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Title Sum-
Institution Dataset ID
   set  data   graph     files  public Calculated power from the oxidation of biomolecules with oxygen at South Pacific Gyre (hole
U1370, IODP Expedition 329)
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The Dataset's Variables and Attributes

Row Type Variable Name Attribute Name Data Type Value
attribute NC_GLOBAL access_formats String .htmlTable,.csv,.json,.mat,.nc,.tsv,.esriCsv,.geoJson
attribute NC_GLOBAL acquisition_description String ""
attribute NC_GLOBAL awards_0_award_nid String 554980
attribute NC_GLOBAL awards_0_award_number String OCE-0939564
attribute NC_GLOBAL awards_0_data_url String http://www.nsf.gov/awardsearch/showAward?AWD_ID=0939564 (external link)
attribute NC_GLOBAL awards_0_funder_name String NSF Division of Ocean Sciences
attribute NC_GLOBAL awards_0_funding_acronym String NSF OCE
attribute NC_GLOBAL awards_0_funding_source_nid String 355
attribute NC_GLOBAL awards_0_program_manager String David L. Garrison
attribute NC_GLOBAL awards_0_program_manager_nid String 50534
attribute NC_GLOBAL cdm_data_type String Other
attribute NC_GLOBAL comment String Calculated power from the oxidation of biomolecules with oxygen at South Pacific Gyre (hole U1370, IODP Expedition 329)
PI: James Bradley
Version: 2019-12-17
attribute NC_GLOBAL Conventions String COARDS, CF-1.6, ACDD-1.3
attribute NC_GLOBAL creator_email String info at bco-dmo.org
attribute NC_GLOBAL creator_name String BCO-DMO
attribute NC_GLOBAL creator_type String institution
attribute NC_GLOBAL creator_url String https://www.bco-dmo.org/ (external link)
attribute NC_GLOBAL data_source String extract_data_as_tsv version 2.3 19 Dec 2019
attribute NC_GLOBAL date_created String 2019-12-17T19:50:35Z
attribute NC_GLOBAL date_modified String 2019-12-20T14:20:45Z
attribute NC_GLOBAL defaultDataQuery String &time<now
attribute NC_GLOBAL doi String 10.1575/1912/bco-dmo.784530.1
attribute NC_GLOBAL Easternmost_Easting double -153.1
attribute NC_GLOBAL geospatial_lat_max double -41.85
attribute NC_GLOBAL geospatial_lat_min double -41.85
attribute NC_GLOBAL geospatial_lat_units String degrees_north
attribute NC_GLOBAL geospatial_lon_max double -153.1
attribute NC_GLOBAL geospatial_lon_min double -153.1
attribute NC_GLOBAL geospatial_lon_units String degrees_east
attribute NC_GLOBAL infoUrl String https://www.bco-dmo.org/dataset/784530 (external link)
attribute NC_GLOBAL institution String BCO-DMO
attribute NC_GLOBAL keywords String amount, Amount_of_biomolecule, bco, bco-dmo, biological, biomolecule, chemical, Chemical_Formula, data, dataset, dmo, energy, erddap, formula, latitude, longitude, management, molecule, oceanography, office, preliminary
attribute NC_GLOBAL license String https://www.bco-dmo.org/dataset/784530/license (external link)
attribute NC_GLOBAL metadata_source String https://www.bco-dmo.org/api/dataset/784530 (external link)
attribute NC_GLOBAL Northernmost_Northing double -41.85
attribute NC_GLOBAL param_mapping String {'784530': {'lat': 'flag - latitude', 'lon': 'flag - longitude'}}
attribute NC_GLOBAL parameter_source String https://www.bco-dmo.org/mapserver/dataset/784530/parameters (external link)
attribute NC_GLOBAL people_0_affiliation String University of Southern California
attribute NC_GLOBAL people_0_affiliation_acronym String USC
attribute NC_GLOBAL people_0_person_name String James Bradley
attribute NC_GLOBAL people_0_person_nid String 776340
attribute NC_GLOBAL people_0_role String Principal Investigator
attribute NC_GLOBAL people_0_role_type String originator
attribute NC_GLOBAL people_1_affiliation String University of Southern California
attribute NC_GLOBAL people_1_affiliation_acronym String USC
attribute NC_GLOBAL people_1_person_name String Doug LaRowe
attribute NC_GLOBAL people_1_person_nid String 776342
attribute NC_GLOBAL people_1_role String Co-Principal Investigator
attribute NC_GLOBAL people_1_role_type String originator
attribute NC_GLOBAL people_2_affiliation String Woods Hole Oceanographic Institution
attribute NC_GLOBAL people_2_affiliation_acronym String WHOI BCO-DMO
attribute NC_GLOBAL people_2_person_name String Mathew Biddle
attribute NC_GLOBAL people_2_person_nid String 708682
attribute NC_GLOBAL people_2_role String BCO-DMO Data Manager
attribute NC_GLOBAL people_2_role_type String related
attribute NC_GLOBAL project String BIO-SED
attribute NC_GLOBAL projects_0_acronym String BIO-SED
attribute NC_GLOBAL projects_0_description String Abstract (from C-DEBI, www.darkenergybiosphere.org)
Microorganisms buried in marine sediments endure prolonged energy-limitation over geological timescales. My research within C-DEBI is motivated by the quest to determine and understand activity levels among microbial communities in the marine subsurface in relation to their geochemical and physical environment. To this end, in collaboration with Doug LaRowe and Jan Amend (USC), I developed novel modelling frameworks based on thermodynamic and microbial-modelling principles to explore and quantify:
The energy sources to deeply buried microorganisms and their demand for energy.
The activity of microorganisms and the factors that determine physiological transitions between active and dormant states.
The varying energy requirements of active and dormant microbes and the allocation of energy between maintenance and growth.
