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Grid DAP Data | Sub- set | Table DAP Data | Make A Graph | W M S | Source Data Files | Acces- sible | Title | Sum- mary | FGDC, ISO, Metadata | Back- ground Info | RSS | E | Institution | Dataset ID |
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data | graph | files | public | [DON_Oxidation] - Dissolved Organic Nitrogen oxidation collected on cruise SAV 17-16 in the South Atlantic Bight aboard the R/V Savannah from 2011 to 2017 (Collaborative Research: Direct Oxidation of Organic Nitrogen by Marine Ammonia Oxidizing Organisms) | F I M | background | BCO-DMO | bcodmo_dataset_767048 |
Row Type | Variable Name | Attribute Name | Data Type | Value |
---|---|---|---|---|
attribute | NC_GLOBAL | access_formats | String | .htmlTable,.csv,.json,.mat,.nc,.tsv,.esriCsv,.geoJson |
attribute | NC_GLOBAL | acquisition_description | String | Nutrient analysis \u00a0 Nutrient samples were filtered through 0.22 \u03bcm pore size Durapore\u00a0GVWP filters (Millipore Sigma) and frozen at \u221220_C immediately\u00a0after collection, then stored at \u221280_C until analysis.\u00a0Dissolved nitrate (NO3\u00a0\u2212), nitrite (NO2\u00a0\u2212), phosphate (PO4\u00a03\u2212), and\u00a0silicate (SiO4\u00a04\u2212) were measured using a Bran and Luebbe AA3\u00a0autoanalyzer as described previously (Wilkerson et al. 2015).\u00a0Ammonium and urea were measured manually using the\u00a0phenolhypochlorite method (Sol\u00f3rzano 1969) and the diacetylmonoxime\u00a0method (Rahmatullah and Boyde 1980; Mulvenna\u00a0and Savidge 1992), respectively.\u00a0 Oxidation rate measurements\u00a0 We used 15N-labeled substrates (98\u201399% 15N, Cambridge\u00a0Isotope Laboratories) to measure the oxidation of N supplied\u00a0as NH4+, urea, 1,2-diaminoethane (DAE), 1,3-diaminopropane\u00a0(DAP), 1,4-diaminobutane (putrescine, PUT), L-glutamic acid\u00a0(GLU), and L-arginine (ARG). 15N oxidation from NH4+, urea,\u00a0PUT, and GLU were measured extensively, whereas 15N oxidation\u00a0from DAE, DAP, and ARG was only measured at a subset\u00a0of stations (Supporting Information Table S1). GLU and ARG\u00a0were included as a control for remineralization, as their central\u00a0roles in microbial metabolism leads to rapid catabolism and\u00a0NH4\u00a0+ regeneration (Hollibaugh 1978; Goldman et al. 1987).\u00a0PUT was used in routine assessments of the oxidation of\u00a0polyamine-N because it is one of the most consistently detected\u00a0polyamines in seawater (Nishibori et al. 2001a, 2003; Lu\u00a0et al. 2014; Liu et al. 2015). Although spermine and spermidine\u00a0are also common in seawater, 15N-labeled stocks of these polyamines\u00a0were not commercially available. We measured the oxidation\u00a0of N from DAE and DAP to investigate the effect of\u00a0aliphatic chain length (which affects pKa) on oxidation rate.\u00a0 Duplicate seawater samples contained in 1-liter polycarbonate\u00a0or 250 mL high density polyethylene (HDPE) bottles\u00a0wrapped with aluminum foil (to exclude light) were\u00a0amended with 10\u201350 nM 15N-labeled substrate. Marsh\u00a0Landing samples were then placed in an incubator held at\u00a0in situ temperature in the dark. Samples taken at the Skidaway\u00a0dock were placed in a mesh bag and immersed at the\u00a0sea surface at the sampling site. Samples collected at sea\u00a0were incubated in a tank of flowing surface seawater or in an\u00a0incubator held at 18 C in the dark. Incubation bottles were sampled\u00a0for 15N analysis immediately after substrate addition and\u00a0again after a period of ~ 24 h. 15N samples were subsampled into\u00a050 mL polypropylene centrifuge tubes, frozen at \u221220_C, and\u00a0stored at \u221280_C until analysis. The 15N/14N ratios of the NO3\u00a0\u2212\u00a0plus NO2\u00a0\u2212 (NOX) pools (\u03b415NNOx) in the samples were measured\u00a0using the bacterial denitrifier method to convert NOX to nitrous\u00a0oxide (N2O; Sigman et al. 2001). The \u03b415N values of the N2O\u00a0produced were measured using a Finnigan MAT-252 isotope\u00a0ratio mass spectrometer coupled with a modified GasBench II interface (Casciotti et al. 2002; Beman et al. 2011; McIlvin\u00a0and Casciotti 2011). Oxidation rates were calculated using an\u00a0endpoint model (Beman et al. 2011; Damashek et al. 2016).\u00a0Since the substrates used were uniformly labeled with 15N, the\u00a0amount of the N added as the 15N spike (in \u03bcM) was multiplied\u00a0by the number of moles of 15N per mole of substrate, which\u00a0assumes that all of the N atoms have equal probability of being\u00a0oxidized. This is likely true for urea, DAE, DAP, and PUT, which\u00a0are symmetrical molecules, but not likely to be true for ARG,\u00a0which contains 4 N atoms (one in the \u03b1-amino position and\u00a0three in the guanidine structure of its R-group). Abiotic oxidation\u00a0of organic N was assessed by measuring 15NOX production\u00a0following 15N amendment and incubation of 0.22 \u03bcm filtered\u00a0seawater (as described above), and potential metabolism of\u00a0DON by the denitrifying bacteria used to convert NOX to N2O\u00a0was checked by adding 15N-labeled substrates into the bacterial\u00a0cultures prior to mass spectrometry.\u00a0 We were unable to measure the in situ concentrations of\u00a0the individual components of DON used in oxidation experiments,\u00a0other than urea. Based on previous measurements\u00a0made in the SAB (Lu et al. 2014; Liu et al. 2015), we assumed\u00a0concentrations of 1 nM and 0.25 nM for DAE, DAP and PUT,\u00a0and 10 nM and 5 nM for GLU and ARG, at inshore and\u00a0mid-shelf /shelf-break/oceanic stations, respectively. Rates of\u00a0polyamine and amino acid oxidation reported below should\u00a0therefore be considered potential rates, as amendments as low\u00a0as 10\u201350 nM are likely to increase substrate concentrations\u00a0substantially above in situ. Initial substrate 15N activity was\u00a0calculated using isotope mass balance using the known concentration\u00a0and 15N activity of the labeled substrates added\u00a0and assuming the concentrations described above and natural\u00a0abundance 15N activity (i.e., 0.3663 atom% 15N).\u00a0 |
attribute | NC_GLOBAL | awards_0_award_nid | String | 757586 |
attribute | NC_GLOBAL | awards_0_award_number | String | OCE-1537995 |
attribute | NC_GLOBAL | awards_0_data_url | String | http://www.nsf.gov/awardsearch/showAward.do?AwardNumber=1537995 |
attribute | NC_GLOBAL | awards_0_funder_name | String | NSF Division of Ocean Sciences |
attribute | NC_GLOBAL | awards_0_funding_acronym | String | NSF OCE |
attribute | NC_GLOBAL | awards_0_funding_source_nid | String | 355 |
attribute | NC_GLOBAL | awards_0_program_manager | String | Henrietta N Edmonds |
attribute | NC_GLOBAL | awards_0_program_manager_nid | String | 51517 |
attribute | NC_GLOBAL | awards_1_award_nid | String | 757590 |
attribute | NC_GLOBAL | awards_1_award_number | String | OCE-1538677 |
attribute | NC_GLOBAL | awards_1_data_url | String | http://www.nsf.gov/awardsearch/showAward.do?AwardNumber=1538677 |
