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Title Sum-
Institution Dataset ID
     data   graph     files  public Bleaching, disease, and mortality on A. cervicornis individuals in Elliot Key, Florida during
2014 and 2015 (EMUCoReS project)
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The Dataset's Variables and Attributes

Row Type Variable Name Attribute Name Data Type Value
attribute NC_GLOBAL access_formats String .htmlTable,.csv,.json,.mat,.nc,.tsv
attribute NC_GLOBAL acquisition_description String At indicated dates, individual corals (ramets) were visually assessed for
bleaching, disease, and mortality. Corals were determined to be diseased
by\u00a0White\u00a0band (white) when there was a band of white tissue
traversing the branches progressing from the bottom to the top of the colony.

Corals were identified as diseased with Rapid Tissue Loss (RTL) when gently
fanning by hand resulted in the dissociation of tissue from the coral's
skeleton. Mortality was noted as\u00a0 no (no mortality observed), partial
(the minority of the colony was no longer covered with live tissue), mostly
dead (the majority of the colony was no longer covered with live tissue), or
dead (no observable tissue)

Bleaching was noted for those corals paling or entirely lacking in
pigmentation.\u00a0 A reference color card (Seibeck et al., 2006) was used as
a pigmentation reference. The normal level of pigmentation was C3 or darker
(not bleached). Colors lighter than C3 were considered bleached.
attribute NC_GLOBAL awards_0_award_nid String 637742
attribute NC_GLOBAL awards_0_award_number String OCE-1503483
attribute NC_GLOBAL awards_0_data_url String http://www.nsf.gov/awardsearch/showAward.do?AwardNumber=1503483 (external link)
attribute NC_GLOBAL awards_0_funder_name String NSF Division of Ocean Sciences
attribute NC_GLOBAL awards_0_funding_acronym String NSF OCE
attribute NC_GLOBAL awards_0_funding_source_nid String 355
attribute NC_GLOBAL awards_0_program_manager String David L. Garrison
attribute NC_GLOBAL awards_0_program_manager_nid String 50534
attribute NC_GLOBAL awards_1_award_nid String 637749
attribute NC_GLOBAL awards_1_award_number String OCE-1503430
attribute NC_GLOBAL awards_1_data_url String http://www.nsf.gov/awardsearch/showAward.do?AwardNumber=1503430 (external link)
attribute NC_GLOBAL awards_1_funder_name String NSF Division of Ocean Sciences
attribute NC_GLOBAL awards_1_funding_acronym String NSF OCE
attribute NC_GLOBAL awards_1_funding_source_nid String 355
attribute NC_GLOBAL awards_1_program_manager String David L. Garrison
attribute NC_GLOBAL awards_1_program_manager_nid String 50534
attribute NC_GLOBAL cdm_data_type String Other
attribute NC_GLOBAL comment String Visual Monitoring of A. cervicornis
M. Rodriguez-Lanetty, D. Lirman, and L. Richardson, PIs
Version 26 July 2017
attribute NC_GLOBAL Conventions String COARDS, CF-1.6, ACDD-1.3
attribute NC_GLOBAL creator_email String info at bco-dmo.org
attribute NC_GLOBAL creator_name String BCO-DMO
attribute NC_GLOBAL creator_type String institution
attribute NC_GLOBAL creator_url String https://www.bco-dmo.org/ (external link)
attribute NC_GLOBAL data_source String extract_data_as_tsv version 2.3 19 Dec 2019
attribute NC_GLOBAL date_created String 2017-07-26T17:39:35Z
attribute NC_GLOBAL date_modified String 2019-03-26T16:30:28Z
attribute NC_GLOBAL defaultDataQuery String &time<now
attribute NC_GLOBAL doi String 10.1575/1912/bco-dmo.709880.1
attribute NC_GLOBAL infoUrl String https://www.bco-dmo.org/dataset/709880 (external link)
attribute NC_GLOBAL institution String BCO-DMO
attribute NC_GLOBAL keywords String A3_S_fitti, B2_S_psygmophilium, bco, bco-dmo, biological, chemical, condition, d1a, D1a_S_trenchii, data, dataset, dmo, erddap, fitti, genet, management, month, month_sampled, number, oceanography, office, preliminary, psygmophilium, sample, sample_number, sampled, trenchii
attribute NC_GLOBAL license String https://www.bco-dmo.org/dataset/709880/license (external link)
attribute NC_GLOBAL metadata_source String https://www.bco-dmo.org/api/dataset/709880 (external link)
attribute NC_GLOBAL param_mapping String {'709880': {}}
attribute NC_GLOBAL parameter_source String https://www.bco-dmo.org/mapserver/dataset/709880/parameters (external link)
attribute NC_GLOBAL people_0_affiliation String Florida International University
attribute NC_GLOBAL people_0_affiliation_acronym String FIU
attribute NC_GLOBAL people_0_person_name String Dr Mauricio Rodriguez-Lanetty
