ERDDAP > info > bcodmo_dataset_738228

Grid DAP Data	Sub- set	Table DAP Data	Make A Graph	W M S	Source Data Files	Acces- sible	Title	Sum- mary	FGDC, ISO, Metadata	Back- ground Info	RSS	E mail	Institution	Dataset ID
		data	graph		files	public	[Symbiodinium genotype responses to Nitrogen] - Traits of five Symbiodinium genotypes measured at three different nitrogen levels (RUI: Collaborative Research: Genetic variation as a driver of host and symbiont response to increased temperature on coral reefs)		I   M	background			BCO-DMO	bcodmo_dataset_738228

The Dataset's Variables and Attributes

Row Type	Variable Name	Attribute Name	Data Type	Value
attribute	NC_GLOBAL	access_formats	String	.htmlTable,.csv,.json,.mat,.nc,.tsv
attribute	NC_GLOBAL	acquisition_description	String	Cultures initially isolated from\u00a0Antillogorgia\u00a0bipinnata\u00a0coral colonies collected at Looe Key ( N 24\u00b0 32.973' W 81\u00b0 22.849; cultures 08-0689.4, 08-0689.6, 08-0691.1) in 2008 and the middle keys new Tennessee Reef (N 24\u00b0 45.150'\u00a0 W 81\u00b0 45.275'; cultures 13-121, 13-126) in 2013. Culture isolations were performed in the Coffroth lab, University at Buffalo. Physiological measurements were measured in the terHorst lab, California State University, Northridge. Quantum yield and fluorescence\u00a0yield\u00a0were measured in an AquaPen-C (Photon Systems Instruments). Chlorophyll concentration was quantified in a Triology Fluorometer. Culture growth rates were quantified by visual counts under a microscope at the beginning and end of the experiment. See Bayliss et al (2019) for further details and results.
attribute	NC_GLOBAL	awards_0_award_nid	String	632537
attribute	NC_GLOBAL	awards_0_award_number	String	OCE-1559105
attribute	NC_GLOBAL	awards_0_data_url	String	https://www.nsf.gov/awardsearch/showAward?AWD_ID=1559105
attribute	NC_GLOBAL	awards_0_funder_name	String	NSF Division of Ocean Sciences
attribute	NC_GLOBAL	awards_0_funding_acronym	String	NSF OCE
attribute	NC_GLOBAL	awards_0_funding_source_nid	String	355
attribute	NC_GLOBAL	awards_0_program_manager	String	David L. Garrison
attribute	NC_GLOBAL	awards_0_program_manager_nid	String	50534
attribute	NC_GLOBAL	cdm_data_type	String	Other
attribute	NC_GLOBAL	comment	String	Genotype Responses to Nitrogen Traits of five genotypes measured at three different nitrogen levels PI: C. terHorst (CSU-Northridge), M.A. Coffroth (SUNY-Buffalo) version: 2018-05-23
attribute	NC_GLOBAL	Conventions	String	COARDS, CF-1.6, ACDD-1.3
attribute	NC_GLOBAL	creator_email	String	info at bco-dmo.org
attribute	NC_GLOBAL	creator_name	String	BCO-DMO
attribute	NC_GLOBAL	creator_type	String	institution
attribute	NC_GLOBAL	creator_url	String	https://www.bco-dmo.org/
attribute	NC_GLOBAL	data_source	String	extract_data_as_tsv version 2.3 19 Dec 2019
attribute	NC_GLOBAL	date_created	String	2018-06-07T12:59:40Z
attribute	NC_GLOBAL	date_modified	String	2019-12-04T18:27:58Z
attribute	NC_GLOBAL	defaultDataQuery	String	&time<now
attribute	NC_GLOBAL	doi	String	10.1575/1912/bco-dmo.738228.1
attribute	NC_GLOBAL	infoUrl	String	https://www.bco-dmo.org/dataset/738228
attribute	NC_GLOBAL	institution	String	BCO-DMO
attribute	NC_GLOBAL	instruments_0_acronym	String	Fluorometer
attribute	NC_GLOBAL	instruments_0_dataset_instrument_description	String	Used to measure chlorophyll concentrations.