attribute | NC_GLOBAL | awards_1_funder_name | String | NSF Division of Ocean Sciences |
attribute | NC_GLOBAL | awards_1_funding_acronym | String | NSF OCE |
attribute | NC_GLOBAL | awards_1_funding_source_nid | String | 355 |
attribute | NC_GLOBAL | awards_1_program_manager | String | Henrietta N Edmonds |
attribute | NC_GLOBAL | awards_1_program_manager_nid | String | 51517 |
attribute | NC_GLOBAL | cdm_data_type | String | Other |
attribute | NC_GLOBAL | comment | String | DON Oxidation data collected on cruise SAV 17-16 PI: James T. Hollibaugh Version: 2019-05-08 comment value a = Environmental data, bacterial 16S, thaumarchaeal 16S, AOB amoA, ammonia oxidation, and urea oxidation data were reported previously in Liu et al. (2015) or Tolar et al. (2017); |
attribute | NC_GLOBAL | Conventions | String | COARDS, CF-1.6, ACDD-1.3 |
attribute | NC_GLOBAL | creator_email | String | info at bco-dmo.org |
attribute | NC_GLOBAL | creator_name | String | BCO-DMO |
attribute | NC_GLOBAL | creator_type | String | institution |
attribute | NC_GLOBAL | creator_url | String | https://www.bco-dmo.org/ |
attribute | NC_GLOBAL | data_source | String | extract_data_as_tsv version 2.3 19 Dec 2019 |
attribute | NC_GLOBAL | date_created | String | 2019-05-08T14:21:19Z |
attribute | NC_GLOBAL | date_modified | String | 2019-06-21T18:12:18Z |
attribute | NC_GLOBAL | defaultDataQuery | String | &time<now |
attribute | NC_GLOBAL | doi | String | 10.1575/1912/bco-dmo.767048.1 |
attribute | NC_GLOBAL | Easternmost_Easting | double | -78.77 |
attribute | NC_GLOBAL | geospatial_lat_max | double | 31.99 |
attribute | NC_GLOBAL | geospatial_lat_min | double | 30.32 |
attribute | NC_GLOBAL | geospatial_lat_units | String | degrees_north |
attribute | NC_GLOBAL | geospatial_lon_max | double | -78.77 |
attribute | NC_GLOBAL | geospatial_lon_min | double | -81.36 |
attribute | NC_GLOBAL | geospatial_lon_units | String | degrees_east |
attribute | NC_GLOBAL | geospatial_vertical_max | double | 500.0 |
attribute | NC_GLOBAL | geospatial_vertical_min | double | 0.2 |
attribute | NC_GLOBAL | geospatial_vertical_positive | String | down |
attribute | NC_GLOBAL | geospatial_vertical_units | String | m |
attribute | NC_GLOBAL | infoUrl | String | https://www.bco-dmo.org/dataset/767048 |
attribute | NC_GLOBAL | institution | String | BCO-DMO |
attribute | NC_GLOBAL | instruments_0_acronym | String | CTD SBE 25 |
attribute | NC_GLOBAL | instruments_0_dataset_instrument_description | String | Water from multiple depths was collected using 12-liter Niskin bottles mounted on a rosette equipped with a Sea-Bird SBE25 CTD. Profiles of salinity, temperature, dissolved oxygen, fluorescence, and photosynthetically active radiation (PAR) were collected using the CTD system as described previously (Liu et al. 2018). |
attribute | NC_GLOBAL | instruments_0_dataset_instrument_nid | String | 767193 |
attribute | NC_GLOBAL | instruments_0_description | String | The Sea-Bird SBE 25 SEALOGGER CTD is battery powered and is typically used to record data in memory, eliminating the need for a large vessel, electrical sea cable, and on-board computer. All SBE 25s can also operate in real-time, transmitting data via an opto-isolated RS-232 serial port. Temperature and conductivity are measured by the SBE 3F Temperature sensor and SBE 4 Conductivity sensor (same as those used on the premium SBE 9plus CTD). The SBE 25 also includes the SBE 5P (plastic) or 5T (titanium) Submersible Pump and TC Duct. The pump-controlled, TC-ducted flow configuration significantly reduces salinity spiking caused by ship heave, and in calm waters allows slower descent rates for improved resolution of water column features. Pressure is measured by the modular SBE 29 Temperature Compensated Strain-Gauge Pressure sensor (available in eight depth ranges to suit the operating depth requirement). The SBE 25's modular design makes it easy to configure in the field for a wide range of auxiliary sensors, including optional dissolved oxygen (SBE 43), pH (SBE 18 or SBE 27), fluorescence, transmissivity, PAR, and optical backscatter sensors. More information from Sea-Bird Electronics: http:www.seabird.com. |
attribute | NC_GLOBAL | instruments_0_instrument_external_identifier | String | https://vocab.nerc.ac.uk/collection/L22/current/TOOL0040/ |
attribute | NC_GLOBAL | instruments_0_instrument_name | String | CTD Sea-Bird 25 |
attribute | NC_GLOBAL | instruments_0_instrument_nid | String | 421 |
attribute | NC_GLOBAL | instruments_0_supplied_name | String | Sea-Bird SBE25 CTD |
attribute | NC_GLOBAL | instruments_1_acronym | String | IR Mass Spec |
attribute | NC_GLOBAL | instruments_1_dataset_instrument_description | String | The δ15N values of the N2O produced were measured using a Finnigan MAT-252 isotope ratio mass spectrometer coupled with a modified GasBench II interface |
attribute | NC_GLOBAL | instruments_1_dataset_instrument_nid | String | 767195 |
attribute | NC_GLOBAL | instruments_1_description | String | The Isotope-ratio Mass Spectrometer is a particular type of mass spectrometer used to measure the relative abundance of isotopes in a given sample (e.g. VG Prism II Isotope Ratio Mass-Spectrometer). |
attribute | NC_GLOBAL | instruments_1_instrument_external_identifier | String | https://vocab.nerc.ac.uk/collection/L05/current/LAB16/ |
attribute | NC_GLOBAL | instruments_1_instrument_name | String | Isotope-ratio Mass Spectrometer |
attribute | NC_GLOBAL | instruments_1_instrument_nid | String | 469 |
attribute | NC_GLOBAL | instruments_1_supplied_name | String | Finnigan MAT-252 isotope ratio mass spectrometer |
attribute | NC_GLOBAL | instruments_2_acronym | String | Bran Luebbe AA3 AutoAnalyzer |
attribute | NC_GLOBAL | instruments_2_dataset_instrument_description | String | Dissolved nitrate (NO3 −), nitrite (NO2 −), phosphate (PO4 3−), and silicate (SiO4 4−) were measured using a Bran and Luebbe AA3 autoanalyzer as described previously (Wilkerson et al. 2015). |
attribute | NC_GLOBAL | instruments_2_dataset_instrument_nid | String | 767194 |
attribute | NC_GLOBAL | instruments_2_description | String | Bran Luebbe AA3 AutoAnalyzer See the description from the manufacturer. |
attribute | NC_GLOBAL | instruments_2_instrument_external_identifier | String | https://vocab.nerc.ac.uk/collection/L05/current/LAB04/ |
attribute | NC_GLOBAL | instruments_2_instrument_name | String | Bran Luebbe AA3 AutoAnalyzer |
attribute | NC_GLOBAL | instruments_2_instrument_nid | String | 700 |
attribute | NC_GLOBAL | instruments_2_supplied_name | String | Bran and Luebbe AA3 autoanalyzer |
attribute | NC_GLOBAL | instruments_3_acronym | String | qPCR |
attribute | NC_GLOBAL | instruments_3_dataset_instrument_description | String | All reactions (25 μL total volume) were run in triplicate on a C1000 Touch Thermal Cycler equipped with a CFX96 Real-Time System (Bio- Rad), using either the iTaq Universal Green SYBR Mix (Bio-Rad) or the Platinum qPCR SuperMix-UDG (Thermo Fisher). |
attribute | NC_GLOBAL | instruments_3_dataset_instrument_nid | String | 767196 |
