BCO-DMO ERDDAP
Accessing BCO-DMO data |
log in
Brought to you by BCO-DMO |
Grid DAP Data | Sub- set | Table DAP Data | Make A Graph | W M S | Source Data Files | Acces- sible | Title | Sum- mary | FGDC, ISO, Metadata | Back- ground Info | RSS | E | Institution | Dataset ID |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
set | data | graph | files | public | [ARK27-3: Bulk FLA hydrolysis rates] - Microbial enzyme activities: polysaccharide hydrolase activities in bulk seawater samples from the RV\Polarstern cruise ARKXXVII/3 in the Central Arctic Ocean and Laptev Sea, Aug-Sept. 2012 (Latitudinal and depth-related contrasts in enzymatic capabilities of pelagic microbial communities: Predictable patterns in the ocean?) | F I M | background | BCO-DMO | bcodmo_dataset_742235 |
Row Type | Variable Name | Attribute Name | Data Type | Value |
---|---|---|---|---|
attribute | NC_GLOBAL | access_formats | String | .htmlTable,.csv,.json,.mat,.nc,.tsv,.esriCsv,.geoJson,.odvTxt |
attribute | NC_GLOBAL | acquisition_description | String | Water was collected via Niskin bottles mounted on a rosette, equipped with a CTD. The potential of the seawater microbial community to hydrolyze six high- molecular-weight polysaccharides (arabinogalactan, chondroitin sulfate, fucoidan, laminarin, pullulan, and xylan) was investigated in surface and bottom water. For each substrate, three 15 mL falcon tubes were filled with seawater and one 15 mL falcon tube was filled with autoclaved seawater to serve as a killed control.\u00a0Substrate\u00a0was added at 3.5 uM monomer- equivalent concentrations. Two\u00a0 15 mL falcon tubes \u2013 one with seawater and one with autoclaved seawater \u2013 with no added substrate served as blank controls. Incubations were stored in the dark at 0 C. Subsamples of the incubations were collected at time zero, and at 120h, 240 h, 360 h, and 600 h.\u00a0 At each\u00a0timepoint, 2 mL of seawater was collected from the 15 mL falcon tube using a sterile syringe, filtered through a 0.2 um pore size syringe filter, and stored frozen until processing. The hydrolysis of high molecular weight substrate to lower molecular weight hydrolysis products\u00a0was\u00a0measured using gel permeation chromatography with fluorescence detection, after the method of Arnosti [1996, 2003]. In short, the subsample was injected onto a series of columns consisting of a 21 cm column of G50 and a 19 cm column of G75 Sephadex gel. The fluorescence of the column effluent was measured at excitation and emission wavelengths of 490 and 530 nm, respectively. Hydrolysis rates were calculated from the change in\u00a0molecular\u00a0weight distribution of the substrate over time, as described in detail in Arnosti [2003]. |
attribute | NC_GLOBAL | awards_0_award_nid | String | 712358 |
attribute | NC_GLOBAL | awards_0_award_number | String | OCE-1332881 |
attribute | NC_GLOBAL | awards_0_data_url | String | http://www.nsf.gov/awardsearch/showAward.do?AwardNumber=1332881 |
attribute | NC_GLOBAL | awards_0_funder_name | String | NSF Division of Ocean Sciences |
attribute | NC_GLOBAL | awards_0_funding_acronym | String | NSF OCE |
attribute | NC_GLOBAL | awards_0_funding_source_nid | String | 355 |
attribute | NC_GLOBAL | awards_0_program_manager | String | Henrietta N Edmonds |
attribute | NC_GLOBAL | awards_0_program_manager_nid | String | 51517 |
attribute | NC_GLOBAL | cdm_data_type | String | Other |
attribute | NC_GLOBAL | comment | String | Microbial Activities: Bulk FLA Polarstern ARK27-3 P.I.: C. Arnosti (UNC-CH) version: 2018-07-24 NOTE: These data were published in Balmonte et al (2018) Envir. Microbiol. Figs. 5 & S8 |
attribute | NC_GLOBAL | Conventions | String | COARDS, CF-1.6, ACDD-1.3 |
attribute | NC_GLOBAL | creator_email | String | info at bco-dmo.org |
