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Grid DAP Data | Sub- set | Table DAP Data | Make A Graph | W M S | Source Data Files | Acces- sible | Title | Sum- mary | FGDC, ISO, Metadata | Back- ground Info | RSS | E | Institution | Dataset ID |
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data | graph | files | public | [16S rRNA gene from DNA] - 16S rRNA gene (from DNA) from samples collected on cruise Chikyu- 331 in the Okinawa Trough, Japan from September to October 2010 (An In-Depth analysis of the subvent biosphere within Okinawa Backarc Basin (IODP 331, Iheya North Hydrothermal Field) sediments) | F I M | background | BCO-DMO | bcodmo_dataset_780926 |
Row Type | Variable Name | Attribute Name | Data Type | Value |
---|---|---|---|---|
attribute | NC_GLOBAL | access_formats | String | .htmlTable,.csv,.json,.mat,.nc,.tsv,.esriCsv,.geoJson |
attribute | NC_GLOBAL | acquisition_description | String | Sampling of cores was done in accordance with IODP protocols. All C0014 samples were cored on 16 September 2010 via via HPCS (hydraulic piston coring system). All C0015 samples were cored on 18 September 2010 via HPCS. All C0017 samples were cored on 27 September 2010 via HPCS. Core sections were kept frozen (-80\u00b0C) until DNA extractions. A MoBio\u00ae Power Soil kit was used to extract environmental DNA. See publication below for sequencing and analysis methodologies. |
attribute | NC_GLOBAL | awards_0_award_nid | String | 554980 |
attribute | NC_GLOBAL | awards_0_award_number | String | OCE-0939564 |
attribute | NC_GLOBAL | awards_0_data_url | String | http://www.nsf.gov/awardsearch/showAward?AWD_ID=0939564 |
attribute | NC_GLOBAL | awards_0_funder_name | String | NSF Division of Ocean Sciences |
attribute | NC_GLOBAL | awards_0_funding_acronym | String | NSF OCE |
attribute | NC_GLOBAL | awards_0_funding_source_nid | String | 355 |
attribute | NC_GLOBAL | awards_0_program_manager | String | David L. Garrison |
attribute | NC_GLOBAL | awards_0_program_manager_nid | String | 50534 |
attribute | NC_GLOBAL | cdm_data_type | String | Other |
attribute | NC_GLOBAL | comment | String | 16S rRNA gene (from DNA) PI: Christopher House (PSU) Version date: 05 November 2019 |
attribute | NC_GLOBAL | Conventions | String | COARDS, CF-1.6, ACDD-1.3 |
attribute | NC_GLOBAL | creator_email | String | info at bco-dmo.org |
attribute | NC_GLOBAL | creator_name | String | BCO-DMO |
attribute | NC_GLOBAL | creator_type | String | institution |
attribute | NC_GLOBAL | creator_url | String | https://www.bco-dmo.org/ |
attribute | NC_GLOBAL | data_source | String | extract_data_as_tsv version 2.3 19 Dec 2019 |
attribute | NC_GLOBAL | date_created | String | 2019-11-05T21:19:38Z |
attribute | NC_GLOBAL | date_modified | String | 2019-11-22T18:37:16Z |
attribute | NC_GLOBAL | defaultDataQuery | String | &time<now |
attribute | NC_GLOBAL | doi | String | 10.1575/1912/bco-dmo.780926.1 |
attribute | NC_GLOBAL | Easternmost_Easting | double | 126.900833 |
attribute | NC_GLOBAL | geospatial_lat_max | double | 27.794444 |
attribute | NC_GLOBAL | geospatial_lat_min | double | 27.790278 |
attribute | NC_GLOBAL | geospatial_lat_units | String | degrees_north |
attribute | NC_GLOBAL | geospatial_lon_max | double | 126.900833 |
attribute | NC_GLOBAL | geospatial_lon_min | double | 126.891667 |
attribute | NC_GLOBAL | geospatial_lon_units | String | degrees_east |
attribute | NC_GLOBAL | infoUrl | String | https://www.bco-dmo.org/dataset/780926 |
attribute | NC_GLOBAL | institution | String | BCO-DMO |
attribute | NC_GLOBAL | instruments_0_acronym | String | Piston Corer |
attribute | NC_GLOBAL | instruments_0_dataset_instrument_nid | String | 782753 |
attribute | NC_GLOBAL | instruments_0_description | String | The piston corer is a type of bottom sediment sampling device. A long, heavy tube is plunged into the seafloor to extract samples of mud sediment. A piston corer uses a "free fall" of the coring rig to achieve a greater initial force on impact than gravity coring. A sliding piston inside the core barrel reduces inside wall friction with the sediment and helps to evacuate displaced water from the top of the corer. A piston corer is capable of extracting core samples up to 90 feet in length. |
attribute | NC_GLOBAL | instruments_0_instrument_external_identifier | String | https://vocab.nerc.ac.uk/collection/L05/current/51/ |
attribute | NC_GLOBAL | instruments_0_instrument_name | String | Piston Corer |
attribute | NC_GLOBAL | instruments_0_instrument_nid | String | 519 |
