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   set  data   graph     files  public Data from 120 parent-offspring matches identified in fish on the Belizean Barrier Reef in
2013.
   ?     I   M   background (external link) RSS BCO-DMO bcodmo_dataset_738704

The Dataset's Variables and Attributes

Row Type Variable Name Attribute Name Data Type Value
attribute NC_GLOBAL access_formats String .htmlTable,.csv,.json,.mat,.nc,.tsv
attribute NC_GLOBAL acquisition_description String We surveyed a 41 km-long transect of the Belize Barrier reef, centered at
Carrie Bow Cay, by SCUBA to conduct a genetic parentage study of the reef fish
Elactinus lori. All underwater sampling was conducted using SCUBA at an
average (\u00b1SD) depth of 16.03 \u00b1 2.19 m. A waypoint was recorded from
the boat at the beginning and end of every collection dive, with the midpoint
of each dive taken as the location for all individuals sampled on that dive.
To collect settlers, we sampled ~ 100 individuals every kilometer. Individuals
were collected from the outsides of sponges using slurp guns and placed them
in plastic bags. At the surface, settlers were anesthetized with MS-222. For
adults, we collected non-lethal tissue samples at three regions along the
transect (n \u2248 1,000 per region). Each adult was collected with a slurp
gun and restrained in a net; we took a small tissue sample from the caudal fin
using scissors. All tissue was stored in 95% EtOH. At each adult collection
sponge, we also measured: sponge depth (m, using dive computers), number of
tubes per sponge, and length of largest sponge tube (nearest cm, using a tape
measure).

Otoliths were extracted from the 120 settlers that were assigned to parents.
Otoliths were dissected, cleared of tissue, immersed in oil for 2-7 days, and
rings were counted under a 50\u00d7 oil immersion lens

