ERDDAP > info > bcodmo_dataset_748140

Grid DAP Data	Sub- set	Table DAP Data	Make A Graph	W M S	Source Data Files	Acces- sible	Title	Sum- mary	FGDC, ISO, Metadata	Back- ground Info	RSS	E mail	Institution	Dataset ID
		data	graph		files	public	[Doo et al. 2018, Coral Reefs - Mesocosm chemistry data] - Seawater chemistry treatment conditions (Moorea Coral Reef Long-Term Ecological Research site)		I   M	background			BCO-DMO	bcodmo_dataset_748140

The Dataset's Variables and Attributes

Row Type	Variable Name	Attribute Name	Data Type	Value
attribute	NC_GLOBAL	access_formats	String	.htmlTable,.csv,.json,.mat,.nc,.tsv
attribute	NC_GLOBAL	acquisition_description	String	Collection and experimental setup methods extracted from Doo et al. (2018): Colony collection: In January 2017, 48 colonies of Pocillopora verrucosa (Ellis and Solander 1786) were collected randomly on scuba from 5 m depth on the north shore of Mo\u2019orea, French Polynesia (17\u00b0 28'\u00a033\"S, 149\u00b0 49' 20\"W).\u00a0Following 5 d of acclimation, 24 of the corals were selected randomly for removal of all trapeziid crabs and alpheid shrimps\u00a0 (\"minus-ectosymbiont\") by probing with a wooden stick (3 mm diameter). Crabs and shrimp were left in the other 24 corals (\"plus-ectosymbiont\"), which were subjected to a procedural control in which they were probed with a wooden stick. Incubation setup:\u00a0Twelve mesocosm tanks (150 L volume with sand-filtered seawater pumped from 14 m depth in Cooks\u2019 Bay and supplied to the tanks at ~200 mL min\u22121) were used in this experiment, with four colonies per tank in a split-plot design contrasting plus-ectosymbiont (n = 2 colonies/tank) and minus-ectosymbiont (n = 2 colonies/tank) corals. Daily measures of salinity, pH, and total alkalinity (TA): Temperature was recorded with a thermometer (\u00b1 0.05 degrees C; ThermoFisher Traceable) and salinity was measured with a bench-top conductivity meter (\u00b1 0.1 psu, YSI 3100). TA and pH were measured within one hour of sample collection. Seawater collected for TA was filtered (0.45 um; Chanson and Millero, 2007) and analyzed using potentiometric titrations with 0.1-N HCl using an automatic titrator (Mettler Toledo T50) (Dickson et al., 2007). Seawater pH was measured with spectrophotometric methods (Nemzer and Dickson, 2005).
attribute	NC_GLOBAL	awards_0_award_nid	String	520630
attribute	NC_GLOBAL	awards_0_award_number	String	OCE-1026851
attribute	NC_GLOBAL	awards_0_data_url	String	http://www.nsf.gov/awardsearch/showAward?AWD_ID=1026851
attribute	NC_GLOBAL	awards_0_funder_name	String	NSF Division of Ocean Sciences
attribute	NC_GLOBAL	awards_0_funding_acronym	String	NSF OCE
attribute	NC_GLOBAL	awards_0_funding_source_nid	String	355
attribute	NC_GLOBAL	awards_0_program_manager	String	David L. Garrison
attribute	NC_GLOBAL	awards_0_program_manager_nid	String	50534
attribute	NC_GLOBAL	awards_1_award_nid	String	526719
attribute	NC_GLOBAL	awards_1_award_number	String	OCE-1236905
attribute	NC_GLOBAL	awards_1_data_url	String	http://www.nsf.gov/awardsearch/showAward?AWD_ID=1236905
attribute	NC_GLOBAL	awards_1_funder_name	String	NSF Division of Ocean Sciences
attribute	NC_GLOBAL	awards_1_funding_acronym	String	NSF OCE
attribute	NC_GLOBAL	awards_1_funding_source_nid	String	355
attribute	NC_GLOBAL	awards_1_program_manager	String	David L. Garrison
