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Grid DAP Data | Sub- set | Table DAP Data | Make A Graph | W M S | Source Data Files | Acces- sible | Title | Sum- mary | FGDC, ISO, Metadata | Back- ground Info | RSS | E | Institution | Dataset ID |
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data | graph | files | public | [Change in denitrification - N2 flux] - Change in denitrification due to oyster reefs from the coast of North Carolina in 2010 (Microbial Regulation of Greenhouse Gas N2O Emission from Intertidal Oyster Reefs) | F I M | background | BCO-DMO | bcodmo_dataset_704359 |
Row Type | Variable Name | Attribute Name | Data Type | Value |
---|---|---|---|---|
attribute | NC_GLOBAL | access_formats | String | .htmlTable,.csv,.json,.mat,.nc,.tsv,.esriCsv,.geoJson |
attribute | NC_GLOBAL | acquisition_description | String | Methodology from\u00a0Smyth, A. R., Piehler, M. F. and Grabowski, J. H. (2015), Habitat context influences nitrogen removal by restored oyster reefs. J Appl Ecol, 52: 716\u2013725. doi:[10.1111/1365-2664.12435](\\"https://onlinelibrary.wiley.com/doi/10.1111/1365-2664.12435/abstract\\") Within 4\u00a0h of collection, sediment cores were set up in a continuous flow core incubation system to measure steady-state nutrient and dissolved gas fluxes, described in Piehler & Smyth (2011). Briefly, cores were sealed with gas-tight lids, which had an inflow and outflow port. Water from a reservoir was pulled over the cores at a flow rate of 1\u00a0mL min\u22121. Triplicate dissolved gases and duplicate dissolved inorganic nitrogen samples were collected from the outflow and inflow periodically over the next 24\u00a0h. To examine how sediments from different habitat contexts responded to nitrate pulses, nitrate concentration in the reservoir water was elevated with NaNO3\u00a0(~800\u00a0\u03bcm) after 48\u00a0h of sampling. Dissolved gas and inorganic nitrogen samples were then collected for an additional 48\u00a0h. Incubations were conducted in the dark and at ambient temperature (30\u00a0\u00b0C). Water samples from laboratory experiments were\u00a0analysed\u00a0immediately upon collection for dissolved gasses (N2,\u00a0O2\u00a0and Ar) with membrane inlet mass spectrometry (MIMS). Concentrations of dissolved N2\u00a0and O2\u00a0were determined using the ratio with Ar (Kana\u00a0et\u00a0al.\u00a01994). Coefficients of variation for N2/Ar were 0\u00b705% and 0\u00b704% for O2/Ar. Water samples from laboratory experiments for dissolved nutrient determination were filtered through Whatman GF/F glass\u00a0fibre\u00a0filters (25\u00a0mm diameter, 0\u00b77\u00a0\u03bcm nominal pore size) and frozen until analysis. Dissolved inorganic nutrients were analysed with a Lachat Quick-Chem 8000 automated ion analyser for\u00a0 [math formula] + [math formula] \u00a0(reported as NOx) and\u00a0 [math formula] \u00a0concentrations using standard protocols (Lachat Instruments, Milwaukee, WI, USA:\u00a0 [math formula] / [math formula] \u00a0method 31-107-04-1-A,\u00a0 [math formula] \u00a0method 31-107-06-1-A; detection limits: 0\u00b704\u00a0\u03bcm\u00a0NOx, 0\u00b718\u00a0\u03bcm\u00a0 [math formula] ; CV(%): 0\u00b79% NOx\u00a0and 2\u00b76%\u00a0 [math formula] ). Upon completion of the incubations, the upper 2\u00a0cm of sediment in each core was sampled for organic matter content by mass difference from dried sediments before ignition (105\u00a0\u00b0C for 6\u00a0h) and after ignition (525\u00a0\u00b0C for 3\u00a0h). Water Quality Data: \u00a0 |
attribute | NC_GLOBAL | awards_0_award_nid | String | 568863 |
attribute | NC_GLOBAL | awards_0_award_number | String | OCE-1233372 |
attribute | NC_GLOBAL | awards_0_data_url | String | http://www.nsf.gov/awardsearch/showAward.do?AwardNumber=1233372 |
attribute | NC_GLOBAL | awards_0_funder_name | String | NSF Division of Ocean Sciences |
attribute | NC_GLOBAL | awards_0_funding_acronym | String | NSF OCE |
attribute | NC_GLOBAL | awards_0_funding_source_nid | String | 355 |
