC_GLOBAL projects_0_description String Description from NSF award abstract:
Reef-building corals are in decline worldwide due in part to climate change and other human activities, and it is becoming increasingly important to understand what aspects of coral biology are degraded by environmental stress which then leads to coral mortality. It is now widely known that corals harbor communities of bacteria and archaea that are believed to play important roles in maintaining the health of their hosts, but we lack any appreciable understanding about the identity of the microbial associates regularly residing within healthy, reef-building corals. This project asks the central question: do reef-building corals harbor fundamental or persistent microbial associates that are symbiotic within their tissues? In order to address this hypothesis, the investigator will assess the identity of the bacterial and archaeal microbes using a variety of molecular and microscopy approaches that includes the identification and localization of a widespread group of coral bacterial associates belonging to the genus Endozoicomonas. The results of this study will then be used to develop additional questions about the role of these microbial associates in nutrient cycling and how they contribute to the health and survival of corals.
attribute NC_GLOBAL projects_0_end_date String 2016-08
attribute NC_GLOBAL projects_0_geolocation String Florida Keys, Federated States of Micronesia, Red Sea, & Bermuda
attribute NC_GLOBAL projects_0_name String Fundamental Coral-Microbial Associations
attribute NC_GLOBAL projects_0_project_nid String 564442
attribute NC_GLOBAL projects_0_start_date String 2012-09
attribute NC_GLOBAL publisher_name String Hannah Ake
attribute NC_GLOBAL publisher_role String BCO-DMO Data Manager(s)
attribute NC_GLOBAL sourceUrl String (local files)
attribute NC_GLOBAL Southernmost_Northing double -15.0883
attribute NC_GLOBAL standard_name_vocabulary String CF Standard Name Table v29
attribute NC_GLOBAL summary String Coral species list and site descriptions for studies conducted on the partial SSU rRNA genes of bacteria and archaea in the Florida Keys, Australia, and Micronesia in 2013. (Coral Microbial Relationships project)
attribute NC_GLOBAL title String Coral species list and site descriptions for studies conducted on the partial SSU rRNA genes of bacteria and archaea in the Florida Keys, Australia, and Micronesia in 2013. (Coral Microbial Relationships project)
attribute NC_GLOBAL version String 1
attribute NC_GLOBAL Westernmost_Easting double -154.774645
attribute NC_GLOBAL xml_source String osprey2erddap.update_xml() v1.5-beta
variable species   String  
attribute species description String Species of coral sampled
attribute species ioos_category String Taxonomy
attribute species long_name String Species
attribute species units String unitless
variable colony_name   String  
attribute colony_name description String PI issued ID for the coral colony sampled
attribute colony_name ioos_category String Unknown
attribute colony_name long_name String Colony Name
attribute colony_name units String unitless
variable collection_site   String  
attribute collection_site description String Geographic location where sampling occurred
attribute collection_site ioos_category String Unknown
attribute collection_site long_name String Collection Site
attribute collection_site units String unitless
variable latitude   double  
attribute latitude _CoordinateAxisType String Lat
attribute latitude _FillValue double NaN
attribute latitude actual_range double -15.0883, 24.606054
attribute latitude axis String Y
attribute latitude colorBarMaximum double 90.0
attribute latitude colorBarMinimum double -90.0
attribute latitude description String Latitude; N is positive
attribute latitude ioos_category String Location
attribute latitude long_name String Latitude
attribute latitude standard_name String latitude
attribute latitude units String degrees_north
variable longitude   double  
attribute longitude _CoordinateAxisType String Lon
attribute longitude _FillValue double NaN
attribute longitude actual_range double -154.774645, 146.852
attribute longitude axis String X
attribute longitude colorBarMaximum double 180.0
attribute longitude colorBarMinimum double -180.0
attribute longitude description String Longitude; W is positive
attribute longitude ioos_category String Location
attribute longitude long_name String Longitude
attribute longitude standard_name String longitude
attribute longitude units String degrees_east
variable depth   double  
attribute depth _CoordinateAxisType String Height
attribute depth _CoordinateZisPositive String down
attribute depth _FillValue double NaN
attribute depth actual_range double 1.0, 33.0
attribute depth axis String Z
attribute depth colorBarMaximum double 8000.0
attribute depth colorBarMinimum double -8000.0
attribute depth colorBarPalette String TopographyDepth
attribute depth description String Depth where sampling occurred
attribute depth ioos_category String Location
attribute depth long_name String Depth
attribute depth positive String down
attribute depth standard_name String depth
attribute depth units String m

The information in the table above is also available in other file formats (.csv, .htmlTable, .itx, .json, .jsonlCSV, .jsonlKVP, .mat, .nc, .nccsv, .tsv, .xhtml) via a RESTful web service.


 
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