attribute	NC_GLOBAL	awards_1_program_manager_nid	String	50534
attribute	NC_GLOBAL	awards_2_award_nid	String	536317
attribute	NC_GLOBAL	awards_2_award_number	String	OCE-1415268
attribute	NC_GLOBAL	awards_2_data_url	String	http://www.nsf.gov/awardsearch/showAward.do?AwardNumber=1415268
attribute	NC_GLOBAL	awards_2_funder_name	String	NSF Division of Ocean Sciences
attribute	NC_GLOBAL	awards_2_funding_acronym	String	NSF OCE
attribute	NC_GLOBAL	awards_2_funding_source_nid	String	355
attribute	NC_GLOBAL	awards_2_program_manager	String	David L. Garrison
attribute	NC_GLOBAL	awards_2_program_manager_nid	String	50534
attribute	NC_GLOBAL	cdm_data_type	String	Other
attribute	NC_GLOBAL	comment	String	Doo et al. 2018, Coral Reefs - Mesocosm chemistry data PI: Robert Carpenter (CSUN) Co-PI: Peter Edmunds (CSUN) Contact: Steve Doo (CSUN) Version date: 16 October 2018
attribute	NC_GLOBAL	Conventions	String	COARDS, CF-1.6, ACDD-1.3
attribute	NC_GLOBAL	creator_email	String	info at bco-dmo.org
attribute	NC_GLOBAL	creator_name	String	BCO-DMO
attribute	NC_GLOBAL	creator_type	String	institution
attribute	NC_GLOBAL	creator_url	String	https://www.bco-dmo.org/
attribute	NC_GLOBAL	data_source	String	extract_data_as_tsv version 2.3 19 Dec 2019
attribute	NC_GLOBAL	date_created	String	2018-10-16T18:14:11Z
attribute	NC_GLOBAL	date_modified	String	2019-03-15T16:34:22Z
attribute	NC_GLOBAL	defaultDataQuery	String	&time<now
attribute	NC_GLOBAL	doi	String	10.1575/1912/bco-dmo.748140.1
attribute	NC_GLOBAL	infoUrl	String	https://www.bco-dmo.org/dataset/748140
attribute	NC_GLOBAL	institution	String	BCO-DMO
attribute	NC_GLOBAL	instruments_0_acronym	String	Automatic titrator
attribute	NC_GLOBAL	instruments_0_dataset_instrument_nid	String	748167
attribute	NC_GLOBAL	instruments_0_description	String	Instruments that incrementally add quantified aliquots of a reagent to a sample until the end-point of a chemical reaction is reached.
attribute	NC_GLOBAL	instruments_0_instrument_external_identifier	String	https://vocab.nerc.ac.uk/collection/L05/current/LAB12/
attribute	NC_GLOBAL	instruments_0_instrument_name	String	Automatic titrator
attribute	NC_GLOBAL	instruments_0_instrument_nid	String	682
attribute	NC_GLOBAL	instruments_0_supplied_name	String	Mettler Toledo T50
attribute	NC_GLOBAL	instruments_1_acronym	String	Light Meter
attribute	NC_GLOBAL	instruments_1_dataset_instrument_nid	String	748170
attribute	NC_GLOBAL	instruments_1_description	String	Light meters are instruments that measure light intensity. Common units of measure for light intensity are umol/m2/s or uE/m2/s (micromoles per meter squared per second or microEinsteins per meter squared per second). (example: LI-COR 250A)
attribute	NC_GLOBAL	instruments_1_instrument_name	String	Light Meter
attribute	NC_GLOBAL	instruments_1_instrument_nid	String	703
attribute	NC_GLOBAL	instruments_1_supplied_name	String	Li-Cor LI-1400 m and 4p LI-193 sensors
attribute	NC_GLOBAL	instruments_2_acronym	String	Spectrophotometer
attribute	NC_GLOBAL	instruments_2_dataset_instrument_description	String	pH was measured with a spectrophotometer
attribute	NC_GLOBAL	instruments_2_dataset_instrument_nid	String	748171
attribute	NC_GLOBAL	instruments_2_description	String	An instrument used to measure the relative absorption of electromagnetic radiation of different wavelengths in the near infra-red, visible and ultraviolet wavebands by samples.