attribute | NC_GLOBAL | creator_name | String | BCO-DMO |
attribute | NC_GLOBAL | creator_type | String | institution |
attribute | NC_GLOBAL | creator_url | String | https://www.bco-dmo.org/ |
attribute | NC_GLOBAL | data_source | String | extract_data_as_tsv version 2.3 19 Dec 2019 |
attribute | NC_GLOBAL | dataset_current_state | String | Final and no updates |
attribute | NC_GLOBAL | date_created | String | 2018-07-26T12:59:34Z |
attribute | NC_GLOBAL | date_modified | String | 2020-04-27T18:12:43Z |
attribute | NC_GLOBAL | defaultDataQuery | String | &time<now |
attribute | NC_GLOBAL | doi | String | 10.26008/1912/bco-dmo.742235.1 |
attribute | NC_GLOBAL | Easternmost_Easting | double | 130.5795 |
attribute | NC_GLOBAL | geospatial_lat_max | double | 88.809 |
attribute | NC_GLOBAL | geospatial_lat_min | double | 79.6502 |
attribute | NC_GLOBAL | geospatial_lat_units | String | degrees_north |
attribute | NC_GLOBAL | geospatial_lon_max | double | 130.5795 |
attribute | NC_GLOBAL | geospatial_lon_min | double | 31.21 |
attribute | NC_GLOBAL | geospatial_lon_units | String | degrees_east |
attribute | NC_GLOBAL | geospatial_vertical_max | double | 4350.0 |
attribute | NC_GLOBAL | geospatial_vertical_min | double | 1.0 |
attribute | NC_GLOBAL | geospatial_vertical_positive | String | down |
attribute | NC_GLOBAL | geospatial_vertical_units | String | m |
attribute | NC_GLOBAL | infoUrl | String | https://www.bco-dmo.org/dataset/742235 |
attribute | NC_GLOBAL | institution | String | BCO-DMO |
attribute | NC_GLOBAL | instruments_0_acronym | String | Niskin bottle |
attribute | NC_GLOBAL | instruments_0_dataset_instrument_nid | String | 742706 |
attribute | NC_GLOBAL | instruments_0_description | String | A Niskin bottle (a next generation water sampler based on the Nansen bottle) is a cylindrical, non-metallic water collection device with stoppers at both ends. The bottles can be attached individually on a hydrowire or deployed in 12, 24, or 36 bottle Rosette systems mounted on a frame and combined with a CTD. Niskin bottles are used to collect discrete water samples for a range of measurements including pigments, nutrients, plankton, etc. |
attribute | NC_GLOBAL | instruments_0_instrument_external_identifier | String | https://vocab.nerc.ac.uk/collection/L22/current/TOOL0412/ |
attribute | NC_GLOBAL | instruments_0_instrument_name | String | Niskin bottle |
attribute | NC_GLOBAL | instruments_0_instrument_nid | String | 413 |
attribute | NC_GLOBAL | instruments_1_acronym | String | CTD |
attribute | NC_GLOBAL | instruments_1_dataset_instrument_nid | String | 742739 |
attribute | NC_GLOBAL | instruments_1_description | String | The Conductivity, Temperature, Depth (CTD) unit is an integrated instrument package designed to measure the conductivity, temperature, and pressure (depth) of the water column. The instrument is lowered via cable through the water column and permits scientists observe the physical properties in real time via a conducting cable connecting the CTD to a deck unit and computer on the ship. The CTD is often configured with additional optional sensors including fluorometers, transmissometers and/or radiometers. It is often combined with a Rosette of water sampling bottles (e.g. Niskin, GO-FLO) for collecting discrete water samples during the cast. This instrument designation is used when specific make and model are not known. |
attribute | NC_GLOBAL | instruments_1_instrument_external_identifier | String | https://vocab.nerc.ac.uk/collection/L05/current/130/ |
attribute | NC_GLOBAL | instruments_1_instrument_name | String | CTD profiler |
attribute | NC_GLOBAL | instruments_1_instrument_nid | String | 417 |
attribute | NC_GLOBAL | instruments_2_acronym | String | Fluorometer |