attribute | NC_GLOBAL | instruments_3_description | String | An instrument for quantitative polymerase chain reaction (qPCR), also known as real-time polymerase chain reaction (Real-Time PCR). |
attribute | NC_GLOBAL | instruments_3_instrument_name | String | qPCR Thermal Cycler |
attribute | NC_GLOBAL | instruments_3_instrument_nid | String | 707569 |
attribute | NC_GLOBAL | instruments_3_supplied_name | String | C1000 Touch Thermal Cycler |
attribute | NC_GLOBAL | keywords | String | added, ammonia, Ammonia_Oxidation, Ammonia_Oxidation_sd, ammonium, amo, arg, atten, Atten_Coeff, bacterial, Bacterial_16S_rRNA, bco, bco-dmo, biological, chemical, chemistry, coeff, comment, concentration, cruise, Cruise_ID, dae, dap, data, dataset, date, density, depth, diss, Diss_Oxygen, dmo, earth, Earth Science > Oceans > Ocean Chemistry > Ammonia, Earth Science > Oceans > Ocean Chemistry > Phosphate, Earth Science > Oceans > Ocean Chemistry > Silicate, Earth Science > Oceans > Salinity/Density > Salinity, erddap, fluor, glu, iso, ISO_Date, latitude, latitude2, longitude, longitude2, management, mass, mass_concentration_of_phosphate_in_sea_water, mass_concentration_of_silicate_in_sea_water, mole, mole_concentration_of_ammonium_in_sea_water, mole_concentration_of_nitrite_in_sea_water, n02, n15, N15_added, N15_ox_from_ARG, N15_ox_from_ARG_sd, N15_ox_from_DAE, N15_ox_from_DAE_sd, N15_ox_from_DAP, N15_ox_from_DAP_sd, N15_ox_from_GLU, N15_ox_from_GLU_sd, N15_ox_from_PUT, N15_ox_from_PUT_sd, N15_ox_from_UREA, N15_ox_from_UREA_sd, nh4, nitrate, nitrite, nitrospina, Nitrospina_16S_rRNA, no3, O2, ocean, oceanography, oceans, office, oxidation, oxygen, phosphate, po4, practical, preliminary, put, region, relative, Relative_Fluor, rna, salinity, science, sea, sea_water_practical_salinity, seawater, silicate, sta, temperature, thaumarchaeal, Thaumarchaeal_16S_rRNA, time, urea, water, wca, WCA_amoA, wcb, WCB_amoA |
attribute | NC_GLOBAL | keywords_vocabulary | String | GCMD Science Keywords |
attribute | NC_GLOBAL | license | String | https://www.bco-dmo.org/dataset/767048/license |
attribute | NC_GLOBAL | metadata_source | String | https://www.bco-dmo.org/api/dataset/767048 |
attribute | NC_GLOBAL | Northernmost_Northing | double | 31.99 |
attribute | NC_GLOBAL | param_mapping | String | {'767048': {'lat': 'flag - latitude', 'depth': 'flag - depth', 'lon': 'flag - longitude'}} |
attribute | NC_GLOBAL | parameter_source | String | https://www.bco-dmo.org/mapserver/dataset/767048/parameters |
attribute | NC_GLOBAL | people_0_affiliation | String | University of Georgia |
attribute | NC_GLOBAL | people_0_affiliation_acronym | String | UGA |
attribute | NC_GLOBAL | people_0_person_name | String | Dr James T. Hollibaugh |
attribute | NC_GLOBAL | people_0_person_nid | String | 662307 |
attribute | NC_GLOBAL | people_0_role | String | Principal Investigator |
attribute | NC_GLOBAL | people_0_role_type | String | originator |
attribute | NC_GLOBAL | people_1_affiliation | String | University of Hawaii |
attribute | NC_GLOBAL | people_1_person_name | String | Brian N. Popp |
attribute | NC_GLOBAL | people_1_person_nid | String | 51093 |
attribute | NC_GLOBAL | people_1_role | String | Co-Principal Investigator |
attribute | NC_GLOBAL | people_1_role_type | String | originator |
attribute | NC_GLOBAL | people_2_affiliation | String | Woods Hole Oceanographic Institution |
attribute | NC_GLOBAL | people_2_affiliation_acronym | String | WHOI BCO-DMO |
attribute | NC_GLOBAL | people_2_person_name | String | Mathew Biddle |
attribute | NC_GLOBAL | people_2_person_nid | String | 708682 |
attribute | NC_GLOBAL | people_2_role | String | BCO-DMO Data Manager |
attribute | NC_GLOBAL | people_2_role_type | String | related |
attribute | NC_GLOBAL | project | String | DON Oxidation |
attribute | NC_GLOBAL | projects_0_acronym | String | DON Oxidation |
attribute | NC_GLOBAL | projects_0_description | String | NSF Abstract: Nitrogen is an essential nutrient for phytoplankton that often limits primary production in the ocean, and its availability therefore plays a key role in global ocean productivity. The amounts and form in which nitrogen exist are controlled by microorganisms. One microorganism-mediated process is known as nitrification, which oxidizes ammonia or ammonium to nitrite and nitrite to nitrate, nitrate being the bioavailable form of nitrogen. While this is the well-accepted process of nitrification, preliminary results strongly suggest that a nitrogen-containing compound know as polyamine nitrogen may be directly converted by some microorganisms to nitrate. However, the importance of this process for global biogeochemical nitrogen cycling is unknown. The goal of this study is to evaluate the biogeochemical significance of direct oxidation of polyamine nitrogen, as a model organic nitrogen compound, to nitrification compared to canonical nitrification of ammonia. The project will result in training a postdoctoral researcher and provide opportunities for undergraduates to gain hands-on experience with research on microbial geochemistry and coastal ecosystem processes. Project personnel will also work with the Georgia Coastal Ecosystems Long-Term Ecological Research program to engage a K-12 science teacher in the project. Ammonia oxidation is a key step in the process of converting fixed nitrogen to dinitrogen gas and thus is central to the global nitrogen cycle and to removing excess fixed nitrogen from coastal waters with high concentrations of nutrients. Recent research has shown that Thaumarchaeota play a major role in ammonia oxidation in the ocean. Experiments with enrichment cultures and coastal water samples where ammonia oxidizing archaea are the dominant ammonia oxidizers, show that some forms of organic nitrogen may be oxidized directly to nitrogen oxides without first being regenerated as ammonium. Of the substrates tested, polyamine and particularly putrescine nitrogen appear to be oxidized directly to nitrogen oxides, while amino acid and urea nitrogen is first regenerated as ammonium and then oxidized. The investigators will examine this process in detail over three years using enrichment cultures and experiments conducted with coastal bacterioplankton. Specifically, they will aim to better understand 1) the consequences of this novel process to ocean geochemistry, 2) the fate of the carbon present in polyamines, 3) what organisms are responsible for the direct oxidation, and 4) the chemical characteristics of the organic nitrogen compounds accessible to direct oxidation. |
attribute | NC_GLOBAL | projects_0_end_date | String | 2018-11 |
attribute | NC_GLOBAL | projects_0_geolocation | String | Coastal waters and the South Atlantic Bight continental shelf from Savannah GA out to the shelf break (SAV 17-16, UNOLS STR _104733, Marsden Grid 117, Navy Ops NA06), coastal waters around Sapelo Island, Georgia USA |
attribute | NC_GLOBAL | projects_0_name | String | Collaborative Research: Direct Oxidation of Organic Nitrogen by Marine Ammonia Oxidizing Organisms |
