ERDDAP > info > bcodmo_dataset_738704

Grid DAP Data	Sub- set	Table DAP Data	Make A Graph	W M S	Source Data Files	Acces- sible	Title	Sum- mary	FGDC, ISO, Metadata	Back- ground Info	RSS	E mail	Institution	Dataset ID
	set	data	graph		files	public	[Goby parentage] - Data from 120 parent-offspring matches identified in fish on the Belizean Barrier Reef in 2013. (An Integrative Investigation of Population Connectivity Using a Coral Reef Fish)		I   M	background			BCO-DMO	bcodmo_dataset_738704

The Dataset's Variables and Attributes

Row Type	Variable Name	Attribute Name	Data Type	Value
attribute	NC_GLOBAL	access_formats	String	.htmlTable,.csv,.json,.mat,.nc,.tsv
attribute	NC_GLOBAL	acquisition_description	String	We surveyed a 41 km-long transect of the Belize Barrier reef, centered at Carrie Bow Cay, by SCUBA to conduct a genetic parentage study of the reef fish Elactinus lori. All underwater sampling was conducted using SCUBA at an average (\u00b1SD) depth of 16.03 \u00b1 2.19 m. A waypoint was recorded from the boat at the beginning and end of every collection dive, with the midpoint of each dive taken as the location for all individuals sampled on that dive. To collect settlers, we sampled ~ 100 individuals every kilometer. Individuals were collected from the outsides of sponges using slurp guns and placed them in plastic bags. At the surface, settlers were anesthetized with MS-222. For adults, we collected non-lethal tissue samples at three regions along the transect (n \u2248 1,000 per region). Each adult was collected with a slurp gun and restrained in a net; we took a small tissue sample from the caudal fin using scissors. All tissue was stored in 95% EtOH. At each adult collection sponge, we also measured: sponge depth (m, using dive computers), number of tubes per sponge, and length of largest sponge tube (nearest cm, using a tape measure). Otoliths were extracted from the 120 settlers that were assigned to parents. Otoliths were dissected, cleared of tissue, immersed in oil for 2-7 days, and rings were counted under a 50\u00d7 oil immersion lens Further details on all methods can be found in D\u2019Aloia et al. (2015), PNAS.
attribute	NC_GLOBAL	awards_0_award_nid	String	544434
attribute	NC_GLOBAL	awards_0_award_number	String	OCE-1260424
attribute	NC_GLOBAL	awards_0_data_url	String	http://www.nsf.gov/awardsearch/showAward.do?AwardNumber=1260424
attribute	NC_GLOBAL	awards_0_funder_name	String	NSF Division of Ocean Sciences
attribute	NC_GLOBAL	awards_0_funding_acronym	String	NSF OCE
attribute	NC_GLOBAL	awards_0_funding_source_nid	String	355
attribute	NC_GLOBAL	awards_0_program_manager	String	David L. Garrison
attribute	NC_GLOBAL	awards_0_program_manager_nid	String	50534
attribute	NC_GLOBAL	cdm_data_type	String	Other
attribute	NC_GLOBAL	comment	String	Goby Percentage P. Buston and C. D'Aloia, PIs Version 18 June 2018
attribute	NC_GLOBAL	Conventions	String	COARDS, CF-1.6, ACDD-1.3
attribute	NC_GLOBAL	creator_email	String	info at bco-dmo.org
attribute	NC_GLOBAL	creator_name	String	BCO-DMO
attribute	NC_GLOBAL	creator_type	String	institution
attribute	NC_GLOBAL	creator_url	String	https://www.bco-dmo.org/
attribute	NC_GLOBAL	data_source	String	extract_data_as_tsv version 2.3 19 Dec 2019
attribute	NC_GLOBAL	date_created	String	2018-06-18T15:46:29Z
attribute	NC_GLOBAL	date_modified	String	2019-06-07T15:34:31Z
attribute	NC_GLOBAL	defaultDataQuery	String	&time<now
attribute	NC_GLOBAL	doi	String	10.1575/1912/bco-dmo.738704.1
attribute	NC_GLOBAL	geospatial_vertical_max	double	23.1648
attribute	NC_GLOBAL	geospatial_vertical_min	double	9.144
attribute	NC_GLOBAL	geospatial_vertical_positive	String	down
attribute	NC_GLOBAL	geospatial_vertical_units	String	m
attribute	NC_GLOBAL	infoUrl	String	https://www.bco-dmo.org/dataset/738704
attribute	NC_GLOBAL	institution	String	BCO-DMO
attribute	NC_GLOBAL	instruments_0_dataset_instrument_description	String	Used to collect GPS data
attribute	NC_GLOBAL	instruments_0_dataset_instrument_nid	String	738712
attribute	NC_GLOBAL	instruments_0_description	String	Acquires satellite signals and tracks your location.