attribute	NC_GLOBAL	instruments_2_instrument_external_identifier	String	https://vocab.nerc.ac.uk/collection/L05/current/LAB20/
attribute	NC_GLOBAL	instruments_2_instrument_name	String	Spectrophotometer
attribute	NC_GLOBAL	instruments_2_instrument_nid	String	707
attribute	NC_GLOBAL	instruments_3_acronym	String	Conductivity Meter
attribute	NC_GLOBAL	instruments_3_dataset_instrument_nid	String	748173
attribute	NC_GLOBAL	instruments_3_description	String	Conductivity Meter - An electrical conductivity meter (EC meter) measures the electrical conductivity in a solution. Commonly used in hydroponics, aquaculture and freshwater systems to monitor the amount of nutrients, salts or impurities in the water.
attribute	NC_GLOBAL	instruments_3_instrument_name	String	Conductivity Meter
attribute	NC_GLOBAL	instruments_3_instrument_nid	String	719
attribute	NC_GLOBAL	instruments_3_supplied_name	String	YSI 3100
attribute	NC_GLOBAL	instruments_4_dataset_instrument_nid	String	748168
attribute	NC_GLOBAL	instruments_4_description	String	An instrument that measures temperature digitally.
attribute	NC_GLOBAL	instruments_4_instrument_name	String	digital thermometer
attribute	NC_GLOBAL	instruments_4_instrument_nid	String	685040
attribute	NC_GLOBAL	instruments_4_supplied_name	String	ThermoFisher Traceable
attribute	NC_GLOBAL	keywords	String	bco, bco-dmo, biological, chemical, chemistry, data, dataset, date, density, dmo, earth, Earth Science > Oceans > Ocean Chemistry > pH, Earth Science > Oceans > Salinity/Density > Salinity, erddap, light, management, ocean, oceanography, oceans, office, practical, preliminary, reported, salinity, scale, science, sea, sea_water_ph_reported_on_total_scale, sea_water_practical_salinity, seawater, tank, Tank_no, temperature, time, total, water
attribute	NC_GLOBAL	keywords_vocabulary	String	GCMD Science Keywords
attribute	NC_GLOBAL	license	String	https://www.bco-dmo.org/dataset/748140/license
attribute	NC_GLOBAL	metadata_source	String	https://www.bco-dmo.org/api/dataset/748140
attribute	NC_GLOBAL	param_mapping	String	{'748140': {'Date': 'flag - time'}}
attribute	NC_GLOBAL	parameter_source	String	https://www.bco-dmo.org/mapserver/dataset/748140/parameters
attribute	NC_GLOBAL	people_0_affiliation	String	California State University Northridge
attribute	NC_GLOBAL	people_0_affiliation_acronym	String	CSU-Northridge
attribute	NC_GLOBAL	people_0_person_name	String	Robert Carpenter
attribute	NC_GLOBAL	people_0_person_nid	String	51535
attribute	NC_GLOBAL	people_0_role	String	Principal Investigator
attribute	NC_GLOBAL	people_0_role_type	String	originator
attribute	NC_GLOBAL	people_1_affiliation	String	California State University Northridge
attribute	NC_GLOBAL	people_1_affiliation_acronym	String	CSU-Northridge
attribute	NC_GLOBAL	people_1_person_name	String	Peter J. Edmunds
attribute	NC_GLOBAL	people_1_person_nid	String	51536
attribute	NC_GLOBAL	people_1_role	String	Co-Principal Investigator
attribute	NC_GLOBAL	people_1_role_type	String	originator
attribute	NC_GLOBAL	people_2_affiliation	String	California State University Northridge
attribute	NC_GLOBAL	people_2_affiliation_acronym	String	CSU-Northridge
attribute	NC_GLOBAL	people_2_person_name	String	Steve Doo
attribute	NC_GLOBAL	people_2_person_nid	String	748154
attribute	NC_GLOBAL	people_2_role	String	Contact
attribute	NC_GLOBAL	people_2_role_type	String	related
attribute	NC_GLOBAL	people_3_affiliation	String	Woods Hole Oceanographic Institution
attribute	NC_GLOBAL	people_3_affiliation_acronym	String	WHOI BCO-DMO
attribute	NC_GLOBAL	people_3_person_name	String	Shannon Rauch
attribute	NC_GLOBAL	people_3_person_nid	String	51498
attribute	NC_GLOBAL	people_3_role	String	BCO-DMO Data Manager
attribute	NC_GLOBAL	people_3_role_type	String	related
attribute	NC_GLOBAL	project	String	MCR LTER,OA coral adaptation
attribute	NC_GLOBAL	projects_0_acronym	String	MCR LTER