attribute | NC_GLOBAL | awards_0_program_manager | String | David L. Garrison |
attribute | NC_GLOBAL | awards_0_program_manager_nid | String | 50534 |
attribute | NC_GLOBAL | cdm_data_type | String | Other |
attribute | NC_GLOBAL | comment | String | Change in denitrification due to oyster reefs M. Piehler, B.K. Song, C. Tobias, and M. Brush, PIs Version 6 June 2017 |
attribute | NC_GLOBAL | Conventions | String | COARDS, CF-1.6, ACDD-1.3 |
attribute | NC_GLOBAL | creator_email | String | info at bco-dmo.org |
attribute | NC_GLOBAL | creator_name | String | BCO-DMO |
attribute | NC_GLOBAL | creator_type | String | institution |
attribute | NC_GLOBAL | creator_url | String | https://www.bco-dmo.org/ |
attribute | NC_GLOBAL | data_source | String | extract_data_as_tsv version 2.3 19 Dec 2019 |
attribute | NC_GLOBAL | date_created | String | 2017-06-07T00:02:55Z |
attribute | NC_GLOBAL | date_modified | String | 2019-03-28T17:54:06Z |
attribute | NC_GLOBAL | defaultDataQuery | String | &time<now |
attribute | NC_GLOBAL | doi | String | 10.1575/1912/bco-dmo.704359.1 |
attribute | NC_GLOBAL | Easternmost_Easting | double | -76.6107833 |
attribute | NC_GLOBAL | geospatial_lat_max | double | 34.6939667 |
attribute | NC_GLOBAL | geospatial_lat_min | double | 34.68235 |
attribute | NC_GLOBAL | geospatial_lat_units | String | degrees_north |
attribute | NC_GLOBAL | geospatial_lon_max | double | -76.6107833 |
attribute | NC_GLOBAL | geospatial_lon_min | double | -76.6226 |
attribute | NC_GLOBAL | geospatial_lon_units | String | degrees_east |
attribute | NC_GLOBAL | infoUrl | String | https://www.bco-dmo.org/dataset/704359 |
attribute | NC_GLOBAL | institution | String | BCO-DMO |
attribute | NC_GLOBAL | instruments_0_acronym | String | IR Mass Spec |
attribute | NC_GLOBAL | instruments_0_dataset_instrument_nid | String | 704369 |
attribute | NC_GLOBAL | instruments_0_description | String | The Isotope-ratio Mass Spectrometer is a particular type of mass spectrometer used to measure the relative abundance of isotopes in a given sample (e.g. VG Prism II Isotope Ratio Mass-Spectrometer). |
attribute | NC_GLOBAL | instruments_0_instrument_external_identifier | String | https://vocab.nerc.ac.uk/collection/L05/current/LAB16/ |
attribute | NC_GLOBAL | instruments_0_instrument_name | String | Isotope-ratio Mass Spectrometer |
attribute | NC_GLOBAL | instruments_0_instrument_nid | String | 469 |
attribute | NC_GLOBAL | instruments_0_supplied_name | String | IRMS |
attribute | NC_GLOBAL | instruments_1_acronym | String | Nutrient Autoanalyzer |
attribute | NC_GLOBAL | instruments_1_dataset_instrument_description | String | Used to analyze dissolved inorganic nutrients |
attribute | NC_GLOBAL | instruments_1_dataset_instrument_nid | String | 704519 |
attribute | NC_GLOBAL | instruments_1_description | String | Nutrient Autoanalyzer is a generic term used when specific type, make and model were not specified. In general, a Nutrient Autoanalyzer is an automated flow-thru system for doing nutrient analysis (nitrate, ammonium, orthophosphate, and silicate) on seawater samples. |
attribute | NC_GLOBAL | instruments_1_instrument_external_identifier | String | https://vocab.nerc.ac.uk/collection/L05/current/LAB04/ |
attribute | NC_GLOBAL | instruments_1_instrument_name | String | Nutrient Autoanalyzer |
attribute | NC_GLOBAL | instruments_1_instrument_nid | String | 558 |
attribute | NC_GLOBAL | instruments_1_supplied_name | String | Lachat Quick-Chem 8000 automated ion analyzer |
attribute | NC_GLOBAL | instruments_2_dataset_instrument_description | String | Used to collect water quality data |
attribute | NC_GLOBAL | instruments_2_dataset_instrument_nid | String | 704520 |
attribute | NC_GLOBAL | instruments_2_description | String | Records temperature data over a period of time. |
attribute | NC_GLOBAL | instruments_2_instrument_name | String | Temperature Logger |
attribute | NC_GLOBAL | instruments_2_instrument_nid | String | 639396 |