attribute	NC_GLOBAL	instruments_0_instrument_name	String	GPS receiver
attribute	NC_GLOBAL	instruments_0_instrument_nid	String	706037
attribute	NC_GLOBAL	instruments_0_supplied_name	String	GPSMAP 76Cx (Garmin)
attribute	NC_GLOBAL	keywords	String	bco, bco-dmo, biological, chemical, data, dataset, depth, direction, distance, dmo, erddap, length, management, oceanography, office, offspring, offspring_id, origin, origin_region, parent1, parent1_id, parent2, parent2_id, pld, preliminary, region, settler, settler_pld, settler_sl, sponge, sponge_length, sponge_tubes, tubes, year
attribute	NC_GLOBAL	license	String	https://www.bco-dmo.org/dataset/738704/license
attribute	NC_GLOBAL	metadata_source	String	https://www.bco-dmo.org/api/dataset/738704
attribute	NC_GLOBAL	param_mapping	String	{'738704': {'depth': 'flag - depth'}}
attribute	NC_GLOBAL	parameter_source	String	https://www.bco-dmo.org/mapserver/dataset/738704/parameters
attribute	NC_GLOBAL	people_0_affiliation	String	Boston University
attribute	NC_GLOBAL	people_0_affiliation_acronym	String	BU
attribute	NC_GLOBAL	people_0_person_name	String	Dr Peter Buston
attribute	NC_GLOBAL	people_0_person_nid	String	544437
attribute	NC_GLOBAL	people_0_role	String	Principal Investigator
attribute	NC_GLOBAL	people_0_role_type	String	originator
attribute	NC_GLOBAL	people_1_affiliation	String	Woods Hole Oceanographic Institution
attribute	NC_GLOBAL	people_1_affiliation_acronym	String	WHOI
attribute	NC_GLOBAL	people_1_person_name	String	Dr Cassidy C. D'Aloia
attribute	NC_GLOBAL	people_1_person_nid	String	704789
attribute	NC_GLOBAL	people_1_role	String	Co-Principal Investigator
attribute	NC_GLOBAL	people_1_role_type	String	originator
attribute	NC_GLOBAL	people_2_affiliation	String	Boston University
attribute	NC_GLOBAL	people_2_affiliation_acronym	String	BU
attribute	NC_GLOBAL	people_2_person_name	String	Dr Peter Buston
attribute	NC_GLOBAL	people_2_person_nid	String	544437
attribute	NC_GLOBAL	people_2_role	String	Contact
attribute	NC_GLOBAL	people_2_role_type	String	related
attribute	NC_GLOBAL	people_3_affiliation	String	Woods Hole Oceanographic Institution
attribute	NC_GLOBAL	people_3_affiliation_acronym	String	WHOI BCO-DMO
attribute	NC_GLOBAL	people_3_person_name	String	Hannah Ake
attribute	NC_GLOBAL	people_3_person_nid	String	650173
attribute	NC_GLOBAL	people_3_role	String	BCO-DMO Data Manager
attribute	NC_GLOBAL	people_3_role_type	String	related
attribute	NC_GLOBAL	project	String	Elacatinus Dispersal I
attribute	NC_GLOBAL	projects_0_acronym	String	Elacatinus Dispersal I
attribute	NC_GLOBAL	projects_0_description	String	Understanding the patterns, causes and consequences of larval dispersal is a major goal of 21st century marine ecology. Patterns of dispersal determine the rates of larval exchange, or connectivity, between populations. Both physical factors (e.g., water movement) and biological factors (e.g., larval behavior) cause variation in population connectivity. Population connectivity, in turn, has major consequences for all aspects of an organism's biology, from individual behavior to metapopulation dynamics, and from evolution within metapopulations to the origin and extinction of species. Further, understanding population connectivity is critical for the design of effective networks of marine reserves, creation of vital tools in conservation, and the development of sustainable fisheries. Over the last decade, three methods, each of which tells