attribute | NC_GLOBAL | projects_0_project_nid | String | 757587 |
attribute | NC_GLOBAL | projects_0_start_date | String | 2015-12 |
attribute | NC_GLOBAL | publisher_name | String | Biological and Chemical Oceanographic Data Management Office (BCO-DMO) |
attribute | NC_GLOBAL | publisher_type | String | institution |
attribute | NC_GLOBAL | sourceUrl | String | (local files) |
attribute | NC_GLOBAL | Southernmost_Northing | double | 30.32 |
attribute | NC_GLOBAL | standard_name_vocabulary | String | CF Standard Name Table v55 |
attribute | NC_GLOBAL | summary | String | This dataset contains the results of analyses related to ammonia oxidation rates, including oxidation rates of 15N supplied as ammonia, urea, 1,2 diamino ethane, 1,3 diamino propane, 1,4 diamino butane (putrescine), arginine and glutamate. Ancillary data including nutrient concentrations and the abundance of ammonia- and nitrite-oxidizing microorganisms are also reported. The samples analyzed to produce the dataset were collected off the coast of Georgia, USA. Most data were collected on one cruise in August 2017, incidental data from 2011, 2013 and 2016 are also reported. |
attribute | NC_GLOBAL | title | String | [DON_Oxidation] - Dissolved Organic Nitrogen oxidation collected on cruise SAV 17-16 in the South Atlantic Bight aboard the R/V Savannah from 2011 to 2017 (Collaborative Research: Direct Oxidation of Organic Nitrogen by Marine Ammonia Oxidizing Organisms) |
attribute | NC_GLOBAL | version | String | 1 |
attribute | NC_GLOBAL | Westernmost_Easting | double | -81.36 |
attribute | NC_GLOBAL | xml_source | String | osprey2erddap.update_xml() v1.3 |
variable | Cruise_ID | String | ||
attribute | Cruise_ID | bcodmo_name | String | cruise_id |
attribute | Cruise_ID | description | String | R2R catalog identifier for this cruise |
attribute | Cruise_ID | long_name | String | Cruise ID |
attribute | Cruise_ID | units | String | unitless |
variable | Sta | String | ||
attribute | Sta | bcodmo_name | String | station |
attribute | Sta | description | String | Station Identifier. Marsh Landing is on the Duplin River a tidal channel adjacent to Sapelo Island GA. |
attribute | Sta | long_name | String | Sta |
attribute | Sta | units | String | unitless |
variable | Region | String | ||
attribute | Region | bcodmo_name | String | unknown |
attribute | Region | description | String | Arbitratry assignment of stations to zones in the study area identified by location and water properties: I = Inshore; M = midshelf; S = Shelf-break; O = Oceanic |
attribute | Region | long_name | String | Region |
attribute | Region | units | String | unitless |
variable | depth | double | ||
attribute | depth | _CoordinateAxisType | String | Height |
attribute | depth | _CoordinateZisPositive | String | down |
attribute | depth | _FillValue | double | NaN |
attribute | depth | actual_range | double | 0.2, 500.0 |
attribute | depth | axis | String | Z |
attribute | depth | bcodmo_name | String | depth |
attribute | depth | colorBarMaximum | double | 8000.0 |
attribute | depth | colorBarMinimum | double | -8000.0 |
attribute | depth | colorBarPalette | String | TopographyDepth |
attribute | depth | description | String | Depth sampled in meters |
attribute | depth | ioos_category | String | Location |
attribute | depth | long_name | String | Depth |
attribute | depth | nerc_identifier | String | https://vocab.nerc.ac.uk/collection/P09/current/DEPH/ |
attribute | depth | positive | String | down |
attribute | depth | standard_name | String | depth |
attribute | depth | units | String | m |
variable | longitude | double | ||
attribute | longitude | _CoordinateAxisType | String | Lon |
attribute | longitude | _FillValue | double | NaN |
attribute | longitude | actual_range | double | -81.36, -78.77 |
attribute | longitude | axis | String | X |
attribute | longitude | bcodmo_name | String | longitude |
attribute | longitude | colorBarMaximum | double | 180.0 |
attribute | longitude | colorBarMinimum | double | -180.0 |
attribute | longitude | description | String | degrees longitude with positive values eastward |
attribute | longitude | ioos_category | String | Location |
attribute | longitude | long_name | String | Longitude |
attribute | longitude | nerc_identifier | String | https://vocab.nerc.ac.uk/collection/P09/current/LONX/ |
attribute | longitude | standard_name | String | longitude |
attribute | longitude | units | String | degrees_east |
variable | latitude | double | ||
attribute | latitude | _CoordinateAxisType | String | Lat |
attribute | latitude | _FillValue | double | NaN |
attribute | latitude | actual_range | double | 30.32, 31.99 |
attribute | latitude | axis | String | Y |
attribute | latitude | bcodmo_name | String | latitude |
attribute | latitude | colorBarMaximum | double | 90.0 |
attribute | latitude | colorBarMinimum | double | -90.0 |
attribute | latitude | description | String | degrees latitude with positive values northward |
attribute | latitude | ioos_category | String | Location |
attribute | latitude | long_name | String | Latitude |
attribute | latitude | nerc_identifier | String | https://vocab.nerc.ac.uk/collection/P09/current/LATX/ |
attribute | latitude | standard_name | String | latitude |
attribute | latitude | units | String | degrees_north |
variable | latitude2 | String | ||
attribute | latitude2 | bcodmo_name | String | latitude |
attribute | latitude2 | description | String | Latitude in degrees and decimal minutes N |
attribute | latitude2 | long_name | String | Latitude |
attribute | latitude2 | nerc_identifier | String | https://vocab.nerc.ac.uk/collection/P09/current/LATX/ |
attribute | latitude2 | standard_name | String | latitude |
attribute | latitude2 | units | String | degrees and decimal minutes N |
variable | longitude2 | String | ||
attribute | longitude2 | bcodmo_name | String | longitude |
attribute | longitude2 | description | String | Longitude in degrees and decimal minutes W |
attribute | longitude2 | long_name | String | Longitude |
attribute | longitude2 | nerc_identifier | String | https://vocab.nerc.ac.uk/collection/P09/current/LONX/ |
attribute | longitude2 | standard_name | String | longitude |
attribute | longitude2 | units | String | degrees and decimal minutes W |
variable | Date | String | ||
attribute | Date | bcodmo_name | String | date |
attribute | Date | description | String | Sampling date: MM/DD/YYYY |
attribute | Date | long_name | String | Date |
attribute | Date | nerc_identifier | String | https://vocab.nerc.ac.uk/collection/P01/current/ADATAA01/ |
attribute | Date | source_name | String | Date |
attribute | Date | time_precision | String | 1970-01-01 |
attribute | Date | units | String | unitless |
variable | ISO_Date | String | ||
attribute | ISO_Date | bcodmo_name | String | date |
attribute | ISO_Date | description | String | Date following the ISO convention of YYYY-MM-DD |
attribute | ISO_Date | long_name | String | ISO Date |
attribute | ISO_Date | nerc_identifier | String | https://vocab.nerc.ac.uk/collection/P01/current/ADATAA01/ |