attribute | NC_GLOBAL | instruments_0_supplied_name | String | hydraulic piston coring system (HPCS) |
attribute | NC_GLOBAL | keywords | String | accession, bco, bco-dmo, biological, bottom, Bottom_Depth, chemical, cruise, Cruise_ID, data, dataset, depth, dmo, erddap, estimated, Estimated_Temp, iodp, IODP_Sample_Number, latitude, longitude, management, mgrast, MGRAST_Accession_ID, notes, number, oceanography, office, preliminary, sample, sediment, Sediment_type, temperature, top, Top_Depth, type, water, Water_depth |
attribute | NC_GLOBAL | license | String | https://www.bco-dmo.org/dataset/780926/license |
attribute | NC_GLOBAL | metadata_source | String | https://www.bco-dmo.org/api/dataset/780926 |
attribute | NC_GLOBAL | Northernmost_Northing | double | 27.794444 |
attribute | NC_GLOBAL | param_mapping | String | {'780926': {'Latitude': 'master - latitude', 'Longitude': 'master - longitude'}} |
attribute | NC_GLOBAL | parameter_source | String | https://www.bco-dmo.org/mapserver/dataset/780926/parameters |
attribute | NC_GLOBAL | people_0_affiliation | String | Pennsylvania State University |
attribute | NC_GLOBAL | people_0_affiliation_acronym | String | PSU |
attribute | NC_GLOBAL | people_0_person_name | String | Christopher House |
attribute | NC_GLOBAL | people_0_person_nid | String | 714235 |
attribute | NC_GLOBAL | people_0_role | String | Principal Investigator |
attribute | NC_GLOBAL | people_0_role_type | String | originator |
attribute | NC_GLOBAL | people_1_affiliation | String | Pennsylvania State University |
attribute | NC_GLOBAL | people_1_affiliation_acronym | String | PSU |
attribute | NC_GLOBAL | people_1_person_name | String | Leah Brandt |
attribute | NC_GLOBAL | people_1_person_nid | String | 782699 |
attribute | NC_GLOBAL | people_1_role | String | Scientist |
attribute | NC_GLOBAL | people_1_role_type | String | originator |
attribute | NC_GLOBAL | people_2_affiliation | String | Woods Hole Oceanographic Institution |
attribute | NC_GLOBAL | people_2_affiliation_acronym | String | WHOI BCO-DMO |
attribute | NC_GLOBAL | people_2_person_name | String | Shannon Rauch |
attribute | NC_GLOBAL | people_2_person_nid | String | 51498 |
attribute | NC_GLOBAL | people_2_role | String | BCO-DMO Data Manager |
attribute | NC_GLOBAL | people_2_role_type | String | related |
attribute | NC_GLOBAL | project | String | Subvent_Biosphere_Sediments |
attribute | NC_GLOBAL | projects_0_acronym | String | Subvent_Biosphere_Sediments |
attribute | NC_GLOBAL | projects_0_description | String | The Iheya North Hydrothermal Field in the Okinawa Backarc Basin represents an ideal environment in which to investigate the biotic temperature fringe of microbial life at depth because of its subsurface hydrothermal activity within its continental margin-type sediment profile. Geographically, the Okinawa Backarc Basin is situated along a continental margin, which is a sediment profile type commonly sampled and studied across the seafloor (e.g. Peru Margin, Costa Rica Margin, Cascadia Margin). The hydrothermal network within the subsurface here supplies an additional temperature obstacle to microbial life existing in the sediments. In particular, the sediment profile at Site C0014 exhibits a transition from hemipelagic ooze with pumiceous volcaniclastic sediments and low temperature (4°C) to a hydrothermally altered sequence of clays within the top ~10 mbsf of sediment. Temperature measurements indicate a gradient of approximately 3°C/m, which is roughly an order of magnitude greater than continental margin sites (e.g. Cascadia Margin, IODP 311 and Costa Rica Margin, IODP 344), but is more gradual than intense, centimeter-scale gradients from other hot, surface sediments. We have focused on the application of culture-independent, molecular methods to understand taxonomic and functional characteristics through this hydrothermal gradient. Confidence in DNA recovery suggests a microbial biosphere extent of approximately 15 mbsf (55°C). Results from both 16S rRNA gene surveys and metagenomics analyses suggest a temperature-dependent stratigraphy of taxonomic and functional adaptations between the shallowest and deepest sample horizons. Cosmopolitan marine subsurface bacterial and archaeal taxa are present throughout the top 10 mbsf, whereas, hyperthermophilic heterotrophic as well as thermophilic anaerobic methanotrophic archaea appear in varying local abundances in deeper, hydrothermal clay horizons. "An In-Depth analysis