attribute	NC_GLOBAL	projects_0_description	String	From http://www.lternet.edu/sites/mcr/ and http://mcr.lternet.edu/: The Moorea Coral Reef LTER site encompasses the coral reef complex that surrounds the island of Moorea, French Polynesia (17°30'S, 149°50'W). Moorea is a small, triangular volcanic island 20 km west of Tahiti in the Society Islands of French Polynesia. An offshore barrier reef forms a system of shallow (mean depth ~ 5-7 m), narrow (~0.8-1.5 km wide) lagoons around the 60 km perimeter of Moorea. All major coral reef types (e.g., fringing reef, lagoon patch reefs, back reef, barrier reef and fore reef) are present and accessible by small boat. The MCR LTER was established in 2004 by the US National Science Foundation (NSF) and is a partnership between the University of California Santa Barbara and California State University, Northridge. MCR researchers include marine scientists from the UC Santa Barbara, CSU Northridge, UC Davis, UC Santa Cruz, UC San Diego, CSU San Marcos, Duke University and the University of Hawaii. Field operations are conducted from the UC Berkeley Richard B. Gump South Pacific Research Station on the island of Moorea, French Polynesia. MCR LTER Data: The Moorea Coral Reef (MCR) LTER data are managed by and available directly from the MCR project data site URL shown above.  The datasets listed below were collected at or near the MCR LTER sampling locations, and funded by NSF OCE as ancillary projects related to the MCR LTER core research themes. The following publications and data resulted from this project: 2012 Edmunds PJ. Effect of pCO2 on the growth, respiration, and photophysiology of massive Porites spp. in Moorea, French Polynesia. Marine Biology 159: 2149-2160. doi:10.1594/PANGAEA.820375Porites growth_respiration_photophysDownload complete data for this publication (Excel file)
attribute	NC_GLOBAL	projects_0_geolocation	String	Island of Moorea, French Polynesia
attribute	NC_GLOBAL	projects_0_name	String	Moorea Coral Reef Long-Term Ecological Research site
attribute	NC_GLOBAL	projects_0_project_nid	String	2222
attribute	NC_GLOBAL	projects_0_project_website	String	http://mcr.lternet.edu/
attribute	NC_GLOBAL	projects_0_start_date	String	2004-09
attribute	NC_GLOBAL	projects_1_acronym	String	OA coral adaptation
attribute	NC_GLOBAL	projects_1_description	String	Extracted from the NSF award abstract: This project focuses on the most serious threat to marine ecosystems, Ocean Acidification (OA), and addresses the problem in the most diverse and beautiful ecosystem on the planet, coral reefs. The research utilizes Moorea, French Polynesia as a model system, and builds from the NSF investment in the Moorea Coral Reef Long Term Ecological Research Site (LTER) to exploit physical and biological monitoring of coral reefs as a context for a program of studies focused on the ways in which OA will affect corals, calcified algae, and coral reef ecosystems. The project builds on a four-year NSF award with research in five new directions: (1) experiments of year-long duration, (2) studies of coral reefs to 20-m depth, (3) experiments in which carbon dioxide will be administered to plots of coral reef underwater, (4) measurements of the capacity of coral reef organisms to change through evolutionary and induced responses to improve their resistance to OA, and (5) application of emerging theories to couple studies of individual organisms to studies of whole coral reefs. Broader impacts will accrue through a better understanding of the ways in which OA will affect coral reefs that are the poster child for demonstrating climate change effects in the marine environment, and which provide income, food, and coastal protection to millions of people living in coastal areas, including in the United States.  