Further details on all methods can be found in D\u2019Aloia et al. (2015),
PNAS.
attribute NC_GLOBAL awards_0_award_nid String 544434
attribute NC_GLOBAL awards_0_award_number String OCE-1260424
attribute NC_GLOBAL awards_0_data_url String http://www.nsf.gov/awardsearch/showAward.do?AwardNumber=1260424 (external link)
attribute NC_GLOBAL awards_0_funder_name String NSF Division of Ocean Sciences
attribute NC_GLOBAL awards_0_funding_acronym String NSF OCE
attribute NC_GLOBAL awards_0_funding_source_nid String 355
attribute NC_GLOBAL awards_0_program_manager String Dr David L. Garrison
attribute NC_GLOBAL awards_0_program_manager_nid String 50534
attribute NC_GLOBAL cdm_data_type String Other
attribute NC_GLOBAL comment String Goby Percentage
P. Buston and C. D'Aloia, PIs
Version 18 June 2018
attribute NC_GLOBAL Conventions String COARDS, CF-1.6, ACDD-1.3
attribute NC_GLOBAL creator_email String info at bco-dmo.org
attribute NC_GLOBAL creator_name String BCO-DMO
attribute NC_GLOBAL creator_type String institution
attribute NC_GLOBAL creator_url String https://www.bco-dmo.org/ (external link)
attribute NC_GLOBAL data_source String extract_data_as_tsv version 2.2d 13 Jun 2019
attribute NC_GLOBAL date_created String 2018-06-18T15:46:29Z
attribute NC_GLOBAL date_modified String 2019-06-07T15:34:31Z
attribute NC_GLOBAL defaultDataQuery String &time
attribute NC_GLOBAL doi String 10.1575/1912/bco-dmo.738704.1
attribute NC_GLOBAL geospatial_vertical_max double 23.1648
attribute NC_GLOBAL geospatial_vertical_min double 9.144
attribute NC_GLOBAL geospatial_vertical_positive String down
attribute NC_GLOBAL geospatial_vertical_units String m
attribute NC_GLOBAL infoUrl String https://www.bco-dmo.org/dataset/738704 (external link)
attribute NC_GLOBAL institution String BCO-DMO
attribute NC_GLOBAL instruments_0_dataset_instrument_description String Used to collect GPS data
attribute NC_GLOBAL instruments_0_dataset_instrument_nid String 738712
attribute NC_GLOBAL instruments_0_description String Acquires satellite signals and tracks your location.
attribute NC_GLOBAL instruments_0_instrument_name String GPS receiver
attribute NC_GLOBAL instruments_0_instrument_nid String 706037
attribute NC_GLOBAL instruments_0_supplied_name String GPSMAP 76Cx (Garmin)
attribute NC_GLOBAL keywords String bco, bco-dmo, biological, chemical, currents, data, dataset, depth, direction, distance, dmo, erddap, identifier, length, management, oceanography, office, offspring, offspring_id, origin, origin_region, parent1, parent1_id, parent2, parent2_id, pld, preliminary, region, settler, settler_pld, settler_sl, sponge, sponge_length, sponge_tubes, time, tubes, year
attribute NC_GLOBAL license String The data may be used and redistributed for free but is not intended
for legal use, since it may contain inaccuracies. Neither the data
Contributor, ERD, NOAA, nor the United States Government, nor any
of their employees or contractors, makes any warranty, express or
implied, including warranties of merchantability and fitness for a
particular purpose, or assumes any legal liability for the accuracy,
completeness, or usefulness, of this information.
attribute NC_GLOBAL metadata_source String https://www.bco-dmo.org/api/dataset/738704 (external link)
attribute NC_GLOBAL param_mapping String {'738704': {'depth': 'flag - depth'}}
attribute NC_GLOBAL parameter_source String https://www.bco-dmo.org/mapserver/dataset/738704/parameters (external link)
attribute NC_GLOBAL people_0_affiliation String Boston University
attribute NC_GLOBAL people_0_affiliation_acronym String BU
attribute NC_GLOBAL people_0_person_name String Dr Peter Buston
attribute NC_GLOBAL people_0_person_nid String 544437
attribute NC_GLOBAL people_0_role String Principal Investigator
attribute NC_GLOBAL people_0_role_type String originator
attribute NC_GLOBAL people_1_affiliation String Woods Hole Oceanographic Institution
attribute NC_GLOBAL people_1_affiliation_acronym String WHOI
attribute NC_GLOBAL people_1_person_name String Dr Cassidy C. D'Aloia
attribute NC_GLOBAL people_1_person_nid String 704789
attribute NC_GLOBAL people_1_role String Co-Principal Investigator
attribute NC_GLOBAL people_1_role_type String originator
attribute NC_GLOBAL people_2_affiliation String Boston University
attribute NC_GLOBAL people_2_affiliation_acronym String BU
attribute NC_GLOBAL people_2_person_name String Dr Peter Buston
attribute NC_GLOBAL people_2_person_nid String 544437
attribute NC_GLOBAL people_2_role String Contact
attribute NC_GLOBAL people_2_role_type String related
attribute NC_GLOBAL people_3_affiliation String Woods Hole Oceanographic Institution
attribute NC_GLOBAL people_3_affiliation_acronym String WHOI BCO-DMO
attribute NC_GLOBAL people_3_person_name String Hannah Ake
attribute NC_GLOBAL people_3_person_nid String 650173
attribute NC_GLOBAL people_3_role String BCO-DMO Data Manager
attribute NC_GLOBAL people_3_role_type String related
attribute NC_GLOBAL project String An Integrative Investigation of Population Connectivity Using a Coral Reef Fish
attribute NC_GLOBAL projects_0_acronym String Elacatinus Dispersal I
attribute NC_GLOBAL projects_0_description String Understanding the patterns, causes and consequences of larval dispersal is a major goal of 21st century marine ecology. Patterns of dispersal determine the rates of larval exchange, or connectivity, between populations. Both physical factors (e.g., water movement) and biological factors (e.g., larval behavior) cause variation in population connectivity. Population connectivity, in turn, has major consequences for all aspects of an organism's biology, from individual behavior to metapopulation dynamics, and from evolution within metapopulations to the origin and extinction of species. Further, understanding population connectivity is critical for the design of effective networks of marine reserves,�creation of�vital tools in conservation, and the development of sustainable fisheries.
Over the last decade, three methods, each of which tells something slightly different, have emerged as leading contenders to provide the greatest insights into population connectivity. First, coupled biophysical models make assumptions regarding water flow, larval behavior and ecology, to predict population connectivity. Second, indirect genetic methods use spatial distributions of allele frequencies to infer population connectivity. Third, direct genetic methods use parentage analyses, tracing recruits to specific adults, to measure population connectivity. Despite advances, lack of integration means that we do not know the predictive skill of biophysical models, or the extent to which patterns of dispersal predict spatial genetic structure. The overall objective of this proposal is to conduct an integrated investigation of population connectivity, using all three methods in one tractable system: the neon goby, Elacatinus lori, on the Belizean Barrier Reef. There are three motives for this choice of study system: i) fourteen highly polymorphic microsatellite loci have been developed, facilitating the assignment of recruits to parents using parentage analyses and the measurement of dispersal; ii) the physical oceanography of the Belizean Barrier Reef is well-studied, facilitating the development and testing of coupled biophysical models; and, iii) E. lori has a relatively small biogeographic range, facilitating analysis of the spatial distribution of allele frequencies throughout its range.