of the subvent biosphere within Okinawa Backarc Basin (IODP 331, Iheya North Hydrothermal Field) sediments" encompasses datasets funded through C-DEBI to investigate the microbial communities in IODP 331 Iheya North Hydrothermal Field sediments. Site C0014 at this field site is 500 m away from the active vent and experiences a 3C/m temperature gradient with depth. In the research grant "Investigating the active microbial populations in near hydrothermal vent sediments" and the Research Exchange grant "Learning new RNA extraction techniques", we used an RNA-based approach to explore the active microbial community. Upon analysis, the RNA dataset does not appear to reflect the same information as the phylogenetic signals coming from both the 16S rRNA gene as well as the metagenomes. The data indicate significant background noise from the RNA extraction process rather than from an indigenous representation of the subsurface biosphere. The graduate fellowship "An in-depth analysis of the subvent biosphere within the Okinawa backarc basin Iheya North hydrothermal field" provided an opportunity to bring together metagenomic, 16S rRNA gene amplicon (DNA), and 16S rRNA amplicon datasets from IODP 331 Iheya North Hydrothermal Field sediments to understand the biogeography of this subvent biosphere. For more information, refer to the following C-DEBI grants/projects. An in-depth analysis of the subvent biosphere within the Okinawa backarc basin Iheya North hydrothermal field:https://www.darkenergybiosphere.org/award/an-in-depth-analysis-of-the-subvent-biosphere-within-the-okinawa-backarc-basin-iheya-north-hydrothermal-field/ Investigating the active microbial populations in near hydrothermal vent sediments: https://www.darkenergybiosphere.org/award/investigating-the-active-microbial-populations-in-near-hydrothermal-vent-sediments/ Learn new RNA extraction techniques: https://www.darkenergybiosphere.org/award/learn-new-rna-extraction-techniques/ |
attribute | NC_GLOBAL | projects_0_end_date | String | 2016-05 |
attribute | NC_GLOBAL | projects_0_geolocation | String | Iheya North Hydrothermal Field, Pacific Ocean |
attribute | NC_GLOBAL | projects_0_name | String | An In-Depth analysis of the subvent biosphere within Okinawa Backarc Basin (IODP 331, Iheya North Hydrothermal Field) sediments |
attribute | NC_GLOBAL | projects_0_project_nid | String | 714230 |
attribute | NC_GLOBAL | projects_0_start_date | String | 2014-06 |
attribute | NC_GLOBAL | publisher_name | String | Biological and Chemical Oceanographic Data Management Office (BCO-DMO) |
attribute | NC_GLOBAL | publisher_type | String | institution |
attribute | NC_GLOBAL | sourceUrl | String | (local files) |
attribute | NC_GLOBAL | Southernmost_Northing | double | 27.790278 |
attribute | NC_GLOBAL | standard_name_vocabulary | String | CF Standard Name Table v55 |
attribute | NC_GLOBAL | summary | String | The purpose of this dataset was to investigate taxonomic changes via the 16S rRNA gene from extractable DNA across 45 meters of recovered core. The temperature gradient in this section of the dynamic Iheya North Hydrothermal system was estimated to be ~3C/m. The interval transitions sharply from low-temperature marine mud to hydrothermally altered clay. |
attribute | NC_GLOBAL | title | String | [16S rRNA gene from DNA] - 16S rRNA gene (from DNA) from samples collected on cruise Chikyu-331 in the Okinawa Trough, Japan from September to October 2010 (An In-Depth analysis of the subvent biosphere within Okinawa Backarc Basin (IODP 331, Iheya North Hydrothermal Field) sediments) |
attribute | NC_GLOBAL | version | String | 1 |
attribute | NC_GLOBAL | Westernmost_Easting | double | 126.891667 |
attribute | NC_GLOBAL | xml_source | String | osprey2erddap.update_xml() v1.3 |
variable | Cruise_ID | String | ||
attribute | Cruise_ID | bcodmo_name | String | cruise_id |
attribute | Cruise_ID | description | String | Cruise ID number |
attribute | Cruise_ID | long_name | String | Cruise ID |
attribute | Cruise_ID | units | String | unitless |
variable | IODP_Sample_Number | String | ||
attribute | IODP_Sample_Number | bcodmo_name | String | sample |
attribute | IODP_Sample_Number | description | String | IODP sample number |
attribute | IODP_Sample_Number | long_name | String | IODP Sample Number |
attribute | IODP_Sample_Number | nerc_identifier | String | https://vocab.nerc.ac.uk/collection/P02/current/ACYC/ |
attribute | IODP_Sample_Number | units | String | unitless |
variable | latitude | double | ||
