ERDDAP > info > bcodmo_dataset_709880

Grid DAP Data	Sub- set	Table DAP Data	Make A Graph	W M S	Source Data Files	Acces- sible	Title	Sum- mary	FGDC, ISO, Metadata	Back- ground Info	RSS	E mail	Institution	Dataset ID
		data	graph		files	public	[Visual monitoring of A. cervicornis] - Bleaching, disease, and mortality on A. cervicornis individuals in Elliot Key, Florida during 2014 and 2015 (EMUCoReS project) (RAPID: A hyper- thermal anomaly in the Florida Reef Tract: An opportunity to explore the mechanisms underpinning patterns of coral bleaching and disease)		I   M	background			BCO-DMO	bcodmo_dataset_709880

The Dataset's Variables and Attributes

Row Type	Variable Name	Attribute Name	Data Type	Value
attribute	NC_GLOBAL	access_formats	String	.htmlTable,.csv,.json,.mat,.nc,.tsv
attribute	NC_GLOBAL	acquisition_description	String	At indicated dates, individual corals (ramets) were visually assessed for bleaching, disease, and mortality. Corals were determined to be diseased by\u00a0White\u00a0band (white) when there was a band of white tissue traversing the branches progressing from the bottom to the top of the colony. Corals were identified as diseased with Rapid Tissue Loss (RTL) when gently fanning by hand resulted in the dissociation of tissue from the coral's skeleton. Mortality was noted as\u00a0 no (no mortality observed), partial (the minority of the colony was no longer covered with live tissue), mostly dead (the majority of the colony was no longer covered with live tissue), or dead (no observable tissue) Bleaching was noted for those corals paling or entirely lacking in pigmentation.\u00a0 A reference color card (Seibeck et al., 2006) was used as a pigmentation reference. The normal level of pigmentation was C3 or darker (not bleached). Colors lighter than C3 were considered bleached.
attribute	NC_GLOBAL	awards_0_award_nid	String	637742
attribute	NC_GLOBAL	awards_0_award_number	String	OCE-1503483
attribute	NC_GLOBAL	awards_0_data_url	String	http://www.nsf.gov/awardsearch/showAward.do?AwardNumber=1503483
attribute	NC_GLOBAL	awards_0_funder_name	String	NSF Division of Ocean Sciences
attribute	NC_GLOBAL	awards_0_funding_acronym	String	NSF OCE
attribute	NC_GLOBAL	awards_0_funding_source_nid	String	355
attribute	NC_GLOBAL	awards_0_program_manager	String	David L. Garrison
attribute	NC_GLOBAL	awards_0_program_manager_nid	String	50534
attribute	NC_GLOBAL	awards_1_award_nid	String	637749
attribute	NC_GLOBAL	awards_1_award_number	String	OCE-1503430
attribute	NC_GLOBAL	awards_1_data_url	String	http://www.nsf.gov/awardsearch/showAward.do?AwardNumber=1503430
attribute	NC_GLOBAL	awards_1_funder_name	String	NSF Division of Ocean Sciences
attribute	NC_GLOBAL	awards_1_funding_acronym	String	NSF OCE
attribute	NC_GLOBAL	awards_1_funding_source_nid	String	355
attribute	NC_GLOBAL	awards_1_program_manager	String	David L. Garrison
attribute	NC_GLOBAL	awards_1_program_manager_nid	String	50534
attribute	NC_GLOBAL	cdm_data_type	String	Other
attribute	NC_GLOBAL	comment	String	Visual Monitoring of A. cervicornis M. Rodriguez-Lanetty, D. Lirman, and L. Richardson, PIs Version 26 July 2017
attribute	NC_GLOBAL	Conventions	String	COARDS, CF-1.6, ACDD-1.3
attribute	NC_GLOBAL	creator_email	String	info at bco-dmo.org
attribute	NC_GLOBAL	creator_name	String	BCO-DMO
attribute	NC_GLOBAL	creator_type	String	institution
attribute	NC_GLOBAL	creator_url	String	https://www.bco-dmo.org/
attribute	NC_GLOBAL	data_source	String	extract_data_as_tsv version 2.3 19 Dec 2019
attribute	NC_GLOBAL	date_created	String	2017-07-26T17:39:35Z
attribute	NC_GLOBAL	date_modified	String	2019-03-26T16:30:28Z
attribute	NC_GLOBAL	defaultDataQuery	String	&time<now
attribute	NC_GLOBAL	doi	String	10.1575/1912/bco-dmo.709880.1
attribute	NC_GLOBAL	infoUrl	String	https://www.bco-dmo.org/dataset/709880
attribute	NC_GLOBAL	institution	String	BCO-DMO
attribute	NC_GLOBAL	keywords	String	A3_S_fitti, B2_S_psygmophilium, bco, bco-dmo, biological, chemical, condition, d1a, D1a_S_trenchii, data, dataset, dmo, erddap, fitti, genet, management, month, month_sampled, number, oceanography, office, preliminary, psygmophilium, sample, sample_number, sampled, trenchii
attribute	NC_GLOBAL	license	String	https://www.bco-dmo.org/dataset/709880/license
attribute	NC_GLOBAL	metadata_source	String	https://www.bco-dmo.org/api/dataset/709880
attribute	NC_GLOBAL	param_mapping	String	{'709880': {}}
attribute	NC_GLOBAL	parameter_source	String	https://www.bco-dmo.org/mapserver/dataset/709880/parameters
attribute	NC_GLOBAL	people_0_affiliation	String	Florida International University
attribute	NC_GLOBAL	people_0_affiliation_acronym	String	FIU
attribute	NC_GLOBAL	people_0_person_name	String	Dr Mauricio Rodriguez-Lanetty
attribute	NC_GLOBAL	people_0_person_nid	String	516423
