ERDDAP > info > bcodmo_dataset_748383

Grid DAP Data	Sub- set	Table DAP Data	Make A Graph	W M S	Source Data Files	Acces- sible	Title	Sum- mary	FGDC, ISO, Metadata	Back- ground Info	RSS	E mail	Institution	Dataset ID
		data	graph		files	public	[Doo et al. 2018, Coral Reefs - Mesocosm buoyant weight data] - Calcification of coral from the start and end of experiments under elevated concentrations of temperature and carbon dioxide (Moorea Coral Reef Long-Term Ecological Research site)		I   M	background			BCO-DMO	bcodmo_dataset_748383

The Dataset's Variables and Attributes

Row Type	Variable Name	Attribute Name	Data Type	Value
attribute	NC_GLOBAL	access_formats	String	.htmlTable,.csv,.json,.mat,.nc,.tsv
attribute	NC_GLOBAL	acquisition_description	String	Collection and experimental setup methods extracted from Doo et al. (2018): Colony collection: In January 2017, 48 colonies of Pocillopora verrucosa (Ellis and Solander 1786) were collected randomly on scuba from 5 m depth on the north shore of Mo\u2019orea, French Polynesia (17\u00b0 28'\u00a033\"S, 149\u00b0 49' 20\"W).\u00a0Following 5 d of acclimation, 24 of the corals were selected randomly for removal of all trapeziid crabs and alpheid shrimps\u00a0 (\"minus-ectosymbiont\") by probing with a wooden stick (3 mm diameter). Crabs and shrimp were left in the other 24 corals (\"plus-ectosymbiont\"), which were subjected to a procedural control in which they were probed with a wooden stick. Incubation setup:\u00a0Twelve mesocosm tanks (150 L volume with sand-filtered seawater pumped from 14 m depth in Cooks\u2019 Bay and supplied to the tanks at ~200 mL min\u22121) were used in this experiment, with four colonies per tank in a split-plot design contrasting plus-ectosymbiont (n = 2 colonies/tank) and minus-ectosymbiont (n = 2 colonies/tank) corals. Daily measures of salinity, pH, and total alkalinity (TA):\u00a0 Temperature was recorded with a thermometer (\u00b1 0.05 degrees C; ThermoFisher Traceable) and salinity was measured with a bench-top conductivity meter (\u00b1 0.1 psu, YSI 3100). TA and pH were measured within one hour of sample collection. Seawater collected for TA was filtered (0.45 um; Chanson and Millero, 2007) and analyzed using potentiometric titrations with 0.1-N HCl using an automatic titrator (Mettler Toledo T50) (Dickson et al., 2007). Seawater pH was measured with spectrophotometric methods (Nemzer and Dickson, 2005). Buoyant weight:\u00a0was measured at start and end of experiment and difference between the two values was used to calculate an increase in dry skeletal weight (i.e., calcification) using the density of aragonite, and then normalized to the surface area of each coral (Davies 1989).