attribute | latitude | _CoordinateAxisType | String | Lat |
attribute | latitude | _FillValue | double | NaN |
attribute | latitude | actual_range | double | 27.790278, 27.794444 |
attribute | latitude | axis | String | Y |
attribute | latitude | bcodmo_name | String | latitude |
attribute | latitude | colorBarMaximum | double | 90.0 |
attribute | latitude | colorBarMinimum | double | -90.0 |
attribute | latitude | description | String | Latitude; positive values = North |
attribute | latitude | ioos_category | String | Location |
attribute | latitude | long_name | String | Latitude |
attribute | latitude | nerc_identifier | String | https://vocab.nerc.ac.uk/collection/P09/current/LATX/ |
attribute | latitude | standard_name | String | latitude |
attribute | latitude | units | String | degrees_north |
variable | longitude | double | ||
attribute | longitude | _CoordinateAxisType | String | Lon |
attribute | longitude | _FillValue | double | NaN |
attribute | longitude | actual_range | double | 126.891667, 126.900833 |
attribute | longitude | axis | String | X |
attribute | longitude | bcodmo_name | String | longitude |
attribute | longitude | colorBarMaximum | double | 180.0 |
attribute | longitude | colorBarMinimum | double | -180.0 |
attribute | longitude | description | String | Longitude; positive values = East |
attribute | longitude | ioos_category | String | Location |
attribute | longitude | long_name | String | Longitude |
attribute | longitude | nerc_identifier | String | https://vocab.nerc.ac.uk/collection/P09/current/LONX/ |
attribute | longitude | standard_name | String | longitude |
attribute | longitude | units | String | degrees_east |
variable | Water_depth | float | ||
attribute | Water_depth | _FillValue | float | NaN |
attribute | Water_depth | actual_range | float | 886.0, 1060.0 |
attribute | Water_depth | bcodmo_name | String | depth_w |
attribute | Water_depth | description | String | Water depth |
attribute | Water_depth | long_name | String | Water Depth |
attribute | Water_depth | units | String | meters |
variable | Top_Depth | float | ||
attribute | Top_Depth | _FillValue | float | NaN |
attribute | Top_Depth | actual_range | float | 0.23, 44.51 |
attribute | Top_Depth | bcodmo_name | String | depth_bsf |
attribute | Top_Depth | description | String | Top depth |
attribute | Top_Depth | long_name | String | Top Depth |
attribute | Top_Depth | units | String | meters below seafloor |
variable | Bottom_Depth | float | ||
attribute | Bottom_Depth | _FillValue | float | NaN |
attribute | Bottom_Depth | actual_range | float | 0.38, 44.66 |
attribute | Bottom_Depth | bcodmo_name | String | depth_bsf |
attribute | Bottom_Depth | description | String | Bottom depth |
attribute | Bottom_Depth | long_name | String | Bottom Depth |
attribute | Bottom_Depth | units | String | meters below seafloor |
variable | Sediment_type | String | ||
attribute | Sediment_type | bcodmo_name | String | sample_descrip |
attribute | Sediment_type | description | String | Sediment type |
attribute | Sediment_type | long_name | String | Sediment Type |
attribute | Sediment_type | units | String | unitless |
variable | Estimated_Temp | float | ||
attribute | Estimated_Temp | _FillValue | float | NaN |
attribute | Estimated_Temp | actual_range | float | 5.26, 151.38 |
attribute | Estimated_Temp | bcodmo_name | String | temperature |
attribute | Estimated_Temp | description | String | Estimated temperature; based on 3 degrees C/m |
attribute | Estimated_Temp | long_name | String | Estimated Temp |
attribute | Estimated_Temp | nerc_identifier | String | https://vocab.nerc.ac.uk/collection/P01/current/TEMPP901/ |
attribute | Estimated_Temp | units | String | degrees Celsius |
variable | MGRAST_Accession_ID | String | ||
attribute | MGRAST_Accession_ID | bcodmo_name | String | accession number |
attribute | MGRAST_Accession_ID | description | String | MG-RAST accession ID number |
attribute | MGRAST_Accession_ID | long_name | String | MGRAST Accession ID |
attribute | MGRAST_Accession_ID | units | String | unitless |
variable | Notes | String | ||
attribute | Notes | bcodmo_name | String | comment |
attribute | Notes | description | String | Notes |
attribute | Notes | long_name | String | Notes |
attribute | Notes | units | String | unitless |
The information in the table above is also available in other file formats (.csv, .htmlTable, .itx, .json, .jsonlCSV1, .jsonlCSV, .jsonlKVP, .mat, .nc, .nccsv, .tsv, .xhtml) via a RESTful web service.