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   set  data   graph     files  public Macrofauna collected on colonization panels at Snail Vent Field on the Mariana Back-arc in
2014
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The Dataset's Variables and Attributes

Row Type Variable Name Attribute Name Data Type Value
attribute NC_GLOBAL access_formats String .htmlTable,.csv,.json,.mat,.nc,.tsv,.esriCsv,.geoJson
attribute NC_GLOBAL acquisition_description String Deployment of Colonization Substrate
Two sets of three colonization \"sandwiches\" were deployed at Snail Vent, a
hydrothermal vent in the Mariana Back-arc, during cruise YK10-11 in 2010.
\"Sandwiches\" consisted of six Lexan plastic settlement plates, each
measuring 0.7cm by 10cm by 10cm, separated from each other by 1cm spacers. The
sandwich sets were placed near the base of a hydrothermal vent by the
submersible Shinkai 6500. For additional deployment metadata, please refer to:
[http://www.marine-geo.org/tools/search/entry.php?id=YK10-11](\\"http://www
.marine-geo.org/tools/search/entry.php?id=YK10-11\\"), in particular the
Bottom:Deployed Event Marker-Sandwiches and
Sampler:Biology:ColonizationSubstrate. We want to thank Chief Scientist
Shigeaki Kojima for this sample deployment.

Recovery of Colonization Substrate
The sandwiches were left for approximately 4 years, and recovered by the ROV
Jason II in 2014 on cruise RR1413. Only one set of colonization sandwiches was
retrieved, as the other set was buried and could not be recovered. The maximum
temperature observed at the sandwiches during recovery was 17.36 deg C.
Sandwiches were initially placed into a biobox onboard the ROV, then
transferred to another biobox on an elevator for recovery. During this
transfer, as well as during the recovery of the elevator at the surface, some
specimens may have been lost.

Shipboard Sample Processing
Sandwiches were removed from the biobox into individual bags and the
elevator biobox washings were siphoned into a jar. The bags and jar were
filled with ammonium sulfate solution buffered with EDTA and sodium citrate.
We want to thank Shawn Arellano for this sample recovery and shipboard sample
processing.

Laboratory Sorting and Morphological Identification
Samples remained in the ammonium sulfate solution for 1 to 1.5 years.
Samples were rinsed with TE buffer prior to placement in 95% ethanol. The
sandwiches were manually disassembled, and each entire plate- inclusive of
both sides and edges- was examined for all attached macrofauna under a
dissecting microscope at 25x. Washings were passed over a 63 micron sieve, and
also examined at 25x.

Macrofauna, including foraminifera, were sorted to lowest taxonomic level,
tallied, and placed into separate vials. Ciliates were tallied, but not
usually retained; some were placed into sorted vials. Morphological
identification was limited due to the degradation of the sample. We consulted
with international experts to identify many of the morphotypes. All
morphotypes, except the ciliates, were photographed. Potentially, ciliates
could be identified through metabarcoding of the sorted vials. All photographs
were by Mary Toner, with the exception of barnacles by Hiromi Watanabe.

This dataset is complete for one of the three \"sandwiches\", and for the
biobox washings.

Genetic Barcoding
A subset of eight individuals, representing eight morphotypes, was prepared
for the Canadian Centre for DNA Barcoding. We used sterile techniques to
provide snips of larger specimens. The five submitted in 2017 used the CCDB
regular protocol for extraction, amplification, (with two primer sets,
C_LepFoIF/C_LepFOIR and ZplankF1/ZplankR1) and sequencing for the Cytochrome
Oxidase Subunit 1 - 5 prime region (COI). The three submitted in 2018 used the
CCDB protocol for Next Generation Sequencing for COI. Results may be viewed in
the Barcode of Life Data System (BOLD) Public Data Portal using the project
search SNLBE. We also consulted with international experts on genetic
sequences.

Problem Report
One set of colonization \"sandwiches\" could not be recovered, as it was
buried by a partial collapse of surrounding rock.