attribute | ISO_Date | time_precision | String | 1970-01-01 |
attribute | ISO_Date | units | String | unitless |
variable | Bacterial_16S_rRNA | float | ||
attribute | Bacterial_16S_rRNA | _FillValue | float | NaN |
attribute | Bacterial_16S_rRNA | actual_range | float | 3.36E7, 9.4800003E10 |
attribute | Bacterial_16S_rRNA | bcodmo_name | String | unknown |
attribute | Bacterial_16S_rRNA | description | String | Concentration of genes for Bacteria 16S rRNA determined by qPCR (see qPCR parameter table) in units of copies L-1; Blank Cells = no data; either not sampled or the sample was lost; BLD = Below Limit of Detection. See qPCR parameter table. qPCR data are from single biological replicates; means of triplicate qPCR reactions. Limit of detection is given as copies per mL of template DNA; the limit thus varies by sample depending on volume filtered; extract volume and template volume per per reaction. The limits given are from this sample set assuming the minimum detectable concentration in the template used and 1 uL of template per reaction. They are thus conservative as some reactions were run with 10 uL of template. |
attribute | Bacterial_16S_rRNA | long_name | String | Bacterial 16 S R RNA |
attribute | Bacterial_16S_rRNA | units | String | copies per liter filtered |
variable | Thaumarchaeal_16S_rRNA | String | ||
attribute | Thaumarchaeal_16S_rRNA | bcodmo_name | String | unknown |
attribute | Thaumarchaeal_16S_rRNA | description | String | Concentration of genes for Marine Group 1 Archaea (Thaumarchaeota) 16S rRNA determined by qPCR (see qPCR parameter table) in units of copies L-1 Blank Cells = no data either not sampled or the sample was lost; BLD = Below Limit of Detection. See qPCR parameter table. qPCR data are from single biological replicates; means of triplicate qPCR reactions. Limit of detection is given as copies per mL of template DNA; the limit thus varies by sample depending on volume filtered extract volume and template volume per per reaction. The limits given are from this sample set assuming the minimum detectable concentration in the template used and 1 uL of template per reaction. They are thus conservative as some reactions were run with 10 uL of template. |
attribute | Thaumarchaeal_16S_rRNA | long_name | String | Thaumarchaeal 16 S R RNA |
attribute | Thaumarchaeal_16S_rRNA | units | String | copies per liter filtered |
variable | WCA_amoA | String | ||
attribute | WCA_amoA | bcodmo_name | String | unknown |
attribute | WCA_amoA | description | String | Concentration of genes for Archaeal ammonia monooxygenase subunit A from the Water Column A clade; determined by qPCR (see qPCR parameter table) in units of copies L-1; Blank Cells = no data; either not sampled or the sample was lost; BLD = Below Limit of Detection. See qPCR parameter table. qPCR data are from single biological replicates; means of triplicate qPCR reactions. Limit of detection is given as copies per mL of template DNA; the limit thus varies by sample depending on volume filtered; extract volume and template volume per per reaction. The limits given are from this sample set assuming the minimum detectable concentration in the template used and 1 uL of template per reaction. They are thus conservative as some reactions were run with 10 uL of template. |
attribute | WCA_amoA | long_name | String | WCA Amo A |
attribute | WCA_amoA | units | String | copies per liter filtered |
variable | WCB_amoA | String | ||
attribute | WCB_amoA | bcodmo_name | String | unknown |
attribute | WCB_amoA | description | String | Concentration of genes for Archaeal ammonia monooxygenase subunit A from the Water Column A clade; determined by qPCR (see qPCR parameter table) in units of copies L-1; "Blank Cells = no data either not sampled or the sample was lost; BLD = Below Limit of Detection. See qPCR parameter table. qPCR data are from single biological replicates means of triplicate qPCR reactions. Limit of detection is given as copies per mL of template DNA; the limit thus varies by sample depending on volume filtered extract volume and template volume per per reaction. The limits given are from this sample set assuming the minimum detectable concentration in the template used and 1 uL of template per reaction. They are thus conservative as some reactions were run with 10 uL of template. |
attribute | WCB_amoA | long_name | String | WCB Amo A |
attribute | WCB_amoA | units | String | copies per liter filtered |
variable | Nitrospina_16S_rRNA | String | ||
attribute | Nitrospina_16S_rRNA | bcodmo_name | String | unknown |
attribute | Nitrospina_16S_rRNA | description | String | Concentration of genes for Nitrospina 16S rRNA determined by qPCR (see qPCR parameter table) in units of copies L-1; Blank Cells = no data; either not sampled or the sample was lost; BLD = Below Limit of Detection. See qPCR parameter table. qPCR data are from single biological replicates; means of triplicate qPCR reactions. Limit of detection is given as copies per mL of template DNA; the limit thus varies by sample depending on volume filtered; extract volume and template volume per per reaction. The limits given are from this sample set assuming the minimum detectable concentration in the template used and 1 uL of template per reaction. They are thus conservative as some reactions were run with 10 uL of template. |
attribute | Nitrospina_16S_rRNA | long_name | String | Nitrospina 16 S R RNA |
attribute | Nitrospina_16S_rRNA | units | String | copies per liter filtered |
variable | N15_added | byte | ||
attribute | N15_added | _FillValue | byte | 127 |
attribute | N15_added | actual_range | byte | 10, 50 |
attribute | N15_added | bcodmo_name | String | unknown |
attribute | N15_added | description | String | Final concentration of uniformly 15N labeled test substrates |
attribute | N15_added | long_name | String | N15 Added |
attribute | N15_added | units | String | nanomoles per liter |
variable | Ammonia_Oxidation | String | ||
attribute | Ammonia_Oxidation | bcodmo_name | String | unknown |
attribute | Ammonia_Oxidation | description | String | Ammonia oxidation rate determined from conversion of 15N-labeled ammonium to 15N-labeled nitrite plus nitrate; BLD = Below Limit of Detection. 15N data are mean ± S.E.M. of duplicate biological replicates (see Damashek et al. 2018 for details) . Based on a propagation of error calculation; our conservative estimate of the precision of 15N measurements ±4‰ for samples at natural abundance and ±5.2‰ for samples artificially enriched with carrier 15N. Our limit of detection was similar to that reported by Santoro et al. (2013) and Beman et al. (2011). |
attribute | Ammonia_Oxidation | long_name | String | Ammonia Oxidation |
attribute | Ammonia_Oxidation | units | String | nanomoles per liter per day |
variable | Ammonia_Oxidation_sd | float | ||
attribute | Ammonia_Oxidation_sd | _FillValue | float | NaN |
attribute | Ammonia_Oxidation_sd | actual_range | float | 0.12, 48.28 |
attribute | Ammonia_Oxidation_sd | bcodmo_name | String | unknown |