attribute	NC_GLOBAL	awards_0_award_nid	String	520630
attribute	NC_GLOBAL	awards_0_award_number	String	OCE-1026851
attribute	NC_GLOBAL	awards_0_data_url	String	http://www.nsf.gov/awardsearch/showAward?AWD_ID=1026851
attribute	NC_GLOBAL	awards_0_funder_name	String	NSF Division of Ocean Sciences
attribute	NC_GLOBAL	awards_0_funding_acronym	String	NSF OCE
attribute	NC_GLOBAL	awards_0_funding_source_nid	String	355
attribute	NC_GLOBAL	awards_0_program_manager	String	David L. Garrison
attribute	NC_GLOBAL	awards_0_program_manager_nid	String	50534
attribute	NC_GLOBAL	awards_1_award_nid	String	526719
attribute	NC_GLOBAL	awards_1_award_number	String	OCE-1236905
attribute	NC_GLOBAL	awards_1_data_url	String	http://www.nsf.gov/awardsearch/showAward?AWD_ID=1236905
attribute	NC_GLOBAL	awards_1_funder_name	String	NSF Division of Ocean Sciences
attribute	NC_GLOBAL	awards_1_funding_acronym	String	NSF OCE
attribute	NC_GLOBAL	awards_1_funding_source_nid	String	355
attribute	NC_GLOBAL	awards_1_program_manager	String	David L. Garrison
attribute	NC_GLOBAL	awards_1_program_manager_nid	String	50534
attribute	NC_GLOBAL	awards_2_award_nid	String	536317
attribute	NC_GLOBAL	awards_2_award_number	String	OCE-1415268
attribute	NC_GLOBAL	awards_2_data_url	String	http://www.nsf.gov/awardsearch/showAward.do?AwardNumber=1415268
attribute	NC_GLOBAL	awards_2_funder_name	String	NSF Division of Ocean Sciences
attribute	NC_GLOBAL	awards_2_funding_acronym	String	NSF OCE
attribute	NC_GLOBAL	awards_2_funding_source_nid	String	355
attribute	NC_GLOBAL	awards_2_program_manager	String	David L. Garrison
attribute	NC_GLOBAL	awards_2_program_manager_nid	String	50534
attribute	NC_GLOBAL	cdm_data_type	String	Other
attribute	NC_GLOBAL	comment	String	Doo et al. 2018, Coral Reefs - Mesocosm buoyant weight data PI: Robert Carpenter (CSUN) Co-PI: Peter Edmunds (CSUN) Contact: Steve Doo (CSUN) Version date: 16 October 2018
attribute	NC_GLOBAL	Conventions	String	COARDS, CF-1.6, ACDD-1.3
attribute	NC_GLOBAL	creator_email	String	info at bco-dmo.org
attribute	NC_GLOBAL	creator_name	String	BCO-DMO
attribute	NC_GLOBAL	creator_type	String	institution
attribute	NC_GLOBAL	creator_url	String	https://www.bco-dmo.org/
attribute	NC_GLOBAL	data_source	String	extract_data_as_tsv version 2.3 19 Dec 2019
attribute	NC_GLOBAL	date_created	String	2018-10-17T17:19:09Z
attribute	NC_GLOBAL	date_modified	String	2019-03-15T16:33:54Z
attribute	NC_GLOBAL	defaultDataQuery	String	&time<now
attribute	NC_GLOBAL	doi	String	10.1575/1912/bco-dmo.748383.1
attribute	NC_GLOBAL	infoUrl	String	https://www.bco-dmo.org/dataset/748383
attribute	NC_GLOBAL	institution	String	BCO-DMO
attribute	NC_GLOBAL	instruments_0_acronym	String	Scale
attribute	NC_GLOBAL	instruments_0_dataset_instrument_nid	String	748454
attribute	NC_GLOBAL	instruments_0_description	String	An instrument used to measure weight or mass.