The cell-specific energy utilization (i.e. power) of subsurface life on a global scale.
I led the development of a new freely-available and open-source platform MicroLow 1.0 – a process-based microbial model that explicitly considers physiological state transitions and energy for maintenance and growth. Using this model, I showed that energetic efficiency provides a selective advantage for long-term microbial survival in oligotrophic marine sediments. Numerous additional opportunities have arisen thanks to the C-DEBI program and community, including participation in two collaborative workshops (organic carbon preservation, impacts of deep sea mining), numerous valuable interactions, ongoing collaborations and spin-off projects, presentations at international conferences, professional development opportunities, media exposure, complementary funding including a Deep Carbon Observatory DLMV Fellowship, significant widening of my professional network, fieldwork opportunities, and career progression.
attribute NC_GLOBAL projects_0_end_date String 2019-03
attribute NC_GLOBAL projects_0_name String Develop a 1D biogeochemical-evolutionary model for deep sediments
attribute NC_GLOBAL projects_0_project_nid String 776336
attribute NC_GLOBAL projects_0_project_website String https://www.darkenergybiosphere.org/award/develop-a-1d-biogeochemical-evolutionary-model-for-deep-sediments/ (external link)
attribute NC_GLOBAL projects_0_start_date String 2016-10
attribute NC_GLOBAL publisher_name String Biological and Chemical Oceanographic Data Management Office (BCO-DMO)
attribute NC_GLOBAL publisher_type String institution
attribute NC_GLOBAL sourceUrl String (local files)
attribute NC_GLOBAL Southernmost_Northing double -41.85
attribute NC_GLOBAL standard_name_vocabulary String CF Standard Name Table v55
attribute NC_GLOBAL subsetVariables String latitude,longitude
attribute NC_GLOBAL summary String Calculated power from the oxidation of biomolecules with oxygen at South Pacific Gyre (hole U1370, IODP Expedition 329)
attribute NC_GLOBAL title String Calculated power from the oxidation of biomolecules with oxygen at South Pacific Gyre (hole U1370, IODP Expedition 329)
attribute NC_GLOBAL version String 1
attribute NC_GLOBAL Westernmost_Easting double -153.1
attribute NC_GLOBAL xml_source String osprey2erddap.update_xml() v1.3
variable Molecule   String  
attribute Molecule bcodmo_name String unknown
attribute Molecule description String molecule name
attribute Molecule long_name String Molecule
attribute Molecule units String unitless
variable Chemical_Formula   String  
attribute Chemical_Formula bcodmo_name String unknown
attribute Chemical_Formula description String chemical formula
attribute Chemical_Formula long_name String Chemical Formula
attribute Chemical_Formula units String unitless
variable Amount_of_biomolecule   double  
attribute Amount_of_biomolecule _FillValue double NaN
attribute Amount_of_biomolecule actual_range double 2.1573012957098096E-19, 1.823685436834766E-17
attribute Amount_of_biomolecule bcodmo_name String unknown
attribute Amount_of_biomolecule description String Mass of biomolecule in cell
attribute Amount_of_biomolecule long_name String Amount Of Biomolecule
attribute Amount_of_biomolecule units String mole per cell (mole/cell)
variable Energy   double  
attribute Energy _FillValue double NaN
attribute Energy actual_range double 7.181766313553418E-13, 4.1875006302413007E-11
attribute Energy bcodmo_name String unknown
attribute Energy description String energy from oxidation of biomolecule with O2
attribute Energy long_name String Energy
attribute Energy units String picoJoules per cell (pJ/cell)
variable latitude   double  
attribute latitude _CoordinateAxisType String Lat
attribute latitude _FillValue double NaN
attribute latitude actual_range double -41.85, -41.85
attribute latitude axis String Y
attribute latitude bcodmo_name String latitude
attribute latitude colorBarMaximum double 90.0
attribute latitude colorBarMinimum double -90.0
attribute latitude description String latitude with negative values indicating South
attribute latitude ioos_category String Location
attribute latitude long_name String Latitude
attribute latitude nerc_identifier String https://vocab.nerc.ac.uk/collection/P09/current/LATX/ (external link)
attribute latitude standard_name String latitude
attribute latitude units String degrees_north
variable longitude   double  
attribute longitude _CoordinateAxisType String Lon
attribute longitude _FillValue double NaN
attribute longitude actual_range double -153.1, -153.1
attribute longitude axis String X
attribute longitude bcodmo_name String longitude
attribute longitude colorBarMaximum double 180.0
attribute longitude colorBarMinimum double -180.0
attribute longitude description String longitude with negative values indicating West
attribute longitude ioos_category String Location
attribute longitude long_name String Longitude
attribute longitude nerc_identifier String https://vocab.nerc.ac.uk/collection/P09/current/LONX/ (external link)
attribute longitude standard_name String longitude
attribute longitude units String degrees_east

The information in the table above is also available in other file formats (.csv, .htmlTable, .itx, .json, .jsonlCSV1, .jsonlCSV, .jsonlKVP, .mat, .nc, .nccsv, .tsv, .xhtml) via a RESTful web service.

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