attribute | NC_GLOBAL | instruments_2_supplied_name | String | YSI 600 Series Sonde and Model 650 data logger |
attribute | NC_GLOBAL | keywords | String | area, bco, bco-dmo, biological, chemical, data, dataset, date, dmo, dN2, erddap, latitude, longitude, management, nutrients, oceanography, office, preliminary, time |
attribute | NC_GLOBAL | license | String | https://www.bco-dmo.org/dataset/704359/license |
attribute | NC_GLOBAL | metadata_source | String | https://www.bco-dmo.org/api/dataset/704359 |
attribute | NC_GLOBAL | Northernmost_Northing | double | 34.6939667 |
attribute | NC_GLOBAL | param_mapping | String | {'704359': {'lat': 'master - latitude', 'lon': 'master - longitude'}} |
attribute | NC_GLOBAL | parameter_source | String | https://www.bco-dmo.org/mapserver/dataset/704359/parameters |
attribute | NC_GLOBAL | people_0_affiliation | String | University of North Carolina at Chapel Hill |
attribute | NC_GLOBAL | people_0_affiliation_acronym | String | UNC-Chapel Hill |
attribute | NC_GLOBAL | people_0_person_name | String | Michael F. Piehler |
attribute | NC_GLOBAL | people_0_person_nid | String | 522931 |
attribute | NC_GLOBAL | people_0_role | String | Principal Investigator |
attribute | NC_GLOBAL | people_0_role_type | String | originator |
attribute | NC_GLOBAL | people_1_affiliation | String | Virginia Institute of Marine Science |
attribute | NC_GLOBAL | people_1_affiliation_acronym | String | VIMS |
attribute | NC_GLOBAL | people_1_person_name | String | Mark J. Brush |
attribute | NC_GLOBAL | people_1_person_nid | String | 568861 |
attribute | NC_GLOBAL | people_1_role | String | Co-Principal Investigator |
attribute | NC_GLOBAL | people_1_role_type | String | originator |
attribute | NC_GLOBAL | people_2_affiliation | String | Virginia Institute of Marine Science |
attribute | NC_GLOBAL | people_2_affiliation_acronym | String | VIMS |
attribute | NC_GLOBAL | people_2_person_name | String | Bongkeun Song |
attribute | NC_GLOBAL | people_2_person_nid | String | 51729 |
attribute | NC_GLOBAL | people_2_role | String | Co-Principal Investigator |
attribute | NC_GLOBAL | people_2_role_type | String | originator |
attribute | NC_GLOBAL | people_3_affiliation | String | University of Connecticut |
attribute | NC_GLOBAL | people_3_affiliation_acronym | String | UConn - Avery Point |
attribute | NC_GLOBAL | people_3_person_name | String | Craig Tobias |
attribute | NC_GLOBAL | people_3_person_nid | String | 51731 |
attribute | NC_GLOBAL | people_3_role | String | Co-Principal Investigator |
attribute | NC_GLOBAL | people_3_role_type | String | originator |
attribute | NC_GLOBAL | people_4_affiliation | String | University of North Carolina at Chapel Hill |
attribute | NC_GLOBAL | people_4_affiliation_acronym | String | UNC-Chapel Hill |
attribute | NC_GLOBAL | people_4_person_name | String | Michael F. Piehler |
attribute | NC_GLOBAL | people_4_person_nid | String | 522931 |
attribute | NC_GLOBAL | people_4_role | String | Contact |
attribute | NC_GLOBAL | people_4_role_type | String | related |
attribute | NC_GLOBAL | people_5_affiliation | String | Woods Hole Oceanographic Institution |
attribute | NC_GLOBAL | people_5_affiliation_acronym | String | WHOI BCO-DMO |
attribute | NC_GLOBAL | people_5_person_name | String | Hannah Ake |
attribute | NC_GLOBAL | people_5_person_nid | String | 650173 |
attribute | NC_GLOBAL | people_5_role | String | BCO-DMO Data Manager |
attribute | NC_GLOBAL | people_5_role_type | String | related |
attribute | NC_GLOBAL | project | String | Oyster Reef N2O Emission |
attribute | NC_GLOBAL | projects_0_acronym | String | Oyster Reef N2O Emission |