attribute	NC_GLOBAL	instruments_0_instrument_external_identifier	String	https://vocab.nerc.ac.uk/collection/L05/current/LAB13/
attribute	NC_GLOBAL	instruments_0_instrument_name	String	Scale
attribute	NC_GLOBAL	instruments_0_instrument_nid	String	714
attribute	NC_GLOBAL	instruments_0_supplied_name	String	Mettler PB153-S balance
attribute	NC_GLOBAL	keywords	String	bco, bco-dmo, biological, chemical, coral, Coral_number, crab, data, dataset, dmo, erddap, growth, management, number, oceanography, office, preliminary, temperature
attribute	NC_GLOBAL	license	String	https://www.bco-dmo.org/dataset/748383/license
attribute	NC_GLOBAL	metadata_source	String	https://www.bco-dmo.org/api/dataset/748383
attribute	NC_GLOBAL	param_mapping	String	{'748383': {}}
attribute	NC_GLOBAL	parameter_source	String	https://www.bco-dmo.org/mapserver/dataset/748383/parameters
attribute	NC_GLOBAL	people_0_affiliation	String	California State University Northridge
attribute	NC_GLOBAL	people_0_affiliation_acronym	String	CSU-Northridge
attribute	NC_GLOBAL	people_0_person_name	String	Robert Carpenter
attribute	NC_GLOBAL	people_0_person_nid	String	51535
attribute	NC_GLOBAL	people_0_role	String	Principal Investigator
attribute	NC_GLOBAL	people_0_role_type	String	originator
attribute	NC_GLOBAL	people_1_affiliation	String	California State University Northridge
attribute	NC_GLOBAL	people_1_affiliation_acronym	String	CSU-Northridge
attribute	NC_GLOBAL	people_1_person_name	String	Peter J. Edmunds
attribute	NC_GLOBAL	people_1_person_nid	String	51536
attribute	NC_GLOBAL	people_1_role	String	Co-Principal Investigator
attribute	NC_GLOBAL	people_1_role_type	String	originator
attribute	NC_GLOBAL	people_2_affiliation	String	California State University Northridge
attribute	NC_GLOBAL	people_2_affiliation_acronym	String	CSU-Northridge
attribute	NC_GLOBAL	people_2_person_name	String	Steve Doo
attribute	NC_GLOBAL	people_2_person_nid	String	748154
attribute	NC_GLOBAL	people_2_role	String	Contact
attribute	NC_GLOBAL	people_2_role_type	String	related
attribute	NC_GLOBAL	people_3_affiliation	String	Woods Hole Oceanographic Institution
attribute	NC_GLOBAL	people_3_affiliation_acronym	String	WHOI BCO-DMO
attribute	NC_GLOBAL	people_3_person_name	String	Shannon Rauch
attribute	NC_GLOBAL	people_3_person_nid	String	51498
attribute	NC_GLOBAL	people_3_role	String	BCO-DMO Data Manager
attribute	NC_GLOBAL	people_3_role_type	String	related
attribute	NC_GLOBAL	project	String	MCR LTER,OA coral adaptation
attribute	NC_GLOBAL	projects_0_acronym	String	MCR LTER
attribute	NC_GLOBAL	projects_0_description	String	From http://www.lternet.edu/sites/mcr/ and http://mcr.lternet.edu/: The Moorea Coral Reef LTER site encompasses the coral reef complex that surrounds the island of Moorea, French Polynesia (17°30'S, 149°50'W). Moorea is a small, triangular volcanic island 20 km west of Tahiti in the Society Islands of French Polynesia. An offshore barrier reef forms a system of shallow (mean depth ~ 5-7 m), narrow (~0.8-1.5 km wide) lagoons around the 60 km perimeter of Moorea. All major coral reef types (e.g., fringing reef, lagoon patch reefs, back reef, barrier reef and fore reef) are present and accessible by small boat. The MCR LTER was established in 2004 by the US National Science Foundation (NSF) and is a partnership between the University of California Santa Barbara and California State University, Northridge. MCR researchers include marine scientists from the UC Santa Barbara, CSU Northridge, UC Davis, UC Santa Cruz, UC San Diego, CSU San Marcos, Duke University and the University of Hawaii. Field operations are conducted from the UC Berkeley Richard B. Gump South Pacific Research Station on the island of Moorea, French Polynesia. MCR LTER Data: The Moorea Coral Reef (MCR) LTER data are managed by and available directly from the MCR project data site URL shown above.  The datasets listed below were collected at or near the MCR LTER sampling locations, and funded by NSF OCE as ancillary projects related to the MCR LTER core research themes. The following publications and data resulted from this project: 2012 Edmunds PJ. Effect of pCO2 on the growth, respiration, and photophysiology of massive Porites spp. in Moorea, French Polynesia. Marine Biology 159: 2149-2160. doi:10.1594/PANGAEA.820375Porites growth_respiration_photophysDownload complete data for this publication (Excel file)