Some specimens may have been lost during a transfer of samples between
bioboxes at the seafloor, as well as upon recovery at the surface. As such,
our counts cannot be used for quantitative analysis of hydrothermal
macrofauna.
attribute NC_GLOBAL awards_0_award_nid String 557458
attribute NC_GLOBAL awards_0_award_number String OCE-1155756
attribute NC_GLOBAL awards_0_data_url String http://www.nsf.gov/awardsearch/showAward.do?AwardNumber=1155756 (external link)
attribute NC_GLOBAL awards_0_funder_name String NSF Division of Ocean Sciences
attribute NC_GLOBAL awards_0_funding_acronym String NSF OCE
attribute NC_GLOBAL awards_0_funding_source_nid String 355
attribute NC_GLOBAL awards_0_program_manager String David L. Garrison
attribute NC_GLOBAL awards_0_program_manager_nid String 50534
attribute NC_GLOBAL awards_1_award_nid String 767732
attribute NC_GLOBAL awards_1_award_number String OCE-1028862
attribute NC_GLOBAL awards_1_data_url String http://www.nsf.gov/awardsearch/showAward.do?AwardNumber=1028862 (external link)
attribute NC_GLOBAL awards_1_funder_name String NSF Division of Ocean Sciences
attribute NC_GLOBAL awards_1_funding_acronym String NSF OCE
attribute NC_GLOBAL awards_1_funding_source_nid String 355
attribute NC_GLOBAL awards_1_program_manager String David L. Garrison
attribute NC_GLOBAL awards_1_program_manager_nid String 50534
attribute NC_GLOBAL cdm_data_type String Other
attribute NC_GLOBAL comment String Macrofauna collected on colonization panels
at Snail Vent Field on the Mariana Back-arc in 2014
PI: Stace Beaulieu (WHOI)
Co-PIs: Mary Toner & Susan Mills (WHOI)
Version history:
2020-02-11 (current) - changed "no photo" in associatedMedia column to "nd"
2019-12-10 (v1) - origial file served
attribute NC_GLOBAL Conventions String COARDS, CF-1.6, ACDD-1.3
attribute NC_GLOBAL creator_email String info at bco-dmo.org
attribute NC_GLOBAL creator_name String BCO-DMO
attribute NC_GLOBAL creator_type String institution
attribute NC_GLOBAL creator_url String https://www.bco-dmo.org/ (external link)
attribute NC_GLOBAL data_source String extract_data_as_tsv version 2.3 19 Dec 2019
attribute NC_GLOBAL date_created String 2019-12-10T18:02:51Z
attribute NC_GLOBAL date_modified String 2020-02-11T15:41:41Z
attribute NC_GLOBAL defaultDataQuery String &time<now
attribute NC_GLOBAL doi String 10.1575/1912/bco-dmo.783880.2
attribute NC_GLOBAL Easternmost_Easting double 143.619
attribute NC_GLOBAL geospatial_lat_max double 12.9531
attribute NC_GLOBAL geospatial_lat_min double 12.9531
attribute NC_GLOBAL geospatial_lat_units String degrees_north
attribute NC_GLOBAL geospatial_lon_max double 143.619
attribute NC_GLOBAL geospatial_lon_min double 143.619
attribute NC_GLOBAL geospatial_lon_units String degrees_east
attribute NC_GLOBAL geospatial_vertical_max double 2848.0
attribute NC_GLOBAL geospatial_vertical_min double 2848.0
attribute NC_GLOBAL geospatial_vertical_positive String down
attribute NC_GLOBAL geospatial_vertical_units String m
attribute NC_GLOBAL infoUrl String https://www.bco-dmo.org/dataset/783880 (external link)
attribute NC_GLOBAL institution String BCO-DMO
attribute NC_GLOBAL instruments_0_acronym String ROV Jason
attribute NC_GLOBAL instruments_0_dataset_instrument_nid String 783944
attribute NC_GLOBAL instruments_0_description String The Remotely Operated Vehicle (ROV) Jason is operated by the Deep Submergence Laboratory (DSL) at Woods Hole Oceanographic Institution (WHOI). WHOI engineers and scientists designed and built the ROV Jason to give scientists access to the seafloor that didn't require them leaving the deck of the ship. Jason is a two-body ROV system. A 10-kilometer (6-mile) fiber-optic cable delivers electrical power and commands from the ship through Medea and down to Jason, which then returns data and live video imagery. Medea serves as a shock absorber, buffering Jason from the movements of the ship, while providing lighting and a bird’s eye view of the ROV during seafloor operations. During each dive (deployment of the ROV), Jason pilots and scientists work from a control room on the ship to monitor Jason’s instruments and video while maneuvering the vehicle and optionally performing a variety of sampling activities. Jason is equipped with sonar imagers, water samplers, video and still cameras, and lighting gear. Jason’s manipulator arms collect samples of rock, sediment, or marine life and place them in the vehicle’s basket or on "elevator" platforms that float heavier loads to the surface. More information is available from the operator site at URL.