attribute | Ammonia_Oxidation_sd | colorBarMaximum | double | 50.0 |
attribute | Ammonia_Oxidation_sd | colorBarMinimum | double | 0.0 |
attribute | Ammonia_Oxidation_sd | description | String | Deviation of ammonia oxidation rate determined from conversion of 15N-labeled ammonium to 15N-labeled nitrite plus nitrate; BLD = Below Limit of Detection. 15N data are mean ± S.E.M. of duplicate biological replicates (see Damashek et al. 2018 for details) . Based on a propagation of error calculation; our conservative estimate of the precision of 15N measurements ±4‰ for samples at natural abundance and ±5.2‰ for samples artificially enriched with carrier 15N. Our limit of detection was similar to that reported by Santoro et al. (2013) and Beman et al. (2011). |
attribute | Ammonia_Oxidation_sd | long_name | String | Ammonia Oxidation Sd |
attribute | Ammonia_Oxidation_sd | units | String | nanomoles per liter per day |
variable | N15_ox_from_PUT | String | ||
attribute | N15_ox_from_PUT | bcodmo_name | String | unknown |
attribute | N15_ox_from_PUT | description | String | Oxidation rate of 15N from putrescine (1;4 diamino butane) determined from conversion of the 15N label to 15N-labeled nitrite plus nitrate; BLD = Below Limit of Detection. 15N data are mean ± S.E.M. of duplicate biological replicates (see Damashek et al. 2018 for details) . Based on a propagation of error calculation our conservative estimate of the precision of 15N measurements ±4‰ for samples at natural abundance and ±5.2‰ for samples artificially enriched with carrier 15N. Our limit of detection was similar to that reported by Santoro et al. (2013) and Beman et al. (2011). |
attribute | N15_ox_from_PUT | long_name | String | N15 Ox From PUT |
attribute | N15_ox_from_PUT | units | String | nanomoles per liter per day |
variable | N15_ox_from_PUT_sd | float | ||
attribute | N15_ox_from_PUT_sd | _FillValue | float | NaN |
attribute | N15_ox_from_PUT_sd | actual_range | float | 0.01, 8.09 |
attribute | N15_ox_from_PUT_sd | bcodmo_name | String | unknown |
attribute | N15_ox_from_PUT_sd | colorBarMaximum | double | 50.0 |
attribute | N15_ox_from_PUT_sd | colorBarMinimum | double | 0.0 |
attribute | N15_ox_from_PUT_sd | description | String | Deviation of oxidation rate of 15N from putrescine (1;4 diamino butane) determined from conversion of the 15N label to 15N-labeled nitrite plus nitrate; BLD = Below Limit of Detection. 15N data are mean ± S.E.M. of duplicate biological replicates (see Damashek et al. 2018 for details) . Based on a propagation of error calculation our conservative estimate of the precision of 15N measurements ±4‰ for samples at natural abundance and ±5.2‰ for samples artificially enriched with carrier 15N. Our limit of detection was similar to that reported by Santoro et al. (2013) and Beman et al. (2011). |
attribute | N15_ox_from_PUT_sd | long_name | String | N15 Ox From PUT Sd |
attribute | N15_ox_from_PUT_sd | units | String | nanomoles per liter per day |
variable | N15_ox_from_GLU | String | ||
attribute | N15_ox_from_GLU | bcodmo_name | String | unknown |
attribute | N15_ox_from_GLU | description | String | Oxidation rate of 15N from L-glutamate determined from conversion of the 15N label to 15N-labeled nitrite plus nitrate; BLD = Below Limit of Detection. 15N data are mean ± S.E.M. of duplicate biological replicates (see Damashek et al. 2018 for details) . Based on a propagation of error calculation; our conservative estimate of the precision of 15N measurements ±4‰ for samples at natural abundance and ±5.2‰ for samples artificially enriched with carrier 15N. Our limit of detection was similar to that reported by Santoro et al. (2013) and Beman et al. (2011). |
attribute | N15_ox_from_GLU | long_name | String | N15 Ox From GLU |
attribute | N15_ox_from_GLU | units | String | nanomoles per liter per day |
variable | N15_ox_from_GLU_sd | float | ||
attribute | N15_ox_from_GLU_sd | _FillValue | float | NaN |
attribute | N15_ox_from_GLU_sd | actual_range | float | 0.0, 2.63 |
attribute | N15_ox_from_GLU_sd | bcodmo_name | String | unknown |
attribute | N15_ox_from_GLU_sd | colorBarMaximum | double | 50.0 |
attribute | N15_ox_from_GLU_sd | colorBarMinimum | double | 0.0 |
attribute | N15_ox_from_GLU_sd | description | String | deviation of oxidation rate of 15N from L-glutamate determined from conversion of the 15N label to 15N-labeled nitrite plus nitrate; BLD = Below Limit of Detection. 15N data are mean ± S.E.M. of duplicate biological replicates (see Damashek et al. 2018 for details) . Based on a propagation of error calculation; our conservative estimate of the precision of 15N measurements ±4‰ for samples at natural abundance and ±5.2‰ for samples artificially enriched with carrier 15N. Our limit of detection was similar to that reported by Santoro et al. (2013) and Beman et al. (2011). |
attribute | N15_ox_from_GLU_sd | long_name | String | N15 Ox From GLU Sd |
attribute | N15_ox_from_GLU_sd | units | String | nanomoles per liter per day |
variable | N15_ox_from_UREA | float | ||
attribute | N15_ox_from_UREA | _FillValue | float | NaN |
attribute | N15_ox_from_UREA | actual_range | float | 0.02, 62.53 |
attribute | N15_ox_from_UREA | bcodmo_name | String | unknown |
attribute | N15_ox_from_UREA | description | String | Oxidation rate of 15N from urea determined from conversion of the 15N label to 15N-labeled nitrite plus nitrate BLD = Below Limit of Detection. 15N data are mean ± S.E.M. of duplicate biological replicates (see Damashek et al. 2018 for details) . Based on a propagation of error calculation; our conservative estimate of the precision of 15N measurements ±4‰ for samples at natural abundance and ±5.2‰ for samples artificially enriched with carrier 15N. Our limit of detection was similar to that reported by Santoro et al. (2013) and Beman et al. (2011). |
attribute | N15_ox_from_UREA | long_name | String | N15 Ox From UREA |
attribute | N15_ox_from_UREA | units | String | nanomoles per liter per day |
variable | N15_ox_from_UREA_sd | float | ||
attribute | N15_ox_from_UREA_sd | _FillValue | float | NaN |
attribute | N15_ox_from_UREA_sd | actual_range | float | 0.01, 39.41 |
attribute | N15_ox_from_UREA_sd | bcodmo_name | String | unknown |
attribute | N15_ox_from_UREA_sd | colorBarMaximum | double | 50.0 |
attribute | N15_ox_from_UREA_sd | colorBarMinimum | double | 0.0 |
attribute | N15_ox_from_UREA_sd | description | String | Deviation of oxidation rate of 15N from urea determined from conversion of the 15N label to 15N-labeled nitrite plus nitrate BLD = Below Limit of Detection. 15N data are mean ± S.E.M. of duplicate biological replicates (see Damashek et al. 2018 for details) . Based on a propagation of error calculation; our conservative estimate of the precision of 15N measurements ±4‰ for samples at natural abundance and ±5.2‰ for samples artificially enriched with carrier 15N. Our limit of detection was similar to that reported by Santoro et al. (2013) and Beman et al. (2011). |
attribute | N15_ox_from_UREA_sd | long_name | String | N15 Ox From UREA Sd |
