ERDDAP > info > bcodmo_dataset_783873

Grid DAP Data	Sub- set	Table DAP Data	Make A Graph	W M S	Source Data Files	Acces- sible	Title	Sum- mary	FGDC, ISO, Metadata	Back- ground Info	RSS	E mail	Institution	Dataset ID
		data	graph		files	public	[Diel proteomes Trichodesmium IMS101] - Diel proteomes of cultured Trichodesmium erythraeum sp. IMS101 from laboratory experiments conducted in November of 2018 (New technology for high resolution analysis of proteins and other organic materials produced by marine microorganisms)		I   M	background			BCO-DMO	bcodmo_dataset_783873

The Dataset's Variables and Attributes

Row Type	Variable Name	Attribute Name	Data Type	Value
attribute	NC_GLOBAL	access_formats	String	.htmlTable,.csv,.json,.mat,.nc,.tsv
attribute	NC_GLOBAL	acquisition_description	String	A batch culture (1.5L) of Trichodesmium erythraeum sp. IMS101 was grown in a 27\u00b0C incubator with a 14:10 light cycle that ramps up and down mimicking dawn and dusk. Sampling occurred every 1-3 hours with concentrated sampling at dawn and dusk. 70mL of the culture was sterically subsampled and collected on 0.2mm Supor filters, then frozen at -80\u00b0C. 10mL was collected and filtered on combusted GFF filters for CHN analysis. \u00a0 Proteins were extracted in sodium dodecyl sulfate and digested in gel similar to Saito et al., 2014 (Science). Peptides were analyzed by LC-MS/MS on a Thermo Orbitrap Fusion using LC x LC/MS chromatography with high and low pH reversed phase chromatography.
attribute	NC_GLOBAL	awards_0_award_nid	String	646121
attribute	NC_GLOBAL	awards_0_award_number	String	GBMF3934
attribute	NC_GLOBAL	awards_0_funder_name	String	Gordon and Betty Moore Foundation
attribute	NC_GLOBAL	awards_0_funding_acronym	String	GBMF
attribute	NC_GLOBAL	awards_0_funding_source_nid	String	361
attribute	NC_GLOBAL	awards_1_award_nid	String	646122
attribute	NC_GLOBAL	awards_1_award_number	String	GBMF3782
attribute	NC_GLOBAL	awards_1_data_url	String	https://www.moore.org/grant-detail?grantId=GBMF3782
attribute	NC_GLOBAL	awards_1_funder_name	String	Gordon and Betty Moore Foundation: Marine Microbiology Initiative
attribute	NC_GLOBAL	awards_1_funding_acronym	String	MMI
attribute	NC_GLOBAL	awards_1_funding_source_nid	String	385
attribute	NC_GLOBAL	cdm_data_type	String	Other
attribute	NC_GLOBAL	comment	String	Diel proteomes Tricho IMS101 PI: Mak Saito Data Version 1: 2019-12-10
attribute	NC_GLOBAL	Conventions	String	COARDS, CF-1.6, ACDD-1.3
attribute	NC_GLOBAL	creator_email	String	info at bco-dmo.org
attribute	NC_GLOBAL	creator_name	String	BCO-DMO
attribute	NC_GLOBAL	creator_type	String	institution
attribute	NC_GLOBAL	creator_url	String	https://www.bco-dmo.org/
attribute	NC_GLOBAL	data_source	String	extract_data_as_tsv version 2.3 19 Dec 2019
attribute	NC_GLOBAL	dataset_current_state	String	Final and no updates
attribute	NC_GLOBAL	date_created	String	2019-12-10T17:10:43Z
attribute	NC_GLOBAL	date_modified	String	2020-02-07T18:43:23Z
attribute	NC_GLOBAL	defaultDataQuery	String	&time<now
attribute	NC_GLOBAL	doi	String	10.26008/1912/bco-dmo.783873.1
attribute	NC_GLOBAL	infoUrl	String	https://www.bco-dmo.org/dataset/783873
attribute	NC_GLOBAL	institution	String	BCO-DMO
attribute	NC_GLOBAL	instruments_0_acronym	String	Mass Spec
attribute	NC_GLOBAL	instruments_0_dataset_instrument_nid	String	783878
attribute	NC_GLOBAL	instruments_0_description	String	General term for instruments used to measure the mass-to-charge ratio of ions; generally used to find the composition of a sample by generating a mass spectrum representing the masses of sample components.
attribute	NC_GLOBAL	instruments_0_instrument_external_identifier	String	https://vocab.nerc.ac.uk/collection/L05/current/LAB16/
attribute	NC_GLOBAL	instruments_0_instrument_name	String	Mass Spectrometer
attribute	NC_GLOBAL	instruments_0_instrument_nid	String	685
attribute	NC_GLOBAL	instruments_0_supplied_name	String	Thermo Orbitrap Fusion mass spectrometer
attribute	NC_GLOBAL	keywords	String	abundance, bco, bco-dmo, biological, chemical, cnratio, data, dataset, dawn, dmo, erddap, hours, hours_post_dawn, management, name, oceanography, office, post, preliminary, protein, protein_name, relative, relative_protein_abundance
attribute	NC_GLOBAL	license	String	https://www.bco-dmo.org/dataset/783873/license
attribute	NC_GLOBAL	metadata_source	String	https://www.bco-dmo.org/api/dataset/783873
attribute	NC_GLOBAL	param_mapping	String	{'783873': {}}
attribute	NC_GLOBAL	parameter_source	String	https://www.bco-dmo.org/mapserver/dataset/783873/parameters
attribute	NC_GLOBAL	people_0_affiliation	String	Woods Hole Oceanographic Institution
attribute	NC_GLOBAL	people_0_affiliation_acronym	String	WHOI
attribute	NC_GLOBAL	people_0_person_name	String	Mak A. Saito
attribute	NC_GLOBAL	people_0_person_nid	String	50985
attribute	NC_GLOBAL	people_0_role	String	Principal Investigator