attribute | NC_GLOBAL | instruments_2_dataset_instrument_nid | String | 742761 |
attribute | NC_GLOBAL | instruments_2_description | String | A fluorometer or fluorimeter is a device used to measure parameters of fluorescence: its intensity and wavelength distribution of emission spectrum after excitation by a certain spectrum of light. The instrument is designed to measure the amount of stimulated electromagnetic radiation produced by pulses of electromagnetic radiation emitted into a water sample or in situ. |
attribute | NC_GLOBAL | instruments_2_instrument_external_identifier | String | https://vocab.nerc.ac.uk/collection/L05/current/113/ |
attribute | NC_GLOBAL | instruments_2_instrument_name | String | Fluorometer |
attribute | NC_GLOBAL | instruments_2_instrument_nid | String | 484 |
attribute | NC_GLOBAL | instruments_3_acronym | String | GPC |
attribute | NC_GLOBAL | instruments_3_dataset_instrument_nid | String | 742762 |
attribute | NC_GLOBAL | instruments_3_description | String | Instruments that separate components in aqueous or organic solution based on molecular size generally for molecular weight determination. Gel permeation chromatography (GPC) is a type of size exclusion chromatography (SEC), that separates analytes on the basis of size. |
attribute | NC_GLOBAL | instruments_3_instrument_name | String | Gel Permeation Chromatograph |
attribute | NC_GLOBAL | instruments_3_instrument_nid | String | 669469 |
attribute | NC_GLOBAL | keywords | String | average, bco, bco-dmo, biological, cast, cast_no, chemical, comments, data, dataset, date, depth, depth_m, depth_no, dev, dmo, elapsed, erddap, iso, latitude, longitude, management, oceanography, office, preliminary, profiler, rate, rep1, rep1_rate, rep2, rep2_rate, rep3, rep3_rate, salinity, salinity-temperature-depth, station, station_no, std, std_dev, substrate, temperature, time, time_elapsed_hr, timepoint |
attribute | NC_GLOBAL | license | String | https://www.bco-dmo.org/dataset/742235/license |
attribute | NC_GLOBAL | metadata_source | String | https://www.bco-dmo.org/api/dataset/742235 |
attribute | NC_GLOBAL | Northernmost_Northing | double | 88.809 |
attribute | NC_GLOBAL | param_mapping | String | {'742235': {'Latitude': 'flag - latitude', 'depth_m': 'flag - depth', 'Longitude': 'flag - longitude', 'ISO_DateTime_UTC': 'master - time'}} |
attribute | NC_GLOBAL | parameter_source | String | https://www.bco-dmo.org/mapserver/dataset/742235/parameters |
attribute | NC_GLOBAL | people_0_affiliation | String | University of North Carolina at Chapel Hill |
attribute | NC_GLOBAL | people_0_affiliation_acronym | String | UNC-Chapel Hill |
attribute | NC_GLOBAL | people_0_person_name | String | Carol Arnosti |
attribute | NC_GLOBAL | people_0_person_nid | String | 661940 |
attribute | NC_GLOBAL | people_0_role | String | Principal Investigator |
attribute | NC_GLOBAL | people_0_role_type | String | originator |
attribute | NC_GLOBAL | people_1_affiliation | String | Woods Hole Oceanographic Institution |
attribute | NC_GLOBAL | people_1_affiliation_acronym | String | WHOI BCO-DMO |
attribute | NC_GLOBAL | people_1_person_name | String | Nancy Copley |
attribute | NC_GLOBAL | people_1_person_nid | String | 50396 |
attribute | NC_GLOBAL | people_1_role | String | BCO-DMO Data Manager |
attribute | NC_GLOBAL | people_1_role_type | String | related |
attribute | NC_GLOBAL | project | String | Patterns of activities |
attribute | NC_GLOBAL | projects_0_acronym | String | Patterns of activities |