attribute NC_GLOBAL people_0_person_nid String 516423
attribute NC_GLOBAL people_0_role String Principal Investigator
attribute NC_GLOBAL people_0_role_type String originator
attribute NC_GLOBAL people_1_affiliation String University of Miami Rosenstiel School of Marine and Atmospheric Science
attribute NC_GLOBAL people_1_affiliation_acronym String UM-RSMAS
attribute NC_GLOBAL people_1_person_name String Dr Diego Lirman
attribute NC_GLOBAL people_1_person_nid String 637751
attribute NC_GLOBAL people_1_role String Co-Principal Investigator
attribute NC_GLOBAL people_1_role_type String originator
attribute NC_GLOBAL people_2_affiliation String Florida International University
attribute NC_GLOBAL people_2_affiliation_acronym String FIU
attribute NC_GLOBAL people_2_person_name String Dr Laurie Richardson
attribute NC_GLOBAL people_2_person_nid String 637746
attribute NC_GLOBAL people_2_role String Co-Principal Investigator
attribute NC_GLOBAL people_2_role_type String originator
attribute NC_GLOBAL people_3_affiliation String Woods Hole Oceanographic Institution
attribute NC_GLOBAL people_3_affiliation_acronym String WHOI BCO-DMO
attribute NC_GLOBAL people_3_person_name String Hannah Ake
attribute NC_GLOBAL people_3_person_nid String 650173
attribute NC_GLOBAL people_3_role String BCO-DMO Data Manager
attribute NC_GLOBAL people_3_role_type String related
attribute NC_GLOBAL project String EMUCoReS
attribute NC_GLOBAL projects_0_acronym String EMUCoReS
attribute NC_GLOBAL projects_0_description String Description from NSF award abstract:
Coral reefs are among the most biologically diverse and economically important ecosystems on the planet. However, coral reefs are in a state of global decline due to effects of climate change, disease outbreaks, and other stressors. Mass coral bleaching events, a breakdown of the association between corals and their symbiotic algae, are predicted to become more frequent and severe in response to climate change, and it is expected that subsequent disease outbreaks will become more common. Beginning in August 2014, nearly all coral species in the Florida Reef Tract have undergone severe bleaching, in some cases followed by coral mortality and/or disease outbreaks. This widespread, thermal-induced event presents a unique time-sensitive opportunity to explore the mechanisms underpinning the patterns of coral bleaching, disease, and recovery. The mechanisms linking patterns of bleaching, disease, mortality, and recovery remain relatively unexplored. This research will explore the influences that genotype combinations of host polyps, their algal symbionts, and associated bacterial have on bleaching/disease likelihood and recovery/mortality predisposition of coral specimens. By providing a mechanistic understanding of the processes that underlie coral bleaching and subsequent recovery this research will contribute to measures in support of preserving this invaluable natural resource. The study will further involve students from diverse backgrounds as well as provide project internship opportunities for high school students. A web based radio blog will disseminate project results and other relevant developments to the broad audiences
Mass coral bleaching events are predicted to become more frequent and severe in response to climate change, and it is expected that subsequent disease outbreaks will become more common. The lack of a baseline genetic datasets for coral holobionts prior to previous natural bleaching events has hindered our understanding of recovery patterns and physiological tolerance to thermal stress, also known as coral bleaching. An extensive pre-thermal stress baseline of genotypic identity of coral hosts, Symbiodinium, and associated bacterial community offers a unique opportunity to analyze changes associated with current bleaching event along the Florida coastline and to document holobiont compositions most and least resistant/resilient to bleaching and disease. Repeated sampling of the same coral colonies will allow the investigators to compare holobiont composition before, during and after bleaching of both healthy and diseased individuals. This bleaching event is a time-sensitive natural experiment to examine the dynamics of microbes (Symbiodinium and bacteria) associated with affected colonies, including their potential influence on disease susceptibility and resistance of reef corals. This effort would constitute the first time that high throughput sequencing of coral, Symbiodinium endosymbiont, and the coral-associated bacterial community genotypes are together used to explain patterns of disease, recovery, and mortality following natural bleaching. This study will likely change the way investigators study emerging wasting diseases of keystone species that define marine benthic communities.