attribute NC_GLOBAL instruments_0_instrument_name String ROV Jason
attribute NC_GLOBAL instruments_0_instrument_nid String 638
attribute NC_GLOBAL instruments_1_dataset_instrument_nid String 783946
attribute NC_GLOBAL instruments_1_description String Instruments that generate enlarged images of samples using the phenomena of reflection and absorption of visible light. Includes conventional and inverted instruments. Also called a "light microscope".
attribute NC_GLOBAL instruments_1_instrument_external_identifier String https://vocab.nerc.ac.uk/collection/L05/current/LAB05/ (external link)
attribute NC_GLOBAL instruments_1_instrument_name String Microscope-Optical
attribute NC_GLOBAL instruments_1_instrument_nid String 708
attribute NC_GLOBAL instruments_1_supplied_name String dissecting microscope
attribute NC_GLOBAL keywords String associated, associatedMedia, associatedSequences, basis, basisOfRecord, bco, bco-dmo, biological, body, chemical, code, country, countryCode, data, dataset, date, depth, dmo, erddap, event, identification, identificationQualifier, identificationRemarks, identified, identifiedBy, kingdom, latitude, locality, longitude, management, maximum, maximumDepthInMeters, media, meters, minimum, minimumDepthInMeters, name, occurrence, occurrenceID, occurrenceStatus, oceanography, office, phylum, preliminary, qualifier, rank, record, remarks, scientific, scientificName, scientificNameID, sequences, sorted, status, taxon, taxonRank, time, total, total_sorted, water, waterBody
attribute NC_GLOBAL license String https://www.bco-dmo.org/dataset/783880/license (external link)
attribute NC_GLOBAL metadata_source String https://www.bco-dmo.org/api/dataset/783880 (external link)
attribute NC_GLOBAL Northernmost_Northing double 12.9531
attribute NC_GLOBAL param_mapping String {'783880': {'decimalLongitude': 'flag - longitude', 'decimalLatitude': 'flag - latitude', 'maximumDepthInMeters': 'flag - depth'}}
attribute NC_GLOBAL parameter_source String https://www.bco-dmo.org/mapserver/dataset/783880/parameters (external link)
attribute NC_GLOBAL people_0_affiliation String Woods Hole Oceanographic Institution
attribute NC_GLOBAL people_0_affiliation_acronym String WHOI
attribute NC_GLOBAL people_0_person_name String Stace Beaulieu
attribute NC_GLOBAL people_0_person_nid String 665150
attribute NC_GLOBAL people_0_role String Principal Investigator
attribute NC_GLOBAL people_0_role_type String originator
attribute NC_GLOBAL people_1_affiliation String Woods Hole Oceanographic Institution
attribute NC_GLOBAL people_1_affiliation_acronym String WHOI
attribute NC_GLOBAL people_1_person_name String Susan Mills
attribute NC_GLOBAL people_1_person_nid String 783891
attribute NC_GLOBAL people_1_role String Co-Principal Investigator
attribute NC_GLOBAL people_1_role_type String originator
attribute NC_GLOBAL people_2_affiliation String Woods Hole Oceanographic Institution
attribute NC_GLOBAL people_2_affiliation_acronym String WHOI
attribute NC_GLOBAL people_2_person_name String Mary Toner
attribute NC_GLOBAL people_2_person_nid String 783888
attribute NC_GLOBAL people_2_role String Co-Principal Investigator
attribute NC_GLOBAL people_2_role_type String originator
attribute NC_GLOBAL people_3_affiliation String Woods Hole Oceanographic Institution
attribute NC_GLOBAL people_3_affiliation_acronym String WHOI BCO-DMO
attribute NC_GLOBAL people_3_person_name String Shannon Rauch
attribute NC_GLOBAL people_3_person_nid String 51498
attribute NC_GLOBAL people_3_role String BCO-DMO Data Manager
attribute NC_GLOBAL people_3_role_type String related
attribute NC_GLOBAL project String Mariana Back-arc Vents
attribute NC_GLOBAL projects_0_acronym String Mariana Back-arc Vents
attribute NC_GLOBAL projects_0_description String NSF Award Abstract:
Summary: Since the discovery of deep-sea hydrothermal vents over thirty years ago, scientists have been perplexed by the question: How are these vent sites colonized and, more specifically, How are the faunal populations established and maintained at these very discrete and often ephemeral habitats. For animals that are sessile or have limited mobility as adults, dispersal to these habitats occurs early in the life cycle, as planktonic larvae in the water column. Due to the difficulties in sampling deep-sea larvae, including low abundances (dilute concentrations), we have very few quantitative estimates of larval dispersal between or larval supply to hydrothermal vents. We also have little to no knowledge of the behavior of vent larvae. The PIs will use large-volume plankton pumps to collect larvae near vents in the southern Mariana Trough in a collaborative effort to quantify larval abundance, behavior, and dispersal in this little-studied region. The collaboration combines the PI's strengths in the collection and morphological identification of larvae and quantifying and modeling dispersal between deep-sea vents, and those of Japanese partners in rearing larvae of hydrothermal vent fauna, molecular genetic identification of larvae, and population genetics of vent fauna.