Broader Impacts. The grant will support one postdoc and two graduate students who will be trained in scientific diving, marine fieldwork, population genetics, biophysical modeling, and mathematical modeling, and will gain collaborative research experience. PIs will incorporate research findings in their courses, which cover all these topics. The grant will also broaden participation of under-represented groups by supporting six undergraduates from groups traditionally underrepresented in STEM fields. In each year of the project there will be an All Participants meeting to reinforce the network of participants. A project website will be developed, in English and Spanish, on the theme of larval dispersal and population connectivity. This will include a resource for K-12 marine science educators developed in collaboration with a marine science educator. All PIs will ensure that results are broadly disseminated to the scientific community and general public via appropriate forms of media.
attribute NC_GLOBAL projects_0_end_date String 2017-02
attribute NC_GLOBAL projects_0_geolocation String Belizean Barrier Reef System (16.803 degrees North 88.096 degrees West)
attribute NC_GLOBAL projects_0_name String An Integrative Investigation of Population Connectivity Using a Coral Reef Fish
attribute NC_GLOBAL projects_0_project_nid String 544435
attribute NC_GLOBAL projects_0_project_website String http://people.bu.edu/buston/lab/Welcome.html (external link)
attribute NC_GLOBAL projects_0_start_date String 2013-03
attribute NC_GLOBAL publisher_name String Hannah Ake
attribute NC_GLOBAL publisher_role String BCO-DMO Data Manager(s)
attribute NC_GLOBAL sourceUrl String (local files)
attribute NC_GLOBAL standard_name_vocabulary String CF Standard Name Table v29
attribute NC_GLOBAL subsetVariables String year
attribute NC_GLOBAL summary String Data from 120 parent-offspring matches identified in fish on the Belizean Barrier Reef in 2013.
attribute NC_GLOBAL title String Data from 120 parent-offspring matches identified in fish on the Belizean Barrier Reef in 2013.
attribute NC_GLOBAL version String 1
attribute NC_GLOBAL xml_source String osprey2erddap.update_xml() v1.5-beta
variable year   short  
attribute year _FillValue short 32767
attribute year actual_range short 2013, 2013
attribute year description String Year of sampling
attribute year ioos_category String Time
attribute year long_name String Year
attribute year units String unitless
variable offspring_id   String  
attribute offspring_id description String Unique ID for each offspring
attribute offspring_id ioos_category String Identifier
attribute offspring_id long_name String Offspring Id
attribute offspring_id units String unitless
variable parent1_id   String  
attribute parent1_id description String Unique ID for each parent
attribute parent1_id ioos_category String Identifier
attribute parent1_id long_name String Parent1 Id
attribute parent1_id units String unitless
variable parent2_id   String  
attribute parent2_id description String Unique ID for each second parent (if assigned)
attribute parent2_id ioos_category String Identifier
attribute parent2_id long_name String Parent2 Id
attribute parent2_id units String unitless
variable distance   float  
attribute distance _FillValue float NaN
attribute distance actual_range float 0.0, 16.4
attribute distance description String Net distance between parents and offspring
attribute distance ioos_category String Unknown
attribute distance long_name String Distance
attribute distance units String kilometers
variable origin_region   String  
attribute origin_region description String Region where settler came from (North=N; Central=C; South=S;)
attribute origin_region ioos_category String Location
attribute origin_region long_name String Origin Region
attribute origin_region units String unitless
variable direction   String  
attribute direction colorBarMaximum double 360.0
attribute direction colorBarMinimum double 0.0
attribute direction description String Direction larva travelled (North=N; South=S)
attribute direction ioos_category String Currents
attribute direction long_name String Direction
attribute direction units String unitless
variable settler_pld   float  
attribute settler_pld _FillValue float NaN
attribute settler_pld actual_range float 15.0, 42.5
attribute settler_pld description String Length of settler's larval phase
attribute settler_pld ioos_category String Unknown
attribute settler_pld long_name String Settler Pld
attribute settler_pld units String days
variable settler_sl   byte  
attribute settler_sl _FillValue byte 127
attribute settler_sl actual_range byte 9, 18
attribute settler_sl description String Standard length of settler
attribute settler_sl ioos_category String Unknown
attribute settler_sl long_name String Settler Sl
attribute settler_sl units String millimeters
variable sponge_length   byte  
attribute sponge_length _FillValue byte 127
attribute sponge_length actual_range byte 3, 74
attribute sponge_length description String Length of largest sponge tube
attribute sponge_length ioos_category String Unknown
attribute sponge_length long_name String Sponge Length
attribute sponge_length units String centimeters
variable sponge_tubes   byte  
attribute sponge_tubes _FillValue byte 127
attribute sponge_tubes actual_range byte 1, 5
attribute sponge_tubes description String Number of tubes per sponge
attribute sponge_tubes ioos_category String Unknown
attribute sponge_tubes long_name String Sponge Tubes
attribute sponge_tubes units String count
variable depth   double  
attribute depth _CoordinateAxisType String Height
attribute depth _CoordinateZisPositive String down
attribute depth _FillValue double NaN
attribute depth actual_range double 9.144, 23.1648
attribute depth axis String Z
attribute depth colorBarMaximum double 8000.0
attribute depth colorBarMinimum double -8000.0
attribute depth colorBarPalette String TopographyDepth
attribute depth description String Depth at base of sponge
attribute depth ioos_category String Location
attribute depth long_name String Depth
attribute depth positive String down
attribute depth standard_name String depth
attribute depth units String m

The information in the table above is also available in other file formats (.csv, .htmlTable, .itx, .json, .jsonlCSV, .jsonlKVP, .mat, .nc, .nccsv, .tsv, .xhtml) via a RESTful web service.


 
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