attribute	NC_GLOBAL	instruments_0_dataset_instrument_nid	String	738245
attribute	NC_GLOBAL	instruments_0_description	String	A fluorometer or fluorimeter is a device used to measure parameters of fluorescence: its intensity and wavelength distribution of emission spectrum after excitation by a certain spectrum of light. The instrument is designed to measure the amount of stimulated electromagnetic radiation produced by pulses of electromagnetic radiation emitted into a water sample or in situ.
attribute	NC_GLOBAL	instruments_0_instrument_external_identifier	String	https://vocab.nerc.ac.uk/collection/L05/current/113/
attribute	NC_GLOBAL	instruments_0_instrument_name	String	Fluorometer
attribute	NC_GLOBAL	instruments_0_instrument_nid	String	484
attribute	NC_GLOBAL	instruments_0_supplied_name	String	Trilogy Laboratory Fluorometer
attribute	NC_GLOBAL	instruments_1_acronym	String	Fluorometer
attribute	NC_GLOBAL	instruments_1_dataset_instrument_description	String	Used to measure quantum yield and fluorescence yield.
attribute	NC_GLOBAL	instruments_1_dataset_instrument_nid	String	783492
attribute	NC_GLOBAL	instruments_1_description	String	A fluorometer or fluorimeter is a device used to measure parameters of fluorescence: its intensity and wavelength distribution of emission spectrum after excitation by a certain spectrum of light. The instrument is designed to measure the amount of stimulated electromagnetic radiation produced by pulses of electromagnetic radiation emitted into a water sample or in situ.
attribute	NC_GLOBAL	instruments_1_instrument_external_identifier	String	https://vocab.nerc.ac.uk/collection/L05/current/113/
attribute	NC_GLOBAL	instruments_1_instrument_name	String	Fluorometer
attribute	NC_GLOBAL	instruments_1_instrument_nid	String	484
attribute	NC_GLOBAL	instruments_1_supplied_name	String	AquaPen-C (Photon Systems Instruments)
attribute	NC_GLOBAL	instruments_2_dataset_instrument_description	String	Used to count cells for growth rate calculations.
attribute	NC_GLOBAL	instruments_2_dataset_instrument_nid	String	783493
attribute	NC_GLOBAL	instruments_2_description	String	Instruments that generate enlarged images of samples using the phenomena of fluorescence and phosphorescence instead of, or in addition to, reflection and absorption of visible light. Includes conventional and inverted instruments.
attribute	NC_GLOBAL	instruments_2_instrument_external_identifier	String	https://vocab.nerc.ac.uk/collection/L05/current/LAB06/
attribute	NC_GLOBAL	instruments_2_instrument_name	String	Microscope-Fluorescence
attribute	NC_GLOBAL	instruments_2_instrument_nid	String	695
attribute	NC_GLOBAL	instruments_2_supplied_name	String	microscope
attribute	NC_GLOBAL	keywords	String	bco, bco-dmo, biological, chemical, chemistry, Chla, chlapercell, chlorophyll, chlorophyll-a, concentration, concentration_of_chlorophyll_in_sea_water, data, dataset, dmo, earth, Earth Science > Oceans > Ocean Chemistry > Chlorophyll, erddap, genotype, growthrate, lncells, management, ntreatment, ocean, oceanography, oceans, office, preliminary, science, sea, seawater, vfl, water
attribute	NC_GLOBAL	keywords_vocabulary	String	GCMD Science Keywords
attribute	NC_GLOBAL	license	String	https://www.bco-dmo.org/dataset/738228/license
attribute	NC_GLOBAL	metadata_source	String	https://www.bco-dmo.org/api/dataset/738228
attribute	NC_GLOBAL	param_mapping	String	{'738228': {}}
attribute	NC_GLOBAL	parameter_source	String	https://www.bco-dmo.org/mapserver/dataset/738228/parameters
attribute	NC_GLOBAL	people_0_affiliation	String	California State University Northridge
attribute	NC_GLOBAL	people_0_affiliation_acronym	String	CSU-Northridge
attribute	NC_GLOBAL	people_0_person_name	String	Casey terHorst
attribute	NC_GLOBAL	people_0_person_nid	String	632541
attribute	NC_GLOBAL	people_0_role	String	Principal Investigator
attribute	NC_GLOBAL	people_0_role_type	String	originator
attribute	NC_GLOBAL	people_1_affiliation	String	State University of New York at Buffalo
attribute	NC_GLOBAL	people_1_affiliation_acronym	String	SUNY Buffalo
attribute	NC_GLOBAL	people_1_person_name	String	Mary Alice Coffroth
attribute	NC_GLOBAL	people_1_person_nid	String	472488
attribute	NC_GLOBAL	people_1_role	String	Co-Principal Investigator
attribute	NC_GLOBAL	people_1_role_type	String	originator