something slightly different, have emerged as leading contenders to provide the greatest insights into population connectivity. First, coupled biophysical models make assumptions regarding water flow, larval behavior and ecology, to predict population connectivity. Second, indirect genetic methods use spatial distributions of allele frequencies to infer population connectivity. Third, direct genetic methods use parentage analyses, tracing recruits to specific adults, to measure population connectivity. Despite advances, lack of integration means that we do not know the predictive skill of biophysical models, or the extent to which patterns of dispersal predict spatial genetic structure. The overall objective of this proposal is to conduct an integrated investigation of population connectivity, using all three methods in one tractable system: the neon goby, Elacatinus lori, on the Belizean Barrier Reef. There are three motives for this choice of study system: i) fourteen highly polymorphic microsatellite loci have been developed, facilitating the assignment of recruits to parents using parentage analyses and the measurement of dispersal; ii) the physical oceanography of the Belizean Barrier Reef is well-studied, facilitating the development and testing of coupled biophysical models; and, iii) E. lori has a relatively small biogeographic range, facilitating analysis of the spatial distribution of allele frequencies throughout its range. Broader Impacts. The grant will support one postdoc and two graduate students who will be trained in scientific diving, marine fieldwork, population genetics, biophysical modeling, and mathematical modeling, and will gain collaborative research experience. PIs will incorporate research findings in their courses, which cover all these topics. The grant will also broaden participation of under-represented groups by supporting six undergraduates from groups traditionally underrepresented in STEM fields. In each year of the project there will be an All Participants meeting to reinforce the network of participants. A project website will be developed, in English and Spanish, on the theme of larval dispersal and population connectivity. This will include a resource for K-12 marine science educators developed in collaboration with a marine science educator. All PIs will ensure that results are broadly disseminated to the scientific community and general public via appropriate forms of media.
attribute	NC_GLOBAL	projects_0_end_date	String	2017-02
attribute	NC_GLOBAL	projects_0_geolocation	String	Belizean Barrier Reef System (16.803 degrees North 88.096 degrees West)
attribute	NC_GLOBAL	projects_0_name	String	An Integrative Investigation of Population Connectivity Using a Coral Reef Fish
attribute	NC_GLOBAL	projects_0_project_nid	String	544435
attribute	NC_GLOBAL	projects_0_project_website	String	http://people.bu.edu/buston/lab/Welcome.html
attribute	NC_GLOBAL	projects_0_start_date	String	2013-03
attribute	NC_GLOBAL	publisher_name	String	Biological and Chemical Oceanographic Data Management Office (BCO-DMO)
attribute	NC_GLOBAL	publisher_type	String	institution
attribute	NC_GLOBAL	sourceUrl	String	(local files)
attribute	NC_GLOBAL	standard_name_vocabulary	String	CF Standard Name Table v55
attribute	NC_GLOBAL	subsetVariables	String	year
attribute	NC_GLOBAL	summary	String	Data from 120 parent-offspring matches identified in fish on the Belizean Barrier Reef in 2013.