Intellectual merit: The southern Mariana Trough is a very interesting region in which to study dispersal of vent-endemic fauna, due to the proximity of vents in the back-arc spreading center to vents along the Mariana Arc. These two tectonic settings create different habitat conditions and support vent communities with different species composition. Vent sites the PIs will visit, in the axis and just off-axis of the back-arc spreading center are as close as 25 km to vents on the arc, yet 600 km south of the other known vents in the back-arc. In addition to the new information on larval abundance, diversity, behavior, and dispersal that will be gained for this little-studied region of the world's ridge system, this project has direct relevance to the integration and synthesis goals of the U.S. Ridge 2000 Program. The PI's lab group has conducted previous work at the Ridge 2000 East Pacific Rise (EPR) Integrated Studies Site (ISS). They will be making a direct comparison of the larval abundance and diversity at the EPR ISS to this very different setting along the global 'baseball seam' of oceanic spreading centers. No other such comparison has been possible due to the lack of sampling effort for larvae with large-volume pumps. Also, they are proposing the first experiments with live vent larvae (to the best of our knowledge - with the exception of brachyuran megalopae at 1 atm) to estimate swimming and sinking rates that are important for adding behavioral information to models of larval dispersal.
Broader Impacts: The project involves reciprocal training and cultural exchange - the PIs will learn field and laboratory research techniques from the Japanese PIs, and they will learn from the U.S. PIs. The project will also benefit the career development of a junior researcher (Beaulieu). The proposed activity broadens the participation of both U.S. and Japanese women scientists in sea-going, oceanographic research. The PIs will broadcast the cruise activities in a web log posted by the international InterRidge Program Office, and they anticipate at least three scientific publications will emerge. New species will be added to the online photographic identification guide for vent larvae and included in the second edition of the printed guide.
Additional cruise data and information are available from MGDS: http://www.marine-geo.org/tools/search/entry.php?id=YK10-11
attribute NC_GLOBAL projects_0_end_date String 2012-04
attribute NC_GLOBAL projects_0_geolocation String Southern Mariana Trough
attribute NC_GLOBAL projects_0_name String RAPID: Larval Abundance, Behavior and Dispersal at Deep-sea Hydrothermal Vents in the Southern Mariana Trough
attribute NC_GLOBAL projects_0_project_nid String 767733
attribute NC_GLOBAL projects_0_start_date String 2010-05
attribute NC_GLOBAL publisher_name String Biological and Chemical Oceanographic Data Management Office (BCO-DMO)
attribute NC_GLOBAL publisher_type String institution
attribute NC_GLOBAL sourceUrl String (local files)
attribute NC_GLOBAL Southernmost_Northing double 12.9531
attribute NC_GLOBAL standard_name_vocabulary String CF Standard Name Table v55
attribute NC_GLOBAL subsetVariables String kingdom,occurrenceStatus,basisOfRecord,longitude,latitude,minimumDepthInMeters,waterBody,locality,countryCode
attribute NC_GLOBAL summary String This dataset indicates organisms, identified to varying levels of taxonomic granularity, present on colonization surfaces deployed at deep-sea vents in the West Pacific.
attribute NC_GLOBAL title String Macrofauna collected on colonization panels at Snail Vent Field on the Mariana Back-arc in 2014
attribute NC_GLOBAL version String 2
attribute NC_GLOBAL Westernmost_Easting double 143.619
attribute NC_GLOBAL xml_source String osprey2erddap.update_xml() v1.3
variable occurrenceID   String  
attribute occurrenceID bcodmo_name String sample
attribute occurrenceID description String A globally unique, persistent identifier for the occurrence.
attribute occurrenceID long_name String Occurrence ID
attribute occurrenceID nerc_identifier String https://vocab.nerc.ac.uk/collection/P02/current/ACYC/ (external link)