attribute | NC_GLOBAL | projects_0_description | String | Extracted from the NSF award abstract: Oyster reefs are biogeochemical hot spots and prominent estuarine habitats that provide disproportionate ecological function. Suspension-feeding eastern oysters, Crassostrea virginica, are capable of improving water quality and diminishing eutrophication by filtering nutrients and particles from the water and depositing them in the sediments. Remineralization of these deposits may enhance sedimentary denitrification that facilitates nitrogen removal in tidal estuaries. However, the scientific underpinning of oyster reef function has been challenged in various studies. In addition, recent studies of filter feeding invertebrates reported the production of nitrous oxide (N2O), a greenhouse gas, as an end product of incomplete denitrification by gut microbes. C. virginica could be another source of N2O flux from intertidal habitats. Preliminary work indicated substantial N2O production from individual oysters. The estimated N2O production from high density oyster reefs may exceed the N2O flux measured from some estuaries. With the new discovery of N2O emission and uncertainty regarding eutrophication control, the ecological value of oyster reef restoration may become equivocal. This project will quantify N2O fluxes to understand the factors controlling N2O emission from oyster reefs. Sedimentary N processes will be examined to develop an oyster reef N model to estimate N2O emission from tidal creek estuaries relative to other N cycling processes. The PIs hypothesize that intertidal oyster reefs are a substantial source of N2O emission from estuarine ecosystems and the magnitude of emission may be linked to water quality. If substantial N2O flux from oyster reefs is validated, ecological benefits of oyster reef restoration should be reevaluated. This interdisciplinary research team includes a microbial ecologist, a biogeochemist, an ecologist and an ecosystem modeler. They will utilize stable isotope and molecular microbiological techniques to quantify oyster N2O production, elucidate microbial sources of N2O emission from oysters and sediments, and estimate seasonal variation of N2O fluxes from oyster reefs. Measurements from this study will be integrated into a coupled oyster bioenergetics-sediment biogeochemistry model to compare system level rates of N cycling on oyster reefs as a function of oyster density and water quality. Modeling results will be used to assess the relative trade-offs of oyster restoration associated with N cycling. They expect to deliver the following end products:1) estimation of annual N2O flux from oyster reefs as an additional source of greenhouse gases from estuaries, 2) a better understanding of the environmental and microbial factors influencing N2O and N2 fluxes in tidal estuaries, 3) transformative knowledge for the effect of oyster restoration on water quality enhancement and ecosystem function, 4) direct guidance for oyster restoration projects whose goals include water quality enhancement, and 5) a modeling tool for use in research and restoration planning. |
attribute | NC_GLOBAL | projects_0_end_date | String | 2015-08 |
attribute | NC_GLOBAL | projects_0_name | String | Microbial Regulation of Greenhouse Gas N2O Emission from Intertidal Oyster Reefs |
attribute | NC_GLOBAL | projects_0_project_nid | String | 527289 |
attribute | NC_GLOBAL | projects_0_start_date | String | 2012-12 |
attribute | NC_GLOBAL | publisher_name | String | Biological and Chemical Oceanographic Data Management Office (BCO-DMO) |
attribute | NC_GLOBAL | publisher_type | String | institution |
attribute | NC_GLOBAL | sourceUrl | String | (local files) |
attribute | NC_GLOBAL | Southernmost_Northing | double | 34.68235 |
attribute | NC_GLOBAL | standard_name_vocabulary | String | CF Standard Name Table v55 |
attribute | NC_GLOBAL | summary | String | Change in denitrification due to oyster reefs from the coast of North Carolina in 2010 |
attribute | NC_GLOBAL | title | String | [Change in denitrification - N2 flux] - Change in denitrification due to oyster reefs from the coast of North Carolina in 2010 (Microbial Regulation of Greenhouse Gas N2O Emission from Intertidal Oyster Reefs) |