attribute | N15_ox_from_UREA_sd | units | String | nanomoles per liter per day |
variable | N15_ox_from_DAE | float | ||
attribute | N15_ox_from_DAE | _FillValue | float | NaN |
attribute | N15_ox_from_DAE | actual_range | float | -0.02, 8.68 |
attribute | N15_ox_from_DAE | bcodmo_name | String | unknown |
attribute | N15_ox_from_DAE | description | String | Oxidation rate of 15N from 1;2 diamino ethane determined from conversion of the 15N label to 15N-labeled nitrite plus nitrate; BLD = Below Limit of Detection. 15N data are mean ± S.E.M. of duplicate biological replicates (see Damashek et al. 2018 for details) . Based on a propagation of error calculation; our conservative estimate of the precision of 15N measurements ±4‰ for samples at natural abundance and ±5.2‰ for samples artificially enriched with carrier 15N. Our limit of detection was similar to that reported by Santoro et al. (2013) and Beman et al. (2011). |
attribute | N15_ox_from_DAE | long_name | String | N15 Ox From DAE |
attribute | N15_ox_from_DAE | units | String | nanomoles per liter per day |
variable | N15_ox_from_DAE_sd | float | ||
attribute | N15_ox_from_DAE_sd | _FillValue | float | NaN |
attribute | N15_ox_from_DAE_sd | actual_range | float | 0.02, 2.43 |
attribute | N15_ox_from_DAE_sd | bcodmo_name | String | unknown |
attribute | N15_ox_from_DAE_sd | colorBarMaximum | double | 50.0 |
attribute | N15_ox_from_DAE_sd | colorBarMinimum | double | 0.0 |
attribute | N15_ox_from_DAE_sd | description | String | Deviation of oxidation rate of 15N from 1;2 diamino ethane determined from conversion of the 15N label to 15N-labeled nitrite plus nitrate; BLD = Below Limit of Detection. 15N data are mean ± S.E.M. of duplicate biological replicates (see Damashek et al. 2018 for details) . Based on a propagation of error calculation; our conservative estimate of the precision of 15N measurements ±4‰ for samples at natural abundance and ±5.2‰ for samples artificially enriched with carrier 15N. Our limit of detection was similar to that reported by Santoro et al. (2013) and Beman et al. (2011). |
attribute | N15_ox_from_DAE_sd | long_name | String | N15 Ox From DAE Sd |
attribute | N15_ox_from_DAE_sd | units | String | nanomoles per liter per day |
variable | N15_ox_from_DAP | float | ||
attribute | N15_ox_from_DAP | _FillValue | float | NaN |
attribute | N15_ox_from_DAP | actual_range | float | -0.01, 53.63 |
attribute | N15_ox_from_DAP | bcodmo_name | String | unknown |
attribute | N15_ox_from_DAP | description | String | Oxidation rate of 15N from 1;3 diamino propane determined from conversion of the 15N label to 15N-labeled nitrite plus nitrate; BLD = Below Limit of Detection. 15N data are mean ± S.E.M. of duplicate biological replicates (see Damashek et al. 2018 for details) . Based on a propagation of error calculation; our conservative estimate of the precision of 15N measurements ±4‰ for samples at natural abundance and ±5.2‰ for samples artificially enriched with carrier 15N. Our limit of detection was similar to that reported by Santoro et al. (2013) and Beman et al. (2011). |
attribute | N15_ox_from_DAP | long_name | String | N15 Ox From DAP |
attribute | N15_ox_from_DAP | units | String | nanomoles per liter per day |
variable | N15_ox_from_DAP_sd | float | ||
attribute | N15_ox_from_DAP_sd | _FillValue | float | NaN |
attribute | N15_ox_from_DAP_sd | actual_range | float | 0.02, 2.99 |
attribute | N15_ox_from_DAP_sd | bcodmo_name | String | unknown |
attribute | N15_ox_from_DAP_sd | colorBarMaximum | double | 50.0 |
attribute | N15_ox_from_DAP_sd | colorBarMinimum | double | 0.0 |
attribute | N15_ox_from_DAP_sd | description | String | Deviation of oxidation rate of 15N from 1;3 diamino propane determined from conversion of the 15N label to 15N-labeled nitrite plus nitrate; BLD = Below Limit of Detection. 15N data are mean ± S.E.M. of duplicate biological replicates (see Damashek et al. 2018 for details) . Based on a propagation of error calculation; our conservative estimate of the precision of 15N measurements ±4‰ for samples at natural abundance and ±5.2‰ for samples artificially enriched with carrier 15N. Our limit of detection was similar to that reported by Santoro et al. (2013) and Beman et al. (2011). |
attribute | N15_ox_from_DAP_sd | long_name | String | N15 Ox From DAP Sd |
attribute | N15_ox_from_DAP_sd | units | String | nanomoles per liter per day |
variable | N15_ox_from_ARG | float | ||
attribute | N15_ox_from_ARG | _FillValue | float | NaN |
attribute | N15_ox_from_ARG | actual_range | float | 0.07, 75.04 |
attribute | N15_ox_from_ARG | bcodmo_name | String | unknown |
attribute | N15_ox_from_ARG | description | String | Oxidation rate of 15N from L-arginine determined from conversion of the 15N label to 15N-labeled nitrite plus nitrate; BLD = Below Limit of Detection. 15N data are mean ± S.E.M. of duplicate biological replicates (see Damashek et al. 2018 for details) . Based on a propagation of error calculation our conservative estimate of the precision of 15N measurements ±4‰ for samples at natural abundance and ±5.2‰ for samples artificially enriched with carrier 15N. Our limit of detection was similar to that reported by Santoro et al. (2013) and Beman et al. (2011). |
attribute | N15_ox_from_ARG | long_name | String | N15 Ox From ARG |
attribute | N15_ox_from_ARG | units | String | nanomoles per liter per day |
variable | N15_ox_from_ARG_sd | float | ||
attribute | N15_ox_from_ARG_sd | _FillValue | float | NaN |
attribute | N15_ox_from_ARG_sd | actual_range | float | 0.11, 13.58 |
attribute | N15_ox_from_ARG_sd | bcodmo_name | String | unknown |
attribute | N15_ox_from_ARG_sd | colorBarMaximum | double | 50.0 |
attribute | N15_ox_from_ARG_sd | colorBarMinimum | double | 0.0 |
attribute | N15_ox_from_ARG_sd | description | String | Deviation of oxidation rate of 15N from L-arginine determined from conversion of the 15N label to 15N-labeled nitrite plus nitrate; BLD = Below Limit of Detection. 15N data are mean ± S.E.M. of duplicate biological replicates (see Damashek et al. 2018 for details) . Based on a propagation of error calculation our conservative estimate of the precision of 15N measurements ±4‰ for samples at natural abundance and ±5.2‰ for samples artificially enriched with carrier 15N. Our limit of detection was similar to that reported by Santoro et al. (2013) and Beman et al. (2011). |
attribute | N15_ox_from_ARG_sd | long_name | String | N15 Ox From ARG Sd |
attribute | N15_ox_from_ARG_sd | units | String | nanomoles per liter per day |
variable | Nitrate | String | ||
attribute | Nitrate | bcodmo_name | String | NO3 |
attribute | Nitrate | description | String | Concentration of nitrate determined by cadmium reduction to nitrite followed by subtraction nitrite already present in the sample; Samples run on an autoanalyzer by Francis Wilkerson's lab at San Francisco State University |
attribute | Nitrate | long_name | String | Nitrate |
attribute | Nitrate | nerc_identifier | String | https://vocab.nerc.ac.uk/collection/P01/current/NTRAIGGS/ |