attribute	NC_GLOBAL	projects_0_geolocation	String	Island of Moorea, French Polynesia
attribute	NC_GLOBAL	projects_0_name	String	Moorea Coral Reef Long-Term Ecological Research site
attribute	NC_GLOBAL	projects_0_project_nid	String	2222
attribute	NC_GLOBAL	projects_0_project_website	String	http://mcr.lternet.edu/
attribute	NC_GLOBAL	projects_0_start_date	String	2004-09
attribute	NC_GLOBAL	projects_1_acronym	String	OA coral adaptation
attribute	NC_GLOBAL	projects_1_description	String	Extracted from the NSF award abstract: This project focuses on the most serious threat to marine ecosystems, Ocean Acidification (OA), and addresses the problem in the most diverse and beautiful ecosystem on the planet, coral reefs. The research utilizes Moorea, French Polynesia as a model system, and builds from the NSF investment in the Moorea Coral Reef Long Term Ecological Research Site (LTER) to exploit physical and biological monitoring of coral reefs as a context for a program of studies focused on the ways in which OA will affect corals, calcified algae, and coral reef ecosystems. The project builds on a four-year NSF award with research in five new directions: (1) experiments of year-long duration, (2) studies of coral reefs to 20-m depth, (3) experiments in which carbon dioxide will be administered to plots of coral reef underwater, (4) measurements of the capacity of coral reef organisms to change through evolutionary and induced responses to improve their resistance to OA, and (5) application of emerging theories to couple studies of individual organisms to studies of whole coral reefs. Broader impacts will accrue through a better understanding of the ways in which OA will affect coral reefs that are the poster child for demonstrating climate change effects in the marine environment, and which provide income, food, and coastal protection to millions of people living in coastal areas, including in the United States.  This project focuses on the effects of Ocean Acidification on tropical coral reefs and builds on a program of research results from an existing 4-year award, and closely interfaces with the technical, hardware, and information infrastructure provided through the Moorea Coral Reef (MCR) LTER. The MCR-LTER, provides an unparalleled opportunity to partner with a study of OA effects on a coral reef with a location that arguably is better instrumented and studied in more ecological detail than any other coral reef in the world. Therefore, the results can be both contextualized by a high degree of ecological and physical relevance, and readily integrated into emerging theory seeking to predict the structure and function of coral reefs in warmer and more acidic future oceans. The existing award has involved a program of study in Moorea that has focused mostly on short-term organismic and ecological responses of corals and calcified algae, experiments conducted in mesocosms and flumes, and measurements of reef-scale calcification. This new award involves three new technical advances: for the first time, experiments will be conducted of year-long duration in replicate outdoor flumes; CO2 treatments will be administered to fully intact reef ecosystems in situ using replicated underwater flumes; and replicated common garden cultivation techniques will be used to explore within-species genetic variation in the response to OA conditions. Together, these tools will be used to support research on corals and calcified algae in three thematic areas: (1) tests for long-term (1 year) effects of OA on growth, performance, and fitness, (2) tests for depth-dependent effects of OA on reef communities at 20-m depth where light regimes are attenuated compared to shallow water, and (3) tests for beneficial responses to OA through intrinsic, within-species genetic variability and phenotypic plasticity. Some of the key experiments in these thematic areas will be designed to exploit integral projection models (IPMs) to couple organism with community responses, and to support the use of the metabolic theory of ecology (MTE) to address scale-dependence of OA effects on coral reef organisms and the function of the communities they build. The following publications and data resulted from this project: Comeau S, Carpenter RC, Lantz CA, Edmunds PJ. (2016) Parameterization of the response of calcification to temperature and pCO2 in the coral Acropora pulchra and the alga Lithophyllum kotschyanum. Coral Reefs 2016. DOI 10.1007/s00338-016-1425-0.calcification rates (2014)calcification rates (2010) Comeau, S., Carpenter, R.C., Edmunds, P.J.  (2016) Effects of pCO2 on photosynthesis and respiration of tropical scleractinian corals and calcified algae. ICES Journal of Marine Science doi:10.1093/icesjms/fsv267.respiration and photosynthesis Irespiration and photosynthesis II Evensen, N.R. & Edmunds P. J. (2016) Interactive effects of ocean acidification and neighboring corals on the growth of Pocillopora verrucosa. Marine Biology, 163:148. doi: 10.1007/s00227-016-2921-zcoral growthseawater chemistrycoral colony interactions
attribute	NC_GLOBAL	projects_1_end_date	String	2018-12
attribute	NC_GLOBAL	projects_1_geolocation	String	Moorea, French Polynesia
attribute	NC_GLOBAL	projects_1_name	String	Collaborative Research: Ocean Acidification and Coral Reefs: Scale Dependence and Adaptive Capacity
attribute	NC_GLOBAL	projects_1_project_nid	String	535322
attribute	NC_GLOBAL	projects_1_project_website	String	http://mcr.lternet.edu
attribute	NC_GLOBAL	projects_1_start_date	String	2015-01
attribute	NC_GLOBAL	publisher_name	String	Biological and Chemical Oceanographic Data Management Office (BCO-DMO)
attribute	NC_GLOBAL	publisher_type	String	institution
attribute	NC_GLOBAL	sourceUrl	String	(local files)
attribute	NC_GLOBAL	standard_name_vocabulary	String	CF Standard Name Table v55
attribute	NC_GLOBAL	summary	String	Calcification of coral from the start and end of experiments under elevated concentrations of temperature and carbon dioxide.
attribute	NC_GLOBAL	title	String	[Doo et al. 2018, Coral Reefs - Mesocosm buoyant weight data] - Calcification of coral from the start and end of experiments under elevated concentrations of temperature and carbon dioxide (Moorea Coral Reef Long-Term Ecological Research site)
attribute	NC_GLOBAL	version	String	1
attribute	NC_GLOBAL	xml_source	String	osprey2erddap.update_xml() v1.3
variable	Coral_number		byte
attribute	Coral_number	_FillValue	byte	127
attribute	Coral_number	actual_range	byte	1, 48
attribute	Coral_number	bcodmo_name	String	sample
attribute	Coral_number	colorBarMaximum	double	100.0
attribute	Coral_number	colorBarMinimum	double	0.0
attribute	Coral_number	description	String	Unique coral colony identification number
attribute	Coral_number	long_name	String	Coral Number
attribute	Coral_number	nerc_identifier	String	https://vocab.nerc.ac.uk/collection/P02/current/ACYC/
attribute	Coral_number	units	String	unitless
variable	pH		String
attribute	pH	bcodmo_name	String	treatment
attribute	pH	description	String	pH treatment
attribute	pH	long_name	String	pH
attribute	pH	units	String	unitless
variable	Temperature		String
attribute	Temperature	bcodmo_name	String	treatment
attribute	Temperature	description	String	Temperature treatment
attribute	Temperature	long_name	String	Temperature
attribute	Temperature	units	String	unitless
variable	Crab		String
attribute	Crab	bcodmo_name	String	treatment
attribute	Crab	description	String	Crab treatment: with (Yes) or without (No)
attribute	Crab	long_name	String	Crab
attribute	Crab	units	String	unitless
variable	Growth		double
attribute	Growth	_FillValue	double	NaN
attribute	Growth	actual_range	double	-0.01751436, 0.556493305
attribute	Growth	bcodmo_name	String	growth
attribute	Growth	description	String	Change in weight (g) obtained by buoyant weighing pre and post experiment, and later converted to mass of CaCO3 and normalized to surface area of coral tissue (Stimson and Kinzie 1991).
attribute	Growth	long_name	String	Growth
attribute	Growth	units	String	grams

The information in the table above is also available in other file formats (.csv, .htmlTable, .itx, .json, .jsonlCSV1, .jsonlCSV, .jsonlKVP, .mat, .nc, .nccsv, .tsv, .xhtml) via a RESTful web service.