attribute	NC_GLOBAL	people_2_affiliation	String	Woods Hole Oceanographic Institution
attribute	NC_GLOBAL	people_2_affiliation_acronym	String	WHOI BCO-DMO
attribute	NC_GLOBAL	people_2_person_name	String	Nancy Copley
attribute	NC_GLOBAL	people_2_person_nid	String	50396
attribute	NC_GLOBAL	people_2_role	String	BCO-DMO Data Manager
attribute	NC_GLOBAL	people_2_role_type	String	related
attribute	NC_GLOBAL	project	String	Host Symbiont Temp Response
attribute	NC_GLOBAL	projects_0_acronym	String	Host Symbiont Temp Response
attribute	NC_GLOBAL	projects_0_description	String	Description from NSF award abstract: On coral reefs, mutualisms with single celled algae (Symbiodinium) and reef species literally and figuratively form the foundation of reef ecosystems. Coral reefs are among the most threatened ecosystems under a changing climate and are rapidly declining due to increasing levels of environmental stress, namely increased temperatures. Climate change is resulting in even warmer ocean temperatures that threaten associations between Symbiodinium and their hosts. In this project the investigators examine the genetic diversity of Symbiodinium and the potential for this important species to evolve in response to temperature. The project will also address whether the ecological and evolutionary dynamics of the Symbiodinium population affect the performance of their host. If so, this suggests that the evolution of microscopic organisms with short generation times could confer adaptation to longer-lived host species on ecologically and economically vital coral reefs. Given that diversity is already being lost on many reefs, considering how evolutionary changes in Symbiodinium will affect reef species is crucial for predicting the responses of reefs to future climate change. This project provides training for two graduate students and several undergraduates at a Hispanic-serving institution. This work includes outreach to the students and the general public through the Aquarium of Niagara, local K-12 schools, and web-based education modules. The effects of evolution on contemporary ecological processes are at the forefront of research in evolutionary ecology. This project will answer the call for experiments elucidating the effects of genetic variation in Symbiodinium performance and the effect on the response of the holobiont (host and symbiont) to increased temperature. These experiments examine the effects of temperature through both ecological and evolutionary mechanisms and will determine the relative importance of adaptation and acclimatization in replicated experimental populations. The investigators will examine how genetic variation within a species (Symbiodinium antillogorgium) affects symbiont performance in culture and in the host and how this affects the response of the holobiont to increased temperature. Further, the project examines whether holobiont response to increased temperature associated with climate change depends on particular GxG host-symbiont combinations. Moreover, the investigators will examine the effects of symbiont history on mutualist hosts, which have been largely ignored in eco-evolutionary studies. These experiments provide a first step in predicting whether invertebrate hosts on coral reefs will respond to global change via adaptation of their symbionts.
attribute	NC_GLOBAL	projects_0_end_date	String	2020-03
attribute	NC_GLOBAL	projects_0_geolocation	String	Florida Keys, Caribbean
attribute	NC_GLOBAL	projects_0_name	String	RUI: Collaborative Research: Genetic variation as a driver of host and symbiont response to increased temperature on coral reefs
attribute	NC_GLOBAL	projects_0_project_nid	String	632538
attribute	NC_GLOBAL	projects_0_start_date	String	2016-04
attribute	NC_GLOBAL	publisher_name	String	Biological and Chemical Oceanographic Data Management Office (BCO-DMO)
attribute	NC_GLOBAL	publisher_type	String	institution
attribute	NC_GLOBAL	sourceUrl	String	(local files)
attribute	NC_GLOBAL	standard_name_vocabulary	String	CF Standard Name Table v55
attribute	NC_GLOBAL	summary	String	Replicates of each Symbiodinium genotype were grown in low (25mg/L), medium (75mg/L), or high (150mg/L) nitrogen environments, after which were measured physiological parameters, including the number of cells, quantum yield, variable fluorescence, and chlorophyll content.