attribute occurrenceID units String none
variable kingdom   String  
attribute kingdom bcodmo_name String kingdom
attribute kingdom description String The full scientific name of the kingdom in which the taxon is classified.
attribute kingdom long_name String Kingdom
attribute kingdom units String none
variable phylum   String  
attribute phylum bcodmo_name String phylum
attribute phylum description String The full scientific name of the phylum in which the taxon is classified.
attribute phylum long_name String Phylum
attribute phylum units String none
variable scientificName   String  
attribute scientificName bcodmo_name String species
attribute scientificName description String The full scientific name to the lowest taxonomic rank that can be determined.
attribute scientificName long_name String Scientific Name
attribute scientificName units String none
variable scientificNameID   String  
attribute scientificNameID bcodmo_name String taxon_code
attribute scientificNameID description String WoRMS identifier for the nomenclatural (not taxonomic) details of a scientific name.
attribute scientificNameID long_name String Scientific Name ID
attribute scientificNameID units String none
variable taxonRank   String  
attribute taxonRank bcodmo_name String taxon
attribute taxonRank description String The taxonomic rank of the most specific name in the scientificName.
attribute taxonRank long_name String Taxon Rank
attribute taxonRank units String none
variable identificationRemarks   String  
attribute identificationRemarks bcodmo_name String comment
attribute identificationRemarks description String Comments/notes about the identification.
attribute identificationRemarks long_name String Identification Remarks
attribute identificationRemarks units String none
variable identificationQualifier   String  
attribute identificationQualifier bcodmo_name String q_flag
attribute identificationQualifier description String A controlled value to express the determiner's doubts about the Identification.
attribute identificationQualifier long_name String Identification Qualifier
attribute identificationQualifier units String none
variable occurrenceStatus   String  
attribute occurrenceStatus bcodmo_name String sample_descrip
attribute occurrenceStatus description String A statement about the presence or absence of a Taxon at a Location.
attribute occurrenceStatus long_name String Occurrence Status
attribute occurrenceStatus units String none
variable basisOfRecord   String  
attribute basisOfRecord bcodmo_name String instrument
attribute basisOfRecord description String The specific nature of the data record, using the standard label of one of the Darwin Core classes.
attribute basisOfRecord long_name String Basis Of Record
attribute basisOfRecord units String none
variable eventDate   String  
attribute eventDate bcodmo_name String date
attribute eventDate description String The date-time during which an Event occurred. For occurrences, this is the date-time when the event was recorded.
attribute eventDate long_name String Event Date
attribute eventDate nerc_identifier String https://vocab.nerc.ac.uk/collection/P01/current/ADATAA01/ (external link)
attribute eventDate source_name String eventDate
attribute eventDate time_precision String 1970-01-01
attribute eventDate units String none
variable longitude   double  
attribute longitude _CoordinateAxisType String Lon
attribute longitude _FillValue double NaN
attribute longitude actual_range double 143.619, 143.619
attribute longitude axis String X
attribute longitude bcodmo_name String longitude
attribute longitude colorBarMaximum double 180.0
attribute longitude colorBarMinimum double -180.0
attribute longitude description String The geographic longitude (in decimal degrees) of the geographic center of a Location.
attribute longitude ioos_category String Location
attribute longitude long_name String Longitude
attribute longitude nerc_identifier String https://vocab.nerc.ac.uk/collection/P09/current/LONX/ (external link)
attribute longitude source_name String decimalLongitude
attribute longitude standard_name String longitude
attribute longitude units String degrees_east
variable latitude   double  
attribute latitude _CoordinateAxisType String Lat
attribute latitude _FillValue double NaN
attribute latitude actual_range double 12.9531, 12.9531
attribute latitude axis String Y
attribute latitude bcodmo_name String latitude
attribute latitude colorBarMaximum double 90.0
attribute latitude colorBarMinimum double -90.0