This project focuses on the effects of Ocean Acidification on tropical coral reefs and builds on a program of research results from an existing 4-year award, and closely interfaces with the technical, hardware, and information infrastructure provided through the Moorea Coral Reef (MCR) LTER. The MCR-LTER, provides an unparalleled opportunity to partner with a study of OA effects on a coral reef with a location that arguably is better instrumented and studied in more ecological detail than any other coral reef in the world. Therefore, the results can be both contextualized by a high degree of ecological and physical relevance, and readily integrated into emerging theory seeking to predict the structure and function of coral reefs in warmer and more acidic future oceans. The existing award has involved a program of study in Moorea that has focused mostly on short-term organismic and ecological responses of corals and calcified algae, experiments conducted in mesocosms and flumes, and measurements of reef-scale calcification. This new award involves three new technical advances: for the first time, experiments will be conducted of year-long duration in replicate outdoor flumes; CO2 treatments will be administered to fully intact reef ecosystems in situ using replicated underwater flumes; and replicated common garden cultivation techniques will be used to explore within-species genetic variation in the response to OA conditions. Together, these tools will be used to support research on corals and calcified algae in three thematic areas: (1) tests for long-term (1 year) effects of OA on growth, performance, and fitness, (2) tests for depth-dependent effects of OA on reef communities at 20-m depth where light regimes are attenuated compared to shallow water, and (3) tests for beneficial responses to OA through intrinsic, within-species genetic variability and phenotypic plasticity. Some of the key experiments in these thematic areas will be designed to exploit integral projection models (IPMs) to couple organism with community responses, and to support the use of the metabolic theory of ecology (MTE) to address scale-dependence of OA effects on coral reef organisms and the function of the communities they build. The following publications and data resulted from this project: Comeau S, Carpenter RC, Lantz CA, Edmunds PJ. (2016) Parameterization of the response of calcification to temperature and pCO2 in the coral Acropora pulchra and the alga Lithophyllum kotschyanum. Coral Reefs 2016. DOI 10.1007/s00338-016-1425-0.calcification rates (2014)calcification rates (2010) Comeau, S., Carpenter, R.C., Edmunds, P.J.  (2016) Effects of pCO2 on photosynthesis and respiration of tropical scleractinian corals and calcified algae. ICES Journal of Marine Science doi:10.1093/icesjms/fsv267.respiration and photosynthesis Irespiration and photosynthesis II Evensen, N.R. & Edmunds P. J. (2016) Interactive effects of ocean acidification and neighboring corals on the growth of Pocillopora verrucosa. Marine Biology, 163:148. doi: 10.1007/s00227-016-2921-zcoral growthseawater chemistrycoral colony interactions
attribute	NC_GLOBAL	projects_1_end_date	String	2018-12
attribute	NC_GLOBAL	projects_1_geolocation	String	Moorea, French Polynesia
attribute	NC_GLOBAL	projects_1_name	String	Collaborative Research: Ocean Acidification and Coral Reefs: Scale Dependence and Adaptive Capacity
attribute	NC_GLOBAL	projects_1_project_nid	String	535322
attribute	NC_GLOBAL	projects_1_project_website	String	http://mcr.lternet.edu
attribute	NC_GLOBAL	projects_1_start_date	String	2015-01
attribute	NC_GLOBAL	publisher_name	String	Biological and Chemical Oceanographic Data Management Office (BCO-DMO)
attribute	NC_GLOBAL	publisher_type	String	institution
attribute	NC_GLOBAL	sourceUrl	String	(local files)
attribute	NC_GLOBAL	standard_name_vocabulary	String	CF Standard Name Table v55
attribute	NC_GLOBAL	summary	String	Seawater chemistry treatment conditions from experiments on coral calcification.