attribute NC_GLOBAL projects_0_end_date String 2016-11
attribute NC_GLOBAL projects_0_geolocation String Florida Reef Tract (24.868358, -80.643495)
attribute NC_GLOBAL projects_0_name String RAPID: A hyper-thermal anomaly in the Florida Reef Tract: An opportunity to explore the mechanisms underpinning patterns of coral bleaching and disease
attribute NC_GLOBAL projects_0_project_nid String 637743
attribute NC_GLOBAL projects_0_start_date String 2014-12
attribute NC_GLOBAL publisher_name String Biological and Chemical Oceanographic Data Management Office (BCO-DMO)
attribute NC_GLOBAL publisher_type String institution
attribute NC_GLOBAL sourceUrl String (local files)
attribute NC_GLOBAL standard_name_vocabulary String CF Standard Name Table v55
attribute NC_GLOBAL summary String Bleaching, disease, and mortality on A. cervicornis individuals in Elliot Key, Florida during 2014 and 2015 (EMUCoReS project)
attribute NC_GLOBAL title String Bleaching, disease, and mortality on A. cervicornis individuals in Elliot Key, Florida during 2014 and 2015 (EMUCoReS project)
attribute NC_GLOBAL version String 1
attribute NC_GLOBAL xml_source String osprey2erddap.update_xml() v1.3
variable month_sampled   String  
attribute month_sampled bcodmo_name String month
attribute month_sampled description String Month sampled: September 14; March 15; October 15
attribute month_sampled long_name String Month Sampled
attribute month_sampled nerc_identifier String https://vocab.nerc.ac.uk/collection/P01/current/MNTHXXXX/ (external link)
attribute month_sampled units String unitless
variable genet   String  
attribute genet bcodmo_name String sample
attribute genet description String Asexual clone identifier; A through X
attribute genet long_name String Genet
attribute genet nerc_identifier String https://vocab.nerc.ac.uk/collection/P02/current/ACYC/ (external link)
attribute genet units String unitless
variable condition   String  
attribute condition bcodmo_name String sample_descrip
attribute condition description String Apparent health of coral; healthy or bleached
attribute condition long_name String Condition
attribute condition units String unitless
variable sample_number   byte  
attribute sample_number _FillValue byte 127
attribute sample_number actual_range byte 1, 80
attribute sample_number bcodmo_name String sample
attribute sample_number colorBarMaximum double 100.0
attribute sample_number colorBarMinimum double 0.0
attribute sample_number description String DNA tube number; 1-80
attribute sample_number long_name String Sample Number
attribute sample_number nerc_identifier String https://vocab.nerc.ac.uk/collection/P02/current/ACYC/ (external link)
attribute sample_number units String unitless
variable A3_S_fitti   double  
attribute A3_S_fitti _FillValue double NaN
attribute A3_S_fitti actual_range double 99.30868614, 100.0
attribute A3_S_fitti bcodmo_name String cover_pcent
attribute A3_S_fitti description String Percent of reads from S. fitti
attribute A3_S_fitti long_name String A3 S Fitti
attribute A3_S_fitti units String percent
variable B2_S_psygmophilium   double  
attribute B2_S_psygmophilium _FillValue double NaN
attribute B2_S_psygmophilium actual_range double 0.0, 0.691313859
attribute B2_S_psygmophilium bcodmo_name String cover_pcent
attribute B2_S_psygmophilium description String Percent of reads from S. psygmophilium
attribute B2_S_psygmophilium long_name String B2 S Psygmophilium
attribute B2_S_psygmophilium units String percent
variable D1a_S_trenchii   double  
attribute D1a_S_trenchii _FillValue double NaN
attribute D1a_S_trenchii actual_range double 0.0, 0.087270914
attribute D1a_S_trenchii bcodmo_name String cover_pcent
attribute D1a_S_trenchii description String Percent of reads from S. trenchii
attribute D1a_S_trenchii long_name String D1a S Trenchii
attribute D1a_S_trenchii units String percent

The information in the table above is also available in other file formats (.csv, .htmlTable, .itx, .json, .jsonlCSV1, .jsonlCSV, .jsonlKVP, .mat, .nc, .nccsv, .tsv, .xhtml) via a RESTful web service.

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