attribute	NC_GLOBAL	title	String	[Goby parentage] - Data from 120 parent-offspring matches identified in fish on the Belizean Barrier Reef in 2013. (An Integrative Investigation of Population Connectivity Using a Coral Reef Fish)
attribute	NC_GLOBAL	version	String	1
attribute	NC_GLOBAL	xml_source	String	osprey2erddap.update_xml() v1.3
variable	year		short
attribute	year	_FillValue	short	32767
attribute	year	actual_range	short	2013, 2013
attribute	year	bcodmo_name	String	year
attribute	year	description	String	Year of sampling
attribute	year	long_name	String	Year
attribute	year	nerc_identifier	String	https://vocab.nerc.ac.uk/collection/P01/current/YEARXXXX/
attribute	year	units	String	unitless
variable	offspring_id		String
attribute	offspring_id	bcodmo_name	String	sample
attribute	offspring_id	description	String	Unique ID for each offspring
attribute	offspring_id	long_name	String	Offspring Id
attribute	offspring_id	nerc_identifier	String	https://vocab.nerc.ac.uk/collection/P02/current/ACYC/
attribute	offspring_id	units	String	unitless
variable	parent1_id		String
attribute	parent1_id	bcodmo_name	String	sample
attribute	parent1_id	description	String	Unique ID for each parent
attribute	parent1_id	long_name	String	Parent1 Id
attribute	parent1_id	nerc_identifier	String	https://vocab.nerc.ac.uk/collection/P02/current/ACYC/
attribute	parent1_id	units	String	unitless
variable	parent2_id		String
attribute	parent2_id	bcodmo_name	String	sample
attribute	parent2_id	description	String	Unique ID for each second parent (if assigned)
attribute	parent2_id	long_name	String	Parent2 Id
attribute	parent2_id	nerc_identifier	String	https://vocab.nerc.ac.uk/collection/P02/current/ACYC/
attribute	parent2_id	units	String	unitless
variable	distance		float
attribute	distance	_FillValue	float	NaN
attribute	distance	actual_range	float	0.0, 16.4
attribute	distance	bcodmo_name	String	site_descrip
attribute	distance	description	String	Net distance between parents and offspring
attribute	distance	long_name	String	Distance
attribute	distance	units	String	kilometers
variable	origin_region		String
attribute	origin_region	bcodmo_name	String	site_descrip
attribute	origin_region	description	String	Region where settler came from (North=N; Central=C; South=S;)
attribute	origin_region	long_name	String	Origin Region
attribute	origin_region	units	String	unitless
variable	direction		String
attribute	direction	bcodmo_name	String	sample_descrip
attribute	direction	description	String	Direction larva travelled (North=N; South=S)
attribute	direction	long_name	String	Direction
attribute	direction	units	String	unitless
variable	settler_pld		float
attribute	settler_pld	_FillValue	float	NaN
attribute	settler_pld	actual_range	float	15.0, 42.5
attribute	settler_pld	bcodmo_name	String	days
attribute	settler_pld	description	String	Length of settler's larval phase
attribute	settler_pld	long_name	String	Settler Pld
attribute	settler_pld	units	String	days
variable	settler_sl		byte
attribute	settler_sl	_FillValue	byte	127
attribute	settler_sl	actual_range	byte	9, 18
attribute	settler_sl	bcodmo_name	String	length
attribute	settler_sl	description	String	Standard length of settler
attribute	settler_sl	long_name	String	Settler Sl
attribute	settler_sl	units	String	millimeters
variable	sponge_length		byte
attribute	sponge_length	_FillValue	byte	127
attribute	sponge_length	actual_range	byte	3, 74
attribute	sponge_length	bcodmo_name	String	length_max
attribute	sponge_length	description	String	Length of largest sponge tube
attribute	sponge_length	long_name	String	Sponge Length
attribute	sponge_length	units	String	centimeters
variable	sponge_tubes		byte
attribute	sponge_tubes	_FillValue	byte	127
attribute	sponge_tubes	actual_range	byte	1, 5
attribute	sponge_tubes	bcodmo_name	String	count
attribute	sponge_tubes	description	String	Number of tubes per sponge
attribute	sponge_tubes	long_name	String	Sponge Tubes
attribute	sponge_tubes	units	String	count
variable	depth		double
attribute	depth	_CoordinateAxisType	String	Height
attribute	depth	_CoordinateZisPositive	String	down
attribute	depth	_FillValue	double	NaN
attribute	depth	actual_range	double	9.144, 23.1648
attribute	depth	axis	String	Z
attribute	depth	bcodmo_name	String	depth
attribute	depth	colorBarMaximum	double	8000.0
attribute	depth	colorBarMinimum	double	-8000.0
attribute	depth	colorBarPalette	String	TopographyDepth
attribute	depth	description	String	Depth at base of sponge
attribute	depth	ioos_category	String	Location
attribute	depth	long_name	String	Depth
attribute	depth	nerc_identifier	String	https://vocab.nerc.ac.uk/collection/P09/current/DEPH/
attribute	depth	positive	String	down
attribute	depth	standard_name	String	depth
attribute	depth	units	String	m

The information in the table above is also available in other file formats (.csv, .htmlTable, .itx, .json, .jsonlCSV1, .jsonlCSV, .jsonlKVP, .mat, .nc, .nccsv, .tsv, .xhtml) via a RESTful web service.