attribute | NC_GLOBAL | projects_0_description | String | NSF Award Abstract: Heterotrophic microbial communities are key players in the marine carbon cycle, transforming and respiring organic carbon, regenerating nutrients, and acting as the final filter in sediments through which organic matter passes before long-term burial. Microbially-driven carbon cycling in the ocean profoundly affects the global carbon cycle, but key factors determining rates and locations of organic matter remineralization are unclear. In this study, researchers from the University of North Carolina at Chapel Hill will investigate the ability of pelagic microbial communities to initiate the remineralization of polysaccharides and proteins, which together constitute a major pool of organic matter in the ocean. Results from this study will be predictive on a large scale regarding the nature of the microbial response to organic matter input, and will provide a mechanistic framework for interpreting organic matter reactivity in the ocean. Broader Impacts: This study will provide scientific training for undergraduate and graduate students from underrepresented groups. The project will also involve German colleagues, thus strengthening international scientific collaboration. |
attribute | NC_GLOBAL | projects_0_end_date | String | 2017-07 |
attribute | NC_GLOBAL | projects_0_geolocation | String | Atlantic Ocean, Arctic Ocean, Pacific Ocean, Greenland |
attribute | NC_GLOBAL | projects_0_name | String | Latitudinal and depth-related contrasts in enzymatic capabilities of pelagic microbial communities: Predictable patterns in the ocean? |
attribute | NC_GLOBAL | projects_0_project_nid | String | 712359 |
attribute | NC_GLOBAL | projects_0_start_date | String | 2013-08 |
attribute | NC_GLOBAL | publisher_name | String | Biological and Chemical Oceanographic Data Management Office (BCO-DMO) |
attribute | NC_GLOBAL | publisher_type | String | institution |
attribute | NC_GLOBAL | sourceUrl | String | (local files) |
attribute | NC_GLOBAL | Southernmost_Northing | double | 79.6502 |
attribute | NC_GLOBAL | standard_name_vocabulary | String | CF Standard Name Table v55 |
attribute | NC_GLOBAL | subsetVariables | String | comments |
attribute | NC_GLOBAL | summary | String | This dataset includes polysaccharide hydrolysis rates measured in bulk (not filter-fractionated) seawater. Links to archived CTD data are also provided. |
attribute | NC_GLOBAL | time_coverage_end | String | 2012-09-22T17:31Z |
attribute | NC_GLOBAL | time_coverage_start | String | 2012-08-09T19:25Z |
attribute | NC_GLOBAL | title | String | [ARK27-3: Bulk FLA hydrolysis rates] - Microbial enzyme activities: polysaccharide hydrolase activities in bulk seawater samples from the RV\Polarstern cruise ARKXXVII/3 in the Central Arctic Ocean and Laptev Sea, Aug-Sept. 2012 (Latitudinal and depth-related contrasts in enzymatic capabilities of pelagic microbial communities: Predictable patterns in the ocean?) |
attribute | NC_GLOBAL | version | String | 1 |
attribute | NC_GLOBAL | Westernmost_Easting | double | 31.21 |
attribute | NC_GLOBAL | xml_source | String | osprey2erddap.update_xml() v1.5 |
variable | station_no | short | ||
attribute | station_no | _FillValue | short | 32767 |
attribute | station_no | actual_range | short | 224, 360 |
attribute | station_no | bcodmo_name | String | station |
attribute | station_no | description | String | refers to station number for cruise |
attribute | station_no | long_name | String | Station No |
attribute | station_no | units | String | unitless |
variable | depth_no | String | ||
attribute | depth_no | bcodmo_name | String | unknown |
attribute | depth_no | description | String | sequence of depths sampled (1 is surface; higher numbers at greater depths) |
attribute | depth_no | long_name | String | Depth |
attribute | depth_no | standard_name | String | depth |
attribute | depth_no | units | String | unitless |
variable | depth | double | ||