attribute | NC_GLOBAL | version | String | 1 |
attribute | NC_GLOBAL | Westernmost_Easting | double | -76.6226 |
attribute | NC_GLOBAL | xml_source | String | osprey2erddap.update_xml() v1.3 |
variable | date | String | ||
attribute | date | bcodmo_name | String | date |
attribute | date | description | String | Date of collection; YYYY/MM/DD |
attribute | date | long_name | String | Date |
attribute | date | nerc_identifier | String | https://vocab.nerc.ac.uk/collection/P01/current/ADATAA01/ |
attribute | date | source_name | String | date |
attribute | date | time_precision | String | 1970-01-01 |
attribute | date | units | String | unitless |
variable | area | String | ||
attribute | area | bcodmo_name | String | site |
attribute | area | description | String | Type of substrate where oysters were measured |
attribute | area | long_name | String | Area |
attribute | area | units | String | unitless |
variable | location | byte | ||
attribute | location | _FillValue | byte | 127 |
attribute | location | actual_range | byte | 1, 3 |
attribute | location | bcodmo_name | String | site |
attribute | location | description | String | PI issued location IDs that correspond to specific coordinates and experimental treatments |
attribute | location | long_name | String | Location |
attribute | location | units | String | unitless |
variable | latitude | double | ||
attribute | latitude | _CoordinateAxisType | String | Lat |
attribute | latitude | _FillValue | double | NaN |
attribute | latitude | actual_range | double | 34.68235, 34.6939667 |
attribute | latitude | axis | String | Y |
attribute | latitude | bcodmo_name | String | latitude |
attribute | latitude | colorBarMaximum | double | 90.0 |
attribute | latitude | colorBarMinimum | double | -90.0 |
attribute | latitude | description | String | Latitude |
attribute | latitude | ioos_category | String | Location |
attribute | latitude | long_name | String | Latitude |
attribute | latitude | nerc_identifier | String | https://vocab.nerc.ac.uk/collection/P09/current/LATX/ |
attribute | latitude | standard_name | String | latitude |
attribute | latitude | units | String | degrees_north |
variable | longitude | double | ||
attribute | longitude | _CoordinateAxisType | String | Lon |
attribute | longitude | _FillValue | double | NaN |
attribute | longitude | actual_range | double | -76.6226, -76.6107833 |
attribute | longitude | axis | String | X |
attribute | longitude | bcodmo_name | String | longitude |
attribute | longitude | colorBarMaximum | double | 180.0 |
attribute | longitude | colorBarMinimum | double | -180.0 |
attribute | longitude | description | String | Longitude |
attribute | longitude | ioos_category | String | Location |
attribute | longitude | long_name | String | Longitude |
attribute | longitude | nerc_identifier | String | https://vocab.nerc.ac.uk/collection/P09/current/LONX/ |
attribute | longitude | standard_name | String | longitude |
attribute | longitude | units | String | degrees_east |
variable | nutrients | String | ||
attribute | nutrients | bcodmo_name | String | treatment |
attribute | nutrients | description | String | Indication of whether or not experimental levels of nutrients were used |
attribute | nutrients | long_name | String | Nutrients |
attribute | nutrients | units | String | unitless |
variable | dN2 | double | ||
attribute | dN2 | _FillValue | double | NaN |
attribute | dN2 | actual_range | double | -56.75696135, 517.4479587 |
attribute | dN2 | bcodmo_name | String | unknown |
attribute | dN2 | description | String | Change in denitrification (N2 flux) due to the oyster reef. Calculated by difference from reef and control in each location. |
attribute | dN2 | long_name | String | D N2 |
attribute | dN2 | units | String | umol N m-2 hr-1 |
The information in the table above is also available in other file formats (.csv, .htmlTable, .itx, .json, .jsonlCSV1, .jsonlCSV, .jsonlKVP, .mat, .nc, .nccsv, .tsv, .xhtml) via a RESTful web service.