attribute	NC_GLOBAL	people_0_role_type	String	originator
attribute	NC_GLOBAL	people_1_affiliation	String	Woods Hole Oceanographic Institution
attribute	NC_GLOBAL	people_1_affiliation_acronym	String	WHOI
attribute	NC_GLOBAL	people_1_person_name	String	Noelle Held
attribute	NC_GLOBAL	people_1_person_nid	String	787371
attribute	NC_GLOBAL	people_1_role	String	Student
attribute	NC_GLOBAL	people_1_role_type	String	related
attribute	NC_GLOBAL	people_2_affiliation	String	Woods Hole Oceanographic Institution
attribute	NC_GLOBAL	people_2_affiliation_acronym	String	WHOI BCO-DMO
attribute	NC_GLOBAL	people_2_person_name	String	Amber D. York
attribute	NC_GLOBAL	people_2_person_nid	String	643627
attribute	NC_GLOBAL	people_2_role	String	BCO-DMO Data Manager
attribute	NC_GLOBAL	people_2_role_type	String	related
attribute	NC_GLOBAL	project	String	MM Proteins and Organics Tech,MM Saito
attribute	NC_GLOBAL	projects_0_acronym	String	MM Proteins and Organics Tech
attribute	NC_GLOBAL	projects_0_description	String	In support of acquiring a high resolution mass spectrometer that incorporates the latest technologies for analyzing proteins and other organic materials.
attribute	NC_GLOBAL	projects_0_end_date	String	2014-06
attribute	NC_GLOBAL	projects_0_name	String	New technology for high resolution analysis of proteins and other organic materials produced by marine microorganisms
attribute	NC_GLOBAL	projects_0_project_nid	String	786670
attribute	NC_GLOBAL	projects_0_project_website	String	https://www.moore.org/grant-detail?grantId=GBMF3934
attribute	NC_GLOBAL	projects_0_start_date	String	2013-06
attribute	NC_GLOBAL	projects_1_acronym	String	MM Saito
attribute	NC_GLOBAL	projects_1_description	String	In support of obtaining deeper knowledge of major biogeochemically relevant proteins to inform a mechanistic understanding of global marine biogeochemical cycles.
attribute	NC_GLOBAL	projects_1_end_date	String	2019-12
attribute	NC_GLOBAL	projects_1_name	String	Marine Microbial Investigator Award: Investigator Mak Saito
attribute	NC_GLOBAL	projects_1_project_nid	String	786672
attribute	NC_GLOBAL	projects_1_start_date	String	2013-05
attribute	NC_GLOBAL	publisher_name	String	Biological and Chemical Oceanographic Data Management Office (BCO-DMO)
attribute	NC_GLOBAL	publisher_type	String	institution
attribute	NC_GLOBAL	sourceUrl	String	(local files)
attribute	NC_GLOBAL	standard_name_vocabulary	String	CF Standard Name Table v55
attribute	NC_GLOBAL	summary	String	Diel proteomes of cultured Trichodesmium erythraeum sp. IMS101 from laboratory experiments conducted in November of 2018.
attribute	NC_GLOBAL	title	String	[Diel proteomes Trichodesmium IMS101] - Diel proteomes of cultured Trichodesmium erythraeum sp. IMS101 from laboratory experiments conducted in November of 2018 (New technology for high resolution analysis of proteins and other organic materials produced by marine microorganisms)
attribute	NC_GLOBAL	version	String	1
attribute	NC_GLOBAL	xml_source	String	osprey2erddap.update_xml() v1.5
variable	protein_name		String
attribute	protein_name	bcodmo_name	String	sample_descrip
attribute	protein_name	description	String	Protein name
attribute	protein_name	long_name	String	Protein Name
attribute	protein_name	units	String	unitless
variable	hours_post_dawn		byte
attribute	hours_post_dawn	_FillValue	byte	127
attribute	hours_post_dawn	actual_range	byte	0, 23
attribute	hours_post_dawn	bcodmo_name	String	time_elapsed
attribute	hours_post_dawn	description	String	Hours post dawn. Hours after incubator light is on
attribute	hours_post_dawn	long_name	String	Hours Post Dawn
attribute	hours_post_dawn	nerc_identifier	String	https://vocab.nerc.ac.uk/collection/P01/current/ELTMZZZZ/
attribute	hours_post_dawn	units	String	hours
variable	cnratio		double
attribute	cnratio	_FillValue	double	NaN
attribute	cnratio	actual_range	double	3.148860158, 4.334379031
attribute	cnratio	bcodmo_name	String	C_to_N
attribute	cnratio	description	String	POC:PON ratio of culture. Ratio of particulate organic carbon to particulate organic nitrogen
attribute	cnratio	long_name	String	Cnratio
attribute	cnratio	units	String	dimensionless
variable	relative_protein_abundance		float
attribute	relative_protein_abundance	_FillValue	float	NaN
attribute	relative_protein_abundance	actual_range	float	0.0, 1126.7
attribute	relative_protein_abundance	bcodmo_name	String	proteins
attribute	relative_protein_abundance	description	String	Relative protein abundance. Normalized spectral counts.
attribute	relative_protein_abundance	long_name	String	Relative Protein Abundance
attribute	relative_protein_abundance	units	String	unitless

The information in the table above is also available in other file formats (.csv, .htmlTable, .itx, .json, .jsonlCSV1, .jsonlCSV, .jsonlKVP, .mat, .nc, .nccsv, .tsv, .xhtml) via a RESTful web service.