attribute latitude description String The geographic latitude (in decimal degrees) of the geographic center of a Location.
attribute latitude ioos_category String Location
attribute latitude long_name String Latitude
attribute latitude nerc_identifier String https://vocab.nerc.ac.uk/collection/P09/current/LATX/ (external link)
attribute latitude source_name String decimalLatitude
attribute latitude standard_name String latitude
attribute latitude units String degrees_north
variable depth   double  
attribute depth _CoordinateAxisType String Height
attribute depth _CoordinateZisPositive String down
attribute depth _FillValue double NaN
attribute depth actual_range double 2848.0, 2848.0
attribute depth axis String Z
attribute depth bcodmo_name String depth
attribute depth description String Depth below the local surface in meters.
attribute depth ioos_category String Location
attribute depth long_name String Maximum Depth In Meters
attribute depth nerc_identifier String https://vocab.nerc.ac.uk/collection/P09/current/DEPH/ (external link)
attribute depth positive String down
attribute depth standard_name String depth
attribute depth units String m
variable minimumDepthInMeters   short  
attribute minimumDepthInMeters _FillValue short 32767
attribute minimumDepthInMeters actual_range short 2848, 2848
attribute minimumDepthInMeters bcodmo_name String depth
attribute minimumDepthInMeters description String Depth below the local surface in meters.
attribute minimumDepthInMeters long_name String Minimum Depth In Meters
attribute minimumDepthInMeters nerc_identifier String https://vocab.nerc.ac.uk/collection/P09/current/DEPH/ (external link)
attribute minimumDepthInMeters units String meters
variable waterBody   String  
attribute waterBody bcodmo_name String site
attribute waterBody description String The name from the Getty Thesaurus of Geographic Names of the water body in which the Location occurs.
attribute waterBody long_name String Water Body
attribute waterBody units String none
variable locality   String  
attribute locality bcodmo_name String site
attribute locality description String The specific description of the place.
attribute locality long_name String Locality
attribute locality units String none
variable countryCode   String  
attribute countryCode bcodmo_name String site
attribute countryCode description String The ISO-3166 standard code for the country in which the Location occurs.
attribute countryCode long_name String Country Code
attribute countryCode units String none
variable identifiedBy   String  
attribute identifiedBy bcodmo_name String recorder
attribute identifiedBy description String A list (concatenated and separated with space vertical bar space ( | )) of names of people who assigned the Taxon to the subject.
attribute identifiedBy long_name String Identified By
attribute identifiedBy units String none
variable associatedMedia   String  
attribute associatedMedia bcodmo_name String file_name
attribute associatedMedia description String File name of media associated with the Occurrence. See "Data Files" section of metadata for .zip file of images.
attribute associatedMedia fileAccessBaseUrl String https://datadocs.bco-dmo.org/docs/Mariana_Back-arc_Vents/data_docs/783880/ (external link)
attribute associatedMedia long_name String Associated Media
attribute associatedMedia units String none
variable total_sorted   short  
attribute total_sorted _FillValue short 32767
attribute total_sorted actual_range short 1, 650
attribute total_sorted bcodmo_name String count
attribute total_sorted description String The total number of specimens of this taxon that have been sorted and morphologically identified; as specimens from some colonization panels have yet to be sorted and identified, this is not an absolute count
attribute total_sorted long_name String Total Sorted
attribute total_sorted units String individuals
variable associatedSequences   String  
attribute associatedSequences bcodmo_name String sequence
attribute associatedSequences description String Genetic sequence information associated with the Occurrence. We provide a full URL path; the sequence identifier at the end of the URL, starting with SNLBE, is persistent
attribute associatedSequences long_name String Associated Sequences
attribute associatedSequences units String none

The information in the table above is also available in other file formats (.csv, .htmlTable, .itx, .json, .jsonlCSV1, .jsonlCSV, .jsonlKVP, .mat, .nc, .nccsv, .tsv, .xhtml) via a RESTful web service.


 
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