attribute	NC_GLOBAL	people_0_role	String	Principal Investigator
attribute	NC_GLOBAL	people_0_role_type	String	originator
attribute	NC_GLOBAL	people_1_affiliation	String	University of Miami Rosenstiel School of Marine and Atmospheric Science
attribute	NC_GLOBAL	people_1_affiliation_acronym	String	UM-RSMAS
attribute	NC_GLOBAL	people_1_person_name	String	Dr Diego Lirman
attribute	NC_GLOBAL	people_1_person_nid	String	637751
attribute	NC_GLOBAL	people_1_role	String	Co-Principal Investigator
attribute	NC_GLOBAL	people_1_role_type	String	originator
attribute	NC_GLOBAL	people_2_affiliation	String	Florida International University
attribute	NC_GLOBAL	people_2_affiliation_acronym	String	FIU
attribute	NC_GLOBAL	people_2_person_name	String	Dr Laurie Richardson
attribute	NC_GLOBAL	people_2_person_nid	String	637746
attribute	NC_GLOBAL	people_2_role	String	Co-Principal Investigator
attribute	NC_GLOBAL	people_2_role_type	String	originator
attribute	NC_GLOBAL	people_3_affiliation	String	Woods Hole Oceanographic Institution
attribute	NC_GLOBAL	people_3_affiliation_acronym	String	WHOI BCO-DMO
attribute	NC_GLOBAL	people_3_person_name	String	Hannah Ake
attribute	NC_GLOBAL	people_3_person_nid	String	650173
attribute	NC_GLOBAL	people_3_role	String	BCO-DMO Data Manager
attribute	NC_GLOBAL	people_3_role_type	String	related
attribute	NC_GLOBAL	project	String	EMUCoReS
attribute	NC_GLOBAL	projects_0_acronym	String	EMUCoReS
attribute	NC_GLOBAL	projects_0_description	String	Description from NSF award abstract: Coral reefs are among the most biologically diverse and economically important ecosystems on the planet. However, coral reefs are in a state of global decline due to effects of climate change, disease outbreaks, and other stressors. Mass coral bleaching events, a breakdown of the association between corals and their symbiotic algae, are predicted to become more frequent and severe in response to climate change, and it is expected that subsequent disease outbreaks will become more common. Beginning in August 2014, nearly all coral species in the Florida Reef Tract have undergone severe bleaching, in some cases followed by coral mortality and/or disease outbreaks. This widespread, thermal-induced event presents a unique time-sensitive opportunity to explore the mechanisms underpinning the patterns of coral bleaching, disease, and recovery. The mechanisms linking patterns of bleaching, disease, mortality, and recovery remain relatively unexplored. This research will explore the influences that genotype combinations of host polyps, their algal symbionts, and associated bacterial have on bleaching/disease likelihood and recovery/mortality predisposition of coral specimens. By providing a mechanistic understanding of the processes that underlie coral bleaching and subsequent recovery this research will contribute to measures in support of preserving this invaluable natural resource. The study will further involve students from diverse backgrounds as well as provide project internship opportunities for high school students. A web based radio blog will disseminate project results and other relevant developments to the broad audiences Mass coral bleaching events are predicted to become more frequent and severe in response to climate change, and it is expected that subsequent disease outbreaks will become more common. The lack of a baseline genetic datasets for coral holobionts prior to previous natural bleaching events has hindered our understanding of recovery patterns and physiological tolerance to thermal stress, also known as coral bleaching. An extensive pre-thermal stress baseline of genotypic identity of coral hosts, Symbiodinium, and associated bacterial community offers a unique opportunity to analyze changes associated with current bleaching event along the Florida coastline and to document holobiont compositions most and least resistant/resilient to bleaching and disease. Repeated sampling of the same coral colonies will allow the investigators to compare holobiont composition before, during and after bleaching of both healthy and diseased individuals. This bleaching event is a time-sensitive natural experiment to examine the dynamics of microbes (Symbiodinium and bacteria) associated with affected colonies, including their potential influence on disease susceptibility and resistance of reef corals. This effort would constitute the first time that high throughput sequencing of coral, Symbiodinium endosymbiont, and the coral-associated bacterial community genotypes are together used to explain patterns of disease, recovery, and mortality following natural bleaching. This study will likely change the way investigators study emerging wasting diseases of keystone species that define marine benthic communities.