attribute	NC_GLOBAL	time_coverage_end	String	2017-02-06
attribute	NC_GLOBAL	time_coverage_start	String	2017-01-21
attribute	NC_GLOBAL	title	String	[Doo et al. 2018, Coral Reefs - Mesocosm chemistry data] - Seawater chemistry treatment conditions (Moorea Coral Reef Long-Term Ecological Research site)
attribute	NC_GLOBAL	version	String	1
attribute	NC_GLOBAL	xml_source	String	osprey2erddap.update_xml() v1.3
variable	time		double
attribute	time	_CoordinateAxisType	String	Time
attribute	time	actual_range	double	1.4849568E9, 1.4863392E9
attribute	time	axis	String	T
attribute	time	bcodmo_name	String	date
attribute	time	description	String	Calender date formatted as yyyy-mm-dd
attribute	time	ioos_category	String	Time
attribute	time	long_name	String	Date
attribute	time	nerc_identifier	String	https://vocab.nerc.ac.uk/collection/P01/current/ADATAA01/
attribute	time	source_name	String	Date
attribute	time	standard_name	String	time
attribute	time	time_origin	String	01-JAN-1970 00:00:00
attribute	time	time_precision	String	1970-01-01
attribute	time	units	String	seconds since 1970-01-01T00:00:00Z
variable	Tank_no		String
attribute	Tank_no	bcodmo_name	String	tank
attribute	Tank_no	description	String	Mesocosm tank identification number
attribute	Tank_no	long_name	String	Tank No
attribute	Tank_no	units	String	unitless
variable	TA		float
attribute	TA	_FillValue	float	NaN
attribute	TA	actual_range	float	2200.91, 2349.84
attribute	TA	bcodmo_name	String	TALK
attribute	TA	description	String	Total alkalinity
attribute	TA	long_name	String	TA
attribute	TA	nerc_identifier	String	https://vocab.nerc.ac.uk/collection/P01/current/MDMAP014/
attribute	TA	units	String	micromoles per kilogram (umol kg-1)
variable	pH		float
attribute	pH	_FillValue	float	NaN
attribute	pH	actual_range	float	7.6049, 8.0604
attribute	pH	bcodmo_name	String	pH
attribute	pH	colorBarMaximum	double	9.0
attribute	pH	colorBarMinimum	double	7.0
attribute	pH	description	String	pH, measured spectrophotometrically
attribute	pH	long_name	String	Sea Water Ph Reported On Total Scale
attribute	pH	nerc_identifier	String	https://vocab.nerc.ac.uk/collection/P01/current/PHXXZZXX/
attribute	pH	units	String	unitless (pH scale)
variable	Salinity		float
attribute	Salinity	_FillValue	float	NaN
attribute	Salinity	actual_range	float	34.91, 35.48
attribute	Salinity	bcodmo_name	String	sal
attribute	Salinity	colorBarMaximum	double	37.0
attribute	Salinity	colorBarMinimum	double	32.0
attribute	Salinity	description	String	Salinity
attribute	Salinity	long_name	String	Sea Water Practical Salinity
attribute	Salinity	nerc_identifier	String	https://vocab.nerc.ac.uk/collection/P01/current/PSALST01/
attribute	Salinity	units	String	PSU
variable	Temperature		float
attribute	Temperature	_FillValue	float	NaN
attribute	Temperature	actual_range	float	25.7, 30.9
attribute	Temperature	bcodmo_name	String	temperature
attribute	Temperature	description	String	Temperature
attribute	Temperature	long_name	String	Temperature
attribute	Temperature	nerc_identifier	String	https://vocab.nerc.ac.uk/collection/P01/current/TEMPP901/
attribute	Temperature	units	String	degrees Celsius
variable	Light		float
attribute	Light	_FillValue	float	NaN
attribute	Light	actual_range	float	415.4, 585.2
attribute	Light	bcodmo_name	String	irradiance
attribute	Light	description	String	Irradiance
attribute	Light	long_name	String	Light
attribute	Light	nerc_identifier	String	https://vocab.nerc.ac.uk/collection/P02/current/VSRW/
attribute	Light	units	String	micromoles photons per meter squared per second (umol photons m-2 sec -1)

The information in the table above is also available in other file formats (.csv, .htmlTable, .itx, .json, .jsonlCSV1, .jsonlCSV, .jsonlKVP, .mat, .nc, .nccsv, .tsv, .xhtml) via a RESTful web service.