attribute | depth | _CoordinateAxisType | String | Height |
attribute | depth | _CoordinateZisPositive | String | down |
attribute | depth | _FillValue | double | NaN |
attribute | depth | actual_range | double | 1.0, 4350.0 |
attribute | depth | axis | String | Z |
attribute | depth | bcodmo_name | String | depth |
attribute | depth | colorBarMaximum | double | 8000.0 |
attribute | depth | colorBarMinimum | double | -8000.0 |
attribute | depth | colorBarPalette | String | TopographyDepth |
attribute | depth | description | String | actual depth at which water collected |
attribute | depth | ioos_category | String | Location |
attribute | depth | long_name | String | Depth |
attribute | depth | nerc_identifier | String | https://vocab.nerc.ac.uk/collection/P09/current/DEPH/ |
attribute | depth | positive | String | down |
attribute | depth | standard_name | String | depth |
attribute | depth | units | String | m |
variable | cast_no | String | ||
attribute | cast_no | bcodmo_name | String | cast |
attribute | cast_no | description | String | cast number (refers to cast of CTD/Niskin bottles on cruise) |
attribute | cast_no | long_name | String | Cast No |
attribute | cast_no | units | String | unitless |
variable | time | double | ||
attribute | time | _CoordinateAxisType | String | Time |
attribute | time | actual_range | double | 1.3445403E9, 1.34833506E9 |
attribute | time | axis | String | T |
attribute | time | bcodmo_name | String | ISO_DateTime_UTC |
attribute | time | description | String | date and time in ISO format (yyyy-mm-ddTHH:MM:SS |
attribute | time | ioos_category | String | Time |
attribute | time | long_name | String | ISO Date Time UTC |
attribute | time | nerc_identifier | String | https://vocab.nerc.ac.uk/collection/P01/current/DTUT8601/ |
attribute | time | source_name | String | ISO_DateTime_UTC |
attribute | time | standard_name | String | time |
attribute | time | time_origin | String | 01-JAN-1970 00:00:00 |
attribute | time | time_precision | String | 1970-01-01T00:00Z |
attribute | time | units | String | seconds since 1970-01-01T00:00:00Z |
variable | latitude | double | ||
attribute | latitude | _CoordinateAxisType | String | Lat |
attribute | latitude | _FillValue | double | NaN |
attribute | latitude | actual_range | double | 79.6502, 88.809 |
attribute | latitude | axis | String | Y |
attribute | latitude | bcodmo_name | String | latitude |
attribute | latitude | colorBarMaximum | double | 90.0 |
attribute | latitude | colorBarMinimum | double | -90.0 |
attribute | latitude | description | String | latitude; north is positive |
attribute | latitude | ioos_category | String | Location |
attribute | latitude | long_name | String | Latitude |
attribute | latitude | nerc_identifier | String | https://vocab.nerc.ac.uk/collection/P09/current/LATX/ |
attribute | latitude | standard_name | String | latitude |
attribute | latitude | units | String | degrees_north |
variable | longitude | double | ||
attribute | longitude | _CoordinateAxisType | String | Lon |
attribute | longitude | _FillValue | double | NaN |
attribute | longitude | actual_range | double | 31.21, 130.5795 |
attribute | longitude | axis | String | X |
attribute | longitude | bcodmo_name | String | longitude |
attribute | longitude | colorBarMaximum | double | 180.0 |
attribute | longitude | colorBarMinimum | double | -180.0 |
attribute | longitude | description | String | longitude; east is postivie |
attribute | longitude | ioos_category | String | Location |
attribute | longitude | long_name | String | Longitude |
attribute | longitude | nerc_identifier | String | https://vocab.nerc.ac.uk/collection/P09/current/LONX/ |
attribute | longitude | standard_name | String | longitude |
attribute | longitude | units | String | degrees_east |