attribute	NC_GLOBAL	projects_0_end_date	String	2016-11
attribute	NC_GLOBAL	projects_0_geolocation	String	Florida Reef Tract (24.868358, -80.643495)
attribute	NC_GLOBAL	projects_0_name	String	RAPID: A hyper-thermal anomaly in the Florida Reef Tract: An opportunity to explore the mechanisms underpinning patterns of coral bleaching and disease
attribute	NC_GLOBAL	projects_0_project_nid	String	637743
attribute	NC_GLOBAL	projects_0_start_date	String	2014-12
attribute	NC_GLOBAL	publisher_name	String	Biological and Chemical Oceanographic Data Management Office (BCO-DMO)
attribute	NC_GLOBAL	publisher_type	String	institution
attribute	NC_GLOBAL	sourceUrl	String	(local files)
attribute	NC_GLOBAL	standard_name_vocabulary	String	CF Standard Name Table v55
attribute	NC_GLOBAL	summary	String	Bleaching, disease, and mortality on A. cervicornis individuals in Elliot Key, Florida during 2014 and 2015 (EMUCoReS project)
attribute	NC_GLOBAL	title	String	[Visual monitoring of A. cervicornis] - Bleaching, disease, and mortality on A. cervicornis individuals in Elliot Key, Florida during 2014 and 2015 (EMUCoReS project) (RAPID: A hyper-thermal anomaly in the Florida Reef Tract: An opportunity to explore the mechanisms underpinning patterns of coral bleaching and disease)
attribute	NC_GLOBAL	version	String	1
attribute	NC_GLOBAL	xml_source	String	osprey2erddap.update_xml() v1.3
variable	month_sampled		String
attribute	month_sampled	bcodmo_name	String	month
attribute	month_sampled	description	String	Month sampled: September 14; March 15; October 15
attribute	month_sampled	long_name	String	Month Sampled
attribute	month_sampled	nerc_identifier	String	https://vocab.nerc.ac.uk/collection/P01/current/MNTHXXXX/
attribute	month_sampled	units	String	unitless
variable	genet		String
attribute	genet	bcodmo_name	String	sample
attribute	genet	description	String	Asexual clone identifier; A through X
attribute	genet	long_name	String	Genet
attribute	genet	nerc_identifier	String	https://vocab.nerc.ac.uk/collection/P02/current/ACYC/
attribute	genet	units	String	unitless
variable	condition		String
attribute	condition	bcodmo_name	String	sample_descrip
attribute	condition	description	String	Apparent health of coral; healthy or bleached
attribute	condition	long_name	String	Condition
attribute	condition	units	String	unitless
variable	sample_number		byte
attribute	sample_number	_FillValue	byte	127
attribute	sample_number	actual_range	byte	1, 80
attribute	sample_number	bcodmo_name	String	sample
attribute	sample_number	colorBarMaximum	double	100.0
attribute	sample_number	colorBarMinimum	double	0.0
attribute	sample_number	description	String	DNA tube number; 1-80
attribute	sample_number	long_name	String	Sample Number
attribute	sample_number	nerc_identifier	String	https://vocab.nerc.ac.uk/collection/P02/current/ACYC/
attribute	sample_number	units	String	unitless
variable	A3_S_fitti		double
attribute	A3_S_fitti	_FillValue	double	NaN
attribute	A3_S_fitti	actual_range	double	99.30868614, 100.0
attribute	A3_S_fitti	bcodmo_name	String	cover_pcent
attribute	A3_S_fitti	description	String	Percent of reads from S. fitti
attribute	A3_S_fitti	long_name	String	A3 S Fitti
attribute	A3_S_fitti	units	String	percent
variable	B2_S_psygmophilium		double
attribute	B2_S_psygmophilium	_FillValue	double	NaN
attribute	B2_S_psygmophilium	actual_range	double	0.0, 0.691313859
attribute	B2_S_psygmophilium	bcodmo_name	String	cover_pcent
attribute	B2_S_psygmophilium	description	String	Percent of reads from S. psygmophilium
attribute	B2_S_psygmophilium	long_name	String	B2 S Psygmophilium
attribute	B2_S_psygmophilium	units	String	percent
variable	D1a_S_trenchii		double
attribute	D1a_S_trenchii	_FillValue	double	NaN
attribute	D1a_S_trenchii	actual_range	double	0.0, 0.087270914
attribute	D1a_S_trenchii	bcodmo_name	String	cover_pcent
attribute	D1a_S_trenchii	description	String	Percent of reads from S. trenchii
attribute	D1a_S_trenchii	long_name	String	D1a S Trenchii
attribute	D1a_S_trenchii	units	String	percent

The information in the table above is also available in other file formats (.csv, .htmlTable, .itx, .json, .jsonlCSV1, .jsonlCSV, .jsonlKVP, .mat, .nc, .nccsv, .tsv, .xhtml) via a RESTful web service.