attribute	NC_GLOBAL	title	String	[Symbiodinium genotype responses to Nitrogen] - Traits of five Symbiodinium genotypes measured at three different nitrogen levels (RUI: Collaborative Research: Genetic variation as a driver of host and symbiont response to increased temperature on coral reefs)
attribute	NC_GLOBAL	version	String	1
attribute	NC_GLOBAL	xml_source	String	osprey2erddap.update_xml() v1.3
variable	Genotype		String
attribute	Genotype	bcodmo_name	String	sample
attribute	Genotype	description	String	Genetic idenetifier
attribute	Genotype	long_name	String	Genotype
attribute	Genotype	nerc_identifier	String	https://vocab.nerc.ac.uk/collection/P02/current/ACYC/
attribute	Genotype	units	String	unitless
variable	Ntreatment		String
attribute	Ntreatment	bcodmo_name	String	treatment
attribute	Ntreatment	description	String	Nitrogen level
attribute	Ntreatment	long_name	String	Ntreatment
attribute	Ntreatment	units	String	unitless
variable	Growthrate		float
attribute	Growthrate	_FillValue	float	NaN
attribute	Growthrate	actual_range	float	0.0633, 0.3055
attribute	Growthrate	bcodmo_name	String	growth
attribute	Growthrate	description	String	Population growth rate
attribute	Growthrate	long_name	String	Growthrate
attribute	Growthrate	units	String	cells/day
variable	QY		float
attribute	QY	_FillValue	float	NaN
attribute	QY	actual_range	float	0.11, 0.52
attribute	QY	bcodmo_name	String	Fv2Fm
attribute	QY	description	String	Quantum Yield
attribute	QY	long_name	String	QY
attribute	QY	units	String	unitless ratio
variable	Vfl		short
attribute	Vfl	_FillValue	short	32767
attribute	Vfl	actual_range	short	354, 11150
attribute	Vfl	bcodmo_name	String	Fv2Fm
attribute	Vfl	description	String	Variable Fluorescence
attribute	Vfl	long_name	String	VFL
attribute	Vfl	units	String	unitless
variable	Chla		double
attribute	Chla	_FillValue	double	NaN
attribute	Chla	actual_range	double	4216.01, 3374874.75
attribute	Chla	bcodmo_name	String	chlorophyll a
attribute	Chla	colorBarMaximum	double	30.0
attribute	Chla	colorBarMinimum	double	0.03
attribute	Chla	colorBarScale	String	Log
attribute	Chla	description	String	Total Chlorophyll per sample
attribute	Chla	long_name	String	Concentration Of Chlorophyll In Sea Water
attribute	Chla	nerc_identifier	String	https://vocab.nerc.ac.uk/collection/P01/current/CPHLHPP1/
attribute	Chla	units	String	Relative Fluorescence Units
variable	Chlapercell		double
attribute	Chlapercell	_FillValue	double	NaN
attribute	Chlapercell	actual_range	double	0.023447099, 0.583635927
attribute	Chlapercell	bcodmo_name	String	chlorophyll a
attribute	Chlapercell	description	String	Chlorophll per cell
attribute	Chlapercell	long_name	String	Chlapercell
attribute	Chlapercell	nerc_identifier	String	https://vocab.nerc.ac.uk/collection/P01/current/CPHLHPP1/
attribute	Chlapercell	units	String	Relative Fluorescence Units
variable	lncells		double
attribute	lncells	_FillValue	double	NaN
attribute	lncells	actual_range	double	10.81977828, 15.91842446
attribute	lncells	bcodmo_name	String	cell_concentration
attribute	lncells	description	String	Log of Cell Count
attribute	lncells	long_name	String	Lncells
attribute	lncells	units	String	Ln(#cells)

The information in the table above is also available in other file formats (.csv, .htmlTable, .itx, .json, .jsonlCSV1, .jsonlCSV, .jsonlKVP, .mat, .nc, .nccsv, .tsv, .xhtml) via a RESTful web service.