variable | substrate | String | ||
attribute | substrate | bcodmo_name | String | unknown |
attribute | substrate | description | String | substrates for measurement of enzymatic activities. ara:arabinogalactan; chn:chondroitin sulfate; fuc:fucoidan; lam:laminarin ; pul:pullulan; xyl:xylan |
attribute | substrate | long_name | String | Substrate |
attribute | substrate | units | String | unitless |
variable | timepoint | String | ||
attribute | timepoint | bcodmo_name | String | time_point |
attribute | timepoint | description | String | sampling point post-incubation |
attribute | timepoint | long_name | String | Timepoint |
attribute | timepoint | units | String | unitless |
variable | time_elapsed_hr | short | ||
attribute | time_elapsed_hr | _FillValue | short | 32767 |
attribute | time_elapsed_hr | actual_range | short | 0, 600 |
attribute | time_elapsed_hr | bcodmo_name | String | time_elapsed |
attribute | time_elapsed_hr | description | String | incubation time |
attribute | time_elapsed_hr | long_name | String | Time Elapsed Hr |
attribute | time_elapsed_hr | nerc_identifier | String | https://vocab.nerc.ac.uk/collection/P01/current/ELTMZZZZ/ |
attribute | time_elapsed_hr | units | String | hours |
variable | rep1_rate | float | ||
attribute | rep1_rate | _FillValue | float | NaN |
attribute | rep1_rate | actual_range | float | 0.0, 6.078973 |
attribute | rep1_rate | bcodmo_name | String | unknown |
attribute | rep1_rate | description | String | replicate 1 hydrolysis rate |
attribute | rep1_rate | long_name | String | Rep1 Rate |
attribute | rep1_rate | units | String | nanomoles/liter/hour (nmol L-1 h-1) |
variable | rep2_rate | float | ||
attribute | rep2_rate | _FillValue | float | NaN |
attribute | rep2_rate | actual_range | float | 0.0, 5.306054 |
attribute | rep2_rate | bcodmo_name | String | unknown |
attribute | rep2_rate | description | String | replicate 2 hydrolysis rate |
attribute | rep2_rate | long_name | String | Rep2 Rate |
attribute | rep2_rate | units | String | nanomoles/liter/hour (nmol L-1 h-1) |
variable | rep3_rate | float | ||
attribute | rep3_rate | _FillValue | float | NaN |
attribute | rep3_rate | actual_range | float | 0.0, 6.909847 |
attribute | rep3_rate | bcodmo_name | String | unknown |
attribute | rep3_rate | description | String | replicate 3 hydrolysis rate |
attribute | rep3_rate | long_name | String | Rep3 Rate |
attribute | rep3_rate | units | String | nanomoles/liter/hour (nmol L-1 h-1) |
variable | average | float | ||
attribute | average | _FillValue | float | NaN |
attribute | average | actual_range | float | 0.0, 5.77666 |
attribute | average | bcodmo_name | String | unknown |
attribute | average | description | String | average of hydrolysis rates |
attribute | average | long_name | String | Average |
attribute | average | units | String | nanomoles/liter/hour (nmol L-1 h-1) |
variable | std_dev | float | ||
attribute | std_dev | _FillValue | float | NaN |
attribute | std_dev | actual_range | float | 0.0, 3.15793 |
attribute | std_dev | bcodmo_name | String | unknown |
attribute | std_dev | description | String | std deviation of hydrolysis rates |
attribute | std_dev | long_name | String | Std Dev |
attribute | std_dev | units | String | nanomoles/liter/hour (nmol L-1 h-1) |
variable | comments | String | ||
attribute | comments | bcodmo_name | String | external_link |
attribute | comments | description | String | url of CTD data in Pangaea database |
attribute | comments | long_name | String | Comments |
attribute | comments | units | String | unitless |
The information in the table above is also available in other file formats (.csv, .htmlTable, .itx, .json, .jsonlCSV1, .jsonlCSV, .jsonlKVP, .mat, .nc, .nccsv, .tsv, .xhtml) via a RESTful web service.