attribute | Nitrate | units | String | micromoles per liter |
variable | Nitrite | float | ||
attribute | Nitrite | _FillValue | float | NaN |
attribute | Nitrite | actual_range | float | 0.02, 5.12 |
attribute | Nitrite | bcodmo_name | String | NO2 |
attribute | Nitrite | colorBarMaximum | double | 1.0 |
attribute | Nitrite | colorBarMinimum | double | 0.0 |
attribute | Nitrite | description | String | Concentration of nitrite determined by autoanalyzer; Samples run on an autoanalyzer by Francis Wilkerson's lab at San Francisco State University |
attribute | Nitrite | long_name | String | Mole Concentration Of Nitrite In Sea Water |
attribute | Nitrite | nerc_identifier | String | https://vocab.nerc.ac.uk/collection/P01/current/NTRIAAZX/ |
attribute | Nitrite | units | String | micromoles per liter |
variable | Ammonium | float | ||
attribute | Ammonium | _FillValue | float | NaN |
attribute | Ammonium | actual_range | float | 0.03, 1.35 |
attribute | Ammonium | bcodmo_name | String | Ammonium |
attribute | Ammonium | colorBarMaximum | double | 5.0 |
attribute | Ammonium | colorBarMinimum | double | 0.0 |
attribute | Ammonium | description | String | Concentration of ammonium determined by autoanalyzer; Samples run on an autoanalyzer by Francis Wilkerson's lab at San Francisco State University |
attribute | Ammonium | long_name | String | Mole Concentration Of Ammonium In Sea Water |
attribute | Ammonium | nerc_identifier | String | https://vocab.nerc.ac.uk/collection/P01/current/AMONAAZX/ |
attribute | Ammonium | units | String | micromoles per liter |
variable | Urea | float | ||
attribute | Urea | _FillValue | float | NaN |
attribute | Urea | actual_range | float | 0.0, 1.18 |
attribute | Urea | bcodmo_name | String | Urea |
attribute | Urea | description | String | Concentration of urea determined by the carboxythiazole method; Samples run in Hollibaugh lab at UGA |
attribute | Urea | long_name | String | Urea |
attribute | Urea | nerc_identifier | String | https://vocab.nerc.ac.uk/collection/P01/current/UREAAAZX/ |
attribute | Urea | units | String | micromoles per liter |
variable | Silicate | float | ||
attribute | Silicate | _FillValue | float | NaN |
attribute | Silicate | actual_range | float | 0.7, 77.73 |
attribute | Silicate | bcodmo_name | String | SiOH_4 |
attribute | Silicate | description | String | Concentration of silicate determined by autoanalyzer; Samples run on an autoanalyzer by Francis Wilkerson's lab at San Francisco State University |
attribute | Silicate | long_name | String | Mass Concentration Of Silicate In Sea Water |
attribute | Silicate | units | String | micromoles per liter |
variable | Phosphate | float | ||
attribute | Phosphate | _FillValue | float | NaN |
attribute | Phosphate | actual_range | float | 0.024, 1.853 |
attribute | Phosphate | bcodmo_name | String | unknown |
attribute | Phosphate | description | String | Concentration of phosphate determined by autoanalyzer; Samples run on an autoanalyzer by Francis Wilkerson's lab at San Francisco State University |
attribute | Phosphate | long_name | String | Mass Concentration Of Phosphate In Sea Water |
attribute | Phosphate | units | String | micromoles per liter |
variable | Temperature | float | ||
attribute | Temperature | _FillValue | float | NaN |
attribute | Temperature | actual_range | float | 7.82, 31.3 |
attribute | Temperature | bcodmo_name | String | temperature |
attribute | Temperature | description | String | Water temperature in centigrade degrees at the depth sampled measured by the environmental sensing package on the samplling rosette |
attribute | Temperature | long_name | String | Temperature |
attribute | Temperature | nerc_identifier | String | https://vocab.nerc.ac.uk/collection/P01/current/TEMPP901/ |
attribute | Temperature | units | String | degrees centigrade |
variable | Salinity | float | ||
attribute | Salinity | _FillValue | float | NaN |
attribute | Salinity | actual_range | float | 22.1, 36.86 |
attribute | Salinity | bcodmo_name | String | sal |
attribute | Salinity | colorBarMaximum | double | 37.0 |
attribute | Salinity | colorBarMinimum | double | 32.0 |
attribute | Salinity | description | String | Salinity at the depth sampled derived from temperature and conductivity measured by the environmental sensing package on the samplling rosette |
attribute | Salinity | long_name | String | Sea Water Practical Salinity |
attribute | Salinity | nerc_identifier | String | https://vocab.nerc.ac.uk/collection/P01/current/PSALST01/ |
attribute | Salinity | units | String | PSU |
variable | Diss_Oxygen | float | ||
attribute | Diss_Oxygen | _FillValue | float | NaN |
attribute | Diss_Oxygen | actual_range | float | 3.63, 6.38 |
attribute | Diss_Oxygen | bcodmo_name | String | dissolved Oxygen |
attribute | Diss_Oxygen | description | String | Dissolved oxygen concentration at the depth sampled measured by the environmental sensing package on the samplling rosette |
attribute | Diss_Oxygen | long_name | String | Diss Oxygen |
attribute | Diss_Oxygen | units | String | milliliters per liter |
variable | Relative_Fluor | float | ||
attribute | Relative_Fluor | _FillValue | float | NaN |
attribute | Relative_Fluor | actual_range | float | 0.46, 16.44 |
attribute | Relative_Fluor | bcodmo_name | String | fluorescence |
attribute | Relative_Fluor | description | String | Relative Fluorescence measured by the fluorometer on the Niskin rosette sampler converted to mg Chl a L-1 using a regression equation based on extracted chlorophyll data: Chl a = 1.7869RF - 2.2541; R² = 0.83 |
attribute | Relative_Fluor | long_name | String | Relative Fluor |
attribute | Relative_Fluor | nerc_identifier | String | https://vocab.nerc.ac.uk/collection/P01/current/CPHLPM01/ |
attribute | Relative_Fluor | units | String | relative fluorescence |
variable | Atten_Coeff | float | ||
attribute | Atten_Coeff | _FillValue | float | NaN |
attribute | Atten_Coeff | actual_range | float | 0.01, 1.47 |
attribute | Atten_Coeff | bcodmo_name | String | beam_cp |
attribute | Atten_Coeff | description | String | PAR attenuation coefficient kz in m-1 calculated as the slope of log(PAR) vs depth |
attribute | Atten_Coeff | long_name | String | Atten Coeff |
attribute | Atten_Coeff | nerc_identifier | String | https://vocab.nerc.ac.uk/collection/P01/current/ATTNZZ01/ |
attribute | Atten_Coeff | units | String | per meter |
variable | comment | String | ||
attribute | comment | bcodmo_name | String | comment |
attribute | comment | description | String | identifier for the comment. comment value a signifies Environmental data, bacterial 16S, thaumarchaeal 16S, AOB amoA, ammonia oxidation, and urea oxidation data were reported previously in Liu et al. (2015) or Tolar et al. (2017); |
attribute | comment | long_name | String | Comment |
attribute | comment | units | String | unitless |
The information in the table above is also available in other file formats (.csv, .htmlTable, .itx, .json, .jsonlCSV1, .jsonlCSV, .jsonlKVP, .mat, .nc, .nccsv, .tsv, .xhtml) via a RESTful web service.